Query 023259
Match_columns 285
No_of_seqs 165 out of 1177
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 2.1E-38 4.5E-43 289.2 6.9 240 5-270 4-261 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 5.7E-34 1.2E-38 243.9 12.8 155 94-268 1-157 (162)
3 TIGR02245 HAD_IIID1 HAD-superf 100.0 2.8E-32 6E-37 240.1 11.4 144 91-269 18-192 (195)
4 PF03031 NIF: NLI interacting 100.0 1.1E-31 2.4E-36 227.1 12.3 148 95-267 1-151 (159)
5 TIGR02250 FCP1_euk FCP1-like p 100.0 8.7E-30 1.9E-34 217.2 13.1 142 92-250 4-154 (156)
6 KOG2832 TFIIF-interacting CTD 100.0 4.4E-28 9.5E-33 226.7 13.0 143 90-268 185-343 (393)
7 smart00577 CPDc catalytic doma 99.9 1.3E-26 2.9E-31 195.1 13.3 147 93-257 1-148 (148)
8 COG5190 FCP1 TFIIF-interacting 99.8 2.8E-21 6.1E-26 184.8 8.8 153 85-258 203-355 (390)
9 KOG0323 TFIIF-interacting CTD 99.7 4.8E-17 1.1E-21 163.5 10.5 143 93-250 145-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.9 1.4E-09 3E-14 94.6 5.4 101 152-252 44-159 (174)
11 TIGR01454 AHBA_synth_RP 3-amin 98.8 8.4E-10 1.8E-14 96.5 1.6 96 152-247 74-172 (205)
12 PLN03243 haloacid dehalogenase 98.8 1.2E-09 2.7E-14 100.3 2.6 99 152-250 108-209 (260)
13 PRK14988 GMP/IMP nucleotidase; 98.8 1E-09 2.2E-14 98.3 1.5 94 152-245 92-188 (224)
14 TIGR01681 HAD-SF-IIIC HAD-supe 98.8 2.5E-09 5.4E-14 88.0 3.6 82 153-236 29-121 (128)
15 PRK13288 pyrophosphatase PpaX; 98.8 1.7E-09 3.8E-14 95.1 2.8 96 152-247 81-179 (214)
16 PRK13226 phosphoglycolate phos 98.8 3.1E-09 6.7E-14 95.1 3.0 96 152-247 94-192 (229)
17 PRK11587 putative phosphatase; 98.8 3E-09 6.5E-14 94.2 2.8 98 152-250 82-182 (218)
18 TIGR01993 Pyr-5-nucltdase pyri 98.7 1.6E-09 3.5E-14 93.2 0.0 93 152-246 83-181 (184)
19 PLN02575 haloacid dehalogenase 98.7 5.8E-09 1.3E-13 100.8 3.3 99 152-250 215-316 (381)
20 TIGR01662 HAD-SF-IIIA HAD-supe 98.7 4.2E-08 9E-13 80.0 7.4 92 152-245 24-126 (132)
21 PRK10725 fructose-1-P/6-phosph 98.7 2.2E-09 4.7E-14 92.2 -0.3 95 152-247 87-183 (188)
22 COG0637 Predicted phosphatase/ 98.7 7.2E-09 1.6E-13 92.8 1.9 100 152-251 85-187 (221)
23 PRK10826 2-deoxyglucose-6-phos 98.6 1.7E-08 3.7E-13 89.4 3.5 98 152-249 91-191 (222)
24 PRK13223 phosphoglycolate phos 98.6 3E-08 6.5E-13 91.4 4.5 94 152-245 100-196 (272)
25 TIGR03351 PhnX-like phosphonat 98.6 9.4E-09 2E-13 90.6 1.0 95 152-246 86-186 (220)
26 PLN02940 riboflavin kinase 98.6 7.1E-09 1.5E-13 100.2 -0.2 96 152-247 92-191 (382)
27 PHA03398 viral phosphatase sup 98.6 2.6E-07 5.6E-12 86.4 10.0 126 91-258 125-285 (303)
28 COG4996 Predicted phosphatase 98.6 1.3E-07 2.8E-12 78.4 7.1 122 96-237 2-130 (164)
29 PRK13225 phosphoglycolate phos 98.6 1.8E-08 3.9E-13 93.2 2.1 95 152-247 141-236 (273)
30 cd01427 HAD_like Haloacid deha 98.6 3.6E-08 7.8E-13 77.9 3.5 89 152-240 23-130 (139)
31 TIGR00213 GmhB_yaeD D,D-heptos 98.6 1.4E-07 3E-12 81.2 7.2 93 152-246 25-146 (176)
32 TIGR01656 Histidinol-ppas hist 98.6 8.4E-08 1.8E-12 80.3 5.0 92 152-245 26-140 (147)
33 PRK13222 phosphoglycolate phos 98.5 4.6E-08 1E-12 86.1 3.0 94 152-245 92-188 (226)
34 PRK10563 6-phosphogluconate ph 98.5 1E-08 2.3E-13 90.5 -1.2 96 152-249 87-185 (221)
35 TIGR01684 viral_ppase viral ph 98.5 3.9E-07 8.5E-12 85.1 8.0 125 92-258 124-283 (301)
36 PRK08942 D,D-heptose 1,7-bisph 98.5 5.2E-07 1.1E-11 77.8 7.5 92 152-245 28-142 (181)
37 TIGR01261 hisB_Nterm histidino 98.4 4.2E-07 9.1E-12 77.9 6.6 98 152-251 28-148 (161)
38 TIGR01686 FkbH FkbH-like domai 98.4 3.2E-07 7E-12 86.5 6.2 81 154-237 32-117 (320)
39 PHA02597 30.2 hypothetical pro 98.4 3.7E-08 8E-13 85.6 -0.6 98 152-252 73-176 (197)
40 TIGR01549 HAD-SF-IA-v1 haloaci 98.4 8.3E-08 1.8E-12 79.9 1.0 82 152-236 63-147 (154)
41 TIGR00338 serB phosphoserine p 98.4 4E-07 8.7E-12 80.2 5.1 97 152-249 84-193 (219)
42 PF12689 Acid_PPase: Acid Phos 98.3 1.3E-06 2.8E-11 75.7 7.2 81 151-236 43-137 (169)
43 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.3 8.4E-07 1.8E-11 76.5 5.7 95 152-246 79-186 (201)
44 PHA02530 pseT polynucleotide k 98.3 9.8E-07 2.1E-11 81.6 5.6 131 90-250 154-296 (300)
45 PLN02919 haloacid dehalogenase 98.3 7.6E-07 1.6E-11 96.2 5.1 97 154-250 162-262 (1057)
46 TIGR01664 DNA-3'-Pase DNA 3'-p 98.3 3.3E-06 7.2E-11 72.6 7.9 90 154-245 43-157 (166)
47 COG0546 Gph Predicted phosphat 98.2 9.5E-07 2.1E-11 78.7 3.9 95 152-246 88-185 (220)
48 PF13419 HAD_2: Haloacid dehal 98.2 9.6E-07 2.1E-11 73.2 3.2 95 151-245 75-172 (176)
49 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 1.8E-06 4E-11 73.0 4.0 93 152-245 84-179 (183)
50 TIGR01672 AphA HAD superfamily 98.1 2.1E-06 4.5E-11 78.2 4.3 89 153-246 114-207 (237)
51 PLN02770 haloacid dehalogenase 98.1 2E-06 4.3E-11 78.1 3.7 98 152-249 107-207 (248)
52 TIGR02253 CTE7 HAD superfamily 98.1 2.1E-06 4.6E-11 75.4 3.8 95 152-246 93-191 (221)
53 PRK06769 hypothetical protein; 98.1 3E-06 6.5E-11 73.1 4.6 95 152-247 27-134 (173)
54 TIGR01489 DKMTPPase-SF 2,3-dik 98.1 7.7E-06 1.7E-10 69.6 6.9 92 152-243 71-182 (188)
55 TIGR01428 HAD_type_II 2-haloal 98.1 3E-06 6.4E-11 73.6 3.4 95 152-246 91-188 (198)
56 TIGR01449 PGP_bact 2-phosphogl 98.0 3.8E-06 8.2E-11 73.3 3.6 98 152-249 84-184 (213)
57 PRK09552 mtnX 2-hydroxy-3-keto 98.0 1.2E-05 2.7E-10 71.3 6.6 95 152-247 73-184 (219)
58 TIGR02254 YjjG/YfnB HAD superf 98.0 4.8E-06 1E-10 73.0 3.8 95 152-246 96-194 (224)
59 PRK09449 dUMP phosphatase; Pro 97.9 7.4E-06 1.6E-10 72.3 3.6 94 152-245 94-191 (224)
60 PRK09456 ?-D-glucose-1-phospha 97.9 7.6E-06 1.6E-10 71.4 3.4 111 151-267 82-196 (199)
61 TIGR02009 PGMB-YQAB-SF beta-ph 97.9 5.6E-06 1.2E-10 70.5 2.3 93 152-246 87-182 (185)
62 PRK13582 thrH phosphoserine ph 97.9 7E-06 1.5E-10 71.4 2.9 95 152-246 67-167 (205)
63 TIGR01668 YqeG_hyp_ppase HAD s 97.9 1.6E-05 3.5E-10 68.3 5.0 87 154-247 44-133 (170)
64 PRK05446 imidazole glycerol-ph 97.9 3.2E-05 6.9E-10 74.4 7.2 139 93-266 1-162 (354)
65 TIGR01422 phosphonatase phosph 97.9 1.2E-05 2.7E-10 72.6 4.0 99 152-250 98-201 (253)
66 TIGR02247 HAD-1A3-hyp Epoxide 97.8 8.4E-06 1.8E-10 71.4 2.1 112 152-269 93-209 (211)
67 PRK11009 aphA acid phosphatase 97.8 1.7E-05 3.7E-10 72.3 4.0 86 152-246 113-207 (237)
68 PF05152 DUF705: Protein of un 97.8 0.0002 4.3E-09 66.6 10.1 102 155-258 144-279 (297)
69 TIGR01663 PNK-3'Pase polynucle 97.7 8.5E-05 1.8E-09 74.9 7.8 113 92-236 166-297 (526)
70 KOG3109 Haloacid dehalogenase- 97.7 2.4E-05 5.1E-10 70.2 3.3 92 152-244 99-199 (244)
71 TIGR01670 YrbI-phosphatas 3-de 97.7 2.7E-05 5.9E-10 65.8 3.4 86 152-246 29-115 (154)
72 COG1011 Predicted hydrolase (H 97.7 5.6E-05 1.2E-09 66.4 5.2 94 152-245 98-194 (229)
73 PLN02954 phosphoserine phospha 97.7 4.9E-05 1.1E-09 67.1 4.8 92 152-245 83-191 (224)
74 PLN02779 haloacid dehalogenase 97.7 3.5E-05 7.5E-10 71.7 3.8 119 152-270 143-274 (286)
75 TIGR01990 bPGM beta-phosphoglu 97.6 3E-05 6.5E-10 66.0 2.8 93 152-246 86-181 (185)
76 TIGR01691 enolase-ppase 2,3-di 97.6 3E-05 6.5E-10 69.8 2.8 95 152-246 94-192 (220)
77 COG5190 FCP1 TFIIF-interacting 97.6 4.9E-05 1.1E-09 73.6 4.3 144 92-248 24-172 (390)
78 TIGR02252 DREG-2 REG-2-like, H 97.6 4.5E-05 9.9E-10 66.3 3.6 92 153-245 105-200 (203)
79 PRK13478 phosphonoacetaldehyde 97.6 8.2E-05 1.8E-09 68.0 4.7 98 152-249 100-202 (267)
80 TIGR02137 HSK-PSP phosphoserin 97.5 7.6E-05 1.7E-09 66.2 3.5 90 152-244 67-165 (203)
81 PRK11133 serB phosphoserine ph 97.5 0.0001 2.2E-09 70.0 4.2 96 152-247 180-288 (322)
82 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.00028 6.1E-09 61.3 6.0 82 154-236 107-191 (197)
83 PLN02811 hydrolase 97.4 0.0001 2.3E-09 65.3 3.0 98 152-249 77-183 (220)
84 KOG2914 Predicted haloacid-hal 97.3 6E-05 1.3E-09 68.1 0.5 96 152-247 91-193 (222)
85 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.3 0.00049 1.1E-08 62.1 6.3 77 154-233 25-105 (242)
86 PRK08238 hypothetical protein; 97.3 0.0007 1.5E-08 67.6 7.9 91 152-247 71-165 (479)
87 PRK06698 bifunctional 5'-methy 97.3 0.00023 5E-09 70.3 3.8 93 152-246 329-423 (459)
88 PRK09484 3-deoxy-D-manno-octul 97.1 0.00022 4.7E-09 62.0 1.8 79 161-246 56-135 (183)
89 PF08645 PNK3P: Polynucleotide 97.1 0.0028 6.1E-08 54.2 8.4 81 152-235 28-130 (159)
90 TIGR01493 HAD-SF-IA-v2 Haloaci 97.1 0.00015 3.3E-09 61.4 0.2 79 152-236 89-169 (175)
91 TIGR01533 lipo_e_P4 5'-nucleot 96.9 0.003 6.4E-08 58.6 7.1 80 152-236 117-201 (266)
92 COG0560 SerB Phosphoserine pho 96.8 0.0031 6.7E-08 56.4 6.2 95 152-246 76-185 (212)
93 PRK10748 flavin mononucleotide 96.7 0.0008 1.7E-08 60.6 2.3 90 152-246 112-204 (238)
94 PTZ00445 p36-lilke protein; Pr 96.7 0.0011 2.4E-08 59.4 2.8 135 90-251 39-206 (219)
95 COG3882 FkbH Predicted enzyme 96.7 0.0016 3.4E-08 64.6 3.7 132 92-250 220-355 (574)
96 PF13344 Hydrolase_6: Haloacid 96.5 0.0063 1.4E-07 48.0 5.9 38 155-192 16-54 (101)
97 COG2179 Predicted hydrolase of 96.4 0.0069 1.5E-07 52.4 5.8 113 90-250 24-141 (175)
98 COG0241 HisB Histidinol phosph 96.4 0.0061 1.3E-07 53.5 5.5 99 152-250 30-152 (181)
99 PRK11590 hypothetical protein; 96.4 0.0017 3.7E-08 57.4 1.8 39 152-190 94-134 (211)
100 TIGR01689 EcbF-BcbF capsule bi 96.4 0.014 3E-07 48.3 7.0 49 154-202 25-87 (126)
101 PRK00192 mannosyl-3-phosphogly 96.2 0.013 2.7E-07 53.8 6.4 40 155-194 23-63 (273)
102 TIGR02726 phenyl_P_delta pheny 96.2 0.0038 8.3E-08 54.0 2.8 75 167-248 49-123 (169)
103 PF09419 PGP_phosphatase: Mito 96.1 0.024 5.2E-07 49.2 7.5 96 90-234 37-147 (168)
104 TIGR01544 HAD-SF-IE haloacid d 96.1 0.014 3E-07 54.5 6.2 86 152-237 120-225 (277)
105 COG0561 Cof Predicted hydrolas 95.9 0.02 4.4E-07 51.8 6.4 59 93-193 2-61 (264)
106 TIGR01487 SPP-like sucrose-pho 95.7 0.03 6.4E-07 49.2 6.5 39 155-193 20-59 (215)
107 TIGR03333 salvage_mtnX 2-hydro 95.6 0.019 4.1E-07 50.7 5.1 93 152-244 69-177 (214)
108 PF06888 Put_Phosphatase: Puta 95.5 0.016 3.5E-07 52.8 4.4 53 152-204 70-125 (234)
109 COG4359 Uncharacterized conser 95.5 0.052 1.1E-06 47.9 7.1 42 152-193 72-114 (220)
110 PRK01158 phosphoglycolate phos 95.4 0.042 9.2E-07 48.4 6.6 39 155-193 22-61 (230)
111 PRK10513 sugar phosphate phosp 95.4 0.053 1.2E-06 49.1 7.4 37 156-192 23-60 (270)
112 PF08282 Hydrolase_3: haloacid 95.4 0.036 7.8E-07 48.3 6.0 38 155-192 17-55 (254)
113 PLN02645 phosphoglycolate phos 95.2 0.037 8E-07 52.0 5.7 35 156-190 47-82 (311)
114 PRK10444 UMP phosphatase; Prov 95.2 0.042 9.1E-07 50.2 5.8 37 155-191 19-56 (248)
115 PRK10530 pyridoxal phosphate ( 95.1 0.063 1.4E-06 48.4 6.7 15 94-108 3-17 (272)
116 PRK15126 thiamin pyrimidine py 95.1 0.056 1.2E-06 49.2 6.4 15 94-108 2-16 (272)
117 TIGR00099 Cof-subfamily Cof su 95.0 0.056 1.2E-06 48.7 6.1 38 155-192 18-56 (256)
118 TIGR02463 MPGP_rel mannosyl-3- 95.0 0.065 1.4E-06 47.1 6.3 35 158-192 21-56 (221)
119 TIGR01488 HAD-SF-IB Haloacid D 95.0 0.039 8.4E-07 46.4 4.7 84 152-235 72-170 (177)
120 TIGR02461 osmo_MPG_phos mannos 94.9 0.061 1.3E-06 48.2 6.1 37 156-192 18-55 (225)
121 PRK10976 putative hydrolase; P 94.9 0.07 1.5E-06 48.3 6.4 15 94-108 2-16 (266)
122 PRK03669 mannosyl-3-phosphogly 94.9 0.067 1.5E-06 48.9 6.3 35 158-192 29-64 (271)
123 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.8 0.055 1.2E-06 49.5 5.4 35 155-189 23-58 (257)
124 COG4502 5'(3')-deoxyribonucleo 94.7 0.097 2.1E-06 44.4 6.2 83 152-250 67-154 (180)
125 smart00775 LNS2 LNS2 domain. T 94.5 0.085 1.9E-06 44.9 5.6 36 154-189 28-67 (157)
126 PRK12702 mannosyl-3-phosphogly 94.3 0.13 2.8E-06 48.6 6.8 36 158-193 23-59 (302)
127 TIGR01452 PGP_euk phosphoglyco 94.2 0.11 2.5E-06 47.8 6.2 35 155-189 20-55 (279)
128 TIGR01482 SPP-subfamily Sucros 94.0 0.12 2.5E-06 45.3 5.7 33 158-190 20-53 (225)
129 TIGR01456 CECR5 HAD-superfamil 93.9 0.096 2.1E-06 49.5 5.3 36 155-190 18-62 (321)
130 TIGR01486 HAD-SF-IIB-MPGP mann 93.9 0.11 2.3E-06 47.1 5.4 36 157-192 20-56 (256)
131 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.7 0.15 3.2E-06 46.4 6.0 34 156-189 20-54 (249)
132 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.7 0.054 1.2E-06 46.7 2.9 89 152-240 86-188 (202)
133 TIGR01484 HAD-SF-IIB HAD-super 93.6 0.14 3E-06 44.4 5.4 36 155-190 19-55 (204)
134 PF11019 DUF2608: Protein of u 93.4 0.089 1.9E-06 48.3 3.9 101 152-252 80-211 (252)
135 KOG3085 Predicted hydrolase (H 93.4 0.039 8.4E-07 50.4 1.5 90 152-243 113-206 (237)
136 PRK14502 bifunctional mannosyl 93.3 0.31 6.8E-06 50.8 8.0 64 87-192 409-473 (694)
137 COG0647 NagD Predicted sugar p 92.9 0.18 3.9E-06 46.9 5.2 37 155-191 26-63 (269)
138 PTZ00174 phosphomannomutase; P 92.9 0.24 5.1E-06 44.8 5.9 16 93-108 4-19 (247)
139 KOG3120 Predicted haloacid deh 92.8 0.04 8.7E-07 49.9 0.6 55 152-206 83-139 (256)
140 TIGR01460 HAD-SF-IIA Haloacid 92.6 0.23 4.9E-06 44.7 5.3 32 156-187 17-53 (236)
141 TIGR01675 plant-AP plant acid 91.9 0.21 4.5E-06 45.5 4.2 50 153-202 120-172 (229)
142 PLN02423 phosphomannomutase 91.4 0.42 9.1E-06 43.4 5.7 16 93-108 6-21 (245)
143 PLN02887 hydrolase family prot 91.3 0.43 9.3E-06 49.0 6.2 61 89-191 303-364 (580)
144 TIGR01485 SPP_plant-cyano sucr 90.8 0.39 8.4E-06 43.3 4.8 36 155-190 23-59 (249)
145 TIGR01511 ATPase-IB1_Cu copper 90.7 0.43 9.2E-06 48.7 5.6 85 152-246 404-489 (562)
146 TIGR01548 HAD-SF-IA-hyp1 haloa 90.3 0.12 2.6E-06 44.7 1.0 15 96-110 2-16 (197)
147 PRK10187 trehalose-6-phosphate 89.7 0.63 1.4E-05 42.8 5.3 16 93-108 13-28 (266)
148 PF03767 Acid_phosphat_B: HAD 89.6 0.37 8.1E-06 43.5 3.7 41 153-193 115-156 (229)
149 PF00702 Hydrolase: haloacid d 89.5 0.54 1.2E-05 40.2 4.5 78 152-234 126-206 (215)
150 COG2503 Predicted secreted aci 89.1 0.54 1.2E-05 43.2 4.3 41 152-192 121-163 (274)
151 TIGR02253 CTE7 HAD superfamily 88.5 0.27 5.8E-06 42.9 1.8 17 94-110 2-18 (221)
152 TIGR02009 PGMB-YQAB-SF beta-ph 88.3 0.24 5.2E-06 41.8 1.4 15 95-109 2-16 (185)
153 PF06941 NT5C: 5' nucleotidase 87.9 0.84 1.8E-05 39.5 4.6 80 152-247 72-159 (191)
154 TIGR02252 DREG-2 REG-2-like, H 87.7 0.28 6E-06 42.4 1.4 15 95-109 1-15 (203)
155 TIGR01422 phosphonatase phosph 87.4 0.33 7.2E-06 43.6 1.8 16 94-109 2-17 (253)
156 PRK13478 phosphonoacetaldehyde 87.3 0.3 6.5E-06 44.5 1.5 16 94-109 4-19 (267)
157 PLN02770 haloacid dehalogenase 87.3 0.34 7.4E-06 43.8 1.9 17 93-109 21-37 (248)
158 COG4229 Predicted enolase-phos 87.2 0.4 8.7E-06 42.4 2.1 93 152-245 102-199 (229)
159 PRK10748 flavin mononucleotide 87.1 0.3 6.5E-06 43.8 1.4 16 94-109 10-25 (238)
160 TIGR02244 HAD-IG-Ncltidse HAD 86.7 0.93 2E-05 43.7 4.5 53 149-201 180-241 (343)
161 TIGR01990 bPGM beta-phosphoglu 86.3 0.29 6.3E-06 41.3 0.7 15 96-110 1-15 (185)
162 TIGR01680 Veg_Stor_Prot vegeta 86.0 2.2 4.7E-05 39.9 6.4 50 154-203 146-198 (275)
163 TIGR01449 PGP_bact 2-phosphogl 85.4 0.32 7E-06 42.1 0.6 13 97-109 1-13 (213)
164 PLN02779 haloacid dehalogenase 85.0 0.49 1.1E-05 43.9 1.7 17 93-109 39-55 (286)
165 TIGR01493 HAD-SF-IA-v2 Haloaci 84.9 0.43 9.4E-06 40.0 1.2 13 97-109 2-14 (175)
166 TIGR01428 HAD_type_II 2-haloal 84.7 0.48 1E-05 40.8 1.4 15 95-109 2-16 (198)
167 TIGR02254 YjjG/YfnB HAD superf 84.7 0.47 1E-05 41.2 1.4 15 95-109 2-16 (224)
168 TIGR01512 ATPase-IB2_Cd heavy 84.6 0.59 1.3E-05 47.3 2.2 87 152-247 361-449 (536)
169 TIGR00685 T6PP trehalose-phosp 84.2 1.2 2.6E-05 40.1 3.8 15 93-107 2-16 (244)
170 PRK09449 dUMP phosphatase; Pro 83.9 0.52 1.1E-05 41.3 1.3 14 94-107 3-16 (224)
171 TIGR02247 HAD-1A3-hyp Epoxide 83.3 0.66 1.4E-05 40.3 1.7 14 95-108 3-16 (211)
172 COG1877 OtsB Trehalose-6-phosp 82.4 2.3 5E-05 39.5 5.0 60 91-187 15-76 (266)
173 PLN03017 trehalose-phosphatase 82.3 2.2 4.7E-05 41.5 4.9 17 91-107 108-124 (366)
174 TIGR01525 ATPase-IB_hvy heavy 82.2 1.1 2.3E-05 45.6 3.0 86 152-246 383-470 (556)
175 PLN02151 trehalose-phosphatase 81.7 2.6 5.7E-05 40.8 5.2 16 92-107 96-111 (354)
176 TIGR01509 HAD-SF-IA-v3 haloaci 80.1 0.78 1.7E-05 38.3 0.9 14 96-109 1-14 (183)
177 PLN02580 trehalose-phosphatase 80.1 3.4 7.4E-05 40.4 5.4 61 91-188 116-176 (384)
178 PF13419 HAD_2: Haloacid dehal 79.9 0.86 1.9E-05 37.1 1.1 13 97-109 1-13 (176)
179 PF08235 LNS2: LNS2 (Lipin/Ned 79.8 3.8 8.2E-05 35.2 5.0 37 153-189 27-64 (157)
180 PRK06698 bifunctional 5'-methy 77.4 0.96 2.1E-05 44.7 0.8 17 94-110 241-257 (459)
181 PRK14501 putative bifunctional 75.2 4.3 9.4E-05 42.6 5.0 35 155-189 516-552 (726)
182 COG3769 Predicted hydrolase (H 73.7 9.5 0.00021 34.9 6.0 34 160-193 30-64 (274)
183 TIGR01545 YfhB_g-proteo haloac 71.7 8.4 0.00018 34.1 5.3 37 153-189 94-132 (210)
184 PLN02382 probable sucrose-phos 71.7 7.9 0.00017 38.1 5.6 17 92-108 7-23 (413)
185 PF05116 S6PP: Sucrose-6F-phos 71.4 7.1 0.00015 35.4 4.8 13 94-106 2-14 (247)
186 PF05822 UMPH-1: Pyrimidine 5' 70.8 4.6 0.0001 37.2 3.5 87 151-237 88-193 (246)
187 PF12710 HAD: haloacid dehalog 70.6 6.6 0.00014 33.0 4.2 45 155-199 87-138 (192)
188 KOG4549 Magnesium-dependent ph 69.4 28 0.00061 29.2 7.4 84 152-235 43-134 (144)
189 TIGR01545 YfhB_g-proteo haloac 69.3 2.6 5.7E-05 37.3 1.5 16 93-108 4-19 (210)
190 PRK09456 ?-D-glucose-1-phospha 69.1 2.8 6E-05 36.2 1.6 13 96-108 2-14 (199)
191 COG1011 Predicted hydrolase (H 69.1 2.9 6.4E-05 36.3 1.8 16 93-108 3-18 (229)
192 PLN02177 glycerol-3-phosphate 67.2 5.2 0.00011 40.4 3.3 26 167-192 121-147 (497)
193 PF12710 HAD: haloacid dehalog 64.5 3.9 8.4E-05 34.4 1.5 12 97-108 1-12 (192)
194 TIGR01488 HAD-SF-IB Haloacid D 64.4 3 6.4E-05 34.8 0.8 12 97-108 2-13 (177)
195 TIGR01459 HAD-SF-IIA-hyp4 HAD- 64.4 0.79 1.7E-05 41.2 -2.9 90 155-245 140-236 (242)
196 PRK10671 copA copper exporting 61.5 6 0.00013 42.3 2.6 85 153-246 650-735 (834)
197 TIGR02471 sucr_syn_bact_C sucr 59.9 4.1 8.9E-05 36.2 0.9 22 217-238 169-190 (236)
198 KOG3107 Predicted haloacid deh 59.8 13 0.00027 36.6 4.2 15 93-107 196-210 (468)
199 PLN02205 alpha,alpha-trehalose 59.8 16 0.00034 39.5 5.4 16 93-108 595-610 (854)
200 TIGR01490 HAD-SF-IB-hyp1 HAD-s 59.1 4.7 0.0001 34.5 1.1 12 97-108 2-13 (202)
201 PF02358 Trehalose_PPase: Treh 57.2 14 0.0003 32.9 3.9 32 153-184 19-52 (235)
202 TIGR01458 HAD-SF-IIA-hyp3 HAD- 56.0 1 2.3E-05 41.0 -3.7 35 211-245 184-219 (257)
203 PLN03063 alpha,alpha-trehalose 54.8 21 0.00046 38.2 5.3 15 93-107 506-520 (797)
204 TIGR01497 kdpB K+-transporting 53.8 9.3 0.0002 40.1 2.4 42 153-194 446-488 (675)
205 PRK01122 potassium-transportin 52.1 12 0.00026 39.3 3.0 41 153-193 445-486 (679)
206 PRK14010 potassium-transportin 49.3 14 0.0003 38.9 2.9 42 153-194 441-483 (673)
207 PLN03064 alpha,alpha-trehalose 49.1 35 0.00076 37.3 5.9 37 153-189 622-660 (934)
208 PF00702 Hydrolase: haloacid d 47.7 11 0.00025 31.9 1.7 14 95-108 2-15 (215)
209 cd06539 CIDE_N_A CIDE_N domain 45.7 38 0.00083 25.8 4.0 16 93-108 39-54 (78)
210 cd06537 CIDE_N_B CIDE_N domain 45.7 37 0.00081 26.0 4.0 16 93-108 38-53 (81)
211 PLN02499 glycerol-3-phosphate 45.4 14 0.0003 37.4 2.1 24 169-192 109-133 (498)
212 cd02514 GT13_GLCNAC-TI GT13_GL 43.6 23 0.0005 34.0 3.2 40 150-189 6-52 (334)
213 KOG2134 Polynucleotide kinase 39.8 40 0.00087 33.2 4.2 17 92-108 73-89 (422)
214 smart00266 CAD Domains present 39.6 50 0.0011 24.9 3.8 16 93-108 37-52 (74)
215 PF06941 NT5C: 5' nucleotidase 38.8 19 0.00042 30.9 1.8 16 94-109 2-17 (191)
216 cd01615 CIDE_N CIDE_N domain, 38.5 54 0.0012 24.9 3.9 17 92-108 38-54 (78)
217 cd06536 CIDE_N_ICAD CIDE_N dom 38.1 54 0.0012 25.1 3.8 16 93-108 41-56 (80)
218 cd06538 CIDE_N_FSP27 CIDE_N do 38.1 48 0.001 25.3 3.5 15 94-108 39-53 (79)
219 TIGR03333 salvage_mtnX 2-hydro 34.7 19 0.00042 31.5 1.1 12 97-108 2-13 (214)
220 PF04312 DUF460: Protein of un 34.0 1.5E+02 0.0033 24.9 6.3 13 98-110 47-59 (138)
221 PLN02588 glycerol-3-phosphate 29.8 73 0.0016 32.6 4.3 17 93-109 49-65 (525)
222 KOG1615 Phosphoserine phosphat 29.0 97 0.0021 28.0 4.5 96 152-249 87-198 (227)
