Query 023262
Match_columns 285
No_of_seqs 218 out of 1382
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 6.1E-51 1.3E-55 366.2 15.6 229 7-239 2-231 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 1.1E-21 2.3E-26 151.3 6.4 86 13-99 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 9.3E-22 2E-26 151.6 5.4 86 135-220 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 3.5E-14 7.5E-19 128.4 5.9 95 5-100 119-213 (243)
5 COG4095 Uncharacterized conser 99.2 8.2E-11 1.8E-15 90.1 7.7 81 14-95 5-85 (89)
6 COG4095 Uncharacterized conser 99.1 4.4E-11 9.6E-16 91.6 4.3 83 133-218 5-87 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 1.6E-07 3.6E-12 84.4 15.2 192 14-210 4-214 (220)
8 PF04193 PQ-loop: PQ loop repe 98.3 2.5E-06 5.4E-11 61.1 6.2 56 16-71 4-59 (61)
9 KOG3211 Predicted endoplasmic 98.1 2.3E-05 5E-10 69.4 9.2 196 12-219 29-226 (230)
10 PF04193 PQ-loop: PQ loop repe 97.8 2.2E-05 4.8E-10 56.1 3.9 56 134-192 3-58 (61)
11 KOG2913 Predicted membrane pro 96.5 0.045 9.8E-07 50.6 12.0 58 12-69 7-64 (260)
12 TIGR00951 2A43 Lysosomal Cysti 95.2 0.015 3.3E-07 52.3 3.0 50 133-185 4-53 (220)
13 PRK01021 lpxB lipid-A-disaccha 94.9 0.43 9.3E-06 49.1 12.7 184 17-210 13-213 (608)
14 smart00679 CTNS Repeated motif 94.9 0.027 5.8E-07 34.9 2.6 27 28-54 2-28 (32)
15 PHA02246 hypothetical protein 94.9 1.2 2.5E-05 38.3 13.2 171 16-208 7-185 (192)
16 smart00679 CTNS Repeated motif 91.5 0.074 1.6E-06 32.8 0.6 29 150-178 2-30 (32)
17 PF03650 MPC: Uncharacterised 90.2 0.12 2.5E-06 42.4 0.7 77 139-220 22-100 (119)
18 PHA02246 hypothetical protein 89.0 3 6.6E-05 35.8 8.4 63 20-82 115-177 (192)
19 PF10688 Imp-YgjV: Bacterial i 88.7 8.5 0.00018 33.0 11.3 125 51-209 30-154 (163)
20 PF03650 MPC: Uncharacterised 82.6 0.45 9.8E-06 39.0 0.3 59 39-98 39-99 (119)
21 KOG1589 Uncharacterized conser 79.6 0.47 1E-05 38.2 -0.5 60 161-220 43-104 (118)
22 PF07578 LAB_N: Lipid A Biosyn 79.0 4.1 8.8E-05 30.5 4.3 61 20-83 4-65 (72)
23 KOG1589 Uncharacterized conser 75.2 1.5 3.1E-05 35.4 1.1 63 27-95 36-100 (118)
24 KOG3145 Cystine transporter Cy 72.7 8.2 0.00018 36.7 5.5 41 8-48 118-158 (372)
25 KOG3211 Predicted endoplasmic 69.0 10 0.00022 34.2 5.0 73 24-96 152-224 (230)
26 KOG2489 Transmembrane protein 68.8 82 0.0018 32.1 11.8 188 21-223 328-557 (592)
27 KOG2913 Predicted membrane pro 67.8 3.8 8.3E-05 38.0 2.3 48 16-66 168-215 (260)
28 PF10688 Imp-YgjV: Bacterial i 62.2 6.5 0.00014 33.7 2.5 36 52-88 119-154 (163)
29 PF07578 LAB_N: Lipid A Biosyn 61.9 6 0.00013 29.6 1.9 44 161-204 22-65 (72)
30 COG3952 Predicted membrane pro 61.2 5.2 0.00011 32.2 1.6 58 159-216 48-105 (113)
31 KOG2927 Membrane component of 51.9 55 0.0012 31.8 7.0 26 175-202 240-265 (372)
32 KOG2532 Permease of the major 50.7 64 0.0014 32.2 7.8 148 4-154 255-413 (466)
33 PF09586 YfhO: Bacterial membr 49.0 3.2E+02 0.0069 29.0 13.1 82 15-100 220-303 (843)
34 COG3952 Predicted membrane pro 49.0 78 0.0017 25.5 6.4 47 46-93 56-103 (113)
35 PF10277 Frag1: Frag1/DRAM/Sfk 48.7 1.7E+02 0.0037 24.9 12.0 65 6-70 49-115 (215)
36 KOG3106 ER lumen protein retai 44.5 27 0.00059 31.1 3.5 59 149-212 129-191 (212)
37 PRK05771 V-type ATP synthase s 43.2 4E+02 0.0087 27.6 12.5 41 26-70 325-365 (646)
38 PRK01021 lpxB lipid-A-disaccha 38.5 2.2E+02 0.0047 29.8 9.4 73 17-92 143-216 (608)
39 PF15102 TMEM154: TMEM154 prot 35.8 46 0.00099 28.3 3.4 30 192-221 59-88 (146)
40 PF05602 CLPTM1: Cleft lip and 35.0 62 0.0013 32.0 4.8 72 16-87 304-375 (438)
41 TIGR00341 conserved hypothetic 34.0 96 0.0021 29.8 5.7 51 47-97 113-163 (325)
42 PF01102 Glycophorin_A: Glycop 33.4 13 0.00029 30.6 -0.1 19 204-222 78-96 (122)
43 COG5196 ERD2 ER lumen protein 32.8 3.5E+02 0.0075 23.9 8.4 69 149-217 130-202 (214)
44 KOG2325 Predicted transporter/ 32.6 1.3E+02 0.0027 30.6 6.6 21 198-218 211-231 (488)
45 PF05297 Herpes_LMP1: Herpesvi 31.4 16 0.00034 34.6 0.0 62 158-221 128-190 (381)
46 KOG3618 Adenylyl cyclase [Gene 31.0 3.9E+02 0.0084 29.2 9.8 30 52-81 87-117 (1318)
47 PRK11387 S-methylmethionine tr 26.6 2.6E+02 0.0056 27.5 7.6 19 21-39 374-392 (471)
48 PF13965 SID-1_RNA_chan: dsRNA 26.5 7.4E+02 0.016 25.7 13.2 47 132-184 453-499 (570)
49 PF01102 Glycophorin_A: Glycop 25.7 1E+02 0.0022 25.4 3.8 40 5-47 62-101 (122)
50 TIGR00341 conserved hypothetic 25.0 1.2E+02 0.0026 29.1 4.7 51 47-98 243-293 (325)
51 PF01372 Melittin: Melittin; 23.8 1.2E+02 0.0027 18.0 2.8 17 25-41 8-24 (26)
52 KOG2290 Rhomboid family protei 21.6 7.1E+02 0.015 25.4 9.3 55 29-95 531-587 (652)
53 PLN02324 triacylglycerol lipas 21.0 40 0.00086 33.5 0.6 20 259-278 394-413 (415)
54 PF05875 Ceramidase: Ceramidas 20.7 6.3E+02 0.014 22.8 11.7 54 13-67 24-78 (262)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=6.1e-51 Score=366.16 Aligned_cols=229 Identities=49% Similarity=0.892 Sum_probs=200.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcC-CceeEEeehhHHHHHHH
Q 023262 7 HDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKK-DAFLLITINAFGCVIET 85 (285)
Q Consensus 7 ~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~-d~~~li~~N~~G~~l~~ 85 (285)
++....++|.+|+++++.+|++|+|+++||+|+||+|++|+.||+++++||++|+.||.+++ |. .++.+|.+|+++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-LLITINGIGLVIET 80 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-EEEEEehhcHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999888 65 68999999999999
