Query 023258
Match_columns 285
No_of_seqs 238 out of 1964
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 03:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023258.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023258hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 32.1 26 0.0019 17.1 2.9 18 254-271 2-19 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 25.3 1.7E+02 0.012 24.0 15.3 72 151-224 194-271 (383)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.8 3.1E+02 0.023 21.1 11.7 46 177-222 56-103 (447)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 11.1 3.2E+02 0.023 20.8 8.6 31 192-222 37-67 (248)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 10.9 1.2E+02 0.0088 15.8 3.0 18 90-107 18-35 (37)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 10.0 1.1E+02 0.0077 15.0 2.2 9 198-206 20-28 (30)
7 d1e12a_ f.13.1.1 (A:) Halorhod 6.4 4.8E+02 0.035 19.3 12.8 6 265-270 182-187 (239)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 6.3 3.3E+02 0.024 17.2 4.4 27 253-279 31-57 (100)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 4.8 7.7E+02 0.056 19.8 18.2 23 116-138 263-285 (472)
10 d1rh5b_ f.23.28.1 (B:) Preprot 4.2 3.8E+02 0.027 15.4 3.2 18 255-272 30-47 (56)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=32.08 E-value=26 Score=17.12 Aligned_cols=18 Identities=6% Similarity=0.085 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023258 254 MLAVLVGLFSSITGGISY 271 (285)
Q Consensus 254 ~~G~l~~llsa~~~A~~~ 271 (285)
.+|.+++-++++.||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367888888999988753
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=25.28 E-value=1.7e+02 Score=23.99 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH--HHHhh----HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 023258 151 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT--VLSFT----APIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 224 (285)
Q Consensus 151 ~~~~~l~~~~~~~~l~~~~~~~al~~~~~~~a~--~l~~~----~Pl~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~li~ 224 (285)
+......++.++.-.++..|.-+-.......+. .++.. .-.++.++...+.+.|++.....-. +++|++-+.
T Consensus 194 ~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVait 271 (383)
T d1u7ga_ 194 HNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVT 271 (383)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHT
T ss_pred CChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcc
Confidence 344556666666677777777655543332221 12222 2233333333456777877665432 344655554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.76 E-value=3.1e+02 Score=21.12 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=25.5
Q ss_pred cchhHHHHHHhhHHHHHHHHHHH--HhcCcCcHHHHHHHHHHHHHHHH
Q 023258 177 LPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 177 ~~~~~a~~l~~~~Pl~~~ll~~~--~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+.+....+.....+...+...+ .+-||.+++..+...+.+.++..
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 103 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 44555666665555544444333 24588888877655555444433
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=11.09 E-value=3.2e+02 Score=20.78 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 023258 192 MASIAARIILREKLKIAEIGGLALSFFGVLF 222 (285)
Q Consensus 192 ~~~ll~~~~l~e~~~~~~~ig~~l~l~Gv~l 222 (285)
.+.++.++++.+|.-..+++-=.+++..++.
T Consensus 37 ~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 37 LSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp HHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 3444445555555555555544444444443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.92 E-value=1.2e+02 Score=15.85 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023258 90 YSGLMCMALSSTIYFFMQ 107 (285)
Q Consensus 90 ~~G~l~~l~a~~~~a~~~ 107 (285)
++|+++.+.-+++++.+.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678988888888887654
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.03 E-value=1.1e+02 Score=15.05 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.4
Q ss_pred HHHhcCcCc
Q 023258 198 RIILREKLK 206 (285)
Q Consensus 198 ~~~l~e~~~ 206 (285)
.++++|+++
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 345677664
No 7
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=6.37 E-value=4.8e+02 Score=19.25 Aligned_cols=6 Identities=0% Similarity=-0.718 Sum_probs=2.9
Q ss_pred HHHHHH
Q 023258 265 ITGGIS 270 (285)
Q Consensus 265 ~~~A~~ 270 (285)
++|++|
T Consensus 182 v~W~iY 187 (239)
T d1e12a_ 182 VLWLGY 187 (239)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445544
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.28 E-value=3.3e+02 Score=17.17 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023258 253 HMLAVLVGLFSSITGGISYCLIKAGAN 279 (285)
Q Consensus 253 ~~~G~l~~llsa~~~A~~~v~~r~l~~ 279 (285)
....+...+...+.+...+++.|+-.+
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345566666667777777888876444
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.78 E-value=7.7e+02 Score=19.81 Aligned_cols=23 Identities=0% Similarity=0.008 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 023258 116 QSIPLFETVFMRCTVTLILSYLW 138 (285)
Q Consensus 116 ~~~~p~~~~~~R~~~a~l~l~~~ 138 (285)
..++|.+++++-++.-.+..+.+
T Consensus 263 ~pl~~~qILwinli~d~lpaiaL 285 (472)
T d1wpga4 263 EALIPVQLLWVNLVTDGLPATAL 285 (472)
T ss_dssp CSCCHHHHHHHHHTTTHHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHHHHHH
Confidence 46889999998887765544444
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.23 E-value=3.8e+02 Score=15.41 Aligned_cols=18 Identities=22% Similarity=0.013 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023258 255 LAVLVGLFSSITGGISYC 272 (285)
Q Consensus 255 ~G~l~~llsa~~~A~~~v 272 (285)
-|+.+.+++.++|.++.+
T Consensus 30 ~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555433
Done!