223 TIGR01452 PGP_euk phosphoglyco 25.9 6 0.00013 36.3 -3.9 90 155-244 145-241 (279)
224 PRK11033 zntA zinc/cadmium/mer 25.4 87 0.0019 33.2 4.2 83 152-245 567-650 (741)
225 KOG3040 Predicted sugar phosph 25.3 1.1E+02 0.0024 27.9 4.3 36 155-190 25-61 (262)
226 KOG3189 Phosphomannomutase [Li 25.3 98 0.0021 28.1 3.9 17 92-108 9-25 (252)
227 TIGR01658 EYA-cons_domain eyes 24.9 35 0.00075 31.7 1.0 12 95-106 3-14 (274)
228 PF05761 5_nucleotid: 5' nucle 20.9 1.3E+02 0.0029 30.1 4.3 52 149-200 179-240 (448)
229 COG1778 Low specificity phosph 20.5 59 0.0013 28.3 1.5 80 163-249 45-125 (170)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.1e-38 Score=289.22 Aligned_cols=240 Identities=35% Similarity=0.413 Sum_probs=166.9
Q ss_pred ccceeEecchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcccccCCCccCccccC--CCCCCCccccccc-ccC
Q 023259 5 TQAEVAYSHRSIQVWRTLLNWLAFFFQIFAKILRALGHHPLLSSSASASTHAFKPLQVVEL--PETDSSATVDIGA-VRD 81 (285)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~-~~~ 81 (285)
+.+.+ ++ +..+.|...+.|.....+. ......+...+.+..+.+.+....+.+.- .-...+ ..+... ..-
T Consensus 4 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 76 (262)
T KOG1605|consen 4 SITTA-TT-KNDEEQKPGLDSSTRDVET----AMMLVEDSSQSSSNASSAFSPEFDEELYSEDLFEKYQ-PVKYASQTPL 76 (262)
T ss_pred cceeh-hh-cCchhhccccccccccccc----cceeccccccchhhhhhccccccchhhhhhhhhhhcc-cccccccccc
Confidence 34455 77 8888888888888777765 11122222222221111122222221111 000111 111111 111
Q ss_pred CCCCCcccccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHH
Q 023259 82 SGDDVVSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREF 161 (285)
Q Consensus 82 ~~~~~~~~~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eF 161 (285)
+..........+|++|||||||||+||... +++.. . + .|.+ ++..+|. ...+||.+|||+++|
T Consensus 77 ~~~~~~~~~~~~kk~lVLDLDeTLvHss~~--~~~~~-~----~---d~~~-----~v~~~~~--~~~~yV~kRP~vdeF 139 (262)
T KOG1605|consen 77 SPVLPLRLATVGRKTLVLDLDETLVHSSLN--LKPIV-N----A---DFTV-----PVEIDGH--IHQVYVRKRPHVDEF 139 (262)
T ss_pred cccCCcccccCCCceEEEeCCCcccccccc--cCCCC-C----c---ceee-----eeeeCCc--ceEEEEEcCCCHHHH
Confidence 112222344679999999999999997420 11100 0 0 1222 2233332 356899999999999
Q ss_pred HHHhhhcceEEEEccCchhhHHHHHHHhcC-CCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCC
Q 023259 162 LKQLSEFADLILFTAGLEGYARPLVDRIDG-ENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQP 240 (285)
Q Consensus 162 L~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp-~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p 240 (285)
|+.++++||+++|||+.+.||.+|++.||+ .+.|.+|+||++|... +|.|+|||..+|+|+++||||||+|.+|.+||
T Consensus 140 L~~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~-~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p 218 (262)
T KOG1605|consen 140 LSRVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLK-DGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQP 218 (262)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeE-CCcEEEEcceeccCcccEEEEcCChHHhccCc
Confidence 999999999999999999999999999999 6789999999999976 59999999999999999999999999999999
Q ss_pred CCeeeeCccCCCCCCCCc--------------cCcHHHHHhhcC
Q 023259 241 LNGIPCIPFSAGQPHDNQ--------------KDVRPELYERFH 270 (285)
Q Consensus 241 ~NgI~I~~F~~g~~~D~~--------------~DVR~vL~~~f~ 270 (285)
+|||+|++|. .++.|++ +|||+++++.|+
T Consensus 219 ~NgIpI~sw~-~d~~D~eLL~LlpfLe~L~~~~Dvr~~l~~~~~ 261 (262)
T KOG1605|consen 219 ENGIPIKSWF-DDPTDTELLKLLPFLEALAFVDDVRPILARRFG 261 (262)
T ss_pred cCCCcccccc-cCCChHHHHHHHHHHHHhcccccHHHHHHHhhc
Confidence 9999999997 7788988 999999999876
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=5.7e-34 Score=243.95 Aligned_cols=155 Identities=43% Similarity=0.638 Sum_probs=129.2
Q ss_pred ceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcceEEE
Q 023259 94 KLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFADLIL 173 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~yeIvI 173 (285)
|++|||||||||||+.+... . ... .|.+.+ ...| ....+||++|||++|||++|+++|+|+|
T Consensus 1 k~~lvlDLDeTLi~~~~~~~--~--------~~~-~~~~~~-----~~~~--~~~~~~v~~RPgl~eFL~~l~~~yei~I 62 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMP--K--------VDA-DFKVPV-----LIDG--KIIPVYVFKRPHVDEFLERVSKWYELVI 62 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCC--C--------CCC-ceEEEE-----EecC--cEEEEEEEECCCHHHHHHHHHhcCEEEE
Confidence 68999999999999854321 0 000 121111 1112 1357899999999999999999999999
Q ss_pred EccCchhhHHHHHHHhcCCC-ceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCeeeeCccCCC
Q 023259 174 FTAGLEGYARPLVDRIDGEN-LFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAG 252 (285)
Q Consensus 174 ~Ta~~~~YA~~Vl~~LDp~~-~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g 252 (285)
||++.+.||+++++.|||.+ +|.++++|++|...+ +.+.|||+.+|++++++|+|||++..+..+++|||+|.+|. |
T Consensus 63 ~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~-~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~-~ 140 (162)
T TIGR02251 63 FTASLEEYADPVLDILDRGGKVISRRLYRESCVFTN-GKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF-G 140 (162)
T ss_pred EcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeC-CCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC-C
Confidence 99999999999999999987 899999999998764 56999999999999999999999999999999999999997 7
Q ss_pred CCCCCc-cCcHHHHHhh
Q 023259 253 QPHDNQ-KDVRPELYER 268 (285)
Q Consensus 253 ~~~D~~-~DVR~vL~~~ 268 (285)
+.+|++ .++.++|..-
T Consensus 141 ~~~D~~L~~l~~~L~~l 157 (162)
T TIGR02251 141 DPNDTELLNLIPFLEGL 157 (162)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 788888 8888888653
No 3
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.98 E-value=2.8e-32 Score=240.14 Aligned_cols=144 Identities=23% Similarity=0.292 Sum_probs=114.5
Q ss_pred cCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcce
Q 023259 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFAD 170 (285)
Q Consensus 91 ~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~ye 170 (285)
..+|++|||||||||||+.... ...++.+|||+++||++|+++||
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~-----------------------------------~~~~~~kRP~l~eFL~~~~~~fe 62 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPA-----------------------------------ETGEELMRPYLHEFLTSAYEDYD 62 (195)
T ss_pred CCCCcEEEEeCCCceEcccccC-----------------------------------CCceEEeCCCHHHHHHHHHhCCE
Confidence 4589999999999999852110 12458899999999999999999
Q ss_pred EEEEccCchhhHHHHHHHhcCCC--ceeEEEecCcccc-----cCCc-cccccccccCC------CCCcEEEEECCcccc
Q 023259 171 LILFTAGLEGYARPLVDRIDGEN--LFSLRLYRPSTTS-----TEYR-EHVKDLSCLSK------DLCRTLIVDNNPFSF 236 (285)
Q Consensus 171 IvI~Ta~~~~YA~~Vl~~LDp~~--~f~~~l~r~~c~~-----~k~~-~~~KdL~~Lgr------dl~~vVIVDDs~~~~ 236 (285)
|+||||+++.||+.+++.|++.. .+...++.++|.. .+.+ .++|||+.+|+ ++++||||||++.++
T Consensus 63 IvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~ 142 (195)
T TIGR02245 63 IVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNF 142 (195)
T ss_pred EEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHH
Confidence 99999999999999999997632 3444555577631 1223 35999998843 889999999999999
Q ss_pred cCCCCCeeeeCccCCC---CCCCCc--------------cCcHHHHHhhc
Q 023259 237 LLQPLNGIPCIPFSAG---QPHDNQ--------------KDVRPELYERF 269 (285)
Q Consensus 237 ~~~p~NgI~I~~F~~g---~~~D~~--------------~DVR~vL~~~f 269 (285)
..||+|||+|++|.++ +.+|++ +|||+++++.+
T Consensus 143 ~~~P~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w 192 (195)
T TIGR02245 143 LMNPQNGLKIRPFKKAHANRGTDQELLKLTQYLKTIAELEDFSSLDHKEW 192 (195)
T ss_pred hcCCCCccccCCccccCCCCcccHHHHHHHHHHHHHhcCcccchhhhccc
Confidence 9999999999999854 356665 78888877654
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.97 E-value=1.1e-31 Score=227.07 Aligned_cols=148 Identities=43% Similarity=0.661 Sum_probs=109.7
Q ss_pred eEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcceEEEE
Q 023259 95 LTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFADLILF 174 (285)
Q Consensus 95 ~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~yeIvI~ 174 (285)
|+|||||||||||+...+..+.. +.. . . ....++|++|||+++||++|+++|+|+||
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~------------~~~------~----~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~ 57 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYD------------FKI------I----D-QRGGYYVKLRPGLDEFLEELSKHYEVVIW 57 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-S------------EEE------E----T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE
T ss_pred CEEEEeCCCcEEEEeecCCCCcc------------cce------e----c-cccceeEeeCchHHHHHHHHHHhceEEEE
Confidence 68999999999998654322100 000 0 0 12467899999999999999999999999
Q ss_pred ccCchhhHHHHHHHhcCC-CceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCeeeeCccCCCC
Q 023259 175 TAGLEGYARPLVDRIDGE-NLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQ 253 (285)
Q Consensus 175 Ta~~~~YA~~Vl~~LDp~-~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g~ 253 (285)
|++++.||++|++.|+|. .+|.++++|++|...+ +.+.|||+++|+++++||+|||++.+|..+++|+|.|++|. ++
T Consensus 58 T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~-~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~-~~ 135 (159)
T PF03031_consen 58 TSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDK-GSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF-GD 135 (159)
T ss_dssp -SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEET-TEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S-SC
T ss_pred EeehhhhhhHHHHhhhhhccccccccccccccccc-cccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc-CC
Confidence 999999999999999994 6899999999998654 45689999999999999999999999999999999999998 55
Q ss_pred -CCCCc-cCcHHHHHh
Q 023259 254 -PHDNQ-KDVRPELYE 267 (285)
Q Consensus 254 -~~D~~-~DVR~vL~~ 267 (285)
++|++ .++.++|++
T Consensus 136 ~~~D~~L~~l~~~L~~ 151 (159)
T PF03031_consen 136 TPNDRELLRLLPFLEE 151 (159)
T ss_dssp HTT--HHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH
Confidence 67877 667777743
No 5
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=8.7e-30 Score=217.21 Aligned_cols=142 Identities=26% Similarity=0.364 Sum_probs=113.3
Q ss_pred CCceEEEEeCCCcccccccCCCCchhhc----cccc--ccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHh
Q 023259 92 LQKLTVVLDLDETLVCAYETSSLPVTLR----NQAT--GAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQL 165 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s~~~s~lp~~~~----~~~~--~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~l 165 (285)
.+|++||||||+|||||...+....... .... ..+...|.+. ....++++|||+.+||++|
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------------~~~~~v~~rPgv~efL~~l 70 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLG-------------TMWYLTKLRPFLHEFLKEA 70 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcC-------------CeEEEEEECCCHHHHHHHH
Confidence 4899999999999999976544333211 0000 0111122221 1357899999999999999
Q ss_pred hhcceEEEEccCchhhHHHHHHHhcCCC-ceeE-EEecCcccccCCccccccccc-cCCCCCcEEEEECCcccccCCCCC
Q 023259 166 SEFADLILFTAGLEGYARPLVDRIDGEN-LFSL-RLYRPSTTSTEYREHVKDLSC-LSKDLCRTLIVDNNPFSFLLQPLN 242 (285)
Q Consensus 166 s~~yeIvI~Ta~~~~YA~~Vl~~LDp~~-~f~~-~l~r~~c~~~k~~~~~KdL~~-Lgrdl~~vVIVDDs~~~~~~~p~N 242 (285)
++.|+++|||++.+.||+++++.|||.+ +|.. +++|++|. +.+.|||+. ++++++++|||||++.+|..||+|
T Consensus 71 ~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N 146 (156)
T TIGR02250 71 SKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRN 146 (156)
T ss_pred HhhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----CCccccHHHHcCCCcccEEEEeCCHHHhhcCccC
Confidence 9999999999999999999999999996 7845 57799985 578999955 589999999999999999999999
Q ss_pred eeeeCccC
Q 023259 243 GIPCIPFS 250 (285)
Q Consensus 243 gI~I~~F~ 250 (285)
||+|++|.
T Consensus 147 ~i~i~~~~ 154 (156)
T TIGR02250 147 LIQIEPYN 154 (156)
T ss_pred EEEeCCcc
Confidence 99999996
No 6
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.95 E-value=4.4e-28 Score=226.73 Aligned_cols=143 Identities=32% Similarity=0.498 Sum_probs=129.8
Q ss_pred ccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcc
Q 023259 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFA 169 (285)
Q Consensus 90 ~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~y 169 (285)
+.++++||||||.++|||..|+- -.+|.+++|||++-||.+|+++|
T Consensus 185 y~Qp~yTLVleledvLVhpdws~----------------------------------~tGwRf~kRPgvD~FL~~~a~~y 230 (393)
T KOG2832|consen 185 YEQPPYTLVLELEDVLVHPDWSY----------------------------------KTGWRFKKRPGVDYFLGHLAKYY 230 (393)
T ss_pred ccCCCceEEEEeeeeEeccchhh----------------------------------hcCceeccCchHHHHHHhhcccc
Confidence 56789999999999999954321 13467999999999999999999
Q ss_pred eEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCeeeeCcc
Q 023259 170 DLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 170 eIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F 249 (285)
||||||+....||.++++.+||+++++++++|++|.+. ++.++|||++|+||+.+||+||-+++++.+||+|.|.+++|
T Consensus 231 EIVi~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~-~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W 309 (393)
T KOG2832|consen 231 EIVVYSSEQGMTVFPLLDALDPKGYISYKLFRGATKYE-EGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPW 309 (393)
T ss_pred eEEEEecCCccchhhhHhhcCCcceEEEEEecCccccc-CccchhhhhhhccccceeEEEEccccccccCcccccccCcC
Confidence 99999999999999999999999999999999998876 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCc----------------cCcHHHHHhh
Q 023259 250 SAGQPHDNQ----------------KDVRPELYER 268 (285)
Q Consensus 250 ~~g~~~D~~----------------~DVR~vL~~~ 268 (285)
. |+.+|++ +|||++|+..
T Consensus 310 ~-Gn~dDt~L~dL~~FL~~ia~~~~eDvR~vL~~y 343 (393)
T KOG2832|consen 310 S-GNDDDTSLFDLLAFLEYIAQQQVEDVRPVLQSY 343 (393)
T ss_pred C-CCcccchhhhHHHHHHHHHHccHHHHHHHHHHh
Confidence 7 7778865 9999999643
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=1.3e-26 Score=195.11 Aligned_cols=147 Identities=40% Similarity=0.551 Sum_probs=119.5
Q ss_pred CceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcceEE
Q 023259 93 QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFADLI 172 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~yeIv 172 (285)
+|++|||||||||+|+...+..+....... . ..........+++.+|||+.|||++|++.|+++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~ 64 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFI---------V-------PVLIDGHPHGVYVKKRPGVDEFLKRASELFELV 64 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceE---------E-------EEEeCCceEEEEEEECCCHHHHHHHHHhccEEE
Confidence 589999999999999865443221111011 0 111112235678999999999999999889999
Q ss_pred EEccCchhhHHHHHHHhcCCC-ceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCeeeeCccCC
Q 023259 173 LFTAGLEGYARPLVDRIDGEN-LFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSA 251 (285)
Q Consensus 173 I~Ta~~~~YA~~Vl~~LDp~~-~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~ 251 (285)
|||++...|++.+++++++.+ +|..++++++|...+.. |.|+|+.+|++++++|+|||++..+..++.|||.|++|.
T Consensus 65 I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~- 142 (148)
T smart00577 65 VFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF- 142 (148)
T ss_pred EEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcC-
Confidence 999999999999999999965 45889999999877654 999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 023259 252 GQPHDN 257 (285)
Q Consensus 252 g~~~D~ 257 (285)
|+++|+
T Consensus 143 ~~~~d~ 148 (148)
T smart00577 143 GDPDDT 148 (148)
T ss_pred CCCCCC
Confidence 666664
No 8
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.84 E-value=2.8e-21 Score=184.84 Aligned_cols=153 Identities=36% Similarity=0.488 Sum_probs=126.3
Q ss_pred CCcccccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHH
Q 023259 85 DVVSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQ 164 (285)
Q Consensus 85 ~~~~~~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ 164 (285)
+........+++|++|||+||+|+.... . +.. .|..+ ....+ ....+||.+||||++||..
T Consensus 203 ~~~~~~~~~~k~L~l~lde~l~~S~~~~--~---~~~-------df~~~-----~e~~~--~~~~~~v~kRp~l~~fl~~ 263 (390)
T COG5190 203 PPVSKSTSPKKTLVLDLDETLVHSSFRY--I---TLL-------DFLVK-----VEISL--LQHLVYVSKRPELDYFLGK 263 (390)
T ss_pred chhhcCCCCccccccCCCccceeecccc--c---ccc-------chhhc-----ccccc--ceeEEEEcCChHHHHHHhh
Confidence 3344567789999999999999975321 0 000 12211 11222 2356899999999999999
Q ss_pred hhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCee
Q 023259 165 LSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGI 244 (285)
Q Consensus 165 ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI 244 (285)
+++.|++++||++.+.||++|++.|++.+.|.+++||.+|.... |.|+|||..+++++.++||||++|.+|.++|+|+|
T Consensus 264 ls~~~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~-G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i 342 (390)
T COG5190 264 LSKIHELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCVSYL-GVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAI 342 (390)
T ss_pred hhhhEEEEEEecchhhhcchHHHhccccceeehhhhcccceecc-CchhhhHHhhccCCCceEEeeCChhhhhhCcccee
Confidence 99999999999999999999999999999999999999998774 66999999999999999999999999999999999
Q ss_pred eeCccCCCCCCCCc
Q 023259 245 PCIPFSAGQPHDNQ 258 (285)
Q Consensus 245 ~I~~F~~g~~~D~~ 258 (285)
++++|. +++.|++
T Consensus 343 ~i~~W~-~d~~d~e 355 (390)
T COG5190 343 PIEKWI-SDEHDDE 355 (390)
T ss_pred ccCccc-ccccchh
Confidence 999997 6666655
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.70 E-value=4.8e-17 Score=163.52 Aligned_cols=143 Identities=29% Similarity=0.321 Sum_probs=106.0
Q ss_pred CceEEEEeCCCcccccccCCCCchhhcc---ccc----ccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHh
Q 023259 93 QKLTVVLDLDETLVCAYETSSLPVTLRN---QAT----GAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQL 165 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~~~s~lp~~~~~---~~~----~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~l 165 (285)
.++.||+|||.||+|+...+.+.++... +.. ..++..|.. . |. ..-+||++|||+++||+++
T Consensus 145 ~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~-------~--~~--~~~~~vKlRP~~~efL~~~ 213 (635)
T KOG0323|consen 145 KKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNP-------L--GH--DTEYLVKLRPFVHEFLKEA 213 (635)
T ss_pred hcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecc-------c--CC--CceEEEEeCccHHHHHHHH
Confidence 4479999999999998765555444321 110 011111110 0 11 1348899999999999999
Q ss_pred hhcceEEEEccCchhhHHHHHHHhcCCC-ceeEE-EecCcccccCCccccccccccC-CCCCcEEEEECCcccccCCCCC
Q 023259 166 SEFADLILFTAGLEGYARPLVDRIDGEN-LFSLR-LYRPSTTSTEYREHVKDLSCLS-KDLCRTLIVDNNPFSFLLQPLN 242 (285)
Q Consensus 166 s~~yeIvI~Ta~~~~YA~~Vl~~LDp~~-~f~~~-l~r~~c~~~k~~~~~KdL~~Lg-rdl~~vVIVDDs~~~~~~~p~N 242 (285)
++.|+|+|||+|.+.||..|++.|||.+ +|..| ++|++- ...-.+||..++ +..+++|||||+..+|..++.|
T Consensus 214 sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~----~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~n 289 (635)
T KOG0323|consen 214 NKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDES----PFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRN 289 (635)
T ss_pred HhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCC----CcccccccccCCCCCCccEEEEeCccccccCCCcc
Confidence 9999999999999999999999999987 78655 556651 123456777664 5677899999999999999999
Q ss_pred eeeeCccC
Q 023259 243 GIPCIPFS 250 (285)
Q Consensus 243 gI~I~~F~ 250 (285)
.|.|.+|.