Q ss_pred HHHHhHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhheecchhHHHHhhhhhHHHHHHHHhhcccchhheeeecCccc
Q 023262 86 IYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVE 165 (285)
Q Consensus 86 ~y~~vf~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~ 165 (285)
+|+..|+.|+++|+... .....+.++++++++++....++++.|.+.+|++|.+++++||+|||..+|+|||+||+|
T Consensus 81 ~Yi~~f~~ya~~k~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVK---IVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHheecCchheeE---eeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 99999999999876221 222233456666677778888888788999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhheeEEcCCccchhcccccCCCccccceec
Q 023262 166 FMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRVVVEDVNKVPEHTVDVVKL 239 (285)
Q Consensus 166 ~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~~iy~~~~~~~~~~~~~~~~~~~~~~~~ 239 (285)
+||++++++.++++..|++||++++|.|+.+||++|++++++||++|++|++++.+.....++..|++.+..+.
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~~~~~~~~~~~~~~~~~~ 231 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKIVPPKQNKKDVVVDEVLL 231 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccccccccccCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999988754433334445555555553
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=1.1e-21 Score=151.26 Aligned_cols=86 Identities=34% Similarity=0.715 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHh
Q 023262 13 AFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 92 (285)
Q Consensus 13 ~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~ 92 (285)
++|++|.++++++++||+|++++++|+||++++|+.|++++++||.+|+.||++++|+ +++.+|++|++++++|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheE
Confidence 4789999999999999999999999999999999999999999999999999999998 589999999999999999999
Q ss_pred hcCCchh
Q 023262 93 TFAPKQA 99 (285)
Q Consensus 93 ~y~~~k~ 99 (285)
+|+++|+
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998864
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=9.3e-22 Score=151.60 Aligned_cols=86 Identities=33% Similarity=0.689 Sum_probs=83.9
Q ss_pred hhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhheeE
Q 023262 135 LLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAI 214 (285)
Q Consensus 135 i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~~i 214 (285)
++|++|.+.++++|+||++++++++|+|+++++|+.++++.++||.+|+.||++++|++++++|++|++++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcc
Q 023262 215 YRNYRR 220 (285)
Q Consensus 215 y~~~~~ 220 (285)
|+++||
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 999875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.48 E-value=3.5e-14 Score=128.43 Aligned_cols=95 Identities=23% Similarity=0.440 Sum_probs=86.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHH
Q 023262 5 STHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIE 84 (285)
Q Consensus 5 ~~~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~ 84 (285)
++++.....+|+++.+++++||.||+-.+++++|+||+|.++.....+.++++..|+.||++.+|.+ +..+|++|++++
T Consensus 119 ~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~-IaipN~iG~~l~ 197 (243)
T KOG1623|consen 119 HDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFF-IAIPNVLGFLLG 197 (243)
T ss_pred CCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeE-EEcccHHHHHHH
Confidence 5666667899999999999999999999999999999999976667799999999999999999987 678999999999
Q ss_pred HHHHHhHhhcCCchhH
Q 023262 85 TIYLALYITFAPKQAR 100 (285)
Q Consensus 85 ~~y~~vf~~y~~~k~r 100 (285)
++++.+|++|.+++.+
T Consensus 198 ~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 198 LIQLILYFKYPKTTEK 213 (243)
T ss_pred HHHHHHhhhcCCCccc
Confidence 9999999999877643
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=8.2e-11 Score=90.11 Aligned_cols=81 Identities=20% Similarity=0.446 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhh
Q 023262 14 FGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYIT 93 (285)
Q Consensus 14 ~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~ 93 (285)
.-.+|.++++...++-+||..+++|+|+++++|+..|+.....+.+|+.||++.+|. |++..|.++..++..-++...+
T Consensus 5 ~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~l-Pii~aN~i~~il~liIl~~kI~ 83 (89)
T COG4095 5 IEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDL-PIIIANIISFILSLIILFYKIK 83 (89)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHHHHH
Confidence 345677777777778999999999999999999999999999999999999999995 8999999999999888777776
Q ss_pred cC
Q 023262 94 FA 95 (285)
Q Consensus 94 y~ 95 (285)
|.
T Consensus 84 ~~ 85 (89)
T COG4095 84 YI 85 (89)
T ss_pred HH
Confidence 63
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4.4e-11 Score=91.59 Aligned_cols=83 Identities=17% Similarity=0.467 Sum_probs=74.8
Q ss_pred HHhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhhe
Q 023262 133 LRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILY 212 (285)
Q Consensus 133 ~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~ 212 (285)
.+..|++|..++.+ +.+||+.+++|+||++++++++.........+|++||++++|..+.+.|.+++.++++-+...
