BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023261
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 35/245 (14%)
Query: 28 VFFHFIAAESSPANTNDLAQTVRSAFPYLSFQVYLFREKFVTGLISSSIRRALDSPLNYA 87
+ FH + A S AN +A +R + F + + E F +IR S YA
Sbjct: 31 IRFHVLDAGISEANRAAVAANLRGGGGNIRF-IDVNPEDFAG--FPLNIRHI--SITTYA 85
Query: 88 RIYLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANFTKYFSDEF 147
R+ L + + +V+YLD DV+V D + LW L G +GA S +
Sbjct: 86 RLKLGEYI-ADCDKVLYLDIDVLVRDSLTPLWDTDL-GDNWLGA------------SIDL 131
Query: 148 WSDRE---FSRVFEGKRPCYFNTGVMVMDLVRWREGDYTRKIEKWMRIQKERRIYELGSL 204
+ +R+ ++ YFN GV++++L +WR D + +W+ K+ Y+ +
Sbjct: 132 FVERQEGYKQKIGXADGEYYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDI 191
Query: 205 PPFLLVFGGDVEAIDHRWNQHGLGGHNVENSCRNLHAG-----------PVSLMHWSGKG 253
L F G V + R+N N + H PV++ H+ G
Sbjct: 192 LNGL--FKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPA 249
Query: 254 KPWVR 258
KPW R
Sbjct: 250 KPWHR 254
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 101/244 (41%), Gaps = 37/244 (15%)
Query: 30 FHFIAAESSPANTNDLAQTVRSAFPYLSFQVYLFREKFVTGLISSSIRRALDSPLNYARI 89
FH + A S AN +A +R + F + + E F +IR S YAR+
Sbjct: 33 FHVLDAGISEANRAAVAANLRGGGGNIRF-IDVNPEDFAG--FPLNIRHI--SITTYARL 87
Query: 90 YLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANFTK----YFSD 145
L + + +V+YLD DV+V D + LW L G +GA C F + Y
Sbjct: 88 KLGEYI-ADCDKVLYLDIDVLVRDSLTPLWDTDL-GDNWLGA---CIDLFVERQEGYKQK 142
Query: 146 EFWSDREFSRVFEGKRPCYFNTGVMVMDLVRWREGDYTRKIEKWMRIQKERRIYELGSLP 205
+D E+ YFN GV++++L +WR D + +W+ K+ Y+ +
Sbjct: 143 IGMADGEY----------YFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDIL 192
Query: 206 PFLLVFGGDVEAIDHRWNQHGLGGHNVENSCRNLHAG-----------PVSLMHWSGKGK 254
L F G V + R+N + N + H PV++ H+ G K
Sbjct: 193 NGL--FKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAK 250
Query: 255 PWVR 258
PW R
Sbjct: 251 PWHR 254
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 86 YARIYLADILEPSIKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEYCHANFTKYFSD 145
Y R+ + L ++ ++YLD D +V++ + L R +S A H T ++
Sbjct: 88 YYRLLAGEFLPENLGEILYLDPDXLVINPLDDLLRTDISDYILAAA---SHTGKTDXANN 144
Query: 146 EFWSDREFSRVFEGKRPCYFNTGVMVMDLVRWRE 179
+R+ G Y+N+G+++++L R RE
Sbjct: 145 -------VNRIRLGTDTDYYNSGLLLINLKRARE 171
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 99 IKRVIYLDSDVIVVDDIQKLWRIPLSGGRTIGAPEY---CHANF--------TKYFSDEF 147
I + L + ++ I KL ++ + GG PEY C +++ D
Sbjct: 148 IHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHD-- 205
Query: 148 WSDREFSRVFEGKRPCYFNTGVMVMDLVRWREGDYTRKIEKWM-RIQKERRIYELGSLPP 206
W+D+E + + + + MV LV E DY RK KW+ +I++ Y+ G+L
Sbjct: 206 WNDKEIEVL---NKHLFLTSKPMVY-LVNLSEKDYIRKKNKWLIKIKEWVDKYDPGAL-- 259
Query: 207 FLLVFGGDVE 216
++ F G +E
Sbjct: 260 -VIPFSGALE 268
>pdb|2RRE|A Chain A, Structure And Function Of The N-Terminal Nucleolin Binding
Domain Of Nuclear Valocine Containing Protein Like 2
(Nvl2) Harboring A Nucleolar Localization Signal
Length = 78
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 164 YFNTGVMVMDLVRWREGDYTRKIEKWMRIQKER 196
Y +TG++ DL R DY R+ RIQ E+
Sbjct: 33 YVDTGILASDLQRLYSVDYGRRKRNAFRIQVEK 65
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 26 ENVFFHFIAAESSPANTNDLAQTVRS-----AFPYLSFQVYLFREKFVTGLISSSIRRAL 80
+N F + AE + + + T +S + L+ +++L RE+ G + + +
Sbjct: 167 QNGCFDLLNAEGTRKVSETIPNTKQSLLYLLSIASLNLELFLQREELSDGPMLAYFQECF 226
Query: 81 DSPLNYARIYLADILEPSIKRVIYLDSDVIVVDDI 115
NYA YL L +KR + L + V+D+I
Sbjct: 227 FEDFNYAPEYLILALVKEMKRFVLLIENRTVIDEI 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,608,003
Number of Sequences: 62578
Number of extensions: 425603
Number of successful extensions: 682
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 12
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)