T Consensus 290 LI~i~~y~ 297 (635)
T KOG0323|consen 290 LIQIAPYP 297 (635)
T ss_pred eEEeeeee
Confidence 99999975
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.92 E-value=1.4e-09 Score=94.59 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=78.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccC-chhhHHHHHHHhcCC---------CceeEEEecCcccccCCc-ccccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAG-LEGYARPLVDRIDGE---------NLFSLRLYRPSTTSTEYR-EHVKDLSCL 219 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~-~~~YA~~Vl~~LDp~---------~~f~~~l~r~~c~~~k~~-~~~KdL~~L 219 (285)
+.++||+.++|+.|++. +.++|.|++ ...+++.+++.++.. .+|..++..+.....+.. ...+.+...
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~ 123 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKV 123 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhc
Confidence 77899999999999977 999999988 999999999999877 788888876653221111 122333332
Q ss_pred ---CCCCCcEEEEECCcccccCCCCCeeeeCccCCC
Q 023259 220 ---SKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSAG 252 (285)
Q Consensus 220 ---grdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g 252 (285)
+-+++++++|||++........+|+.+--...|
T Consensus 124 ~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 124 DPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSG 159 (174)
T ss_pred ccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCC
Confidence 578999999999999998888999887666434
No 11
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.85 E-value=8.4e-10 Score=96.53 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=82.3
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|++|++. +.++|.|++...+++.+++.++..++|..+++.+++...|.. .+.+-++.++.+.+++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ 153 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVM 153 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEE
Confidence 66789999999999977 999999999999999999999999999998888776544432 566778888999999999
Q ss_pred EECCcccccCCCCCeeeeC
Q 023259 229 VDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~ 247 (285)
|+|++.-+.....+|+.+-
T Consensus 154 igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 154 VGDAVTDLASARAAGTATV 172 (205)
T ss_pred EcCCHHHHHHHHHcCCeEE
Confidence 9999988877888888754
No 12
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.84 E-value=1.2e-09 Score=100.28 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=86.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|.|++...+++.+++.++...+|..++..+++...|.. .|.+-++++|.+++++|+
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~ 187 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIV 187 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEE
Confidence 56789999999999987 999999999999999999999988899999998887655543 678889999999999999
Q ss_pred EECCcccccCCCCCeeeeCccC
Q 023259 229 VDNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F~ 250 (285)
|+|+...+.....+|+.+--..
T Consensus 188 IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 188 FGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred EcCCHHHHHHHHHcCCEEEEEe
Confidence 9999998888888887665443
No 13
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.83 E-value=1e-09 Score=98.33 Aligned_cols=94 Identities=16% Similarity=0.045 Sum_probs=81.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|-|++...+++..++.++...+|+.++..++....|.. .|.+-++++|.+++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 171 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLF 171 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEE
Confidence 56789999999999987 999999999999999999998888889998887766544443 577888999999999999
Q ss_pred EECCcccccCCCCCeee
Q 023259 229 VDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~ 245 (285)
|+|++........+|+.
T Consensus 172 igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 172 IDDSEPILDAAAQFGIR 188 (224)
T ss_pred EcCCHHHHHHHHHcCCe
Confidence 99999988888888885
No 14
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.82 E-value=2.5e-09 Score=87.96 Aligned_cols=82 Identities=17% Similarity=0.019 Sum_probs=66.4
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccC-chhhHHHHHHHhc-------CCCceeEEEecCcccccCCccccccccccC--C
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAG-LEGYARPLVDRID-------GENLFSLRLYRPSTTSTEYREHVKDLSCLS--K 221 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~-~~~YA~~Vl~~LD-------p~~~f~~~l~r~~c~~~k~~~~~KdL~~Lg--r 221 (285)
...||+.++|+.|++. +.++|.|++ .+.++..+++..+ ..++|......+.. .+...+.+-++++| .
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~--pkp~~~~~a~~~lg~~~ 106 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWL--PKSPRLVEIALKLNGVL 106 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCC--cHHHHHHHHHHHhcCCC
Confidence 4689999999999976 999999999 9999999999887 45666666555432 23346778888889 9
Q ss_pred CCCcEEEEECCcccc
Q 023259 222 DLCRTLIVDNNPFSF 236 (285)
Q Consensus 222 dl~~vVIVDDs~~~~ 236 (285)
+++++++|||++...
T Consensus 107 ~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 107 KPKSILFVDDRPDNN 121 (128)
T ss_pred CcceEEEECCCHhHH
Confidence 999999999998753
No 15
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.82 E-value=1.7e-09 Score=95.13 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=82.5
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCC--ccccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEY--REHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~--~~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|.|++...+++.+++.++...+|..++..+.+...|. ..+.+-++.++.+.+++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ 160 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALM 160 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEE
Confidence 56789999999999976 99999999999999999999999999999998887654443 3567788888999999999
Q ss_pred EECCcccccCCCCCeeeeC
Q 023259 229 VDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~ 247 (285)
|+|++.-+.....+|+.+-
T Consensus 161 iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 161 VGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred ECCCHHHHHHHHHCCCeEE
Confidence 9999988887778887643
No 16
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.78 E-value=3.1e-09 Score=95.14 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=80.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|-|++...++..+++.++..++|..++..+++...|.. .+.+-++++|.+++++++
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~ 173 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVY 173 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 57899999999999987 899999999999999999999888888887777765544433 577888899999999999
Q ss_pred EECCcccccCCCCCeeeeC
Q 023259 229 VDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~ 247 (285)
|+|++.-.......|+.+-
T Consensus 174 IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 174 VGDDERDILAARAAGMPSV 192 (229)
T ss_pred eCCCHHHHHHHHHCCCcEE
Confidence 9999988777777777653
No 17
>PRK11587 putative phosphatase; Provisional
Probab=98.78 E-value=3e-09 Score=94.25 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=78.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|-|++...++..+++.... .++..++..+++...|.. .+.+-++.+|.+++++|+
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ 160 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV 160 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEE
Confidence 56799999999999877 99999999999888888877765 356667777665444433 678888999999999999
Q ss_pred EECCcccccCCCCCeeeeCccC
Q 023259 229 VDNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F~ 250 (285)
|+|++.........|+.+--+.
T Consensus 161 igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 161 VEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred EecchhhhHHHHHCCCEEEEEC
Confidence 9999988887778887654443
No 18
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.75 E-value=1.6e-09 Score=93.17 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=77.6
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccc----cCC--ccccccccccCCCCCc
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS----TEY--REHVKDLSCLSKDLCR 225 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~----~k~--~~~~KdL~~Lgrdl~~ 225 (285)
+...||+.++|++|+ +.++|.|++....+..+++.++..++|+.++..++... .|+ ..|.+-++.+|.++++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 456799999999998 68999999999999999999998889998888776543 133 3677888889999999
Q ss_pred EEEEECCcccccCCCCCeeee
Q 023259 226 TLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 226 vVIVDDs~~~~~~~p~NgI~I 246 (285)
+++|+|++........+|+..
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999998777777777653
No 19
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.73 E-value=5.8e-09 Score=100.76 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=85.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.+||+.|.+. +.++|-|++...+++.+++.++..++|+.++..+++...|.. .|.+-++.+|.+++++|+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIV 294 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 45689999999999987 999999999999999999999999999999999887655443 678889999999999999
Q ss_pred EECCcccccCCCCCeeeeCccC
Q 023259 229 VDNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F~ 250 (285)
|+|+.........+|+.+--..
T Consensus 295 IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 295 FGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred EcCCHHHHHHHHHcCCEEEEEC
Confidence 9999998887777777655543
No 20
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.71 E-value=4.2e-08 Score=80.03 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=68.6
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCc--------hhhHHHHHHHhcCCCceeEEEecCcccccCCcccccccccc-CC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGL--------EGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCL-SK 221 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~--------~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~L-gr 221 (285)
....||+.++|++|++. +.++|.|++. ..+++.+++.++.. +...+++..+...+...+.+-++.+ +.
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~KP~~~~~~~~~~~~~~~ 101 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDVLYACPHCRKPKPGMFLEALKRFNEI 101 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCChHHHHHHHHHcCCC
Confidence 34689999999999977 9999999999 78889999998775 3333333322222223567778888 59
Q ss_pred CCCcEEEEEC-CcccccCCCCCeee
Q 023259 222 DLCRTLIVDN-NPFSFLLQPLNGIP 245 (285)
Q Consensus 222 dl~~vVIVDD-s~~~~~~~p~NgI~ 245 (285)
+.+++++|+| +.........+|+.
T Consensus 102 ~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 102 DPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred ChhheEEEcCCCcccHHHHHHCCCe
Confidence 9999999999 67777666666664
No 21
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.71 E-value=2.2e-09 Score=92.20 Aligned_cols=95 Identities=11% Similarity=0.128 Sum_probs=80.1
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
+..-|++ +.|+.+.+.+.++|-|++...+++.+++.++..++|+.++..+++...|.. .+.+-+++++.+.+++|+|
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~i 165 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVF 165 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 3455764 899999877999999999999999999999998999999998876555543 5778888899999999999
Q ss_pred ECCcccccCCCCCeeeeC
Q 023259 230 DNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I~ 247 (285)
+|++..+.....+|+.+-
T Consensus 166 gDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 166 EDADFGIQAARAAGMDAV 183 (188)
T ss_pred eccHhhHHHHHHCCCEEE
Confidence 999998888888887643
No 22
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.67 E-value=7.2e-09 Score=92.83 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=90.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.+||+.|.+. ..+++-|++.+..++.+++.++...+|..+++.++....|.. .|.+-.++||.+++++|+
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 67899999999999988 999999999999999999999999999999998887666543 799999999999999999
Q ss_pred EECCcccccCCCCCeeeeCccCC
Q 023259 229 VDNNPFSFLLQPLNGIPCIPFSA 251 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F~~ 251 (285)
|||++.-.......|+.+--+.+
T Consensus 165 iEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 165 VEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EecchhHHHHHHHCCCEEEEecC
Confidence 99999998888888888877764
No 23
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.64 E-value=1.7e-08 Score=89.41 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=83.3
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
....||+.++|+.|++. +.++|.|++....++.+++.++..++|..++.++.....|.. .+..-++.+|.+++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 45789999999999977 999999999999999999999999999998888775444432 677888889999999999
Q ss_pred EECCcccccCCCCCeeeeCcc
Q 023259 229 VDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F 249 (285)
|+|+..-.......|+.+--.
T Consensus 171 igDs~~Di~aA~~aG~~~i~v 191 (222)
T PRK10826 171 LEDSFNGMIAAKAARMRSIVV 191 (222)
T ss_pred EcCChhhHHHHHHcCCEEEEe
Confidence 999999888777788765444
No 24
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.62 E-value=3e-08 Score=91.41 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=78.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+..+||+.++|+.|++. +.++|.|++...+++.+++.++..++|..+++.+.+...|.. .+.+-++++|.+++++|+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 45789999999999876 999999999999999999999888888887777665433332 456777788999999999
Q ss_pred EECCcccccCCCCCeee
Q 023259 229 VDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~ 245 (285)
|+|+..-......+|+.
T Consensus 180 IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred ECCCHHHHHHHHHCCCe
Confidence 99999888777778874
No 25
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.62 E-value=9.4e-09 Score=90.61 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=79.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC--CceeEEEecCcccccCC--ccccccccccCCC-CCc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE--NLFSLRLYRPSTTSTEY--REHVKDLSCLSKD-LCR 225 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~--~~f~~~l~r~~c~~~k~--~~~~KdL~~Lgrd-l~~ 225 (285)
..+.||+.++|++|++. +.++|-|++...+++.+++.++.. .+|..++..++....|. ..+.+-+++++.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 46899999999999876 999999999999999999999887 78988888766433333 3567778888876 799
Q ss_pred EEEEECCcccccCCCCCeeee
Q 023259 226 TLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 226 vVIVDDs~~~~~~~p~NgI~I 246 (285)
+++|+|++.-.......|+.+
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999998887777777765
No 26
>PLN02940 riboflavin kinase
Probab=98.60 E-value=7.1e-09 Score=100.22 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=81.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHH-HhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVD-RIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTL 227 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~-~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vV 227 (285)
+...||+.++|++|++. +.++|-|++...+++.+++ ..+..++|+.++..+++...|.. .+.+-++.+|.+++++|
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l 171 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCL 171 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEE
Confidence 45789999999999988 9999999999999999887 67777899999999887655543 67788888999999999
Q ss_pred EEECCcccccCCCCCeeeeC
Q 023259 228 IVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 228 IVDDs~~~~~~~p~NgI~I~ 247 (285)
+|+|+..........|+.+-
T Consensus 172 ~VGDs~~Di~aA~~aGi~~I 191 (382)
T PLN02940 172 VIEDSLPGVMAGKAAGMEVI 191 (382)
T ss_pred EEeCCHHHHHHHHHcCCEEE
Confidence 99999998877777776543
No 27
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.60 E-value=2.6e-07 Score=86.38 Aligned_cols=126 Identities=18% Similarity=0.119 Sum_probs=93.1
Q ss_pred cCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeC-ccHHHHHHHhhhc-
Q 023259 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFER-PGLREFLKQLSEF- 168 (285)
Q Consensus 91 ~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~R-Pgl~eFL~~ls~~- 168 (285)
...++.+||||||||+...+ -|..| ||+.++|++|++.
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~----------------------------------------~v~irdp~V~EtL~eLkekG 164 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE----------------------------------------PVRIRDPFVYDSLDELKERG 164 (303)
T ss_pred eeeccEEEEecCCCccCCCC----------------------------------------ccccCChhHHHHHHHHHHCC
Confidence 34678999999999997411 04468 9999999999988
Q ss_pred ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCC---------------cccccccc---ccC----------
Q 023259 169 ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEY---------------REHVKDLS---CLS---------- 220 (285)
Q Consensus 169 yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~---------------~~~~KdL~---~Lg---------- 220 (285)
+.++|+|++.+++++.+++.++..++|..++..++...... ..+..|.. .|.
T Consensus 165 ikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL 244 (303)
T PHA03398 165 CVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYL 244 (303)
T ss_pred CEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHH
Confidence 99999999999999999999999988887777666543220 12334444 222
Q ss_pred ----C-CCCcEEEEECCcccccCCCCCeeeeCccCCCCCCCCc
Q 023259 221 ----K-DLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQ 258 (285)
Q Consensus 221 ----r-dl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~ 258 (285)
. =.+.+.+|||-+.+= ..-+|-+.|+..- ...+|.+
T Consensus 245 ~~~gvn~~KtiTLVDDl~~Nn-~~YD~fv~v~rcp-~P~~DW~ 285 (303)
T PHA03398 245 RKKGVNYFKTITLVDDLKSNN-YSYDYFVNVKRCP-EPVNDWD 285 (303)
T ss_pred HHcCcceeccEEEeccCcccC-ccceeEEEeeeCC-CCcHHHH
Confidence 1 246688999988653 4668889998884 4456655
No 28
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=78.42 Aligned_cols=122 Identities=21% Similarity=0.160 Sum_probs=89.8
Q ss_pred EEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-ceEEEE
Q 023259 96 TVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF-ADLILF 174 (285)
Q Consensus 96 tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~-yeIvI~ 174 (285)
.+|||+|+||++....|++.+.++--+ ...+... .+.-|.++|++.+||+.++.- |-+..+
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs-------------~n~i~Ds-----~G~ev~L~~~v~~~l~warnsG~i~~~~ 63 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVS-------------SNTIEDS-----KGREVHLFPDVKETLKWARNSGYILGLA 63 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecC-------------ccceecC-----CCeEEEEcHHHHHHHHHHHhCCcEEEEe
Confidence 589999999998777777665543111 1111111 123489999999999999988 999999
Q ss_pred ccCchhhHHHHHHHhcCCCceeEEEecCcccccCCcccccccccc------CCCCCcEEEEECCccccc
Q 023259 175 TAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCL------SKDLCRTLIVDNNPFSFL 237 (285)
Q Consensus 175 Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~L------grdl~~vVIVDDs~~~~~ 237 (285)
|.+.+.-|-++++.+|...+|.+.+...+-. |.....+-|..+ ...++++|.+||+...+.
T Consensus 64 sWN~~~kA~~aLral~~~~yFhy~ViePhP~--K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~ 130 (164)
T COG4996 64 SWNFEDKAIKALRALDLLQYFHYIVIEPHPY--KFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFG 130 (164)
T ss_pred ecCchHHHHHHHHHhchhhhEEEEEecCCCh--hHHHHHHHHHHHHHhhccccCcceEEEEecccccHH
Confidence 9999999999999999999999888876621 222333334433 347899999999987764
No 29
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.59 E-value=1.8e-08 Score=93.24 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=77.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVD 230 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVD 230 (285)
+...||+.++|++|++. +.++|.|++...+++.+++.++..++|..++..+... .+...+.+-+++++.+.+++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~-~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL-SKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC-CCHHHHHHHHHHhCcChhHEEEEC
Confidence 45679999999999977 9999999999999999999999988998877655432 222345566677788899999999
Q ss_pred CCcccccCCCCCeeeeC
Q 023259 231 NNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 231 Ds~~~~~~~p~NgI~I~ 247 (285)
|++.-......+|+.+-
T Consensus 220 Ds~~Di~aA~~AG~~~I 236 (273)
T PRK13225 220 DETRDVEAARQVGLIAV 236 (273)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 99988777777777643
No 30
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.59 E-value=3.6e-08 Score=77.94 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=65.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCccccc----------------CC--ccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTST----------------EY--REH 212 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~----------------k~--~~~ 212 (285)
+..+|++.++|++|.+. +.++|.|++...+++.+++.++....+..++..+..... +. ..+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 55799999999999998 999999999999999999998776556655554433211 11 123
Q ss_pred cccccccCCCCCcEEEEECCcccccCCC
Q 023259 213 VKDLSCLSKDLCRTLIVDNNPFSFLLQP 240 (285)
Q Consensus 213 ~KdL~~Lgrdl~~vVIVDDs~~~~~~~p 240 (285)
.+-++.++.+.+.+++|+|+........
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~~~ 130 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEMAK 130 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHHHH
Confidence 3444555667899999999997654433
No 31
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.58 E-value=1.4e-07 Score=81.23 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=66.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCch----hhH-----------HHHHHHhcCCCceeEEEecC-----------cc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLE----GYA-----------RPLVDRIDGENLFSLRLYRP-----------ST 204 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~----~YA-----------~~Vl~~LDp~~~f~~~l~r~-----------~c 204 (285)
+.+-||+.++|++|++. |.++|.|++.. .++ ..++..+... |...+++. .|
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCCcccccccCCC
Confidence 45679999999999987 99999999985 233 3334333322 45555432 23
Q ss_pred cccCC--ccccccccccCCCCCcEEEEECCcccccCCCCCeeee
Q 023259 205 TSTEY--REHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 205 ~~~k~--~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I 246 (285)
...|. ..+.+-+++++.+++++++|+|+..-......+|+.+
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 22332 3677788889999999999999998887777788753
No 32
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.55 E-value=8.4e-08 Score=80.31 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=64.3
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCch---------------hhHHHHHHHhcCCCceeEEEec-----CcccccC--
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLE---------------GYARPLVDRIDGENLFSLRLYR-----PSTTSTE-- 208 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~---------------~YA~~Vl~~LDp~~~f~~~l~r-----~~c~~~k-- 208 (285)
+...||+.++|+.|++. |.++|.|++.. .++..+++.++.. +...++. +.....|
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~KP~ 103 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA--VDGVLFCPHHPADNCSCRKPK 103 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc--eeEEEECCCCCCCCCCCCCCC
Confidence 35789999999999977 99999999874 4566667776654 1122222 2211122
Q ss_pred CccccccccccCCCCCcEEEEECCcccccCCCCCeee
Q 023259 209 YREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 209 ~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~ 245 (285)
...+.+-++.++.+++++++|+|+..-.......|+.
T Consensus 104 ~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 104 PGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 2356677778899999999999998877666666664
No 33
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.53 E-value=4.6e-08 Score=86.06 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=76.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCC--ccccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEY--REHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~--~~~~KdL~~Lgrdl~~vVI 228 (285)
...+||+.++|+.+++. +.++|.|++...+++.+++.++...+|...+..+.+...+. ..+.+-++.++.+.+++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 56899999999999976 99999999999999999999998888887776665443332 2466777888999999999
Q ss_pred EECCcccccCCCCCeee
Q 023259 229 VDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~ 245 (285)
|+|+..........|+.
T Consensus 172 igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 172 VGDSRNDIQAARAAGCP 188 (226)
T ss_pred ECCCHHHHHHHHHCCCc
Confidence 99999877766666653
No 34
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.53 E-value=1e-08 Score=90.49 Aligned_cols=96 Identities=8% Similarity=0.083 Sum_probs=78.8
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCcee-EEEecCcccccCC--ccccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFS-LRLYRPSTTSTEY--REHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~-~~l~r~~c~~~k~--~~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|. +.++|.|++...+++.++++.+...+|. .+++.++....|. ..|.+-++++|.+++++|+
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~ 164 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCIL 164 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 567899999999994 8999999999999999999999988885 5666655544443 2677888889999999999
Q ss_pred EECCcccccCCCCCeeeeCcc
Q 023259 229 VDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F 249 (285)
|+|++.........|+.+--+
T Consensus 165 igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 165 VDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EeCcHhhHHHHHHCCCEEEEE
Confidence 999999888777788766433
No 35
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.49 E-value=3.9e-07 Score=85.09 Aligned_cols=125 Identities=17% Similarity=0.116 Sum_probs=92.5
Q ss_pred CCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeC-ccHHHHHHHhhhc-c
Q 023259 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFER-PGLREFLKQLSEF-A 169 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~R-Pgl~eFL~~ls~~-y 169 (285)
..++.+||||||||+...+ -|..| ||+.+.|++|.+. +
T Consensus 124 ~~~kvIvFDLDgTLi~~~~----------------------------------------~v~irdPgV~EaL~~LkekGi 163 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE----------------------------------------PVRIRDPRIYDSLTELKKRGC 163 (301)
T ss_pred ccceEEEEecCCCCcCCCC----------------------------------------ccccCCHHHHHHHHHHHHCCC
Confidence 3567999999999996311 04468 9999999999998 9
Q ss_pred eEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc---------------ccccccc---cc------------
Q 023259 170 DLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR---------------EHVKDLS---CL------------ 219 (285)
Q Consensus 170 eIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~---------------~~~KdL~---~L------------ 219 (285)
.++|+|++.+.++..+++.++..++|..++..++....+.. .+..|.. .|
T Consensus 164 kLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~ 243 (301)
T TIGR01684 164 ILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLY 243 (301)
T ss_pred EEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHH
Confidence 99999999999999999999999999888877665433211 1233442 22
Q ss_pred --CC-CCCcEEEEECCcccccCCCCCeeeeCccCCCCCCCCc
Q 023259 220 --SK-DLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQ 258 (285)
Q Consensus 220 --gr-dl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~ 258 (285)
|. =.+.+.+|||-+.+= ..-+|-+.|+..- ...+|.+
T Consensus 244 ~~gvn~~KtitLVDDl~~Nn-~~YD~fv~v~rcp-~P~~DW~ 283 (301)
T TIGR01684 244 DLGVNYFKSITLVDDLADNN-FNYDYFVNVSRCP-VPVNDWD 283 (301)
T ss_pred HcCCceeeeEEEeccCcccC-ccceeEEEeeeCC-CCchHHH
Confidence 22 246678999988653 4668889998884 5556665
No 36
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.45 E-value=5.2e-07 Score=77.81 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=65.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCch---------------hhHHHHHHHhcCCCceeEEEecCc-----ccccCC-
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLE---------------GYARPLVDRIDGENLFSLRLYRPS-----TTSTEY- 209 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~---------------~YA~~Vl~~LDp~~~f~~~l~r~~-----c~~~k~- 209 (285)
+...||+.++|++|++. +.++|.|++.. .+...+++.++. .|..+++... +...|.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCC
Confidence 45789999999999987 99999999873 233334444433 3666665432 222332
Q ss_pred -ccccccccccCCCCCcEEEEECCcccccCCCCCeee
Q 023259 210 -REHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 210 -~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~ 245 (285)
..+.+-++.+|.+++++++|+|++.-.......|+.
T Consensus 106 p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 106 PGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 256788888999999999999999877766666654
No 37
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.44 E-value=4.2e-07 Score=77.88 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=75.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccC---------------chhhHHHHHHHhcCCCceeEEEec-----CcccccCCc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAG---------------LEGYARPLVDRIDGENLFSLRLYR-----PSTTSTEYR 210 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~---------------~~~YA~~Vl~~LDp~~~f~~~l~r-----~~c~~~k~~ 210 (285)
+..-||+.++|++|.+. |.++|.|+. ...++..+++.++.. |..++++ +++...|..
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCC
Confidence 56789999999999987 999999996 356888888888886 7666654 454444432
Q ss_pred --cccccccccCCCCCcEEEEECCcccccCCCCCeeeeCccCC
Q 023259 211 --EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSA 251 (285)
Q Consensus 211 --~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~ 251 (285)
.+..-++.++.+.+++++|.|+..-......+|+.+--+..
T Consensus 106 ~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred HHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 45566667788999999999998877777888887766653
No 38
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.44 E-value=3.2e-07 Score=86.46 Aligned_cols=81 Identities=22% Similarity=0.126 Sum_probs=65.5
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHH----hcCCCceeEEEecCcccccCCccccccccccCCCCCcEEE
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDR----IDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~----LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVI 228 (285)
..||+.++|+.|++. +.++|.|++.+..|..+++. +....+|...... ...+.....+-++.+|.+++.+|+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~---~~pk~~~i~~~~~~l~i~~~~~vf 108 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN---WGPKSESLRKIAKKLNLGTDSFLF 108 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe---cCchHHHHHHHHHHhCCCcCcEEE
Confidence 478999999999988 99999999999999999998 7776777665332 123334666777889999999999
Q ss_pred EECCccccc
Q 023259 229 VDNNPFSFL 237 (285)
Q Consensus 229 VDDs~~~~~ 237 (285)
|||++....