T Consensus 5 ~~viG~ia~ilttf---~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTF---AFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 46789988888886 456999999999999999999999999999999999999999999999999999999888777
Q ss_pred eEEcCC
Q 023262 213 AIYRNY 218 (285)
Q Consensus 213 ~iy~~~ 218 (285)
..|..+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 766543
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.81 E-value=1.6e-07 Score=84.44 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHh--------hhcCCceeEEee---hhHH--
Q 023262 14 FGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYA--------MMKKDAFLLITI---NAFG-- 80 (285)
Q Consensus 14 ~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG--------~l~~d~~~li~~---N~~G-- 80 (285)
-..+|.+..++-..+.+||+++++|+||++++|+..+..-+.....|..|- ...+-++. -.. |-+-
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~-~~~v~~edl~~a 82 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLS-SPGVTQNDVFFT 82 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccc-cCCCcHHHHHHH
Confidence 356777777777788999999999999999999999999999999999993 33222221 111 2232
Q ss_pred ---HHHHHHHHHhHhhcCCchhHHHH--HHHHHHHHHHHHHHHHhhhhheecchhHHHHhhhhhHHHHHHHHhhcccchh
Q 023262 81 ---CVIETIYLALYITFAPKQARLYT--LRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIM 155 (285)
Q Consensus 81 ---~~l~~~y~~vf~~y~~~k~r~~~--~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~i~G~i~~v~si~~~~sPL~~i 155 (285)
+++.+....-+.+|.+..+|... .........+.++. ............+....++.+-..+++ .+-+||+
T Consensus 83 i~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~l~~iki~is~---ikyiPQi 158 (220)
T TIGR00951 83 LHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFAT-LLVALLSPITPLAFVTMLSYIKVAVTL---VKYFPQA 158 (220)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHH---HHHhHHH
Confidence 22222222222333332222111 11111100111110 111111111122344455555555555 4778999
Q ss_pred heeeecCcccccchHHHHHHHHHHHHHHHhhhc-ccCeeEEechhHHHHHHHHHhh
Q 023262 156 RLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF-LKDVYVAVPNVLGFIFGVVQMI 210 (285)
Q Consensus 156 ~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll-~~D~~i~ipN~iG~~l~~~ql~ 210 (285)
+...|.||++++|....+..+.++..-.+-.+. .+|...+..-.++++++.+-+.
T Consensus 159 ~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~ 214 (220)
T TIGR00951 159 ATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAA 214 (220)
T ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877777765 4777777778888888775443
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.27 E-value=2.5e-06 Score=61.09 Aligned_cols=56 Identities=25% Similarity=0.530 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCce
Q 023262 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAF 71 (285)
Q Consensus 16 ~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~ 71 (285)
++|.+..++..++.+||+++.+|+||++++|...+...+.+..+|+.|+++.++++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56667777777889999999999999999999999999999999999999888754
No 9
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.07 E-value=2.3e-05 Score=69.37 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHH-HHHHh
Q 023262 12 FAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIET-IYLAL 90 (285)
Q Consensus 12 ~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~-~y~~v 90 (285)
.+.+.+|..+.....+--+||+.+|+..||++|+|...+...++.-..-+.|.+-.+-+|. -.--.+=++++. +.+..
T Consensus 29 llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFs-s~gE~~fLl~Q~vili~~ 107 (230)
T KOG3211|consen 29 LLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFS-SYGEYPFLLLQAVILILC 107 (230)
T ss_pred HHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCch-hHHHHHHHHHHHHHHHHH
Confidence 3456666666666666699999999999999999999999999999999999988876653 222223333333 33344
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhheecchhHHHHhhhhhHHHHHHHHhhcccchhheeeecCcccccchH
Q 023262 91 YITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFY 170 (285)
Q Consensus 91 f~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~ 170 (285)
.+.|+-.... ..+.+.. .+ .+....+ ... ....+.-...+...-+.-.+-+.|+..-.|+|++..+++.
T Consensus 108 if~f~~~~~~--~v~~l~~-----~~-~v~~~~~-sk~--~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~i 176 (230)
T KOG3211|consen 108 IFHFSGQTVT--VVQFLGY-----IA-LVVSVLA-SKA--LPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLI 176 (230)
T ss_pred HHHhccceee--hhhHHHH-----HH-HHHHHHH-Hhh--hhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHH
Confidence 4445411000 0011111 00 0000011 110 1122222222222222336889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc-ccCeeEEechhHHHHHHHHHhhheeEEcCCc
Q 023262 171 LSLFLTLNAVMWFFYGLF-LKDVYVAVPNVLGFIFGVVQMILYAIYRNYR 219 (285)
Q Consensus 171 ~~~~~~~n~~lW~~YGll-~~D~~i~ipN~iG~~l~~~ql~l~~iy~~~~ 219 (285)
..+.++-.+..-.+|.+. ++|..++..-++..+++.+-.+-.++|++.+
T Consensus 177 t~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 177 TVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred HHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 999999999999999999 4778777777777777776666666666543
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=97.82 E-value=2.2e-05 Score=56.13 Aligned_cols=56 Identities=16% Similarity=0.393 Sum_probs=48.4
Q ss_pred HhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCe
Q 023262 134 RLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDV 192 (285)
Q Consensus 134 ~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~ 192 (285)
.++|+++.++.+ .+.+||+++.+|+|+++++++.+....++++.+|++|+++.++.
T Consensus 3 ~~~g~i~~~~~~---~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWI---ISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356666666655 47889999999999999999999999999999999999997654
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.50 E-value=0.045 Score=50.63 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCC
Q 023262 12 FAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKD 69 (285)
Q Consensus 12 ~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d 69 (285)
+.-.++|++.+++-..+-.||+....|+|+++++|+.+.+.-+.....=+.|..+.+-
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 4445667777777777899999999999999999999988888777777777766653
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.20 E-value=0.015 Score=52.33 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=43.7
Q ss_pred HHhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHh
Q 023262 133 LRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFY 185 (285)
Q Consensus 133 ~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~Y 185 (285)
.+++|+...+.... +.+||+.+.+|+||++++++......+++...|..|
T Consensus 4 S~~lG~~~~~~~~~---~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSI---SFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHH---HHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 35677777766664 678999999999999999999999999999999999
No 13
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.89 E-value=0.43 Score=49.12 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHH-HHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhhcC
Q 023262 17 LGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFA 95 (285)
Q Consensus 17 lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v-~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~y~ 95 (285)
+|.+..++...--+-|-..--|+| ++.-|.-|+ ..+..+.+=+.||++.+|. +++....+|.++..=-+.+- ..
T Consensus 13 ~G~~~q~~F~~rf~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~~~~~~~-~~~~~q~~~~~iy~rNl~l~--~~ 87 (608)
T PRK01021 13 LGLFANLFFGSAFCIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHGFIQSQF-PIALLHSFNLIIYFRNLNIA--SS 87 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEecccceEEEeehhhhc--cc
Confidence 444444444333444443333333 444566666 8899999999999988774 46655555543321111111 11
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-HHhhhhheecch---------------hHHHHhhhhhHHHHHHHHhhcccchhheee
Q 023262 96 PKQARLYTLRLLLLLNFGGFGS-ILLLSHFLAKGS---------------AARLRLLGWVCVVFSVSVFAAPLSIMRLVV 159 (285)
Q Consensus 96 ~~k~r~~~~~~~~~~~~~~~~~-i~l~t~~~~~~~---------------~~~~~i~G~i~~v~si~~~~sPL~~i~~Vi 159 (285)
.+.-.+..-.++...+..+++ +.+.+++..... +.--.++|+++-++-.. -.+-|-. .-
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~---Rf~~Qw~-~s 162 (608)
T PRK01021 88 -RPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSL---RFFIQWF-YL 162 (608)
T ss_pred -ccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHH---HHHHHHH-HH
Confidence 111111110011111111111 111222211111 01123455555443222 1122211 12
Q ss_pred ecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhh
Q 023262 160 RTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMI 210 (285)
Q Consensus 160 rtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~ 210 (285)
+.+.-+.+|..--..+++++.+=++|++..+|...++..+.|++.-+--+.