T Consensus 109 idD~~~d~~ 117 (320)
T TIGR01686 109 IDDNPAERA 117 (320)
T ss_pred ECCCHHHHH
Confidence 999998654
No 39
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.42 E-value=3.7e-08 Score=85.59 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=73.9
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCC----ceeEEEecCcccccCCccccccccccCCCCCcEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGEN----LFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTL 227 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~----~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vV 227 (285)
+...||+.++|+.|++.+.+++-|++.......+++.+...+ +|+.++..+.+. .+...+.+-++++| ++.+|
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~-~kp~~~~~a~~~~~--~~~~v 149 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDE-SKEKLFIKAKEKYG--DRVVC 149 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCc-ccHHHHHHHHHHhC--CCcEE
Confidence 568999999999999888887778776666555666665443 556677766653 23446667777888 68899
Q ss_pred EEECCcccccCCCCC--eeeeCccCCC
Q 023259 228 IVDNNPFSFLLQPLN--GIPCIPFSAG 252 (285)
Q Consensus 228 IVDDs~~~~~~~p~N--gI~I~~F~~g 252 (285)
+|||+.........+ ||.+--+..|
T Consensus 150 ~vgDs~~di~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 150 FVDDLAHNLDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred EeCCCHHHHHHHHHHHcCCcEEEecch
Confidence 999999999888888 9977766544
No 40
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.40 E-value=8.3e-08 Score=79.85 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
....||+.++|+.|.+. +.++|.|++.+..+..+++.+ ...+|..++..+++. .|.. .+.+-+++++.+. ++++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 44569999999999876 999999999999999999996 556788777777665 4433 5677788888888 9999
Q ss_pred EECCcccc
Q 023259 229 VDNNPFSF 236 (285)
Q Consensus 229 VDDs~~~~ 236 (285)
|.|++.-.
T Consensus 140 iGDs~~Di 147 (154)
T TIGR01549 140 VGDNLNDI 147 (154)
T ss_pred EeCCHHHH
Confidence 99997544
No 41
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.38 E-value=4e-07 Score=80.16 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=72.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecC-----------cccc-cCCccccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRP-----------STTS-TEYREHVKDLSC 218 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~-----------~c~~-~k~~~~~KdL~~ 218 (285)
+..+||+.+||+.|.+. +.++|.|++...+++.+++.++...+|...+..+ .+.. .+...+.+-++.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 163 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRK 163 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHH
Confidence 56899999999999987 9999999999999999999998777665433211 1111 122244555667
Q ss_pred cCCCCCcEEEEECCcccccCCCCCeeeeCcc
Q 023259 219 LSKDLCRTLIVDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 219 Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F 249 (285)
++.+.+++++|+|+..-.......|+.+ .|
T Consensus 164 ~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~ 193 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLSMIKAAGLGI-AF 193 (219)
T ss_pred cCCCHHHEEEEECCHHHHHHHHhCCCeE-Ee
Confidence 7888999999999998877666667766 35
No 42
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.34 E-value=1.3e-06 Score=75.73 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=52.7
Q ss_pred EEeeCccHHHHHHHhhhc-ceEEEEcc-CchhhHHHHHHHhcCC----------CceeEE-EecCcccccCCccccccc-
Q 023259 151 TVFERPGLREFLKQLSEF-ADLILFTA-GLEGYARPLVDRIDGE----------NLFSLR-LYRPSTTSTEYREHVKDL- 216 (285)
Q Consensus 151 ~V~~RPgl~eFL~~ls~~-yeIvI~Ta-~~~~YA~~Vl~~LDp~----------~~f~~~-l~r~~c~~~k~~~~~KdL- 216 (285)
-+.+-|++.+.|+.|++. .+|++.|. ..++.|+++|+.++.. .+|.+. +|..+ | ..+.+.|
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gs----K-~~Hf~~i~ 117 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGS----K-TTHFRRIH 117 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-----H-HHHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCc----h-HHHHHHHH
Confidence 388999999999999987 99999995 5789999999999888 667654 33321 2 2334444
Q ss_pred cccCCCCCcEEEEECCcccc
Q 023259 217 SCLSKDLCRTLIVDNNPFSF 236 (285)
Q Consensus 217 ~~Lgrdl~~vVIVDDs~~~~ 236 (285)
+..|.+.++++++||...+.
T Consensus 118 ~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHH---GGGEEEEES-HHHH
T ss_pred HhcCCChhHEEEecCchhcc
Confidence 45789999999999988764
No 43
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.32 E-value=8.4e-07 Score=76.48 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=69.3
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc------------cccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR------------EHVKDLSC 218 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~------------~~~KdL~~ 218 (285)
+..+||+.++|+.|.+. +.++|.|++...+++.+++.++...+|...+..++....+.. .+.+-++.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 56899999999999977 999999999999999999999877777655543321111111 11122345
Q ss_pred cCCCCCcEEEEECCcccccCCCCCeeee
Q 023259 219 LSKDLCRTLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 219 Lgrdl~~vVIVDDs~~~~~~~p~NgI~I 246 (285)
++.+.+++++|.|+..-.......|+.+
T Consensus 159 ~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 159 LNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred hCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 6778899999999997766655566654
No 44
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.29 E-value=9.8e-07 Score=81.62 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=95.9
Q ss_pred ccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-
Q 023259 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF- 168 (285)
Q Consensus 90 ~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~- 168 (285)
...+++.+++|+||||......+. |+.. ...-....||+.++|+.|.+.
T Consensus 154 ~~~~~~~~~~D~dgtl~~~~~~~~----------------~~~~--------------~~~~~~~~~~~~~~l~~l~~~g 203 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKMGGRSP----------------YDWT--------------KVKEDKPNPMVVELVKMYKAAG 203 (300)
T ss_pred CCCCCCEEEEECCCcCcCCCCCCc----------------cchh--------------hcccCCCChhHHHHHHHHHhCC
Confidence 344678999999999997532111 0000 000134699999999999987
Q ss_pred ceEEEEccCchhhHHHHHHHhcCCC-ceeEEEecCc-------ccccCCc--cccccccccCC-CCCcEEEEECCccccc
Q 023259 169 ADLILFTAGLEGYARPLVDRIDGEN-LFSLRLYRPS-------TTSTEYR--EHVKDLSCLSK-DLCRTLIVDNNPFSFL 237 (285)
Q Consensus 169 yeIvI~Ta~~~~YA~~Vl~~LDp~~-~f~~~l~r~~-------c~~~k~~--~~~KdL~~Lgr-dl~~vVIVDDs~~~~~ 237 (285)
+.++|.|+.....++.+++.++..+ +|..++..+. +...+.. ...+.|..++. +.+.++.|||++....
T Consensus 204 ~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~ 283 (300)
T PHA02530 204 YEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVD 283 (300)
T ss_pred CEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHH
Confidence 9999999999999999999999987 7877766652 2222222 34566676777 6799999999999999
Q ss_pred CCCCCeeeeCccC
Q 023259 238 LQPLNGIPCIPFS 250 (285)
Q Consensus 238 ~~p~NgI~I~~F~ 250 (285)
....+||++--..
T Consensus 284 ~a~~~Gi~~i~v~ 296 (300)
T PHA02530 284 MWRRIGLECWQVA 296 (300)
T ss_pred HHHHhCCeEEEec
Confidence 8899998765443
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.27 E-value=7.6e-07 Score=96.21 Aligned_cols=97 Identities=9% Similarity=0.096 Sum_probs=83.4
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC-CceeEEEecCcccccCC--ccccccccccCCCCCcEEEE
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE-NLFSLRLYRPSTTSTEY--REHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~-~~f~~~l~r~~c~~~k~--~~~~KdL~~Lgrdl~~vVIV 229 (285)
..||+.++|++|++. +.++|.|++...+++.+++.++.. .+|..++..+++...|. ..|.+-++.++.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 579999999999987 999999999999999999999875 67999998888765544 36788889999999999999
Q ss_pred ECCcccccCCCCCeeeeCccC
Q 023259 230 DNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I~~F~ 250 (285)
+|++..+......|+.+--..
T Consensus 242 gDs~~Di~AA~~aGm~~I~v~ 262 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAVT 262 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEEC
Confidence 999998888888887665554
No 46
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.26 E-value=3.3e-06 Score=72.58 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=62.4
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchh------------hHHHHHHHhcCCCceeEEEecCcccccCC--ccccccccc
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEG------------YARPLVDRIDGENLFSLRLYRPSTTSTEY--REHVKDLSC 218 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~------------YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~--~~~~KdL~~ 218 (285)
.-||+.+.|+.|.+. |.++|.|++... +++.+++.++... ...+..+.....|. +.+..-++.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~ 120 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQ 120 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHH
Confidence 459999999999876 999999998763 5677888887642 33444433222232 245555667
Q ss_pred cC--CCCCcEEEEECCcc--------cccCCCCCeee
Q 023259 219 LS--KDLCRTLIVDNNPF--------SFLLQPLNGIP 245 (285)
Q Consensus 219 Lg--rdl~~vVIVDDs~~--------~~~~~p~NgI~ 245 (285)
+| .+++++++|.|++. -......+|+.
T Consensus 121 ~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~ 157 (166)
T TIGR01664 121 YNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLE 157 (166)
T ss_pred cCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCC
Confidence 77 78999999999972 44455566664
No 47
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.22 E-value=9.5e-07 Score=78.72 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=80.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
...-||+.+.|..+++. |.++|.|+.....++.+++.++...+|..++..+.+...|.. ....-++.+|.+.+++|.
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~ 167 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALM 167 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEE
Confidence 35789999999999988 999999999999999999999999999988885555544433 456777888888779999
Q ss_pred EECCcccccCCCCCeeee
Q 023259 229 VDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I 246 (285)
|=|+..-......+|+..
T Consensus 168 VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 168 VGDSLNDILAAKAAGVPA 185 (220)
T ss_pred ECCCHHHHHHHHHcCCCE
Confidence 999999988888777553
No 48
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.20 E-value=9.6e-07 Score=73.16 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=80.8
Q ss_pred EEeeCccHHHHHHHhh-hcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEE
Q 023259 151 TVFERPGLREFLKQLS-EFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTL 227 (285)
Q Consensus 151 ~V~~RPgl~eFL~~ls-~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vV 227 (285)
.....||+.++|+.++ +.+.++|.|++....++.+++.++...+|..+++.+++...|.. .|.+-++.++.+++++|
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 4789999999999999 44999999999999999999999988899999988877665553 57788888899999999
Q ss_pred EEECCcccccCCCCCeee
Q 023259 228 IVDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 228 IVDDs~~~~~~~p~NgI~ 245 (285)
+|||++.........|+.
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999776655555553
No 49
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.15 E-value=1.8e-06 Score=73.02 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=76.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|.|++.... ..++.+++..++|..+++.+++...|.. .|.+-++.++.+++++|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 46789999999999986 9999999999998 7777778888889998887776555543 567778888999999999
Q ss_pred EECCcccccCCCCCeee
Q 023259 229 VDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~ 245 (285)
|||++.........|+.
T Consensus 163 vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 163 VDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EcCCHHHHHHHHHcCCE
Confidence 99999877666666664
No 50
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.14 E-value=2.1e-06 Score=78.18 Aligned_cols=89 Identities=8% Similarity=0.079 Sum_probs=63.6
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccC----chhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEE
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAG----LEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTL 227 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~----~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vV 227 (285)
...|++.+||+++.+. +.++|-|+. ...+++.+++.++..++|..++..+.....+.. |. ..+. ..+-+|
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~---~~-~~l~-~~~i~i 188 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYT---KT-QWIQ-DKNIRI 188 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCC---HH-HHHH-hCCCeE
Confidence 3455599999999988 999999998 667999999999988888777766654322221 11 1121 233379
Q ss_pred EEECCcccccCCCCCeeee
Q 023259 228 IVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 228 IVDDs~~~~~~~p~NgI~I 246 (285)
.|-|+..-+.....+|+.+
T Consensus 189 ~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 189 HYGDSDNDITAAKEAGARG 207 (237)
T ss_pred EEeCCHHHHHHHHHCCCCE
Confidence 9999998887776777653
No 51
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.12 E-value=2e-06 Score=78.06 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=85.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|++|++. +.++|-|++...+++.++++++..++|+.++..+++...|.. .+.+-+++++.+++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~ 186 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFV 186 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEE
Confidence 56789999999999877 999999999999999999999999999999998887655543 678889999999999999
Q ss_pred EECCcccccCCCCCeeeeCcc
Q 023259 229 VDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F 249 (285)
|+|++.-......+|+.+--.
T Consensus 187 vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 187 FEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EcCCHHHHHHHHHCCCEEEEE
Confidence 999999888888888865544
No 52
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.12 E-value=2.1e-06 Score=75.43 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=80.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|++|++. +.++|.|++...++...++.++...+|..++..++....|+. .|.+-++++|.+.+++|+
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 172 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM 172 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence 57899999999999988 999999999999999999999998999999888876655543 677888999999999999
Q ss_pred EECCc-ccccCCCCCeeee
Q 023259 229 VDNNP-FSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~-~~~~~~p~NgI~I 246 (285)
|+|++ .-+......|+.+
T Consensus 173 igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 173 VGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred ECCChHHHHHHHHHCCCEE
Confidence 99998 4555555566543
No 53
>PRK06769 hypothetical protein; Validated
Probab=98.12 E-value=3e-06 Score=73.06 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=62.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhh-----HHHHHHHhcCCCceeEEEe-----cCcccccCC--ccccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGY-----ARPLVDRIDGENLFSLRLY-----RPSTTSTEY--REHVKDLSC 218 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~Y-----A~~Vl~~LDp~~~f~~~l~-----r~~c~~~k~--~~~~KdL~~ 218 (285)
+..-||+.++|++|++. |.++|.|++.... .......+...+ |...+. .+.+...|. ..+.+-+++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG-FDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC-cCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 44689999999999987 9999999986421 112333333333 222222 222222232 367788888
Q ss_pred cCCCCCcEEEEECCcccccCCCCCeeeeC
Q 023259 219 LSKDLCRTLIVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 219 Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~ 247 (285)
++.+++++++|+|++.-.......|+.+-
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCeEE
Confidence 99999999999999987776666666544
No 54
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.11 E-value=7.7e-06 Score=69.61 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=66.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCccccc--------------CC--ccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTST--------------EY--REHVK 214 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~--------------k~--~~~~K 214 (285)
+..+||+.++|+.|++. +.++|.|++...+++.+++.++...+|..++..+..... .. ....|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 67899999999999877 999999999999999999999887788777754332110 00 01112
Q ss_pred --cccccCCC-CCcEEEEECCcccccCCCCCe
Q 023259 215 --DLSCLSKD-LCRTLIVDNNPFSFLLQPLNG 243 (285)
Q Consensus 215 --dL~~Lgrd-l~~vVIVDDs~~~~~~~p~Ng 243 (285)
-++.+... .+++|+|+|+...+.....+.
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d 182 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSD 182 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCC
Confidence 23333334 788999999998876554443
No 55
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.05 E-value=3e-06 Score=73.56 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=80.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|++|++. |.++|.|++...+++.+++.++...+|+.++..++....|.. .|.+-++.+|.+++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~ 170 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLF 170 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 55789999999999997 999999999999999999999988889999988876554443 577888889999999999
Q ss_pred EECCcccccCCCCCeeee
Q 023259 229 VDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I 246 (285)
|+|++........+|+..
T Consensus 171 vgD~~~Di~~A~~~G~~~ 188 (198)
T TIGR01428 171 VASNPWDLGGAKKFGFKT 188 (198)
T ss_pred EeCCHHHHHHHHHCCCcE
Confidence 999997776666667653
No 56
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.03 E-value=3.8e-06 Score=73.29 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=82.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|.|++...+++.++++++..++|..++..+.....|.. .+.+-++++|.+++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ 163 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVY 163 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEE
Confidence 57899999999999977 999999999999999999999998889888777665433332 577888899999999999
Q ss_pred EECCcccccCCCCCeeeeCcc
Q 023259 229 VDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I~~F 249 (285)
|+|++.-+......|+.+--.
T Consensus 164 igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 164 VGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred eCCCHHHHHHHHHCCCeEEEE
Confidence 999998887777777765443
No 57
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.01 E-value=1.2e-05 Score=71.28 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=65.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC--Ccee--EEEecCcccccCC-----------c-cccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE--NLFS--LRLYRPSTTSTEY-----------R-EHVK 214 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~--~~f~--~~l~r~~c~~~k~-----------~-~~~K 214 (285)
+..+||+.+||+.|++. +.++|.|++...+++.+++.+ .. ..+. ..+..+.....++ + ...+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 67899999999999987 999999999999999999987 32 2332 2222221111010 0 1134
Q ss_pred cccccCCCCCcEEEEECCcccccCCCCCeeeeC
Q 023259 215 DLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 215 dL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~ 247 (285)
-++.++.+.+++|.|.|+..-.......|+.+.
T Consensus 152 ~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 455667778899999999988776666666443
No 58
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.00 E-value=4.8e-06 Score=72.95 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=81.0
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--ccccccccc-CCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCL-SKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~L-grdl~~vVI 228 (285)
+..+||+.++|+++++.+.++|-|++....++.+++.++...+|+.+++.+++...|.. .+.+-++.+ |.+++++|+
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 57899999999999988999999999999999999999998999999988876655543 577888899 999999999
Q ss_pred EECCc-ccccCCCCCeeee
Q 023259 229 VDNNP-FSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~-~~~~~~p~NgI~I 246 (285)
|+|++ ........+|+..
T Consensus 176 igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred ECCCcHHHHHHHHHCCCcE
Confidence 99998 5666666667543
No 59
>PRK09449 dUMP phosphatase; Provisional
Probab=97.93 E-value=7.4e-06 Score=72.31 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=78.7
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCC-CCCcEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSK-DLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgr-dl~~vVI 228 (285)
+...||+.++|+.|++.+.++|.|++....++..++.++..++|+.++..+++...|+. .|.+-++.+|. +.+++++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 46789999999999977999999999999999999999988899999998887655544 67788888985 4589999
Q ss_pred EECCcc-cccCCCCCeee
Q 023259 229 VDNNPF-SFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~~-~~~~~p~NgI~ 245 (285)
|+|++. .......+|+.
T Consensus 174 vgD~~~~Di~~A~~aG~~ 191 (224)
T PRK09449 174 VGDNLHSDILGGINAGID 191 (224)
T ss_pred EcCCcHHHHHHHHHCCCc
Confidence 999984 66666666654
No 60
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.92 E-value=7.6e-06 Score=71.42 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=87.4
Q ss_pred EEeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh-cCCCceeEEEecCcccccCCc--cccccccccCCCCCcE
Q 023259 151 TVFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI-DGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRT 226 (285)
Q Consensus 151 ~V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L-Dp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~v 226 (285)
+....||+.++|+.+++. +.++|.|++....+..++... +...+|+.+++.+++...|+. .|.+-++.+|.+++++
T Consensus 82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 356799999999999976 999999999988776655442 345678888888887766654 6778889999999999
Q ss_pred EEEECCcccccCCCCCeeeeCccCCCCCCCCccCcHHHHHh
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQKDVRPELYE 267 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~~DVR~vL~~ 267 (285)
++|||++.........|+..--+.++ .+++..|++
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~------~~~~~~l~~ 196 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDK------QTIPDYFAK 196 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCC------ccHHHHHHh
Confidence 99999999888888889987666432 455666654
No 61
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.90 E-value=5.6e-06 Score=70.51 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=77.5
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
+...||+.++|+.|++. +.++|-|++ .+++.+++.++..++|..++..+.+...+.. .+.+-++.++.+.+++|+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56899999999999987 999999988 7799999999888899998887765544433 466777888999999999
Q ss_pred EECCcccccCCCCCeeee
Q 023259 229 VDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I 246 (285)
|+|+.........+|+.+
T Consensus 165 IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 165 FEDALAGVQAARAAGMFA 182 (185)
T ss_pred EeCcHhhHHHHHHCCCeE
Confidence 999998887777777753
No 62
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.90 E-value=7e-06 Score=71.39 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecC-cc---ccc--CCccccccccccCCCCCc
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRP-ST---TST--EYREHVKDLSCLSKDLCR 225 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~-~c---~~~--k~~~~~KdL~~Lgrdl~~ 225 (285)
+...||+.++|+.+++.+.++|-|++...+++.+++.++...+|...+.-+ +. ... .......-++.++...++
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 557899999999999779999999999999999999998877665443221 10 000 001111122234445578
Q ss_pred EEEEECCcccccCCCCCeeee
Q 023259 226 TLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 226 vVIVDDs~~~~~~~p~NgI~I 246 (285)
++.|-|+..-......+|+.|
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCE
Confidence 999999998765554444444
No 63
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.89 E-value=1.6e-05 Score=68.31 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=62.6
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCc-hhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEEC
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGL-EGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDN 231 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~-~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDD 231 (285)
.-||+.++|++|++. +.++|.|++. ...+..+++.++...+ . .+...+...+.+-++.++.+.+++++|+|
T Consensus 44 ~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~-----~--~~~KP~p~~~~~~l~~~~~~~~~~l~IGD 116 (170)
T TIGR01668 44 AYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL-----P--HAVKPPGCAFRRAHPEMGLTSEQVAVVGD 116 (170)
T ss_pred cChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE-----c--CCCCCChHHHHHHHHHcCCCHHHEEEECC
Confidence 468999999999987 9999999998 6777777776654321 1 11122223566777888989999999999
Q ss_pred Ccc-cccCCCCCeeeeC
Q 023259 232 NPF-SFLLQPLNGIPCI 247 (285)
Q Consensus 232 s~~-~~~~~p~NgI~I~ 247 (285)
+.. -......+|+..-
T Consensus 117 s~~~Di~aA~~aGi~~i 133 (170)
T TIGR01668 117 RLFTDVMGGNRNGSYTI 133 (170)
T ss_pred cchHHHHHHHHcCCeEE
Confidence 984 5655556665443
No 64
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.87 E-value=3.2e-05 Score=74.36 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=88.1
Q ss_pred CceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-ceE
Q 023259 93 QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF-ADL 171 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~-yeI 171 (285)
+++.|+||-||||+.... .. |... ..-.+...||+.++|++|.+. |.+
T Consensus 1 ~~k~l~lDrDgtl~~~~~-~~----------------y~~~--------------~~~~~~l~pGV~e~L~~Lk~~G~kL 49 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPP-TD----------------FQVD--------------SLDKLAFEPGVIPALLKLQKAGYKL 49 (354)
T ss_pred CCcEEEEeCCCCccCCCC-cc----------------cccc--------------CcccceECcCHHHHHHHHHhCCCeE
Confidence 478999999999997421 00 1000 011267899999999999977 999
Q ss_pred EEEccC---------------chhhHHHHHHHhcCCCceeEEEec-----CcccccCCc--cccccccccCCCCCcEEEE
Q 023259 172 ILFTAG---------------LEGYARPLVDRIDGENLFSLRLYR-----PSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 172 vI~Ta~---------------~~~YA~~Vl~~LDp~~~f~~~l~r-----~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
+|.|+. ...++..+++.++.. |..++++ +.|...|.. .+..-++.++.+++++++|
T Consensus 50 ~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmI 127 (354)
T PRK05446 50 VMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVI 127 (354)
T ss_pred EEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 999994 234555555555542 5555544 344443332 3334445568899999999
Q ss_pred ECCcccccCCCCCeeeeCccCCCCCCCCccCcHHHHH
Q 023259 230 DNNPFSFLLQPLNGIPCIPFSAGQPHDNQKDVRPELY 266 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I~~F~~g~~~D~~~DVR~vL~ 266 (285)
-|+..-......+|+..--.. .+.-+. +||..+|-
T Consensus 128 GDs~sDi~aAk~aGi~~I~v~-~~~~~~-~~i~~~l~ 162 (354)
T PRK05446 128 GDRETDVQLAENMGIKGIRYA-RETLNW-DAIAEQLT 162 (354)
T ss_pred cCCHHHHHHHHHCCCeEEEEE-CCCCCH-HHHHHHHh
Confidence 999877777777777533221 222222 57777763
No 65
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.87 E-value=1.2e-05 Score=72.58 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=82.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCce-eEEEecCcccccCCc--cccccccccCC-CCCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYR--EHVKDLSCLSK-DLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f-~~~l~r~~c~~~k~~--~~~KdL~~Lgr-dl~~v 226 (285)
+...||+.++|++|++. +.++|-|++...+++.+++.++..++| +.++..++....|.. .+.+-++.+|. +++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 56789999999999987 999999999999999999999988885 777777775544433 67788889997 48999
Q ss_pred EEEECCcccccCCCCCeeeeCccC
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F~ 250 (285)
|+|.|++.-+.....+|+.+--..
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v~ 201 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGLI 201 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEEe
Confidence 999999998888888887655443
No 66
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.82 E-value=8.4e-06 Score=71.41 Aligned_cols=112 Identities=15% Similarity=-0.006 Sum_probs=82.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhh--HHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGY--ARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~Y--A~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~v 226 (285)
+...||+.++|+.|++. +.++|.|++.... +...+..++...+|+.++..+++...|.. .|.+-++++|.+++++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 56789999999999977 9999999987655 33333334555678888876665544433 6778888999999999
Q ss_pred EEEECCcccccCCCCCeeeeCccCCCCCCCCccCcHHHHHhhc
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQKDVRPELYERF 269 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~~DVR~vL~~~f 269 (285)
|+|||++.........|+..--+..+ .+.+..|.+.+
T Consensus 173 l~i~D~~~di~aA~~aG~~~i~v~~~------~~~~~~l~~~~ 209 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGITTIKVSDE------EQAIHDLEKAT 209 (211)
T ss_pred EEEcCCHHHHHHHHHcCCEEEEECCH------HHHHHHHHHHh
Confidence 99999999888888888876555321 44555555443
No 67
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.81 E-value=1.7e-05 Score=72.25 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=59.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccC----chhhHHHHHHHhcC--CCceeEEEecCcccccCCc--cccccccccCCC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAG----LEGYARPLVDRIDG--ENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKD 222 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~----~~~YA~~Vl~~LDp--~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrd 222 (285)
....||+.+||+++.+. ++|++-|+. ...+++.+++.++. ..+|..++..+.. .+.. ...+ .
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~K~~~l~-------~ 183 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYTKTQWLK-------K 183 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCCHHHHHH-------h
Confidence 45667799999999777 999999984 46688888887877 6677666655532 1211 1222 2
Q ss_pred CCcEEEEECCcccccCCCCCeeee
Q 023259 223 LCRTLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 223 l~~vVIVDDs~~~~~~~p~NgI~I 246 (285)
.+-+|+|-|+..-+.....+|+..
T Consensus 184 ~~i~I~IGDs~~Di~aA~~AGi~~ 207 (237)
T PRK11009 184 KNIRIFYGDSDNDITAAREAGARG 207 (237)
T ss_pred cCCeEEEcCCHHHHHHHHHcCCcE
Confidence 334899999988887776676653
No 68
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.76 E-value=0.0002 Score=66.61 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=74.5
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCC---------------ccccccccc
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEY---------------REHVKDLSC 218 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~---------------~~~~KdL~~ 218 (285)
=|.+-+-|.+|++. .-+++||.|.+++|..-+++++..++|..++.+........ ..+..|+..
T Consensus 144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~~ 223 (297)
T PF05152_consen 144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVTN 223 (297)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeCCc
Confidence 47888999999988 58999999999999999999999999999988765322111 022333333
Q ss_pred ---c--------------CC-CCCcEEEEECCcccccCCCCCeeeeCccCCCCCCCCc
Q 023259 219 ---L--------------SK-DLCRTLIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQ 258 (285)
Q Consensus 219 ---L--------------gr-dl~~vVIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~ 258 (285)
| |. =.+.+.+|||-+.+= ..-+|-+.|+..- ...+|.+
T Consensus 224 ~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~Nn-~~YD~FVnvkrcp-~P~~DW~ 279 (297)
T PF05152_consen 224 VNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNN-YSYDYFVNVKRCP-VPVNDWQ 279 (297)
T ss_pred CCCCCCCCeehHHHHHHcCCceeeeEEEeccCcccC-ccceeEEEeccCC-CCchHHH
Confidence 2 22 245678999988664 5778999999884 5456654
No 69
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.73 E-value=8.5e-05 Score=74.87 Aligned_cols=113 Identities=14% Similarity=0.026 Sum_probs=75.8
Q ss_pred CCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-ce
Q 023259 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF-AD 170 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~-ye 170 (285)
...+.+.||+||||+....-..++.. ..++ ..+-||+.+.|+.|.+. |.
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~-----------------------------~~d~-~~l~pgV~e~L~~L~~~Gy~ 215 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKG-----------------------------PDDW-QIIFPEIPEKLKELEADGFK 215 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCC-----------------------------HHHe-eecccCHHHHHHHHHHCCCE
Confidence 46789999999999964210011100 0111 22469999999999988 99
Q ss_pred EEEEccCch------------hhHHHHHHHhcCCCceeEEEecCcccccCCc--ccccccccc----CCCCCcEEEEECC
Q 023259 171 LILFTAGLE------------GYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCL----SKDLCRTLIVDNN 232 (285)
Q Consensus 171 IvI~Ta~~~------------~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~L----grdl~~vVIVDDs 232 (285)
|+|+|+... ..+..+++.++.. |...+..+.|...|.. .+..-++.+ +.+++++++|-|+
T Consensus 216 IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDa 293 (526)
T TIGR01663 216 ICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDA 293 (526)
T ss_pred EEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCc
Confidence 999999766 4678888888764 6655555565554443 333333333 4789999999999
Q ss_pred cccc
Q 023259 233 PFSF 236 (285)
Q Consensus 233 ~~~~ 236 (285)
..-.
T Consensus 294 agr~ 297 (526)
T TIGR01663 294 AGRP 297 (526)
T ss_pred ccch
Confidence 8554
No 70
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.72 E-value=2.4e-05 Score=70.21 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=73.9
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccC--------CccccccccccCCC-
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTE--------YREHVKDLSCLSKD- 222 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k--------~~~~~KdL~~Lgrd- 222 (285)
++.-|-|+++|-.|.+.+ .++||++.+..|..++.+|+...+|..+++++..-..+ ...|.|-....|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~ 177 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDS 177 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCC
Confidence 566677899999998877 89999999999999999999999999988876422111 12456666667776
Q ss_pred CCcEEEEECCcccccCCCCCee
Q 023259 223 LCRTLIVDNNPFSFLLQPLNGI 244 (285)
Q Consensus 223 l~~vVIVDDs~~~~~~~p~NgI 244 (285)
+++++++|||..+......-|.
T Consensus 178 p~~t~FfDDS~~NI~~ak~vGl 199 (244)
T KOG3109|consen 178 PRNTYFFDDSERNIQTAKEVGL 199 (244)
T ss_pred cCceEEEcCchhhHHHHHhccc
Confidence 9999999999999887776665
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.71 E-value=2.7e-05 Score=65.82 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=65.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVD 230 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVD 230 (285)
+..+++. -|++|++. +.++|-|+.....+..+++.++...+|... ..+...+.+-++.++.+.++++.|-
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~vG 99 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ-------SNKLIAFSDILEKLALAPENVAYIG 99 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc-------cchHHHHHHHHHHcCCCHHHEEEEC
Confidence 4567776 79999877 999999999999999999999877666421 1222344555677888999999999
Q ss_pred CCcccccCCCCCeeee
Q 023259 231 NNPFSFLLQPLNGIPC 246 (285)
Q Consensus 231 Ds~~~~~~~p~NgI~I 246 (285)
|+..-.......|+.+
T Consensus 100 Ds~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 100 DDLIDWPVMEKVGLSV 115 (154)
T ss_pred CCHHHHHHHHHCCCeE
Confidence 9998777666666653
No 72
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.69 E-value=5.6e-05 Score=66.40 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=81.7
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
+..-|++.++|+.+++.|+++|.|+|...++...++.++...+|+.+++.++.+..|.. .|..-++.+|.+++++++|
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~V 177 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFV 177 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEE
Confidence 67789999999999988999999999999999999999988899999999988866644 6888999999999999999
Q ss_pred ECCcccc-cCCCCCeee
Q 023259 230 DNNPFSF-LLQPLNGIP 245 (285)
Q Consensus 230 DDs~~~~-~~~p~NgI~ 245 (285)
||+...- .....-|+.
T Consensus 178 gD~~~~di~gA~~~G~~ 194 (229)
T COG1011 178 GDSLENDILGARALGMK 194 (229)
T ss_pred CCChhhhhHHHHhcCcE
Confidence 9999887 444444553
No 73
>PLN02954 phosphoserine phosphatase
Probab=97.68 E-value=4.9e-05 Score=67.07 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=61.7
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC--CceeEEEecCc-------------ccc-cCCccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE--NLFSLRLYRPS-------------TTS-TEYREHVK 214 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~--~~f~~~l~r~~-------------c~~-~k~~~~~K 214 (285)
..++||+.++|+.+++. +.++|-|++...+++.+++.++.. .+|...+..+. |.. .|.....+
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 45789999999999887 899999999999999999998765 45644322111 100 01111112
Q ss_pred cccccCCCCCcEEEEECCcccccCCCCCeee
Q 023259 215 DLSCLSKDLCRTLIVDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 215 dL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~ 245 (285)
-++.++ .+++|+|-|+..-......+|+.
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCC
Confidence 222233 46899999999988775554443
No 74
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.67 E-value=3.5e-05 Score=71.70 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=84.6
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCcee--EEEecCcccccCCc--cccccccccCCCCCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFS--LRLYRPSTTSTEYR--EHVKDLSCLSKDLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~--~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~v 226 (285)
+...||+.++|++|++. +.++|.|++...++..+++.+.-.+++. ..+..+++...|.. .+.+-++.+|.+++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 222 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC 222 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence 46899999999999987 9999999999999999998774333332 12255555444433 6778888899999999
Q ss_pred EEEECCcccccCCCCCeeeeCccCCCCCCCCc--------cCcHHHHHhhcC
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPFSAGQPHDNQ--------KDVRPELYERFH 270 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F~~g~~~D~~--------~DVR~vL~~~f~ 270 (285)
|+|+|++..+.....+|+.+--...|.....+ +|++.+..++++
T Consensus 223 l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~~ 274 (286)
T PLN02779 223 VVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDFD 274 (286)
T ss_pred EEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhhH
Confidence 99999999888777777655443322211111 666666655554
No 75
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.65 E-value=3e-05 Score=66.01 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=75.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
....||+.++|+.|++. +.++|-|++. .+..++++++...+|+.++..++....|.. .|.+-+++++.+.+++|+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~ 163 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIG 163 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 35789999999999977 9999999864 467889999888889988877654433332 577888889999999999
Q ss_pred EECCcccccCCCCCeeee
Q 023259 229 VDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 229 VDDs~~~~~~~p~NgI~I 246 (285)
|+|++..+.....+|+.+
T Consensus 164 vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 164 IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EecCHHHHHHHHHcCCEE
Confidence 999998887777777754
No 76
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.64 E-value=3e-05 Score=69.81 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=73.6
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh---cCCCceeEEEecCcccccCCccccccccccCCCCCcEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI---DGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTL 227 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L---Dp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vV 227 (285)
..+.||+.++|+++++. +.++|+|+++....+.+++.. +...+|+..+....+...+...|.+-++.+|.++++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEE
Confidence 45789999999999977 999999999999999888876 44445655543322222223378888999999999999
Q ss_pred EEECCcccccCCCCCeeee
Q 023259 228 IVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 228 IVDDs~~~~~~~p~NgI~I 246 (285)
+|+|+..........|+.+
T Consensus 174 fVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 174 FLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEeCCHHHHHHHHHcCCEE
Confidence 9999998877777777654
No 77
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.63 E-value=4.9e-05 Score=73.62 Aligned_cols=144 Identities=28% Similarity=0.328 Sum_probs=96.7
Q ss_pred CCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcceE
Q 023259 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFADL 171 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~yeI 171 (285)
.++..+|.|+|.|.+|+.--.+.|.... +..+.....+ .+....+ ....++++.||++..|+...++.|++
T Consensus 24 ~~~~~l~~~~~~~~~h~~~~~~~p~~~~-~~~~~~~~~~------~~~~~~~--~~~~~~~k~~~~l~~~~~~i~~~~e~ 94 (390)
T COG5190 24 DKKLILVVDLDQTIIHTTVDPNDPNNVN-QSLERTLKSV------NDRDPVQ--EKCAYYVKARPKLFPFLTKISPLYEL 94 (390)
T ss_pred CcccccccccccceecccccCCCCCchh-hhhhccccch------hcccccc--ccccceeeecccccchhhhhchhcce
Confidence 4677799999999999754333333221 2222111111 1111111 12457799999999999999999999
Q ss_pred EEEccCchhhHHHHHHHhcCCC-ceeEEE-ecCcccccCCcccccccccc-CCCCCcEEEEECCcccccCC--CCCeeee
Q 023259 172 ILFTAGLEGYARPLVDRIDGEN-LFSLRL-YRPSTTSTEYREHVKDLSCL-SKDLCRTLIVDNNPFSFLLQ--PLNGIPC 246 (285)
Q Consensus 172 vI~Ta~~~~YA~~Vl~~LDp~~-~f~~~l-~r~~c~~~k~~~~~KdL~~L-grdl~~vVIVDDs~~~~~~~--p~NgI~I 246 (285)
.++|+|+..|++.+.+++||.| .|..+. .++.- ...-.|-++.+ ..+...++++||.+..|.-+ -.|.+..
T Consensus 95 ~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~----~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~ 170 (390)
T COG5190 95 HIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDES----GSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAK 170 (390)
T ss_pred eeEeeccccchhhhhhccccccccccccccccccc----ccchhhhhhhcCccccccccccccccccCCccchhhhhhcc
Confidence 9999999999999999999976 565443 34331 23456777776 57889999999999998221 2345555
Q ss_pred Cc
Q 023259 247 IP 248 (285)
Q Consensus 247 ~~ 248 (285)
.+
T Consensus 171 ~~ 172 (390)
T COG5190 171 SP 172 (390)
T ss_pred cc
Confidence 55
No 78
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.62 E-value=4.5e-05 Score=66.25 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=74.2
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEE
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
..-||+.++|++|++. +.++|.|++... +..+++.++..++|..++..+++...|.. .+.+-++.+|.+++++|+|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 5689999999999987 999999998875 47888888888889988887776655543 5778888899999999999
Q ss_pred ECCc-ccccCCCCCeee
Q 023259 230 DNNP-FSFLLQPLNGIP 245 (285)
Q Consensus 230 DDs~-~~~~~~p~NgI~ 245 (285)
+|+. .-.......|+.
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 455555555654
No 79
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.57 E-value=8.2e-05 Score=67.97 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=80.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCce-eEEEecCcccccCCc--cccccccccCCC-CCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLF-SLRLYRPSTTSTEYR--EHVKDLSCLSKD-LCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f-~~~l~r~~c~~~k~~--~~~KdL~~Lgrd-l~~v 226 (285)
+..-||+.++|+.|++. +.++|-|++....++.+++.+...++| ..++..+++...|.. .+.+-++.+|.+ .+++
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 46789999999999977 999999999999999999998877764 777777776544433 677888889975 6999
Q ss_pred EEEECCcccccCCCCCeeeeCcc
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F 249 (285)
|+|+|++.-+.....+|+.+--.
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~v 202 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVGV 202 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEEE
Confidence 99999998888778888755443
No 80
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.51 E-value=7.6e-05 Score=66.21 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=62.1
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCc--ccc-----cCC--ccccccccccCCC
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS--TTS-----TEY--REHVKDLSCLSKD 222 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~--c~~-----~k~--~~~~KdL~~Lgrd 222 (285)
+..+||+.+||+.+++.+.++|-|++...+++++++.++...+|..++--++ ... .+. ...++.+...+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~-- 144 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY-- 144 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC--
Confidence 5689999999999998889999999999999999999998877765433322 100 010 12233333333
Q ss_pred CCcEEEEECCcccccCCCCCee
Q 023259 223 LCRTLIVDNNPFSFLLQPLNGI 244 (285)
Q Consensus 223 l~~vVIVDDs~~~~~~~p~NgI 244 (285)
.+++.|-|+..-.......|+
T Consensus 145 -~~~v~vGDs~nDl~ml~~Ag~ 165 (203)
T TIGR02137 145 -YRVIAAGDSYNDTTMLSEAHA 165 (203)
T ss_pred -CCEEEEeCCHHHHHHHHhCCC
Confidence 379999999886554433343
No 81
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.48 E-value=0.0001 Score=70.02 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=68.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEe-------cC---cccccCC-c-cccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLY-------RP---STTSTEY-R-EHVKDLSC 218 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~-------r~---~c~~~k~-~-~~~KdL~~ 218 (285)
+.++||+.++|+.|++. +.++|.|++...+++.+.++++....+...+- .. .+...+. . .+.+-++.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 66899999999999988 99999999999999999999887654432221 10 1111111 1 22333456
Q ss_pred cCCCCCcEEEEECCcccccCCCCCeeeeC
Q 023259 219 LSKDLCRTLIVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 219 Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~ 247 (285)
+|.+++++|.|-|+..-.......|+.|-
T Consensus 260 lgi~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 260 YEIPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred cCCChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 78899999999999988776666666554
No 82
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.43 E-value=0.00028 Score=61.32 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=69.2
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEEE
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIVD 230 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIVD 230 (285)
..|+..++|+.|++. +.++|.|++...+++.+++.++...+|..+++.++... |.. .+.+-++.+|.+.+++|+|+
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vG 185 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVG 185 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEe
Confidence 345669999999987 99999999999999999999999899998888877543 432 56778888999999999999
Q ss_pred CCcccc
Q 023259 231 NNPFSF 236 (285)
Q Consensus 231 Ds~~~~ 236 (285)
|++.-.
T Consensus 186 D~~~Di 191 (197)
T TIGR01548 186 DTVDDI 191 (197)
T ss_pred CCHHHH
Confidence 998544
No 83
>PLN02811 hydrolase
Probab=97.40 E-value=0.0001 Score=65.30 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=74.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHH-HHHHhcCCCceeEEEecC--cccccCC--ccccccccccC---CC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARP-LVDRIDGENLFSLRLYRP--STTSTEY--REHVKDLSCLS---KD 222 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~-Vl~~LDp~~~f~~~l~r~--~c~~~k~--~~~~KdL~~Lg---rd 222 (285)
+...||+.++|+.|++. +.++|-|++...+... ..+......+|..+++.+ ++...|. ..|.+-++.++ .+
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 45689999999999987 9999999998875543 333334456788888888 6554443 36777777775 88
Q ss_pred CCcEEEEECCcccccCCCCCeeeeCcc
Q 023259 223 LCRTLIVDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 223 l~~vVIVDDs~~~~~~~p~NgI~I~~F 249 (285)
.+++|+|+|+..-+.....+|+.+--.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 999999999999888777777765544
No 84
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.32 E-value=6e-05 Score=68.08 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=76.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhc-CCCceeEEEe--cCcccccCC--ccccccccccCCCC-C
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRID-GENLFSLRLY--RPSTTSTEY--REHVKDLSCLSKDL-C 224 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LD-p~~~f~~~l~--r~~c~~~k~--~~~~KdL~~Lgrdl-~ 224 (285)
+..-||+.+++..|..+ -.+.++|++.+..++..++++. .-..|..... -+.+...|. ..|.+-.+.+|-+. +
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~ 170 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPS 170 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCcc
Confidence 77889999999999988 9999999999999999888886 5566777666 334433322 37899999999888 9
Q ss_pred cEEEEECCcccccCCCCCeeeeC
Q 023259 225 RTLIVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 225 ~vVIVDDs~~~~~~~p~NgI~I~ 247 (285)
++++++|++.........|.+|.
T Consensus 171 k~lVfeds~~Gv~aa~aagm~vi 193 (222)
T KOG2914|consen 171 KCLVFEDSPVGVQAAKAAGMQVV 193 (222)
T ss_pred ceEEECCCHHHHHHHHhcCCeEE
Confidence 99999999998766555544433
No 85
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.31 E-value=0.00049 Score=62.06 Aligned_cols=77 Identities=5% Similarity=0.006 Sum_probs=54.0
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHH--HHHHHhcCCC-ceeEEEecCcccccCCccccccccccCCCCCcEEEE
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYAR--PLVDRIDGEN-LFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~--~Vl~~LDp~~-~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIV 229 (285)
.-||+.++|++|++. +.++|.|++.+..++ ..++.++... .|..++....... .....-++.++.+.+++++|
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~---~~l~~~~~~~~~~~~~~~~v 101 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAV---QMILESKKRFDIRNGIIYLL 101 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHH---HHHHhhhhhccCCCceEEEe
Confidence 369999999999987 999999999888776 7788888776 7888777664321 11112223345555667777
Q ss_pred ECCc
Q 023259 230 DNNP 233 (285)
Q Consensus 230 DDs~ 233 (285)
-|..
T Consensus 102 Gd~~ 105 (242)
T TIGR01459 102 GHLE 105 (242)
T ss_pred CCcc
Confidence 6655
No 86
>PRK08238 hypothetical protein; Validated
Probab=97.30 E-value=0.0007 Score=67.65 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=60.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc-cccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR-EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~-~~~KdL~~Lgrdl~~vVIV 229 (285)
...+||+.++|+++++. +.++|-|++.+.+++++++.++. |+.++..+.....+.. .-.+-.+.++ .++++.+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~~~~kg~~K~~~l~~~l~--~~~~~yv 145 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGTTNLKGAAKAAALVEAFG--ERGFDYA 145 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCccccCCchHHHHHHHHhC--ccCeeEe
Confidence 45789999999999977 99999999999999999999865 7777776653322211 1111112233 3457778
Q ss_pred ECCcccccC--CCCCeeeeC
Q 023259 230 DNNPFSFLL--QPLNGIPCI 247 (285)
Q Consensus 230 DDs~~~~~~--~p~NgI~I~ 247 (285)
-|+..-... .-+|.+.|.
T Consensus 146 GDS~~Dlp~~~~A~~av~Vn 165 (479)
T PRK08238 146 GNSAADLPVWAAARRAIVVG 165 (479)
T ss_pred cCCHHHHHHHHhCCCeEEEC
Confidence 887754432 334555544
No 87
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.25 E-value=0.00023 Score=70.30 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=76.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccc-cCCccccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS-TEYREHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~-~k~~~~~KdL~~Lgrdl~~vVIV 229 (285)
+...||+.++|++|++. +.++|.|++...+++.+++.++..++|..++..++... .++..+.+-++.++ ++++|+|
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~--~~~~v~V 406 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYD--IKEAAVV 406 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcC--cceEEEE
Confidence 56789999999999877 99999999999999999999999899999888876531 23345555666554 5889999
Q ss_pred ECCcccccCCCCCeeee
Q 023259 230 DNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I 246 (285)
.|++.-+.....+|+.+
T Consensus 407 GDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 407 GDRLSDINAAKDNGLIA 423 (459)
T ss_pred eCCHHHHHHHHHCCCeE
Confidence 99998888777787654
No 88
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.12 E-value=0.00022 Score=62.01 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCC
Q 023259 161 FLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQ 239 (285)
Q Consensus 161 FL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~ 239 (285)
=++.+.+. ++++|-|+.....+..+++.+....+|. +...+...+.+-++.+|.+.++++.|-|+..-....
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~-------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a 128 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ-------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVM 128 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec-------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHH
Confidence 34445544 9999999999999999999998766554 111222345566777899999999999999877766
Q ss_pred CCCeeee
Q 023259 240 PLNGIPC 246 (285)
Q Consensus 240 p~NgI~I 246 (285)
...|+.+
T Consensus 129 ~~aG~~~ 135 (183)
T PRK09484 129 EKVGLSV 135 (183)
T ss_pred HHCCCeE
Confidence 6666654
No 89
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.09 E-value=0.0028 Score=54.15 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=43.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCc-------hh-------hHHHHHHHhcCCCceeEEEec---CcccccCCcccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGL-------EG-------YARPLVDRIDGENLFSLRLYR---PSTTSTEYREHV 213 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~-------~~-------YA~~Vl~~LDp~~~f~~~l~r---~~c~~~k~~~~~ 213 (285)
...-|++.+-|+++.+. |.|+|+|+-. .. ..+.+++.++.. ..++.. +.|-....|.+.
T Consensus 28 ~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip---~~~~~a~~~d~~RKP~~GM~~ 104 (159)
T PF08645_consen 28 KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP---IQVYAAPHKDPCRKPNPGMWE 104 (159)
T ss_dssp EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS----EEEEECGCSSTTSTTSSHHHH
T ss_pred hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc---eEEEecCCCCCCCCCchhHHH
Confidence 44678999999999987 9999999762 12 223333333222 222222 223222223333
Q ss_pred ccccccC----CCCCcEEEEECCccc
Q 023259 214 KDLSCLS----KDLCRTLIVDNNPFS 235 (285)
Q Consensus 214 KdL~~Lg----rdl~~vVIVDDs~~~ 235 (285)
.-++.++ .|+++.++|=|+...
T Consensus 105 ~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 105 FALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHhccccccccccceEEEeccCCC
Confidence 3333333 488888999887654
No 90
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.06 E-value=0.00015 Score=61.40 Aligned_cols=79 Identities=8% Similarity=0.012 Sum_probs=67.5
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
+...||+.++|+. ++|.|++...+++.++++++...+|+.+++.+++...|.. .|.+-++++|.+++++++|
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 5689999999993 7899999999999999999988889988888876555543 6788899999999999999
Q ss_pred ECCcccc
Q 023259 230 DNNPFSF 236 (285)
Q Consensus 230 DDs~~~~ 236 (285)
+|+....
T Consensus 163 gD~~~Di 169 (175)
T TIGR01493 163 AAHQWDL 169 (175)
T ss_pred ecChhhH
Confidence 9997543
No 91
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.87 E-value=0.003 Score=58.61 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=49.2
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhc---CCCc-eeEEEecCcccccCCccccccccccCCCCCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRID---GENL-FSLRLYRPSTTSTEYREHVKDLSCLSKDLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LD---p~~~-f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~v 226 (285)
...-||+.+||+++.+. ..+++.|+....+.+...+.|. .... +.+++.++.- ..|.. -.+ .+-..-.-+
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-~~K~~-rr~---~I~~~y~Iv 191 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-SSKES-RRQ---KVQKDYEIV 191 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-CCcHH-HHH---HHHhcCCEE
Confidence 44679999999999887 8999999998777665555544 3332 3567777532 22211 111 111111227
Q ss_pred EEEECCcccc
Q 023259 227 LIVDNNPFSF 236 (285)
Q Consensus 227 VIVDDs~~~~ 236 (285)
+.|.|+..-+
T Consensus 192 l~vGD~~~Df 201 (266)
T TIGR01533 192 LLFGDNLLDF 201 (266)
T ss_pred EEECCCHHHh
Confidence 7788877655
No 92
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0031 Score=56.42 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=69.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCC--c---------ccc-ccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEY--R---------EHV-KDLSC 218 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~--~---------~~~-KdL~~ 218 (285)
..++||+.+.++.+++. +.++|.|+|...+++++.++++....+..++-.++-..+.. + .-. .-++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 67899999999999999 99999999999999999999998877776666554111110 0 111 22234
Q ss_pred cCCCCCcEEEEECCcccccCC--CCCeeee
Q 023259 219 LSKDLCRTLIVDNNPFSFLLQ--PLNGIPC 246 (285)
Q Consensus 219 Lgrdl~~vVIVDDs~~~~~~~--p~NgI~I 246 (285)
+|.++++++-+=|+..-.... -++++.+
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 588899999999988765443 3444443
No 93
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=96.75 E-value=0.0008 Score=60.56 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=70.0
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVIV 229 (285)
+..-||+.++|+.|++.|.++|.|++... ++..+..++|+.++..+.....|.. .|.+-++.+|.+++++|+|
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 44569999999999988999999998765 3666777789988887765444433 5777788899999999999
Q ss_pred ECCc-ccccCCCCCeeee
Q 023259 230 DNNP-FSFLLQPLNGIPC 246 (285)
Q Consensus 230 DDs~-~~~~~~p~NgI~I 246 (285)
.|++ .-......+|+..