T Consensus 163 e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~ 213 (608)
T PRK01021 163 EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLR 213 (608)
T ss_pred HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHH
Confidence 344556789888999999999999999999999999999999986665543
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.88 E-value=0.027 Score=34.86 Aligned_cols=27 Identities=30% Similarity=0.451 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHhcCcCCccchhHHHHH
Q 023262 28 APMPTFYRVCKKKSTEGFQSLPYVVAL 54 (285)
Q Consensus 28 SPlp~i~~I~K~Kst~~~s~~p~v~~l 54 (285)
+-+||+++++|+||++++|+..+.+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 578999999999999999877665443
No 15
>PHA02246 hypothetical protein
Probab=94.87 E-value=1.2 Score=38.30 Aligned_cols=171 Identities=18% Similarity=0.305 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHH--HHHHHhHhh
Q 023262 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIE--TIYLALYIT 93 (285)
Q Consensus 16 ~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~--~~y~~vf~~ 93 (285)
++...-+++......|+...+.|.|++.|+|- .|+-...-..+-..|..+..|.. .+-.=.+|..+. +..+.+ ..
T Consensus 7 ~~s~~yailit~gYipgL~slvk~~nv~GvS~-~FWYLi~~tvgiSfyNlL~T~~~-~fqi~svg~nl~lgivcLlv-~~ 83 (192)
T PHA02246 7 YLSILYAILITVGYIPGLVALVKAESVKGVSN-YFWYLIVATVGISFYNLLLTDAS-VFQIVSVGLNLTLGIVCLLV-AS 83 (192)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhcccccHHH-HHHHHHHHHHHHHHHHHHhcCCc-eEEEeeeehhhhhhhhheee-eh
Confidence 45555667777789999999999999999854 45555566677788998766542 233333444443 332221 12
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhhhhheecch-hHHHHhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHH
Q 023262 94 FAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGS-AARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLS 172 (285)
Q Consensus 94 y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~-~~~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~ 172 (285)
|+++ .. ....+.. .|. +++ + ..++ ....+.+|-. ++ ..+-.+|+.+-+|||++|+.+.+++
T Consensus 84 ~rkk-d~-f~~~fii-----ifS--Lll--f-ll~~~~evtQtVat~----tI--iLaYi~QIIqfyKTK~SEg~n~~l~ 145 (192)
T PHA02246 84 YRKK-DY-FSIPFII-----VFS--LLL--F-LLSDFTALTQTVATI----TI--ILAYVTQITTFYKTKSAEGTNRFLF 145 (192)
T ss_pred hhcc-cc-ccchHHH-----HHH--HHH--H-HHhhhHHHHHHHHHH----HH--HHHHHHHHHHHhhhcccCCCChhHH
Confidence 3222 11 1111110 111 111 1 1111 1222333322 22 2356789999999999999998777
Q ss_pred HHHHHHHHHHHHhhhcccC--eeEEec---hhHHHHHHHHH
Q 023262 173 LFLTLNAVMWFFYGLFLKD--VYVAVP---NVLGFIFGVVQ 208 (285)
Q Consensus 173 ~~~~~n~~lW~~YGll~~D--~~i~ip---N~iG~~l~~~q 208 (285)
+...+.-. -+.......+ .++++. |.+=.+.+..|
T Consensus 146 lii~~GL~-~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 146 LIIGLGLA-SLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred HHHHHHHH-HHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 65544433 2344444433 455554 55555555555
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.50 E-value=0.074 Score=32.80 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=24.4
Q ss_pred cccchhheeeecCcccccchHHHHHHHHH
Q 023262 150 APLSIMRLVVRTKSVEFMPFYLSLFLTLN 178 (285)
Q Consensus 150 sPL~~i~~VirtKs~~~~p~~~~~~~~~n 178 (285)
+.+||+.+++|+|+++++++.+.+..+..
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~G 30 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLLG 30 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHhc
Confidence 56899999999999999998877765543
No 17
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=90.16 E-value=0.12 Score=42.40 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcc--cCeeEEechhHHHHHHHHHhhheeEEc
Q 023262 139 VCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVPNVLGFIFGVVQMILYAIYR 216 (285)
Q Consensus 139 i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~--~D~~i~ipN~iG~~l~~~ql~l~~iy~ 216 (285)
.|.++.-++-++++.++ +|..|.++..+..+..+.+.+|.-|++.+ +|+.++..|+.-...+.+|+.=++.|.
T Consensus 22 WaP~~kWgl~iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~ 96 (119)
T PF03650_consen 22 WAPVAKWGLPIAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQ 96 (119)
T ss_pred ehhheeheeeeeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333444443 58999999999999999999999999997 788887789999999999988777666
Q ss_pred CCcc
Q 023262 217 NYRR 220 (285)
Q Consensus 217 ~~~~ 220 (285)
..++
T Consensus 97 ~~~~ 100 (119)
T PF03650_consen 97 YSQK 100 (119)
T ss_pred hhcC
Confidence 5433
No 18
>PHA02246 hypothetical protein
Probab=88.98 E-value=3 Score=35.83 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHH
Q 023262 20 IVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCV 82 (285)
Q Consensus 20 i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~ 82 (285)
++++...++.+||+.+-+|+|++||.|+.-|+.....-.+-..-=.+++-+.-++++-...++
T Consensus 115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~i 177 (192)
T PHA02246 115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHH
Confidence 455566778999999999999999999887775444333322222344433334444444443
No 19
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=88.74 E-value=8.5 Score=33.01 Aligned_cols=125 Identities=11% Similarity=0.204 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhheecchh
Q 023262 51 VVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSA 130 (285)
Q Consensus 51 v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~ 130 (285)
......|.++...-.+.+.+ +-+.+..++..-..+..++.+ +... .. ...+.++.+.... +
T Consensus 30 ~~~~~~~~~~~ihf~LLGa~-----taa~~~~ls~~R~~~s~~~~~---~~v~--~~------Fi~~~~~~~~~~~---~ 90 (163)
T PF10688_consen 30 LLQAISCLLFAIHFALLGAW-----TAALSMLLSAVRNFVSIRTRS---RWVM--AV------FIALSLVMGLFTW---Q 90 (163)
T ss_pred HHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHHHHhCC---HHHH--HH------HHHHHHHHHHHHH---h
Confidence 45566677777777677764 356677777777777666653 2111 11 0111111122211 1
Q ss_pred HHHHhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHh
Q 023262 131 ARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQM 209 (285)
Q Consensus 131 ~~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql 209 (285)
.-.+.++.+++++...-.. . .+.+. |=+..++++.+|..|+++.+++...+-|+.....+.+.+
T Consensus 91 g~~~~l~~~as~~~t~a~f----------~---~~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 91 GWIELLPYAASVLGTIALF----------M---LDGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred hHHHHHHHHHHHHHHHHHH----------h---cCchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 3456677766665543211 1 12222 335789999999999999999998888888887776653
No 20
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=82.58 E-value=0.45 Score=38.97 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=50.4
Q ss_pred hcCcCCccchhHHHHHHHHHHHHHHhhhcC--CceeEEeehhHHHHHHHHHHHhHhhcCCch
Q 023262 39 KKSTEGFQSLPYVVALFSAMLWIYYAMMKK--DAFLLITINAFGCVIETIYLALYITFAPKQ 98 (285)
Q Consensus 39 ~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~--d~~~li~~N~~G~~l~~~y~~vf~~y~~~k 98 (285)
+|..|.+|..+-....+.+.+|+.|++.+. |+ .++.+|++-...+++++.=++.|....
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny-~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNY-LLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999998664 65 479999999999999998777775433
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.60 E-value=0.47 Score=38.17 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=52.2
Q ss_pred cCcccccchHHHHHHHHHHHHHHHhhhcc--cCeeEEechhHHHHHHHHHhhheeEEcCCcc
Q 023262 161 TKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVPNVLGFIFGVVQMILYAIYRNYRR 220 (285)
Q Consensus 161 tKs~~~~p~~~~~~~~~n~~lW~~YGll~--~D~~i~ipN~iG~~l~~~ql~l~~iy~~~~~ 220 (285)
.|..|.++..-.++.+..+++|+-|.+.+ +|+++...|..-.+-+..||.=++.|....+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999997 8899988999999999999998888854333
No 22
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=79.00 E-value=4.1 Score=30.52 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=37.9
Q ss_pred HHHHHHHhccHHHHHHHHHhcCcCCccchhHH-HHHHHHHHHHHHhhhcCCceeEEeehhHHHHH
Q 023262 20 IVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVI 83 (285)
Q Consensus 20 i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v-~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l 83 (285)
+..++...--+-|-..-.|+|.+ .-|..|+ +.+..+.+=+.||+..+|+. .+....+|.++
T Consensus 4 ~gq~lF~~Rf~~QW~~SEk~k~s--v~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 4 IGQLLFSSRFIVQWIYSEKAKKS--VVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChHH
Confidence 33444444445555555555543 3455555 88999999999999999973 44445555443
No 23
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.21 E-value=1.5 Score=35.43 Aligned_cols=63 Identities=14% Similarity=0.309 Sum_probs=53.1
Q ss_pred hccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhc--CCceeEEeehhHHHHHHHHHHHhHhhcC
Q 023262 27 LAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMK--KDAFLLITINAFGCVIETIYLALYITFA 95 (285)
Q Consensus 27 lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~--~d~~~li~~N~~G~~l~~~y~~vf~~y~ 95 (285)
++.+.++ .|..|.+|.......+...+.|..|.+.+ +|+. ++.+|.+-.+.+++++.=.+.|.
T Consensus 36 ~AglaD~-----arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~-LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 36 IAGLADL-----ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYS-LFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred eecHHhh-----cCChHHcChhhhHHHHHhhhhheeeeEEEeccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 57899999999999999999999999865 4765 79999999999999998888883
No 24
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=72.69 E-value=8.2 Score=36.66 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccch
Q 023262 8 DPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSL 48 (285)
Q Consensus 8 ~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~ 48 (285)
......-.++|.+.-+.-..|--||++.=+|+||+.++|.-
T Consensus 118 ~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfD 158 (372)
T KOG3145|consen 118 IALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFD 158 (372)
T ss_pred hhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccc
Confidence 34445556666665555566788999999999999998754
No 25
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=69.04 E-value=10 Score=34.21 Aligned_cols=73 Identities=11% Similarity=0.195 Sum_probs=57.7
Q ss_pred HHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhhcCC
Q 023262 24 IVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAP 96 (285)
Q Consensus 24 ~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~y~~ 96 (285)
....|-++|+..-+|+|++|..|.+...+.+..|..=..|.....+.+.+...-++..+++..-..-+++|.+
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3446788999999999999999999999999999999999987665555666677777777766665666543
No 26
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=68.83 E-value=82 Score=32.10 Aligned_cols=188 Identities=18% Similarity=0.222 Sum_probs=112.6
Q ss_pred HHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHH-----------
Q 023262 21 VSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLA----------- 89 (285)
Q Consensus 21 ~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~----------- 89 (285)
-++.=|++-=.++.=+.|+||-+|+|.-..+..++++..=.+|=+=.+-.+.|.++-.+|.++++.=+-
T Consensus 328 H~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g 407 (592)
T KOG2489|consen 328 HSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSG 407 (592)
T ss_pred HHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEeccc
Confidence 344445555566667889999999999999999999998888875554446688889999988865421
Q ss_pred -hH-----------hhcCCchhHHH---HHHHHHHHHHHHHHHHH---hhhhhee-cchhHHHHhhhhhHHHHHHHHhhc
Q 023262 90 -LY-----------ITFAPKQARLY---TLRLLLLLNFGGFGSIL---LLSHFLA-KGSAARLRLLGWVCVVFSVSVFAA 150 (285)
Q Consensus 90 -vf-----------~~y~~~k~r~~---~~~~~~~~~~~~~~~i~---l~t~~~~-~~~~~~~~i~G~i~~v~si~~~~s 150 (285)
++ -.|+.++.+.. ..|.+..+ .+-+.+ +++.... +.+ -..-++..+.+.+-.+=|.-
T Consensus 408 ~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~---L~PL~vg~aVYSLlY~~hKs-WYSWvLn~l~~~vy~FGFi~ 483 (592)
T KOG2489|consen 408 LIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYL---LFPLLVGGAVYSLLYVEHKS-WYSWVLNSLYNGVYAFGFIF 483 (592)
T ss_pred ccccccccccccccccccccchhHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccccc-HHHHHHHHHHhHHHHHHHHH
Confidence 11 12322222211 12322221 222222 2222222 222 33334433333333333445
Q ss_pred ccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcc------------cCeeEEechhHHHHHHHHHhhheeEEcCC
Q 023262 151 PLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFL------------KDVYVAVPNVLGFIFGVVQMILYAIYRNY 218 (285)
Q Consensus 151 PL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~------------~D~~i~ipN~iG~~l~~~ql~l~~iy~~~ 218 (285)
-+||+--..|-||++.+|..+.---++|.++==++++.+ +|+.- +++|--.|+||-.