T Consensus 187 GD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred cCCcHHHHHHHHHCCCeE
Confidence 9995 6666666677654
No 94
>PTZ00445 p36-lilke protein; Provisional
Probab=96.71 E-value=0.0011 Score=59.44 Aligned_cols=135 Identities=9% Similarity=0.051 Sum_probs=82.9
Q ss_pred ccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-
Q 023259 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF- 168 (285)
Q Consensus 90 ~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~- 168 (285)
+..+-+.+++|||.|||. +++.- +.+. ..++ ..+.-..+|.+.++++.|.+.
T Consensus 39 ~~~GIk~Va~D~DnTlI~-~HsgG---~~~~-------------------~~~~----~~~~~~~tpefk~~~~~l~~~~ 91 (219)
T PTZ00445 39 NECGIKVIASDFDLTMIT-KHSGG---YIDP-------------------DNDD----IRVLTSVTPDFKILGKRLKNSN 91 (219)
T ss_pred HHcCCeEEEecchhhhhh-hhccc---ccCC-------------------Ccch----hhhhccCCHHHHHHHHHHHHCC
Confidence 345789999999999995 22211 0000 0000 112244799999999999977
Q ss_pred ceEEEEccCchhh---------------HHHHHHHhcCCCceeEEE------ecCc-----ccccCC--cc--c--cccc
Q 023259 169 ADLILFTAGLEGY---------------ARPLVDRIDGENLFSLRL------YRPS-----TTSTEY--RE--H--VKDL 216 (285)
Q Consensus 169 yeIvI~Ta~~~~Y---------------A~~Vl~~LDp~~~f~~~l------~r~~-----c~~~k~--~~--~--~KdL 216 (285)
+.|+|-|-+.+.. ++..++.=.-+-.+..++ +.+. +...++ .. | .+-+
T Consensus 92 I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll 171 (219)
T PTZ00445 92 IKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVC 171 (219)
T ss_pred CeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHH
Confidence 9999999887744 334443221111122111 1111 011111 12 4 5566
Q ss_pred cccCCCCCcEEEEECCcccccCCCCCeeeeCccCC
Q 023259 217 SCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPFSA 251 (285)
Q Consensus 217 ~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F~~ 251 (285)
+..|.+++++++|||++.++.....-|+..--|.+
T Consensus 172 ~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 172 SDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred HHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 77799999999999999999888888888777753
No 95
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.66 E-value=0.0016 Score=64.60 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=78.9
Q ss_pred CCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-ce
Q 023259 92 LQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF-AD 170 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~-ye 170 (285)
+.|+.||||||+||+--.- . +.|..-..+. -..+|.. =--+.+|...+.+. .=
T Consensus 220 ~~kK~LVLDLDNTLWGGVI----G--------edGv~GI~Ls-----~~~~G~~---------fk~fQ~~Ik~l~kqGVl 273 (574)
T COG3882 220 KSKKALVLDLDNTLWGGVI----G--------EDGVDGIRLS-----NSAEGEA---------FKTFQNFIKGLKKQGVL 273 (574)
T ss_pred cccceEEEecCCccccccc----c--------cccccceeec-----CCCCchh---------HHHHHHHHHHHHhccEE
Confidence 4699999999999996321 0 1222111110 1112221 01256777777777 77
Q ss_pred EEEEccCchhhHHHHHHHhcCCCcee-EEEecCccccc-CCccccccccccCCCCCcEEEEECCcccccCCCCCe-eeeC
Q 023259 171 LILFTAGLEGYARPLVDRIDGENLFS-LRLYRPSTTST-EYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNG-IPCI 247 (285)
Q Consensus 171 IvI~Ta~~~~YA~~Vl~~LDp~~~f~-~~l~r~~c~~~-k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~Ng-I~I~ 247 (285)
++|-|-....-|..+.++. |+=.+. .-+.+-+|-.. |-....|..++||-..+..|++||+|.....-..++ +.|.
T Consensus 274 Lav~SKN~~~da~evF~kh-p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi 352 (574)
T COG3882 274 LAVCSKNTEKDAKEVFRKH-PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVI 352 (574)
T ss_pred EEEecCCchhhHHHHHhhC-CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeec
Confidence 8899999999888887643 211111 01122223222 212456777889999999999999998876544444 6777
Q ss_pred ccC
Q 023259 248 PFS 250 (285)
Q Consensus 248 ~F~ 250 (285)
+|-
T Consensus 353 ~~~ 355 (574)
T COG3882 353 EFP 355 (574)
T ss_pred cCC
Confidence 773
No 96
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.55 E-value=0.0063 Score=48.03 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.8
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
=||+.+||+.|.+. ..+++.|+++..-...+.++|..-
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~ 54 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL 54 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc
Confidence 59999999999988 999999999876666666666433
No 97
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.44 E-value=0.0069 Score=52.42 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=81.9
Q ss_pred ccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-
Q 023259 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF- 168 (285)
Q Consensus 90 ~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~- 168 (285)
...+.+.+|+|||+|||-=. . -..-|-+.+-+..+++.
T Consensus 24 ~~~Gikgvi~DlDNTLv~wd--~---------------------------------------~~~tpe~~~W~~e~k~~g 62 (175)
T COG2179 24 KAHGIKGVILDLDNTLVPWD--N---------------------------------------PDATPELRAWLAELKEAG 62 (175)
T ss_pred HHcCCcEEEEeccCceeccc--C---------------------------------------CCCCHHHHHHHHHHHhcC
Confidence 34578999999999999511 0 01357888999999988
Q ss_pred ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccc-cCCCCCe---e
Q 023259 169 ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSF-LLQPLNG---I 244 (285)
Q Consensus 169 yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~-~~~p~Ng---I 244 (285)
..++|.|++.+.-+..++..+|...+ ++-.-.+ ...+.|.|..++-+.++|+.|=|...-= .....+| |
T Consensus 63 i~v~vvSNn~e~RV~~~~~~l~v~fi-----~~A~KP~--~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tI 135 (175)
T COG2179 63 IKVVVVSNNKESRVARAAEKLGVPFI-----YRAKKPF--GRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTI 135 (175)
T ss_pred CEEEEEeCCCHHHHHhhhhhcCCcee-----ecccCcc--HHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEE
Confidence 99999999999999999999987632 1111111 1367788999999999999999988642 2233344 5
Q ss_pred eeCccC
Q 023259 245 PCIPFS 250 (285)
Q Consensus 245 ~I~~F~ 250 (285)
.|.|-.
T Consensus 136 lV~Pl~ 141 (175)
T COG2179 136 LVEPLV 141 (175)
T ss_pred EEEEec
Confidence 666654
No 98
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0061 Score=53.47 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=65.3
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCc----hh--------hHHHHHHHhcCCC-ceeEEEecCc-----ccccCC--c
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGL----EG--------YARPLVDRIDGEN-LFSLRLYRPS-----TTSTEY--R 210 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~----~~--------YA~~Vl~~LDp~~-~f~~~l~r~~-----c~~~k~--~ 210 (285)
..+.||+.+=|..+.+. |.++|+|+-+ .. +-+.++..+...+ .|+.+++|.+ |...|+ +
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~g 109 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPG 109 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChH
Confidence 34689999999999888 9999999832 22 2233444554444 5889998776 333333 3
Q ss_pred cccccccccCCCCCcEEEEECCcccccCCCCC---eeeeCccC
Q 023259 211 EHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLN---GIPCIPFS 250 (285)
Q Consensus 211 ~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~N---gI~I~~F~ 250 (285)
.+..-++..+.|+++.++|=|+..-..+.... ++.+..+.
T Consensus 110 m~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~ 152 (181)
T COG0241 110 MLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGI 152 (181)
T ss_pred HHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCc
Confidence 45566666778999999999997554433322 44444444
No 99
>PRK11590 hypothetical protein; Provisional
Probab=96.36 E-value=0.0017 Score=57.41 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=34.4
Q ss_pred EeeCccHHHHH-HHhhh-cceEEEEccCchhhHHHHHHHhc
Q 023259 152 VFERPGLREFL-KQLSE-FADLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 152 V~~RPgl~eFL-~~ls~-~yeIvI~Ta~~~~YA~~Vl~~LD 190 (285)
+..+||+.+.| +.+++ -+.++|-|++...+++++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 57875 49999999999999999999877
No 100
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.36 E-value=0.014 Score=48.28 Aligned_cols=49 Identities=6% Similarity=0.061 Sum_probs=36.1
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHH------------HHHHHhcCCCc-eeEEEecC
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYAR------------PLVDRIDGENL-FSLRLYRP 202 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~------------~Vl~~LDp~~~-f~~~l~r~ 202 (285)
..+.+.+.|+.+.+. +++++.|+-...... .+.+.|+..+. +..++.+.
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 578889999999765 999999998887766 66666766653 45555544
No 101
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.16 E-value=0.013 Score=53.78 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=33.9
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL 194 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~ 194 (285)
.|...+.|+.|.+. ..++|-|......+..+++.++...+
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~ 63 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDP 63 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCC
Confidence 46678899999988 99999999999999999999876543
No 102
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.15 E-value=0.0038 Score=53.99 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=55.8
Q ss_pred hcceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCCCeeee
Q 023259 167 EFADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 167 ~~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I 246 (285)
+.+.++|.|+....+++.+++.+....+|... ..+...+.+-++.++.+.++++.|-|+..-.......|+.+
T Consensus 49 ~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~-------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~ 121 (169)
T TIGR02726 49 CGIDVAIITSKKSGAVRHRAEELKIKRFHEGI-------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAV 121 (169)
T ss_pred CCCEEEEEECCCcHHHHHHHHHCCCcEEEecC-------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 34999999999999999999999888776532 12223556667778888999999999987765544455444
Q ss_pred Cc
Q 023259 247 IP 248 (285)
Q Consensus 247 ~~ 248 (285)
-.
T Consensus 122 am 123 (169)
T TIGR02726 122 AV 123 (169)
T ss_pred EC
Confidence 33
No 103
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.10 E-value=0.024 Score=49.19 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=62.1
Q ss_pred ccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcc
Q 023259 90 ERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFA 169 (285)
Q Consensus 90 ~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~y 169 (285)
...+-+.||||+|+||+.-+.. ..-|.+.+.+++|++.|
T Consensus 37 k~~Gik~li~DkDNTL~~~~~~-----------------------------------------~i~~~~~~~~~~l~~~~ 75 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYED-----------------------------------------EIPPEYAEWLNELKKQF 75 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCcC-----------------------------------------cCCHHHHHHHHHHHHHC
Confidence 4568899999999999953210 13577888899999875
Q ss_pred ---eEEEEccCc-------hhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccC-----CCCCcEEEEECCcc
Q 023259 170 ---DLILFTAGL-------EGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLS-----KDLCRTLIVDNNPF 234 (285)
Q Consensus 170 ---eIvI~Ta~~-------~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lg-----rdl~~vVIVDDs~~ 234 (285)
.|+|.|++. ..-|+.+-+.++.. .+.+.-- |.+.+.+-++.++ ..++++++|-|...
T Consensus 76 ~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp-vl~h~~k-------KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~ 147 (168)
T PF09419_consen 76 GKDRVLIVSNSAGSSDDPDGERAEALEKALGIP-VLRHRAK-------KPGCFREILKYFKCQKVVTSPSEIAVIGDRLF 147 (168)
T ss_pred CCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-EEEeCCC-------CCccHHHHHHHHhhccCCCCchhEEEEcchHH
Confidence 399999983 56677777777632 2222211 2222222233332 35899999999875
No 104
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.07 E-value=0.014 Score=54.55 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=59.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC----CceeEEEec-C-cccccCCc----cccc------
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE----NLFSLRLYR-P-STTSTEYR----EHVK------ 214 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~----~~f~~~l~r-~-~c~~~k~~----~~~K------ 214 (285)
+.+|||+.+||+.|.+. ..++|+|+|...+++.+++.++.. ..++.++-- + .+.....+ .+.|
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 77899999999999988 999999999999999999987653 233444332 2 22111111 1222
Q ss_pred -cccccC--CCCCcEEEEECCccccc
Q 023259 215 -DLSCLS--KDLCRTLIVDNNPFSFL 237 (285)
Q Consensus 215 -dL~~Lg--rdl~~vVIVDDs~~~~~ 237 (285)
..+.++ .+.+++|+|.|+..-..
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ 225 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLR 225 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhh
Confidence 222345 67899999999987654
No 105
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=95.88 E-value=0.02 Score=51.82 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=48.9
Q ss_pred CceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc-ceE
Q 023259 93 QKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF-ADL 171 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~-yeI 171 (285)
..+.+++||||||+.+.+. ..|...+.|+++.+. ..+
T Consensus 2 ~~kli~~DlDGTLl~~~~~------------------------------------------i~~~~~~al~~~~~~g~~v 39 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT------------------------------------------ISPETKEALARLREKGVKV 39 (264)
T ss_pred CeeEEEEcCCCCccCCCCc------------------------------------------cCHHHHHHHHHHHHCCCEE
Confidence 3688999999999985211 367778889988766 999
Q ss_pred EEEccCchhhHHHHHHHhcCCC
Q 023259 172 ILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 172 vI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
+|-|......+.++++.|....
T Consensus 40 ~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 40 VLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred EEECCCChHHHHHHHHHcCCCc
Confidence 9999999999999999998876
No 106
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.69 E-value=0.03 Score=49.24 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=31.8
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
-|...+-|+++.+. +.+++-|......++.+.+.++...
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 45667778888877 8899999998888899888887764
No 107
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.64 E-value=0.019 Score=50.70 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=61.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCce-eE--EEecCcccccCCc--c----------cccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLF-SL--RLYRPSTTSTEYR--E----------HVKD 215 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f-~~--~l~r~~c~~~k~~--~----------~~Kd 215 (285)
+..|||+.+||+.+.+. +.++|.|++...+++.+++.+.....+ .. .+..+.....+.. . -.+-
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 68999999999999987 999999999999999999998543333 21 2221111111000 0 1233
Q ss_pred ccccCCCCCcEEEEECCcccccCCCCCee
Q 023259 216 LSCLSKDLCRTLIVDNNPFSFLLQPLNGI 244 (285)
Q Consensus 216 L~~Lgrdl~~vVIVDDs~~~~~~~p~NgI 244 (285)
++.++...+++|.|-|+..-+......++
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 34445567889999999887654444443
No 108
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=95.55 E-value=0.016 Score=52.77 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=45.5
Q ss_pred EeeCccHHHHHHHhhh---cceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcc
Q 023259 152 VFERPGLREFLKQLSE---FADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPST 204 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~---~yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c 204 (285)
+..-||..+|++.+++ .++++|-|.+..-|.+.+++.-+....|+.+++-..+
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~ 125 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPAC 125 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCce
Confidence 6789999999999954 4999999999999999999999988877776655444
No 109
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.052 Score=47.94 Aligned_cols=42 Identities=26% Similarity=0.621 Sum_probs=38.9
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
+..|||..+|.+.+.++ -.++|-|+|+..|..++++.|.-+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 77899999999999999 9999999999999999999997544
No 110
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.44 E-value=0.042 Score=48.39 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=27.1
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
.|...+-|+++.+. ..++|-|.-....+..+++.+....
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 34455667777766 6777777777777777777776554
No 111
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=95.43 E-value=0.053 Score=49.10 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=29.6
Q ss_pred ccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 156 PGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 156 Pgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
|...+-|+++.+. ..++|-|.-....+..+++.++..
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 3455778888887 889999988888888888888754
No 112
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.40 E-value=0.036 Score=48.31 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=30.2
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
-|...+.|+.+.+. ..+++.|.-....+..+++.+...
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred CHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 35567788888866 889999998888888888877654
No 113
>PLN02645 phosphoglycolate phosphatase
Probab=95.21 E-value=0.037 Score=52.04 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.1
Q ss_pred ccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhc
Q 023259 156 PGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 156 Pgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LD 190 (285)
||+.++|+.|.+. ..+++.|+....-...+++++.
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~ 82 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFE 82 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 8999999999977 9999999988777666666554
No 114
>PRK10444 UMP phosphatase; Provisional
Probab=95.16 E-value=0.042 Score=50.20 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=30.5
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDG 191 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp 191 (285)
=||..++|+.|.+. ..+++.|++...-...++++|..
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~ 56 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT 56 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 58899999999977 88999999988777777777643
No 115
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.09 E-value=0.063 Score=48.44 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=13.1
Q ss_pred ceEEEEeCCCccccc
Q 023259 94 KLTVVLDLDETLVCA 108 (285)
Q Consensus 94 k~tLVLDLD~TLV~s 108 (285)
.+.+++||||||++.
T Consensus 3 ~kli~~DlDGTLl~~ 17 (272)
T PRK10530 3 YRVIALDLDGTLLTP 17 (272)
T ss_pred ccEEEEeCCCceECC
Confidence 478999999999974
No 116
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.08 E-value=0.056 Score=49.22 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.9
Q ss_pred ceEEEEeCCCccccc
Q 023259 94 KLTVVLDLDETLVCA 108 (285)
Q Consensus 94 k~tLVLDLD~TLV~s 108 (285)
.+++++||||||+.+
T Consensus 2 ~kli~~DlDGTLl~~ 16 (272)
T PRK15126 2 ARLAAFDMDGTLLMP 16 (272)
T ss_pred ccEEEEeCCCcCcCC
Confidence 468899999999974
No 117
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=94.98 E-value=0.056 Score=48.71 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.2
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
-|...+.|+++.+. ..++|-|......+..+++.++..
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 34456677777766 778888888777777777777654
No 118
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=94.97 E-value=0.065 Score=47.13 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 158 LREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 158 l~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
..+.|+.+.+. ..+++.|......+..+++.++..
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 57888888877 899999999999999999998754
No 119
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=94.96 E-value=0.039 Score=46.35 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=57.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCc------------ccccCC-cccccc-c
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPS------------TTSTEY-REHVKD-L 216 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~------------c~~~k~-~~~~Kd-L 216 (285)
+..+||+.++|+.+.+. +.++|.|++...+++.+++.++...++...+..+. |..... ...++. +
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 55799999999999887 99999999999999999999987766655543321 100000 011122 2
Q ss_pred cccCCCCCcEEEEECCccc
Q 023259 217 SCLSKDLCRTLIVDNNPFS 235 (285)
Q Consensus 217 ~~Lgrdl~~vVIVDDs~~~ 235 (285)
+..+.+.++++.|-|+..-
T Consensus 152 ~~~~~~~~~~~~iGDs~~D 170 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVND 170 (177)
T ss_pred HHhCCCHHHEEEEeCCHHH
Confidence 2335567788999887654
No 120
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.94 E-value=0.061 Score=48.24 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=30.9
Q ss_pred ccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 156 PGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 156 Pgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
|...++|+++.+. ..+++.|.-+..-+..+++.++..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 4578899999987 899999988888888888888754
No 121
>PRK10976 putative hydrolase; Provisional
Probab=94.87 E-value=0.07 Score=48.28 Aligned_cols=15 Identities=40% Similarity=0.423 Sum_probs=13.0
Q ss_pred ceEEEEeCCCccccc
Q 023259 94 KLTVVLDLDETLVCA 108 (285)
Q Consensus 94 k~tLVLDLD~TLV~s 108 (285)
.+.+++||||||+++
T Consensus 2 ikli~~DlDGTLl~~ 16 (266)
T PRK10976 2 YQVVASDLDGTLLSP 16 (266)
T ss_pred ceEEEEeCCCCCcCC
Confidence 368999999999975
No 122
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.86 E-value=0.067 Score=48.92 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 158 LREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 158 l~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
..+-|+++.+. ..++|.|.-....+..+++.++..
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 44667778777 888888888888888888888754
No 123
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.76 E-value=0.055 Score=49.49 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=26.1
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
=||..++|+.|.+. ..+++.|+....-...+.+++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 57999999999988 999999987665444444443
No 124
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.097 Score=44.40 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=55.1
Q ss_pred EeeCccHHHHHHHhhhcceEEEEccCchhh--HHHHHHHhcCC-Cce--eEEEecCcccccCCccccccccccCCCCCcE
Q 023259 152 VFERPGLREFLKQLSEFADLILFTAGLEGY--ARPLVDRIDGE-NLF--SLRLYRPSTTSTEYREHVKDLSCLSKDLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~yeIvI~Ta~~~~Y--A~~Vl~~LDp~-~~f--~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~v 226 (285)
...-||+++-+++|-++|+++|-|+++..+ .+.-.+-|--. .++ +++++|.. |++- +-=
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn----------Kniv------kaD 130 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN----------KNIV------KAD 130 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC----------CCeE------Eee
Confidence 456799999999999999999999995433 33333333221 111 34555543 2221 123
Q ss_pred EEEECCcccccCCCCCeeeeCccC
Q 023259 227 LIVDNNPFSFLLQPLNGIPCIPFS 250 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~I~~F~ 250 (285)
++|||+|.......+|-|.-..=+
T Consensus 131 ilIDDnp~nLE~F~G~kIlFdA~H 154 (180)
T COG4502 131 ILIDDNPLNLENFKGNKILFDAHH 154 (180)
T ss_pred EEecCCchhhhhccCceEEEeccc
Confidence 799999999988889988766654
No 125
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.46 E-value=0.085 Score=44.86 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=28.9
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHH---HHHHHh
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYAR---PLVDRI 189 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~---~Vl~~L 189 (285)
..|++.++++.+.+. |.+++.|+.....+. ..++.+
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 479999999999988 888888888777664 666664
No 126
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.29 E-value=0.13 Score=48.60 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 158 LREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 158 l~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
..+-|+.|.+. ..+++.|.-+..-+..+.+.+....
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 56778888877 8888888888888888888887653
No 127
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=94.19 E-value=0.11 Score=47.78 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=24.6
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
=||+.++|++|.+. ..+++.|+++..-...+++++
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l 55 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF 55 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 47889999999976 889999986544333333333
No 128
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.00 E-value=0.12 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhc
Q 023259 158 LREFLKQLSEF-ADLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 158 l~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LD 190 (285)
..+-|+++.+. ..+++-|.-....+..+++.++
T Consensus 20 ~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 20 ALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 34455566555 6666666666666666666665
No 129
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.93 E-value=0.096 Score=49.48 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred CccHHHHHHHhhh-----cceEEEEccCc----hhhHHHHHHHhc
Q 023259 155 RPGLREFLKQLSE-----FADLILFTAGL----EGYARPLVDRID 190 (285)
Q Consensus 155 RPgl~eFL~~ls~-----~yeIvI~Ta~~----~~YA~~Vl~~LD 190 (285)
-||+.++|+.+.. ...+.+.|++. +.+++.+.++++
T Consensus 18 i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG 62 (321)
T TIGR01456 18 IAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLG 62 (321)
T ss_pred cHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcC
Confidence 5777888888876 57778888775 344555544443
No 130
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=93.92 E-value=0.11 Score=47.09 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=30.4
Q ss_pred cHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 157 GLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 157 gl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
...+.++.+.+. ..+++-|.-....+..+++.++..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 467899999988 889999988888899999988753
No 131
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.75 E-value=0.15 Score=46.36 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=22.6
Q ss_pred ccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh
Q 023259 156 PGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 156 Pgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
|+..++|++|.+. ..+++.|+++..-.+.+.+++
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l 54 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML 54 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 6788999999877 888888875433333333333
No 132
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.66 E-value=0.054 Score=46.72 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=61.6
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEec-Cc-ccccC-C-----c-----ccccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYR-PS-TTSTE-Y-----R-----EHVKDLS 217 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r-~~-c~~~k-~-----~-----~~~KdL~ 217 (285)
...+||+.++|+.+.+. +.++|-|++...+++.+++.++...+|...+.. ++ ....+ . + ....-++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 35799999999999887 999999999999999999999887777653332 11 11000 0 0 0111123
Q ss_pred ccCCCCCcEEEEECCcccccCCC
Q 023259 218 CLSKDLCRTLIVDNNPFSFLLQP 240 (285)
Q Consensus 218 ~Lgrdl~~vVIVDDs~~~~~~~p 240 (285)
..+.+.++++.+-|+..-.....
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~ 188 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLS 188 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHH
Confidence 34667889999999987765433
No 133
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=93.64 E-value=0.14 Score=44.40 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhc
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LD 190 (285)
.|.+.+.|++|.+. ..++|-|......+..+++.++
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 56778889999887 8899999999999999888743
No 134
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=93.37 E-value=0.089 Score=48.34 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=66.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc-eeEEE-----------ecCcc----------c---
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL-FSLRL-----------YRPST----------T--- 205 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~-f~~~l-----------~r~~c----------~--- 205 (285)
...=|.+.++++.+++. ..++..|+..+.+...-++.|-..+. |+... +...+ .
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 55678999999999977 99999999999999888887754331 22211 11110 0
Q ss_pred -ccCCccccccccccCCCCCcEEEEECCccccc----CCCCCeeeeCccCCC
Q 023259 206 -STEYREHVKDLSCLSKDLCRTLIVDNNPFSFL----LQPLNGIPCIPFSAG 252 (285)
Q Consensus 206 -~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~----~~p~NgI~I~~F~~g 252 (285)
..+......=|..+|..++++|+|||+..... .....+|..--|+..
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 00101223445667999999999999998653 244466665555544
No 135
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.37 E-value=0.039 Score=50.42 Aligned_cols=90 Identities=10% Similarity=-0.059 Sum_probs=70.4
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
....+-+ ++|+.+++. +.|++.|+....+= .++..++...+|++++..-.....|.. .|.+-|++++..++.+|.
T Consensus 113 ~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vh 190 (237)
T KOG3085|consen 113 KYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVH 190 (237)
T ss_pred eeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEE
Confidence 3344444 999999988 89999999998876 778888888889988875554555543 788999999999999999
Q ss_pred EECCccc-ccCCCCCe
Q 023259 229 VDNNPFS-FLLQPLNG 243 (285)
Q Consensus 229 VDDs~~~-~~~~p~Ng 243 (285)
|||+..+ +.....-|
T Consensus 191 IgD~l~nD~~gA~~~G 206 (237)
T KOG3085|consen 191 IGDLLENDYEGARNLG 206 (237)
T ss_pred ecCccccccHhHHHcC
Confidence 9999988 55444333
No 136
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.27 E-value=0.31 Score=50.80 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=46.2
Q ss_pred cccccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhh
Q 023259 87 VSEERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLS 166 (285)
Q Consensus 87 ~~~~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls 166 (285)
.+.....++.+++||||||++.... +. +-..+-|+.+.
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~----------------------------------------i~--~~t~eAL~~L~ 446 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTY----------------------------------------SY--STALDALRLLK 446 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCc----------------------------------------cC--HHHHHHHHHHH
Confidence 3344567889999999999974210 11 12355677888
Q ss_pred hc-ceEEEEccCchhhHHHHHHHhcCC
Q 023259 167 EF-ADLILFTAGLEGYARPLVDRIDGE 192 (285)
Q Consensus 167 ~~-yeIvI~Ta~~~~YA~~Vl~~LDp~ 192 (285)
+. ..+++-|.-....+..+++.++..
T Consensus 447 ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 447 DKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 77 888999998888888888888754
No 137
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=92.93 E-value=0.18 Score=46.92 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=31.2
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcC
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDG 191 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp 191 (285)
=||+.+||++|.+. -.+++-|+++..-.+.+.++|..
T Consensus 26 ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 26 IPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred CchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 48999999999988 88999999988777767666654
No 138
>PTZ00174 phosphomannomutase; Provisional
Probab=92.91 E-value=0.24 Score=44.83 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
..+.+++||||||+++
T Consensus 4 ~~klia~DlDGTLL~~ 19 (247)
T PTZ00174 4 KKTILLFDVDGTLTKP 19 (247)
T ss_pred CCeEEEEECcCCCcCC
Confidence 3678999999999975
No 139
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=92.75 E-value=0.04 Score=49.88 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=46.1
Q ss_pred EeeCccHHHHHHHhhhc--ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccc
Q 023259 152 VFERPGLREFLKQLSEF--ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTS 206 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~--yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~ 206 (285)
+..-||+-+.++.+++. ||++|-|.+..-+.+.+++..+...+|+.+++-..|..
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~d 139 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVD 139 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccC
Confidence 56789999999999977 89999999999999999999987777776665555543
No 140
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.55 E-value=0.23 Score=44.75 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=23.4
Q ss_pred ccHHHHHHHhhhc-ceEEEEccCch----hhHHHHHH
Q 023259 156 PGLREFLKQLSEF-ADLILFTAGLE----GYARPLVD 187 (285)
Q Consensus 156 Pgl~eFL~~ls~~-yeIvI~Ta~~~----~YA~~Vl~ 187 (285)
|++.++|+.+.+. +.+++-|++.. .+++.+.+
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5888999999877 88999986654 34444444
No 141
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=91.92 E-value=0.21 Score=45.48 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=36.7
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc--eeEEEecC
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL--FSLRLYRP 202 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~--f~~~l~r~ 202 (285)
..-|++.+|++.+.+. ++|++.|.-.+...+...+.|...++ +...+.|.
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 4679999999999988 99999999888775555555544442 35566664
No 142
>PLN02423 phosphomannomutase
Probab=91.41 E-value=0.42 Score=43.37 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=12.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
.|..+++||||||+++
T Consensus 6 ~~~i~~~D~DGTLl~~ 21 (245)
T PLN02423 6 PGVIALFDVDGTLTAP 21 (245)
T ss_pred cceEEEEeccCCCcCC
Confidence 4556669999999974
No 143
>PLN02887 hydrolase family protein
Probab=91.29 E-value=0.43 Score=49.03 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=42.0
Q ss_pred cccCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhc
Q 023259 89 EERLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEF 168 (285)
Q Consensus 89 ~~~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~ 168 (285)
..-.+.+.+++||||||+++.+ . .-|...+-|+++.+.
T Consensus 303 ~~~~~iKLIa~DLDGTLLn~d~--~----------------------------------------Is~~t~eAI~kl~ek 340 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLNSKS--Q----------------------------------------ISETNAKALKEALSR 340 (580)
T ss_pred hhccCccEEEEeCCCCCCCCCC--c----------------------------------------cCHHHHHHHHHHHHC
Confidence 3344677899999999997421 1 123345667777776
Q ss_pred -ceEEEEccCchhhHHHHHHHhcC
Q 023259 169 -ADLILFTAGLEGYARPLVDRIDG 191 (285)
Q Consensus 169 -yeIvI~Ta~~~~YA~~Vl~~LDp 191 (285)
..++|-|.-...-+..+++.++.
T Consensus 341 Gi~~vIATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 341 GVKVVIATGKARPAVIDILKMVDL 364 (580)
T ss_pred CCeEEEEcCCCHHHHHHHHHHhCc
Confidence 77778787777777777777764
No 144
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=90.76 E-value=0.39 Score=43.26 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=20.0
Q ss_pred CccHHHHHHHhhhcc-eEEEEccCchhhHHHHHHHhc
Q 023259 155 RPGLREFLKQLSEFA-DLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 155 RPgl~eFL~~ls~~y-eIvI~Ta~~~~YA~~Vl~~LD 190 (285)
.|.+.+.++.+.+.. .+++-|.-+..-++.+++.+.
T Consensus 23 ~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~ 59 (249)
T TIGR01485 23 LLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKP 59 (249)
T ss_pred HHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCC
Confidence 456666666666553 445555555555555555444
No 145
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=90.72 E-value=0.43 Score=48.68 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=61.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVD 230 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVD 230 (285)
-..|||+.++|++|++. ++++|-|...+.+++.+++.++.+ + +. .+........++.+ ..+.++++.|-
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~-----~~-~~~p~~K~~~v~~l---~~~~~~v~~VG 473 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-V-----RA-EVLPDDKAALIKEL---QEKGRVVAMVG 473 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-E-----Ec-cCChHHHHHHHHHH---HHcCCEEEEEe
Confidence 45799999999999987 999999999999999999999774 2 22 11111111233333 33568899999
Q ss_pred CCcccccCCCCCeeee
Q 023259 231 NNPFSFLLQPLNGIPC 246 (285)
Q Consensus 231 Ds~~~~~~~p~NgI~I 246 (285)
|...-...-...++.|
T Consensus 474 Dg~nD~~al~~A~vgi 489 (562)
T TIGR01511 474 DGINDAPALAQADVGI 489 (562)
T ss_pred CCCccHHHHhhCCEEE
Confidence 9988776655555554
No 146
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=90.35 E-value=0.12 Score=44.71 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.8
Q ss_pred EEEEeCCCccccccc
Q 023259 96 TVVLDLDETLVCAYE 110 (285)
Q Consensus 96 tLVLDLD~TLV~s~~ 110 (285)
.++|||||||+++..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 589999999999753
No 147
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=89.71 E-value=0.63 Score=42.80 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.7
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
.+..+++|+||||+..
T Consensus 13 ~~~li~~D~DGTLl~~ 28 (266)
T PRK10187 13 ANYAWFFDLDGTLAEI 28 (266)
T ss_pred CCEEEEEecCCCCCCC
Confidence 3688999999999974
No 148
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=89.59 E-value=0.37 Score=43.52 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=31.1
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
..=||..+|++++.+. ++|++-|.-....-+.-++.|...|
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 3468999999999999 8888888877776566656555433
No 149
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=89.49 E-value=0.54 Score=40.22 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=59.5
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC--ceeEEEecCcccccCCccccccccccCCCCCcEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN--LFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~--~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVI 228 (285)
-..||++.++|++|++. +.++|.|......|..+.+.++... .|.... +. ..+..+.+-++.|+.+.+.|+.
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~----~k-P~~k~~~~~i~~l~~~~~~v~~ 200 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVI----GK-PEPKIFLRIIKELQVKPGEVAM 200 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE----TT-THHHHHHHHHHHHTCTGGGEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccccccccccc----cc-ccchhHHHHHHHHhcCCCEEEE
Confidence 56799999999999998 9999999999999999999998854 222222 11 1112346666778878889999
Q ss_pred EECCcc
Q 023259 229 VDNNPF 234 (285)
Q Consensus 229 VDDs~~ 234 (285)
|-|...
T Consensus 201 vGDg~n 206 (215)
T PF00702_consen 201 VGDGVN 206 (215)
T ss_dssp EESSGG
T ss_pred EccCHH
Confidence 998763
No 150
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=89.12 E-value=0.54 Score=43.24 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=28.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhh-HHHHHHHhcCC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGY-ARPLVDRIDGE 192 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~Y-A~~Vl~~LDp~ 192 (285)
-+.=||+-|||+++-++ -.|+--|+-..+. ...-++.|-..
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~ 163 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSE 163 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHc
Confidence 44569999999999999 5555556666655 55556655433
No 151
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=88.46 E-value=0.27 Score=42.90 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.0
Q ss_pred ceEEEEeCCCccccccc
Q 023259 94 KLTVVLDLDETLVCAYE 110 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~~ 110 (285)
.+.++|||||||+++..
T Consensus 2 ~~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSG 18 (221)
T ss_pred ceEEEEeCCCCCcCCCC
Confidence 35799999999999753
No 152
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=88.26 E-value=0.24 Score=41.77 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.3
Q ss_pred eEEEEeCCCcccccc
Q 023259 95 LTVVLDLDETLVCAY 109 (285)
Q Consensus 95 ~tLVLDLD~TLV~s~ 109 (285)
+.++||+||||+++.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 578999999999974
No 153
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=87.94 E-value=0.84 Score=39.51 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=45.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchh----hHH---HHHHHhcCCCceeEEEecCcccccCCccccccccccCCCC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEG----YAR---PLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDL 223 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~----YA~---~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl 223 (285)
...=||+.|.|+.|.+. +++++-|+.... .++ ..+++.-+.-.....++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~----------K~--~v~~D- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD----------KT--LVGGD- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS----------GG--GC--S-
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC----------CC--eEecc-
Confidence 55679999999999998 588877777654 222 23333322211233333221 21 23333
Q ss_pred CcEEEEECCcccccCCCCCeeeeC
Q 023259 224 CRTLIVDNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 224 ~~vVIVDDs~~~~~~~p~NgI~I~ 247 (285)
|+|||++.........|+++-
T Consensus 139 ---vlIDD~~~n~~~~~~~g~~~i 159 (191)
T PF06941_consen 139 ---VLIDDRPHNLEQFANAGIPVI 159 (191)
T ss_dssp ---EEEESSSHHHSS-SSESSEEE
T ss_pred ---EEecCChHHHHhccCCCceEE
Confidence 899999999887777774443
No 154
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=87.68 E-value=0.28 Score=42.35 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=12.8
Q ss_pred eEEEEeCCCcccccc
Q 023259 95 LTVVLDLDETLVCAY 109 (285)
Q Consensus 95 ~tLVLDLD~TLV~s~ 109 (285)
+.|+|||||||+++.
T Consensus 1 k~viFDlDGTL~d~~ 15 (203)
T TIGR02252 1 KLITFDAVGTLLALK 15 (203)
T ss_pred CeEEEecCCceeeeC
Confidence 468999999999863
No 155
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=87.39 E-value=0.33 Score=43.63 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=13.6
Q ss_pred ceEEEEeCCCcccccc
Q 023259 94 KLTVVLDLDETLVCAY 109 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~ 109 (285)
-+.++||+||||+++.
T Consensus 2 ~k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFG 17 (253)
T ss_pred ceEEEEeCCCCeecCC
Confidence 3579999999999963
No 156
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=87.35 E-value=0.3 Score=44.45 Aligned_cols=16 Identities=25% Similarity=0.073 Sum_probs=13.9
Q ss_pred ceEEEEeCCCcccccc
Q 023259 94 KLTVVLDLDETLVCAY 109 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~ 109 (285)
-+.++||+||||+++.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 4689999999999973
No 157
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=87.32 E-value=0.34 Score=43.77 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.5
Q ss_pred CceEEEEeCCCcccccc
Q 023259 93 QKLTVVLDLDETLVCAY 109 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~ 109 (285)
.-+.++|||||||+++.
T Consensus 21 ~~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 21 PLEAVLFDVDGTLCDSD 37 (248)
T ss_pred ccCEEEEcCCCccCcCH
Confidence 35689999999999975
No 158
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=87.20 E-value=0.4 Score=42.42 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=69.5
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHH----HhcCCCceeEEEecCcccccCCccccccccccCCCCCcE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVD----RIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRT 226 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~----~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~v 226 (285)
-.+=|.+-+++++-.+. ..++|||+|+-. |+++.- ..|..++|+..+....-...+...|.|.+..+|-++..+
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~-AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVK-AQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCch-hHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 45668899999998877 999999999754 444332 335556777766554433344458999999999999999
Q ss_pred EEEECCcccccCCCCCeee
Q 023259 227 LIVDNNPFSFLLQPLNGIP 245 (285)
Q Consensus 227 VIVDDs~~~~~~~p~NgI~ 245 (285)
+++-|++.......+-|+.
T Consensus 181 lFLSDn~~EL~AA~~vGl~ 199 (229)
T COG4229 181 LFLSDNPEELKAAAGVGLA 199 (229)
T ss_pred EEecCCHHHHHHHHhcchh
Confidence 9999999988766666654
No 159
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=87.12 E-value=0.3 Score=43.79 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.8
Q ss_pred ceEEEEeCCCcccccc
Q 023259 94 KLTVVLDLDETLVCAY 109 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~ 109 (285)
-+.++|||||||+++.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 4689999999999963
No 160
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=86.72 E-value=0.93 Score=43.65 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=44.9
Q ss_pred eEEEeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh-c-------CCCceeEEEec
Q 023259 149 HVTVFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI-D-------GENLFSLRLYR 201 (285)
Q Consensus 149 ~~~V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L-D-------p~~~f~~~l~r 201 (285)
.-||.+-||+.++|+.|++. ..+.|-|++...|++.+++.+ + -..+|+.++..
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 34688899999999999988 999999999999999999997 5 24577766654
No 161
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=86.26 E-value=0.29 Score=41.29 Aligned_cols=15 Identities=33% Similarity=0.518 Sum_probs=12.7
Q ss_pred EEEEeCCCccccccc
Q 023259 96 TVVLDLDETLVCAYE 110 (285)
Q Consensus 96 tLVLDLD~TLV~s~~ 110 (285)
.+|||+||||+++..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999753
No 162
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=86.03 E-value=2.2 Score=39.93 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=36.9
Q ss_pred eCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc--eeEEEecCc
Q 023259 154 ERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL--FSLRLYRPS 203 (285)
Q Consensus 154 ~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~--f~~~l~r~~ 203 (285)
.=|++.+|++++.+. ++|++.|.-.+..-+.=++.|...|+ ....+.|+.
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~ 198 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDP 198 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCC
Confidence 458999999999988 99999998887766666666665564 245566643
No 163
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=85.36 E-value=0.32 Score=42.06 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=11.5
Q ss_pred EEEeCCCcccccc
Q 023259 97 VVLDLDETLVCAY 109 (285)
Q Consensus 97 LVLDLD~TLV~s~ 109 (285)
+|||+||||+++.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999974
No 164
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=84.96 E-value=0.49 Score=43.94 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.8
Q ss_pred CceEEEEeCCCcccccc
Q 023259 93 QKLTVVLDLDETLVCAY 109 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~ 109 (285)
+-+.+|||+||||+++.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 45789999999999975
No 165
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=84.92 E-value=0.43 Score=40.04 Aligned_cols=13 Identities=38% Similarity=0.373 Sum_probs=11.6
Q ss_pred EEEeCCCcccccc
Q 023259 97 VVLDLDETLVCAY 109 (285)
Q Consensus 97 LVLDLD~TLV~s~ 109 (285)
|+||+||||+++.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999964
No 166
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=84.71 E-value=0.48 Score=40.76 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=12.9
Q ss_pred eEEEEeCCCcccccc
Q 023259 95 LTVVLDLDETLVCAY 109 (285)
Q Consensus 95 ~tLVLDLD~TLV~s~ 109 (285)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 468999999999864
No 167
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=84.70 E-value=0.47 Score=41.18 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.2
Q ss_pred eEEEEeCCCcccccc
Q 023259 95 LTVVLDLDETLVCAY 109 (285)
Q Consensus 95 ~tLVLDLD~TLV~s~ 109 (285)
+.++||+||||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 579999999999964
No 168
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=84.65 E-value=0.59 Score=47.29 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=65.3
Q ss_pred EeeCccHHHHHHHhhhc-c-eEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEF-A-DLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-y-eIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIV 229 (285)
...|||+.+.|++|++. + +++|-|+..+.+|+.+++.++..++|..... ..-.+-++.+....++++.|
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p---------~~K~~~i~~l~~~~~~v~~v 431 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLP---------EDKLEIVKELREKYGPVAMV 431 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCc---------HHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999988 8 9999999999999999999998776542211 11123444455566899999
Q ss_pred ECCcccccCCCCCeeeeC
Q 023259 230 DNNPFSFLLQPLNGIPCI 247 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I~ 247 (285)
-|...-.......++-|.
T Consensus 432 GDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 432 GDGINDAPALAAADVGIA 449 (536)
T ss_pred eCCHHHHHHHHhCCEEEE
Confidence 999887766555555443
No 169
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=84.16 E-value=1.2 Score=40.09 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.4
Q ss_pred CceEEEEeCCCcccc
Q 023259 93 QKLTVVLDLDETLVC 107 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~ 107 (285)
++..|+||+||||+.
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 578899999999996
No 170
>PRK09449 dUMP phosphatase; Provisional
Probab=83.91 E-value=0.52 Score=41.28 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.4
Q ss_pred ceEEEEeCCCcccc
Q 023259 94 KLTVVLDLDETLVC 107 (285)
Q Consensus 94 k~tLVLDLD~TLV~ 107 (285)
-+.++|||||||++
T Consensus 3 ~k~iiFDlDGTLid 16 (224)
T PRK09449 3 YDWILFDADETLFH 16 (224)
T ss_pred ccEEEEcCCCchhc
Confidence 36899999999997
No 171
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=83.30 E-value=0.66 Score=40.30 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.7
Q ss_pred eEEEEeCCCccccc
Q 023259 95 LTVVLDLDETLVCA 108 (285)
Q Consensus 95 ~tLVLDLD~TLV~s 108 (285)
+.+||||||||+++
T Consensus 3 k~viFDldGtL~d~ 16 (211)
T TIGR02247 3 KAVIFDFGGVLLPS 16 (211)
T ss_pred eEEEEecCCceecC
Confidence 57999999999986
No 172
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=82.38 E-value=2.3 Score=39.54 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred cCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcce
Q 023259 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFAD 170 (285)
Q Consensus 91 ~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~ye 170 (285)
..+|.+++||.||||...... |. -+..=+++.+.|..|+..+.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~---p~----------------------------------~a~~~~~l~~lL~~Las~~~ 57 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPH---PE----------------------------------AAVPDDRLLSLLQDLASDPR 57 (266)
T ss_pred cccceEEEEeccccccccccC---cc----------------------------------ccCCCHHHHHHHHHHHhcCC
Confidence 347889999999999974211 11 02345778899999999988
Q ss_pred --EEEEccCchhhHHHHHH
Q 023259 171 --LILFTAGLEGYARPLVD 187 (285)
Q Consensus 171 --IvI~Ta~~~~YA~~Vl~ 187 (285)
++|.|--+..-.+..+.
T Consensus 58 ~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 58 NVVAIISGRSLAELERLFG 76 (266)
T ss_pred CeEEEEeCCCHHHHHHhcC
Confidence 77777777777766666
No 173
>PLN03017 trehalose-phosphatase
Probab=82.30 E-value=2.2 Score=41.49 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=13.9
Q ss_pred cCCceEEEEeCCCcccc
Q 023259 91 RLQKLTVVLDLDETLVC 107 (285)
Q Consensus 91 ~~~k~tLVLDLD~TLV~ 107 (285)
..++..|+||+||||+-
T Consensus 108 ~~k~~llflD~DGTL~P 124 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSP 124 (366)
T ss_pred cCCCeEEEEecCCcCcC
Confidence 34678889999999993
No 174
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=82.23 E-value=1.1 Score=45.57 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=63.4
Q ss_pred EeeCccHHHHHHHhhhc--ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEE
Q 023259 152 VFERPGLREFLKQLSEF--ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIV 229 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~--yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIV 229 (285)
...|||+.+.|++|++. ++++|-|...+.+++.+++.++...+|....- ..| ... ++.+.....+++.|
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~p-----~~K-~~~---v~~l~~~~~~v~~v 453 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELLP-----EDK-LAI---VKELQEEGGVVAMV 453 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCCH-----HHH-HHH---HHHHHHcCCEEEEE
Confidence 56899999999999865 89999999999999999999998766653211 111 123 33334455699999
Q ss_pred ECCcccccCCCCCeeee
Q 023259 230 DNNPFSFLLQPLNGIPC 246 (285)
Q Consensus 230 DDs~~~~~~~p~NgI~I 246 (285)
-|...-.......++-|
T Consensus 454 GDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 454 GDGINDAPALAAADVGI 470 (556)
T ss_pred ECChhHHHHHhhCCEeE
Confidence 99998776655555544
No 175
>PLN02151 trehalose-phosphatase
Probab=81.65 E-value=2.6 Score=40.77 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.6
Q ss_pred CCceEEEEeCCCcccc
Q 023259 92 LQKLTVVLDLDETLVC 107 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~ 107 (285)
.++..|+||+||||+-
T Consensus 96 ~~~~ll~lDyDGTL~P 111 (354)
T PLN02151 96 GKQIVMFLDYDGTLSP 111 (354)
T ss_pred CCceEEEEecCccCCC
Confidence 3678899999999994
No 176
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=80.09 E-value=0.78 Score=38.32 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.9
Q ss_pred EEEEeCCCcccccc
Q 023259 96 TVVLDLDETLVCAY 109 (285)
Q Consensus 96 tLVLDLD~TLV~s~ 109 (285)
.++|||||||+++.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999863
No 177
>PLN02580 trehalose-phosphatase
Probab=80.07 E-value=3.4 Score=40.44 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=45.6
Q ss_pred cCCceEEEEeCCCcccccccCCCCchhhcccccccCccceeeccccCCccCCCCcccceEEEeeCccHHHHHHHhhhcce
Q 023259 91 RLQKLTVVLDLDETLVCAYETSSLPVTLRNQATGAGLKWFEMECLSSDKECEGKPKINHVTVFERPGLREFLKQLSEFAD 170 (285)
Q Consensus 91 ~~~k~tLVLDLD~TLV~s~~~s~lp~~~~~~~~~~~~~~F~l~~~~~~~~~~g~~~~~~~~V~~RPgl~eFL~~ls~~ye 170 (285)
..++..|+||.||||.--.. .|. -+..=|++.+-|+.|++.+.
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~---~Pd----------------------------------~A~~s~~~~~aL~~La~~~~ 158 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVD---DPD----------------------------------RALMSDAMRSAVKNVAKYFP 158 (384)
T ss_pred hcCCeEEEEecCCccCCCCC---Ccc----------------------------------cccCCHHHHHHHHHHhhCCC
Confidence 34677888999999985211 111 13456899999999999999
Q ss_pred EEEEccCchhhHHHHHHH
Q 023259 171 LILFTAGLEGYARPLVDR 188 (285)
Q Consensus 171 IvI~Ta~~~~YA~~Vl~~ 188 (285)
++|-|--...-++.++..
T Consensus 159 VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 159 TAIISGRSRDKVYELVGL 176 (384)
T ss_pred EEEEeCCCHHHHHHHhCC
Confidence 999998888877777653
No 178
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=79.86 E-value=0.86 Score=37.12 Aligned_cols=13 Identities=46% Similarity=0.649 Sum_probs=11.4
Q ss_pred EEEeCCCcccccc
Q 023259 97 VVLDLDETLVCAY 109 (285)
Q Consensus 97 LVLDLD~TLV~s~ 109 (285)
|+||+||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999864
No 179
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=79.76 E-value=3.8 Score=35.19 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=27.3
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
+.+||+.++...+.+. |.++=-|+-.-..|...-+.|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 4699999999999999 877777777655554443333
No 180
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=77.36 E-value=0.96 Score=44.73 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.2
Q ss_pred ceEEEEeCCCccccccc
Q 023259 94 KLTVVLDLDETLVCAYE 110 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~~ 110 (285)
.+.++|||||||+++..
T Consensus 241 ~k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 241 LQALIFDMDGTLFQTDK 257 (459)
T ss_pred hhheeEccCCceecchh
Confidence 36799999999999743
No 181
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=75.19 E-value=4.3 Score=42.63 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=24.4
Q ss_pred CccHHHHHHHhhh--cceEEEEccCchhhHHHHHHHh
Q 023259 155 RPGLREFLKQLSE--FADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 155 RPgl~eFL~~ls~--~yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
-|.+.+.|+.|.+ ...++|-|.-.....+..+..+
T Consensus 516 ~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 516 DKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDL 552 (726)
T ss_pred CHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 4567778888887 3677777877777666665543
No 182
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=73.73 E-value=9.5 Score=34.94 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 160 EFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 160 eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
..+.++.+. |+|+.-|+-+..=....-+.|+..+
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 456677777 9999988887766666677777664
No 183
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=71.71 E-value=8.4 Score=34.10 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=33.0
Q ss_pred eeCccHHHHHH-Hhhh-cceEEEEccCchhhHHHHHHHh
Q 023259 153 FERPGLREFLK-QLSE-FADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 153 ~~RPgl~eFL~-~ls~-~yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
..+||+.+.|+ ++++ -+.++|-|++...|++++++..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 57999999995 7885 5999999999999999999774
No 184
>PLN02382 probable sucrose-phosphatase
Probab=71.66 E-value=7.9 Score=38.05 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.6
Q ss_pred CCceEEEEeCCCccccc
Q 023259 92 LQKLTVVLDLDETLVCA 108 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s 108 (285)
..++.|+.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 35889999999999974
No 185
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=71.42 E-value=7.1 Score=35.43 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=12.2
Q ss_pred ceEEEEeCCCccc
Q 023259 94 KLTVVLDLDETLV 106 (285)
Q Consensus 94 k~tLVLDLD~TLV 106 (285)
++.|+-||||||+
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6889999999999
No 186
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=70.82 E-value=4.6 Score=37.16 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=50.7
Q ss_pred EEeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCC--C--ceeEEEecCcc----cccCC--cccccccccc
Q 023259 151 TVFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGE--N--LFSLRLYRPST----TSTEY--REHVKDLSCL 219 (285)
Q Consensus 151 ~V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~--~--~f~~~l~r~~c----~~~k~--~~~~KdL~~L 219 (285)
-+.+|.|+++|++.|.++ --+.|||||.-.-.+.+++..... + .++..+.-++. .+... ..+.|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 378999999999999988 899999999999999999987421 1 23443332211 11111 0234443333
Q ss_pred --------CCCCCcEEEEECCccccc
Q 023259 220 --------SKDLCRTLIVDNNPFSFL 237 (285)
Q Consensus 220 --------grdl~~vVIVDDs~~~~~ 237 (285)
-....|+|++=|+..-..