T Consensus 484 M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF-----------lIYLYQRWlYpVD 552 (592)
T KOG2489|consen 484 MLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF-----------LIYLYQRWLYPVD 552 (592)
T ss_pred hChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE-----------EeeehhhhccccC
Confidence 578998899999999999999988888887655555443 44322 2345555788876
Q ss_pred ccchh
Q 023262 219 RRVVV 223 (285)
Q Consensus 219 ~~~~~ 223 (285)
+.+..
T Consensus 553 ~tRvN 557 (592)
T KOG2489|consen 553 KTRVN 557 (592)
T ss_pred hhhhh
Confidence 66663
No 27
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=67.84 E-value=3.8 Score=37.97 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhh
Q 023262 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMM 66 (285)
Q Consensus 16 ~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l 66 (285)
++|.+.+++-..+.+||+..-+|+|+++++++..|... +..=..|+.-
T Consensus 168 ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~---~~~n~~y~~s 215 (260)
T KOG2913|consen 168 ILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFN---SLGNTTYILS 215 (260)
T ss_pred HHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHH---Hccccccccc
Confidence 35556667777889999999999999999988665543 3334456543
No 28
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=62.23 E-value=6.5 Score=33.71 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHH
Q 023262 52 VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYL 88 (285)
Q Consensus 52 ~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~ 88 (285)
..++++.+|+.|+++.+++. ....|.+..+.+.+.+
T Consensus 119 ~~l~~~~~w~~~n~~igS~~-g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 119 LMLVGTLCWLIYNILIGSWG-GTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHH
Confidence 58899999999999999974 5677888877776554
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=61.87 E-value=6 Score=29.61 Aligned_cols=44 Identities=11% Similarity=0.310 Sum_probs=35.8
Q ss_pred cCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHH
Q 023262 161 TKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIF 204 (285)
Q Consensus 161 tKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l 204 (285)
++.-+.+|..--..+++.+.+=++||+.++|...++-.++|.+.
T Consensus 22 k~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 22 KAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 34445678888899999999999999999999777777777654
No 30
>COG3952 Predicted membrane protein [Function unknown]
Probab=61.15 E-value=5.2 Score=32.15 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=49.2
Q ss_pred eecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhheeEEc
Q 023262 159 VRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYR 216 (285)
Q Consensus 159 irtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~~iy~ 216 (285)
.+.++.+.+|.+---++++.+.+-+.|-+-++|..-++.|+.|++..+.-+-+...-+
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker 105 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKER 105 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3677888899999999999999999999999999888899999998887766654333
No 31
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.92 E-value=55 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhcccCeeEEechhHHH
Q 023262 175 LTLNAVMWFFYGLFLKDVYVAVPNVLGF 202 (285)
Q Consensus 175 ~~~n~~lW~~YGll~~D~~i~ipN~iG~ 202 (285)
.++=++.|++||=- -.+=++||+..=
T Consensus 240 lILF~I~~il~~g~--~g~W~FPNL~eD 265 (372)
T KOG2927|consen 240 LILFGITWILTGGK--HGFWLFPNLTED 265 (372)
T ss_pred HHHHHHHHHHhCCC--CceEeccchhhh
Confidence 34456788888732 234468999754
No 32
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=50.67 E-value=64 Score=32.23 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=81.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhccHHHHHH-HH--HhcCcCCccchhHHHHHHHHHHHHHHhh-hcCCc----eeEEe
Q 023262 4 FSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYR-VC--KKKSTEGFQSLPYVVALFSAMLWIYYAM-MKKDA----FLLIT 75 (285)
Q Consensus 4 ~~~~~~~~~~~g~lg~i~si~m~lSPlp~i~~-I~--K~Kst~~~s~~p~v~~l~n~~lWl~YG~-l~~d~----~~li~ 75 (285)
+.++......+...|.-.++.+++.-+|+..+ +. .-|++|=++.+|++..+.....+..-.= ++.+. ...-.
T Consensus 255 ~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki 334 (466)
T KOG2532|consen 255 LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI 334 (466)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence 34555666777777888888888889998776 22 3456777889999998887776655441 22210 01234
Q ss_pred ehhHHHHHHHHHHHhHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhheec---chhHHHHhhhhhHHHHHHHHhhccc
Q 023262 76 INAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAK---GSAARLRLLGWVCVVFSVSVFAAPL 152 (285)
Q Consensus 76 ~N~~G~~l~~~y~~vf~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~---~~~~~~~i~G~i~~v~si~~~~sPL 152 (285)
-|.++.....+.+.+-- |.++..+...+..++.. . ++......-++..+ .++-...++|..-.+.++..+.+|+
T Consensus 335 fn~i~~~~~ai~l~~l~-~~~~~~~~~a~~~l~~~-~-~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~ 411 (466)
T KOG2532|consen 335 FNTIAFGGPAVFLLVLA-FTSDEHRLLAVILLTIA-I-GLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPL 411 (466)
T ss_pred HHhHHHHHHHHHHHeee-ecCCCcchHHHHHHHHH-H-HHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888777665444 44443332111111110 0 00000000011111 2223345677777777777778886
Q ss_pred ch
Q 023262 153 SI 154 (285)
Q Consensus 153 ~~ 154 (285)
..
T Consensus 412 ~v 413 (466)
T KOG2532|consen 412 LV 413 (466)
T ss_pred he
Confidence 64
No 33
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=49.02 E-value=3.2e+02 Score=29.00 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchh--HHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHh
Q 023262 15 GLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLP--YVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 92 (285)
Q Consensus 15 g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p--~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~ 92 (285)
+++|...+..+ -+|++..+..++.+++-...+ +.....-...=..+|....+..+- .+|....++.++.+.+++
T Consensus 220 ~ilg~~lsa~~---llP~~~~~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~y~g~l~li~~~~~~ 295 (843)
T PF09586_consen 220 SILGVGLSAFL---LLPTILSLLQSKRSGGSFSFSLFYPISYYDILSKLFIGSFDFDEMGS-LPNLYCGLLPLILVILYF 295 (843)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhCCCccCCccccccccchHHHHHHHhccCccccccccc-cccHHHHHHHHHHHHHHH
Confidence 33444444444 579999998888877741111 111111111112233222221111 456665566666666665
Q ss_pred hcCCchhH
Q 023262 93 TFAPKQAR 100 (285)
Q Consensus 93 ~y~~~k~r 100 (285)
...+.++|
T Consensus 296 ~~~~~~~~ 303 (843)
T PF09586_consen 296 FFKKIKKK 303 (843)
T ss_pred HHhhhhhH
Confidence 54433333
No 34
>COG3952 Predicted membrane protein [Function unknown]
Probab=48.97 E-value=78 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=36.9
Q ss_pred cchhHH-HHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhh
Q 023262 46 QSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYIT 93 (285)
Q Consensus 46 s~~p~v-~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~ 93 (285)
-|.+|. +.++.+.+=+.|-+.++|+.- +..|+.|++.++.-+.+...
T Consensus 56 ~P~~FW~~sllGg~l~L~Yfi~~~DpV~-Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 56 IPVLFWYFSLLGGLLLLSYFIRRQDPVF-VLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred chHHHHHHHHHhhHHHHHHHHHhcchHH-HHHHhhhHHHHHHHHHHHHH
Confidence 356666 889999999999999999864 56788888888766655554
No 35
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=48.71 E-value=1.7e+02 Score=24.94 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCc--CCccchhHHHHHHHHHHHHHHhhhcCCc
Q 023262 6 THDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKST--EGFQSLPYVVALFSAMLWIYYAMMKKDA 70 (285)
Q Consensus 6 ~~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst--~~~s~~p~v~~l~n~~lWl~YG~l~~d~ 70 (285)
+..+...+++..-++.+....+.-+-.-++.++..+. +.++...++++++.+..-...+....+.
T Consensus 49 ~~~Pe~~if~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~gl~~~a~~~~~~ 115 (215)
T PF10277_consen 49 AYPPESYIFRFGLNISAFFRLLIVYLRYRYVRQLASKCSRWLNILSLVFGLLSAIGLILLAIFQSTE 115 (215)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 3444455555555555554433333333333222111 1267777888888888888888766543
No 36
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.53 E-value=27 Score=31.11 Aligned_cols=59 Identities=27% Similarity=0.545 Sum_probs=43.0
Q ss_pred hcccchhheeeecCcccccc----hHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhhe
Q 023262 149 AAPLSIMRLVVRTKSVEFMP----FYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILY 212 (285)
Q Consensus 149 ~sPL~~i~~VirtKs~~~~p----~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~ 212 (285)
.|=|||++...|++.+|.+- +.+.+.=++.+.-| +|-....|.+ -.+.++.|++|-++|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~----~~iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFW----DPIAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhccc----cchHHHHHHHHHHHH
Confidence 36689999999999999985 45555666777778 5666667733 334566777887776
No 37
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=43.18 E-value=4e+02 Score=27.64 Aligned_cols=41 Identities=17% Similarity=0.462 Sum_probs=32.0
Q ss_pred HhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCc
Q 023262 26 FLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDA 70 (285)
Q Consensus 26 ~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~ 70 (285)
+..|+..+-+.+-.=+-+++.|.|+++.+ .++.||.+-+|.
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~----f~lfFGmM~gD~ 365 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIF----FPLFFGMMLGDA 365 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHH----HHHHHHHHHHhH
Confidence 34577777777777778889999988654 478999999994
No 38
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.52 E-value=2.2e+02 Score=29.82 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHH-HHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHh
Q 023262 17 LGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 92 (285)
Q Consensus 17 lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v-~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~ 92 (285)
+|.+..++..+=-+-|-..--|+| ++.=|..|+ +.++.+.+=+.|++..+|+. .+..+.+|.++.+=-+.+.+
T Consensus 143 ~G~~~q~~f~~Rf~~Qw~~se~~~--~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv-~i~g~~~g~~~y~rnl~li~ 216 (608)
T PRK01021 143 IGCIGLTIFSLRFFIQWFYLEYNN--QSALPALFWKASLLGGSLALLYFIRTGDPV-NILCYGCGLFPSLANLRIAY 216 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHhHHHHHHHHHHhCCce-EEEccccchhHHHHHHHHHH
Confidence 344433433333344443333333 333355565 88999999999999999997 57789999988766554333
No 39
>PF15102 TMEM154: TMEM154 protein family
Probab=35.77 E-value=46 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=19.9
Q ss_pred eeEEechhHHHHHHHHHhhheeEEcCCccc
Q 023262 192 VYVAVPNVLGFIFGVVQMILYAIYRNYRRV 221 (285)
Q Consensus 192 ~~i~ipN~iG~~l~~~ql~l~~iy~~~~~~ 221 (285)
.+|++|-++++++-+.-+++..+|+|++.+
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 456778777766666667777777665443
No 40
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=34.96 E-value=62 Score=32.01 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHH
Q 023262 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIY 87 (285)
Q Consensus 16 ~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y 87 (285)
++..+-+++=+++-=-++.-++++||.+|+|.-..+.-+++...=++|=+=.+.-+.|.+++++|++++++=
T Consensus 304 ~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 304 VVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhee
Confidence 344556667778888899999999999999999999888888888888655444466889999999999754
No 41
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=34.04 E-value=96 Score=29.77 Aligned_cols=51 Identities=12% Similarity=-0.026 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhhcCCc
Q 023262 47 SLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPK 97 (285)
Q Consensus 47 ~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~y~~~ 97 (285)
...|+..+.-+.+=-.+|++.|+...++.+=.++=+++=+.-.-+-.-..+
T Consensus 113 ~~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d 163 (325)
T TIGR00341 113 NKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIHGFAVNLSVGD 163 (325)
T ss_pred cHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHHHHHHHHHcCc
Confidence 445777777888888999999997655544445545554444444433333
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.37 E-value=13 Score=30.57 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=8.8
Q ss_pred HHHHHhhheeEEcCCccch
Q 023262 204 FGVVQMILYAIYRNYRRVV 222 (285)
Q Consensus 204 l~~~ql~l~~iy~~~~~~~ 222 (285)
++++-++.|++.|++|+..
T Consensus 78 Ig~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3344466666666666544
No 43
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=32.84 E-value=3.5e+02 Score=23.88 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=44.2
Q ss_pred hcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhhe----eEEcC
Q 023262 149 AAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILY----AIYRN 217 (285)
Q Consensus 149 ~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~----~iy~~ 217 (285)
.+=|||+....|...+|++-..-.++.-+--.+.+-|.+...-.-+-=...+.+..|++|-.+| .+|++
T Consensus 130 VAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr 202 (214)
T COG5196 130 VAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYR 202 (214)
T ss_pred HHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhh
Confidence 3557899888899999999877777777777777777777522111111233455566676665 45554
No 44
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=32.64 E-value=1.3e+02 Score=30.64 Aligned_cols=21 Identities=10% Similarity=0.149 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHhhheeEEcCC
Q 023262 198 NVLGFIFGVVQMILYAIYRNY 218 (285)
Q Consensus 198 N~iG~~l~~~ql~l~~iy~~~ 218 (285)
..+..++.++.+++.+.+-++
T Consensus 211 ~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 211 AWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHHHHHHHHHHHHHhheee
Confidence 444455555554444444333
No 45
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.36 E-value=16 Score=34.59 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eeecCcccccchHHHHHHHHHHHHHHHhhhc-ccCeeEEechhHHHHHHHHHhhheeEEcCCccc
Q 023262 158 VVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF-LKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRV 221 (285)
Q Consensus 158 VirtKs~~~~p~~~~~~~~~n~~lW~~YGll-~~D~~i~ipN~iG~~l~~~ql~l~~iy~~~~~~ 221 (285)
.+|+--++.-.+.-++.+|+-.++-++-.++ ...||-++.-..=+++- --++.|+|-...+.