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~ 193 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLH 193 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGG
T ss_pred cCchHHHHhccCCcEEEecCccCChH
Confidence 135688999999998654
No 187
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=70.56 E-value=6.6 Score=32.96 Aligned_cols=45 Identities=16% Similarity=0.455 Sum_probs=36.4
Q ss_pred CccHH----HHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC--ceeEEE
Q 023259 155 RPGLR----EFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN--LFSLRL 199 (285)
Q Consensus 155 RPgl~----eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~--~f~~~l 199 (285)
+|++. +||+.+.+. ++++|-|++...+++.+++.++... .+...+
T Consensus 87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred CcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 45555 999999755 9999999999999999999887654 444444
No 188
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=69.44 E-value=28 Score=29.15 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=53.1
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccC-chhhHHHHHHHhcCCCceeEEEecCcccccC--C---cccccccccc-CCCC
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAG-LEGYARPLVDRIDGENLFSLRLYRPSTTSTE--Y---REHVKDLSCL-SKDL 223 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~-~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k--~---~~~~KdL~~L-grdl 223 (285)
...=|....-|..|++. -++++-+.+ .+.+|.+.|+.+....-+..+-..+...+.. + -.+.|++..- +...
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~~ 122 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSIE 122 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCcccchhHHHHhhccCcch
Confidence 34457788889999988 999999877 6789999999987543222211111111000 0 1334666543 5677
Q ss_pred CcEEEEECCccc
Q 023259 224 CRTLIVDNNPFS 235 (285)
Q Consensus 224 ~~vVIVDDs~~~ 235 (285)
++..+.||....
T Consensus 123 k~~~~fdDesrn 134 (144)
T KOG4549|consen 123 KNKQVFDDESRN 134 (144)
T ss_pred hceeeecccccC
Confidence 888888887644
No 189
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=69.26 E-value=2.6 Score=37.32 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.9
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
-++..+||+||||++.
T Consensus 4 ~~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQ 19 (210)
T ss_pred cCcEEEEcCCCCCccC
Confidence 4778999999999985
No 190
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=69.14 E-value=2.8 Score=36.23 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=11.8
Q ss_pred EEEEeCCCccccc
Q 023259 96 TVVLDLDETLVCA 108 (285)
Q Consensus 96 tLVLDLD~TLV~s 108 (285)
++||||||||++.
T Consensus 2 ~viFDldgvL~d~ 14 (199)
T PRK09456 2 LYIFDLGNVIVDI 14 (199)
T ss_pred EEEEeCCCccccC
Confidence 6899999999985
No 191
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.11 E-value=2.9 Score=36.28 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.9
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
..+.++||+||||++.
T Consensus 3 ~~k~i~FD~d~TL~d~ 18 (229)
T COG1011 3 MIKAILFDLDGTLLDF 18 (229)
T ss_pred ceeEEEEecCCccccc
Confidence 4678999999999985
No 192
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=67.24 E-value=5.2 Score=40.45 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=19.9
Q ss_pred hcceEEEEccCchhhHHHHHHH-hcCC
Q 023259 167 EFADLILFTAGLEGYARPLVDR-IDGE 192 (285)
Q Consensus 167 ~~yeIvI~Ta~~~~YA~~Vl~~-LDp~ 192 (285)
++-+.+|-|++.+.|++++++. ++-+
T Consensus 121 ~~g~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 121 SFGKRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred hCCCEEEEECCcHHHHHHHHHHcCCCC
Confidence 3334599999999999999976 5433
No 193
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=64.52 E-value=3.9 Score=34.40 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=10.7
Q ss_pred EEEeCCCccccc
Q 023259 97 VVLDLDETLVCA 108 (285)
Q Consensus 97 LVLDLD~TLV~s 108 (285)
++||+||||+..
T Consensus 1 v~fD~DGTL~~~ 12 (192)
T PF12710_consen 1 VIFDFDGTLTDS 12 (192)
T ss_dssp EEEESBTTTBSS
T ss_pred eEEecCcCeecC
Confidence 589999999975
No 194
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=64.38 E-value=3 Score=34.76 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=10.6
Q ss_pred EEEeCCCccccc
Q 023259 97 VVLDLDETLVCA 108 (285)
Q Consensus 97 LVLDLD~TLV~s 108 (285)
+|||+||||+..
T Consensus 2 ~~fD~DgTl~~~ 13 (177)
T TIGR01488 2 AIFDFDGTLTRQ 13 (177)
T ss_pred EEecCccccccc
Confidence 689999999964
No 195
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=64.38 E-value=0.79 Score=41.17 Aligned_cols=90 Identities=17% Similarity=0.018 Sum_probs=58.7
Q ss_pred CccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEE--EecCcccccCCc--cccccccccCC-CCCcEEE
Q 023259 155 RPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLR--LYRPSTTSTEYR--EHVKDLSCLSK-DLCRTLI 228 (285)
Q Consensus 155 RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~--l~r~~c~~~k~~--~~~KdL~~Lgr-dl~~vVI 228 (285)
-|++.+.|+.+.+. ..+ |-|+....|+...+..++...++... ...+.....|.. .+.+-++.++. +.+++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 48999999998765 666 66999999998777777665544422 233332222322 45566677764 5679999
Q ss_pred EECCc-ccccCCCCCeee
Q 023259 229 VDNNP-FSFLLQPLNGIP 245 (285)
Q Consensus 229 VDDs~-~~~~~~p~NgI~ 245 (285)
|-|+. .-......+|+.
T Consensus 219 vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 219 VGDSFYTDILGANRLGID 236 (242)
T ss_pred ECCCcHHHHHHHHHCCCe
Confidence 99995 445555555553
No 196
>PRK10671 copA copper exporting ATPase; Provisional
Probab=61.53 E-value=6 Score=42.30 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=62.9
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEEC
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDN 231 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDD 231 (285)
..||++.+.|++|.+. +++++.|...+..|+.+++.++...++.... . ..-.+-++.++...++++.|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~~~~------p---~~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAGVL------P---DGKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEeCCC------H---HHHHHHHHHHhhcCCEEEEEeC
Confidence 5799999999999887 9999999999999999999998865443221 1 1112233444555678999999
Q ss_pred CcccccCCCCCeeee
Q 023259 232 NPFSFLLQPLNGIPC 246 (285)
Q Consensus 232 s~~~~~~~p~NgI~I 246 (285)
...-...-...|+-|
T Consensus 721 g~nD~~al~~Agvgi 735 (834)
T PRK10671 721 GINDAPALAQADVGI 735 (834)
T ss_pred CHHHHHHHHhCCeeE
Confidence 988776655566544
No 197
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=59.94 E-value=4.1 Score=36.15 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=15.9
Q ss_pred cccCCCCCcEEEEECCcccccC
Q 023259 217 SCLSKDLCRTLIVDNNPFSFLL 238 (285)
Q Consensus 217 ~~Lgrdl~~vVIVDDs~~~~~~ 238 (285)
+++|.+.++++.+-|+..-...
T Consensus 169 ~~~g~~~~~~i~~GD~~nD~~m 190 (236)
T TIGR02471 169 YRWGLPLEQILVAGDSGNDEEM 190 (236)
T ss_pred HHhCCCHHHEEEEcCCccHHHH
Confidence 4467777888888888776543
No 198
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=59.79 E-value=13 Score=36.57 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=11.8
Q ss_pred CceEEEEeCCCcccc
Q 023259 93 QKLTVVLDLDETLVC 107 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~ 107 (285)
-....|.|||+|||=
T Consensus 196 ~eRVFiWDlDEtiIi 210 (468)
T KOG3107|consen 196 LERVFIWDLDETIII 210 (468)
T ss_pred ceeEEEeeccchHHH
Confidence 345678999999984
No 199
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=59.75 E-value=16 Score=39.54 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
++..++||+||||+..
T Consensus 595 ~~rlI~LDyDGTLlp~ 610 (854)
T PLN02205 595 TTRAILLDYDGTLMPQ 610 (854)
T ss_pred cCeEEEEecCCcccCC
Confidence 5788999999999953
No 200
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=59.06 E-value=4.7 Score=34.48 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.7
Q ss_pred EEEeCCCccccc
Q 023259 97 VVLDLDETLVCA 108 (285)
Q Consensus 97 LVLDLD~TLV~s 108 (285)
.+||+||||+..
T Consensus 2 a~FD~DgTL~~~ 13 (202)
T TIGR01490 2 AFFDFDGTLTAK 13 (202)
T ss_pred eEEccCCCCCCC
Confidence 689999999974
No 201
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=57.17 E-value=14 Score=32.91 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=21.8
Q ss_pred eeCccHHHHHHHhhhcce--EEEEccCchhhHHH
Q 023259 153 FERPGLREFLKQLSEFAD--LILFTAGLEGYARP 184 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~ye--IvI~Ta~~~~YA~~ 184 (285)
..-|++.+.|+.|++... ++|-|.-.....+.
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 457899999999999866 88888777766333
No 202
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=56.00 E-value=1 Score=41.03 Aligned_cols=35 Identities=6% Similarity=-0.037 Sum_probs=24.5
Q ss_pred cccccccccCCCCCcEEEEECCc-ccccCCCCCeee
Q 023259 211 EHVKDLSCLSKDLCRTLIVDNNP-FSFLLQPLNGIP 245 (285)
Q Consensus 211 ~~~KdL~~Lgrdl~~vVIVDDs~-~~~~~~p~NgI~ 245 (285)
.+.+-+++++.+++++++|.|+. .-......+|+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~ 219 (257)
T TIGR01458 184 FFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMR 219 (257)
T ss_pred HHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCe
Confidence 44556677888999999999996 445445555543
No 203
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=54.85 E-value=21 Score=38.21 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=13.1
Q ss_pred CceEEEEeCCCcccc
Q 023259 93 QKLTVVLDLDETLVC 107 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~ 107 (285)
++..++||.||||+.
T Consensus 506 ~~rll~LDyDGTL~~ 520 (797)
T PLN03063 506 NNRLLILGFYGTLTE 520 (797)
T ss_pred cCeEEEEecCccccC
Confidence 568889999999995
No 204
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=53.84 E-value=9.3 Score=40.15 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=38.9
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL 194 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~ 194 (285)
..||++.+.+++|++. .++++-|-..+..|..+.+.++...+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v 488 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDF 488 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEE
Confidence 6899999999999998 99999999999999999999987653
No 205
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=52.10 E-value=12 Score=39.31 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=38.0
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN 193 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~ 193 (285)
..||++.+.+++|++. .++++-|-..+..|..|.+.++...
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~ 486 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 486 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcE
Confidence 3599999999999998 9999999999999999999998764
No 206
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=49.27 E-value=14 Score=38.87 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=38.9
Q ss_pred eeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCc
Q 023259 153 FERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENL 194 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~ 194 (285)
..||++.+.+++|++. .++++-|--.+..|..|.+.++...+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v 483 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRF 483 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceE
Confidence 6799999999999988 99999999999999999999988653
No 207
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=49.09 E-value=35 Score=37.32 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=29.6
Q ss_pred eeCccHHHHHHHhhhc--ceEEEEccCchhhHHHHHHHh
Q 023259 153 FERPGLREFLKQLSEF--ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 153 ~~RPgl~eFL~~ls~~--yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
..-|++.+.|+.|++. ..|+|-|--...-.+..+..+
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 3457899999999976 778999988888887777655
No 208
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=47.68 E-value=11 Score=31.90 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.0
Q ss_pred eEEEEeCCCccccc
Q 023259 95 LTVVLDLDETLVCA 108 (285)
Q Consensus 95 ~tLVLDLD~TLV~s 108 (285)
.+++||.||||...
T Consensus 2 ~~i~fDktGTLt~~ 15 (215)
T PF00702_consen 2 DAICFDKTGTLTQG 15 (215)
T ss_dssp SEEEEECCTTTBES
T ss_pred eEEEEecCCCcccC
Confidence 47899999999864
No 209
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.73 E-value=38 Score=25.77 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=13.9
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
...+|||+=|||.|++
T Consensus 39 ~~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 39 GLVTLVLEEDGTVVDT 54 (78)
T ss_pred CCcEEEEeCCCCEEcc
Confidence 4688999999999974
No 210
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.65 E-value=37 Score=26.00 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=13.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
...+|||+=|||.|++
T Consensus 38 ~~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 38 GVLTLVLEEDGTAVDS 53 (81)
T ss_pred CceEEEEecCCCEEcc
Confidence 3589999999999974
No 211
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=45.42 E-value=14 Score=37.42 Aligned_cols=24 Identities=4% Similarity=0.062 Sum_probs=20.6
Q ss_pred ceEEEEccCchhhHHHHHHH-hcCC
Q 023259 169 ADLILFTAGLEGYARPLVDR-IDGE 192 (285)
Q Consensus 169 yeIvI~Ta~~~~YA~~Vl~~-LDp~ 192 (285)
-+++|-|++.+.++++-++. ++-+
T Consensus 109 g~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 109 DKRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred CeEEEEeCCHHHHHHHHHHHhcCCc
Confidence 48999999999999999998 5543
No 212
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=43.59 E-value=23 Score=34.03 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.1
Q ss_pred EEEeeCc-cHHHHHHHhhhc------ceEEEEccCchhhHHHHHHHh
Q 023259 150 VTVFERP-GLREFLKQLSEF------ADLILFTAGLEGYARPLVDRI 189 (285)
Q Consensus 150 ~~V~~RP-gl~eFL~~ls~~------yeIvI~Ta~~~~YA~~Vl~~L 189 (285)
+.++.|| ++.+.|+.|.+. ++|+|+-.|...-+..+++..
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 3477899 799999999853 889999998876566666554
No 213
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=39.85 E-value=40 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.1
Q ss_pred CCceEEEEeCCCccccc
Q 023259 92 LQKLTVVLDLDETLVCA 108 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s 108 (285)
...+.+-||+|||||+.
T Consensus 73 ~~~K~i~FD~dgtlI~t 89 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDT 89 (422)
T ss_pred CCcceEEEecCCceeec
Confidence 35677899999999985
No 214
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=39.64 E-value=50 Score=24.86 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
...+|||+=|||.|+.
T Consensus 37 ~~~~l~L~eDGT~Vdd 52 (74)
T smart00266 37 SPVTLVLEEDGTIVDD 52 (74)
T ss_pred CCcEEEEecCCcEEcc
Confidence 3688999999999974
No 215
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=38.85 E-value=19 Score=30.91 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=11.9
Q ss_pred ceEEEEeCCCcccccc
Q 023259 94 KLTVVLDLDETLVCAY 109 (285)
Q Consensus 94 k~tLVLDLD~TLV~s~ 109 (285)
|..|.+|+||||.+..
T Consensus 2 ~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFN 17 (191)
T ss_dssp -EEEEEESBTTTB-HH
T ss_pred CcEEEEECCCCCcccH
Confidence 4559999999999864
No 216
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=38.55 E-value=54 Score=24.91 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=14.4
Q ss_pred CCceEEEEeCCCccccc
Q 023259 92 LQKLTVVLDLDETLVCA 108 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s 108 (285)
....+|||+-|||.|+.
T Consensus 38 ~~~~~lvL~eDGTeVdd 54 (78)
T cd01615 38 SAPVTLVLEEDGTEVDD 54 (78)
T ss_pred CCCeEEEEeCCCcEEcc
Confidence 35788999999999964
No 217
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=38.11 E-value=54 Score=25.07 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.8
Q ss_pred CceEEEEeCCCccccc
Q 023259 93 QKLTVVLDLDETLVCA 108 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s 108 (285)
...+|||+-|||.|+.
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 4688999999999974
No 218
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=38.06 E-value=48 Score=25.28 Aligned_cols=15 Identities=40% Similarity=0.251 Sum_probs=13.2
Q ss_pred ceEEEEeCCCccccc
Q 023259 94 KLTVVLDLDETLVCA 108 (285)
Q Consensus 94 k~tLVLDLD~TLV~s 108 (285)
..+|||+-|||.|+.
T Consensus 39 ~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 39 ISSLVLDEDGTGVDT 53 (79)
T ss_pred ccEEEEecCCcEEcc
Confidence 488999999999974
No 219
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=34.68 E-value=19 Score=31.45 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.5
Q ss_pred EEEeCCCccccc
Q 023259 97 VVLDLDETLVCA 108 (285)
Q Consensus 97 LVLDLD~TLV~s 108 (285)
+|+|+||||...
T Consensus 2 ~~fDFDgTit~~ 13 (214)
T TIGR03333 2 IICDFDGTITNN 13 (214)
T ss_pred EEeccCCCCCcc
Confidence 689999999963
No 220
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=33.96 E-value=1.5e+02 Score=24.92 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.7
Q ss_pred EEeCCCccccccc
Q 023259 98 VLDLDETLVCAYE 110 (285)
Q Consensus 98 VLDLD~TLV~s~~ 110 (285)
+|||||.|++...
T Consensus 47 ildL~G~~l~l~S 59 (138)
T PF04312_consen 47 ILDLDGELLDLKS 59 (138)
T ss_pred EEecCCcEEEEEe
Confidence 7999999998543
No 221
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=29.82 E-value=73 Score=32.56 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=14.1
Q ss_pred CceEEEEeCCCcccccc
Q 023259 93 QKLTVVLDLDETLVCAY 109 (285)
Q Consensus 93 ~k~tLVLDLD~TLV~s~ 109 (285)
...++|.|+||||+.|.
T Consensus 49 ~~~t~v~d~~g~Ll~s~ 65 (525)
T PLN02588 49 SNHTLIFNVEGALLKSN 65 (525)
T ss_pred ccceEEEecccceeccC
Confidence 35689999999999863
No 222
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.03 E-value=97 Score=27.96 Aligned_cols=96 Identities=16% Similarity=0.280 Sum_probs=62.8
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCC--ceeEE-EecCccccc---------CCc---ccccc
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGEN--LFSLR-LYRPSTTST---------EYR---EHVKD 215 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~--~f~~~-l~r~~c~~~---------k~~---~~~Kd 215 (285)
..+-||+.|+...|.+. ..+++-|-|-...+.+|.+.|+... .+... ++..+-.+. +.+ .-++-
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 45689999999999988 9999999999999999999998753 44333 222221111 011 12233
Q ss_pred ccccCCCCCcEEEEECCcccccCCCCCeeeeCcc
Q 023259 216 LSCLSKDLCRTLIVDNNPFSFLLQPLNGIPCIPF 249 (285)
Q Consensus 216 L~~Lgrdl~~vVIVDDs~~~~~~~p~NgI~I~~F 249 (285)
|++ +.+-+.++.|=|-..-...-|. |+--.-|
T Consensus 167 lrk-~~~~~~~~mvGDGatDlea~~p-a~afi~~ 198 (227)
T KOG1615|consen 167 LRK-NYNYKTIVMVGDGATDLEAMPP-ADAFIGF 198 (227)
T ss_pred HHh-CCChheeEEecCCccccccCCc-hhhhhcc
Confidence 333 7788888888877666554443 4333444
No 223
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=25.88 E-value=6 Score=36.34 Aligned_cols=90 Identities=19% Similarity=0.014 Sum_probs=52.6
Q ss_pred CccHHHHHHHhhhcceEEEEccCchhhHHH-HHHHhcCCCceeEEE---ecCcccccCCc--cccccccccCCCCCcEEE
Q 023259 155 RPGLREFLKQLSEFADLILFTAGLEGYARP-LVDRIDGENLFSLRL---YRPSTTSTEYR--EHVKDLSCLSKDLCRTLI 228 (285)
Q Consensus 155 RPgl~eFL~~ls~~yeIvI~Ta~~~~YA~~-Vl~~LDp~~~f~~~l---~r~~c~~~k~~--~~~KdL~~Lgrdl~~vVI 228 (285)
-|++.+.|+.|.+.--+.|-|+....+... .+...+...+|..+. .++.....|.. .+.+-++.++.+++++++
T Consensus 145 y~~i~~~l~~L~~~g~~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lm 224 (279)
T TIGR01452 145 YAKLREACAHLREPGCLFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLM 224 (279)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEE
Confidence 578999999998653377888877766421 112222222332221 12222222322 455667778889999999
Q ss_pred EECCc-ccccCCCCCee
Q 023259 229 VDNNP-FSFLLQPLNGI 244 (285)
Q Consensus 229 VDDs~-~~~~~~p~NgI 244 (285)
|-|++ .-......+|+
T Consensus 225 IGD~~~tDI~~A~~aGi 241 (279)
T TIGR01452 225 VGDRLETDILFGHRCGM 241 (279)
T ss_pred ECCChHHHHHHHHHcCC
Confidence 99996 44544445554
No 224
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=25.43 E-value=87 Score=33.22 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=58.0
Q ss_pred EeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEE
Q 023259 152 VFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVD 230 (285)
Q Consensus 152 V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVD 230 (285)
-..||++.+.+++|++. +++++.|...+..|+.+.+.++...++ .+...+....++.|+ . .++++.|-
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~-------~~~p~~K~~~v~~l~---~-~~~v~mvG 635 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA-------GLLPEDKVKAVTELN---Q-HAPLAMVG 635 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec-------CCCHHHHHHHHHHHh---c-CCCEEEEE
Confidence 57899999999999987 999999999999999999999985211 111111123455554 2 25799998
Q ss_pred CCcccccCCCCCeee
Q 023259 231 NNPFSFLLQPLNGIP 245 (285)
Q Consensus 231 Ds~~~~~~~p~NgI~ 245 (285)
|...-...-...++-
T Consensus 636 DgiNDapAl~~A~vg 650 (741)
T PRK11033 636 DGINDAPAMKAASIG 650 (741)
T ss_pred CCHHhHHHHHhCCee
Confidence 877655433333333
No 225
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=25.33 E-value=1.1e+02 Score=27.92 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=29.0
Q ss_pred CccHHHHHHHhh-hcceEEEEccCchhhHHHHHHHhc
Q 023259 155 RPGLREFLKQLS-EFADLILFTAGLEGYARPLVDRID 190 (285)
Q Consensus 155 RPgl~eFL~~ls-~~yeIvI~Ta~~~~YA~~Vl~~LD 190 (285)
=||..|=|+.|. ++-.+-.-|+++++--+.+.++|.
T Consensus 25 vpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~ 61 (262)
T KOG3040|consen 25 VPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQ 61 (262)
T ss_pred CCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHH
Confidence 588999999999 667777889888887777777764
No 226
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=25.28 E-value=98 Score=28.08 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.1
Q ss_pred CCceEEEEeCCCccccc
Q 023259 92 LQKLTVVLDLDETLVCA 108 (285)
Q Consensus 92 ~~k~tLVLDLD~TLV~s 108 (285)
..+.++.||.||||.-+
T Consensus 9 ~~~~l~lfdvdgtLt~~ 25 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPP 25 (252)
T ss_pred CCceEEEEecCCccccc
Confidence 34567778999999864
No 227
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=24.92 E-value=35 Score=31.74 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=10.4
Q ss_pred eEEEEeCCCccc
Q 023259 95 LTVVLDLDETLV 106 (285)
Q Consensus 95 ~tLVLDLD~TLV 106 (285)
...|.|||||||
T Consensus 3 ~VfvWDlDETlI 14 (274)
T TIGR01658 3 NVYVWDMDETLI 14 (274)
T ss_pred eeEEEeccchHH
Confidence 357899999999
No 228
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=20.90 E-value=1.3e+02 Score=30.06 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=38.4
Q ss_pred eEEEeeCccHHHHHHHhhhc-ceEEEEccCchhhHHHHHHHh-cC------C--CceeEEEe
Q 023259 149 HVTVFERPGLREFLKQLSEF-ADLILFTAGLEGYARPLVDRI-DG------E--NLFSLRLY 200 (285)
Q Consensus 149 ~~~V~~RPgl~eFL~~ls~~-yeIvI~Ta~~~~YA~~Vl~~L-Dp------~--~~f~~~l~ 200 (285)
.-||.+-|.+..+|+.+++. -.+.+-|++.-.|++.+++.+ ++ . .+|+-++.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 34678899999999999999 489999999999999999987 33 1 25666654
No 229
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=20.54 E-value=59 Score=28.26 Aligned_cols=80 Identities=11% Similarity=0.020 Sum_probs=52.5
Q ss_pred HHhhhc-ceEEEEccCchhhHHHHHHHhcCCCceeEEEecCcccccCCccccccccccCCCCCcEEEEECCcccccCCCC
Q 023259 163 KQLSEF-ADLILFTAGLEGYARPLVDRIDGENLFSLRLYRPSTTSTEYREHVKDLSCLSKDLCRTLIVDNNPFSFLLQPL 241 (285)
Q Consensus 163 ~~ls~~-yeIvI~Ta~~~~YA~~Vl~~LDp~~~f~~~l~r~~c~~~k~~~~~KdL~~Lgrdl~~vVIVDDs~~~~~~~p~ 241 (285)
+.+.+. .++.|-|.-....++.-++.|..+.++..+.-... -+..-+.+++-+.+++..|=|...-+..-..
T Consensus 45 k~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK~~-------a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~ 117 (170)
T COG1778 45 KLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISDKLA-------AFEELLKKLNLDPEEVAYVGDDLVDLPVMEK 117 (170)
T ss_pred HHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechHhHHH-------HHHHHHHHhCCCHHHhhhhcCccccHHHHHH
Confidence 344455 88999999999999888888887765544322222 2334456678888888888777665554444
Q ss_pred CeeeeCcc
Q 023259 242 NGIPCIPF 249 (285)
Q Consensus 242 NgI~I~~F 249 (285)
-|+.+-+.
T Consensus 118 vGls~a~~ 125 (170)
T COG1778 118 VGLSVAVA 125 (170)
T ss_pred cCCccccc
Confidence 55555554
Done!