T Consensus 128 lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LF--laiLIWlY~H~~~~ 190 (381)
T PF05297_consen 128 LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLF--LAILIWLYVHDQRH 190 (381)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCC
Confidence 3455555444444444455555555555554 45666655544433322 22344556554443
No 46
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=30.99 E-value=3.9e+02 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhcCCc-eeEEeehhHHH
Q 023262 52 VALFSAMLWIYYAMMKKDA-FLLITINAFGC 81 (285)
Q Consensus 52 ~~l~n~~lWl~YG~l~~d~-~~li~~N~~G~ 81 (285)
-..+.|.+|.+|=.+..-. |...++-.+.+
T Consensus 87 YI~~~~l~W~lYfav~~rs~fi~~~~~slc~ 117 (1318)
T KOG3618|consen 87 YIGFACLLWSLYFAVHMRSRFIVMVAPSLCF 117 (1318)
T ss_pred HHHHHHHHHHHHheeccCceeeeehHHHHHH
Confidence 3456799999997654432 54444444443
No 47
>PRK11387 S-methylmethionine transporter; Provisional
Probab=26.62 E-value=2.6e+02 Score=27.46 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=8.6
Q ss_pred HHHHHHhccHHHHHHHHHh
Q 023262 21 VSFIVFLAPMPTFYRVCKK 39 (285)
Q Consensus 21 ~si~m~lSPlp~i~~I~K~ 39 (285)
..+..|+.+.-...+.+|+
T Consensus 374 ~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 374 AVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455554444444443
No 48
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=26.45 E-value=7.4e+02 Score=25.66 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHH
Q 023262 132 RLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFF 184 (285)
Q Consensus 132 ~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~ 184 (285)
...+++.+ +.++.+|...--.+|- ++-|.+.....+...+..+.|..
T Consensus 453 ~~~~l~i~--i~n~~lY~~fYiimKi----~~~E~i~~~~~~~~~~~~~~W~~ 499 (570)
T PF13965_consen 453 ASFLLAIF--IGNLLLYLFFYIIMKI----RHREKILLKPIIYLVLAFVSWGF 499 (570)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHH----hhcChhHHHHHHHHHHHHHHHHH
Confidence 33444544 4677777766555443 44466677777777788888864
No 49
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.75 E-value=1e+02 Score=25.37 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=18.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccc
Q 023262 5 STHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQS 47 (285)
Q Consensus 5 ~~~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~ 47 (285)
+..+....++|.++.++.+.++++.+ .|-+|+|+..+..+
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~---irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYC---IRRLRKKSSSDVQP 101 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHH---HHHHS---------
T ss_pred cccceeehhHHHHHHHHHHHHHHHHH---HHHHhccCCCCCCC
Confidence 45566778888887777766544433 23334444444444
No 50
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=25.01 E-value=1.2e+02 Score=29.08 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCceeEEeehhHHHHHHHHHHHhHhhcCCch
Q 023262 47 SLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQ 98 (285)
Q Consensus 47 ~~p~v~~l~n~~lWl~YG~l~~d~~~li~~N~~G~~l~~~y~~vf~~y~~~k 98 (285)
..|..+...-+..|--|....+.. .++.+|.+|+.++..-++.++.|+|.+
T Consensus 243 LvPPa~~~Gi~la~g~~~~a~ga~-~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 243 LLPPAVATGILLVISPLPLAVKSL-ILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred hhchHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 344444444455555555555543 367899999999988877777777654
No 51
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.85 E-value=1.2e+02 Score=17.99 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHhccHHHHHHHHHhcC
Q 023262 25 VFLAPMPTFYRVCKKKS 41 (285)
Q Consensus 25 m~lSPlp~i~~I~K~Ks 41 (285)
...+.+|++..++|+|.
T Consensus 8 vla~~LP~lISWIK~kr 24 (26)
T PF01372_consen 8 VLATGLPTLISWIKNKR 24 (26)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHh
Confidence 44578899999999874
No 52
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=21.55 E-value=7.1e+02 Score=25.44 Aligned_cols=55 Identities=7% Similarity=0.287 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhc--CCceeEEeehhHHHHHHHHHHHhHhhcC
Q 023262 29 PMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMK--KDAFLLITINAFGCVIETIYLALYITFA 95 (285)
Q Consensus 29 Plp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~--~d~~~li~~N~~G~~l~~~y~~vf~~y~ 95 (285)
-+-+.++|+++ +...+.-+....+-+.-|++- +| ++..+|.+.+++..++++-|-
T Consensus 531 El~qs~~il~~-------~w~a~~~Lia~~L~L~iGliPWiDN-----~aHlfG~i~GLl~s~~~~PYi 587 (652)
T KOG2290|consen 531 ELFQSWQILER-------PWRAFFHLIATLLVLCIGLIPWIDN-----WAHLFGTIFGLLTSIIFLPYI 587 (652)
T ss_pred HHHhhhHhhhh-------HHHHHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHHHHHhhccc
Confidence 45577777776 222333333344444447542 34 357888888888888877773
No 53
>PLN02324 triacylglycerol lipase
Probab=21.03 E-value=40 Score=33.46 Aligned_cols=20 Identities=15% Similarity=0.521 Sum_probs=15.7
Q ss_pred CchhhhhhhhhhhhhhccCC
Q 023262 259 DKNEHEQANDQHEKARESCN 278 (285)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~ 278 (285)
|+..+|+++|+||||++.|+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~ 413 (415)
T PLN02324 394 GDRSKKKQEEEDEKEENNCK 413 (415)
T ss_pred ccccchhcchhhhccccccC
Confidence 45566777888999999886
No 54
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=20.72 E-value=6.3e+02 Score=22.77 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHH-HHHHHHHHHHHHhhhc
Q 023262 13 AFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMK 67 (285)
Q Consensus 13 ~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v-~~l~n~~lWl~YG~l~ 67 (285)
+....=+++++..++.++-..++.+|++.-..+ .+.++ ..++.-..+...+.++
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~~~~~~~~~~-~l~~~~l~~VGiGS~~FHaTl~ 78 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLARRRGLERRF-ALLYLGLALVGIGSFLFHATLS 78 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccccchh-HHHHHHHHHHHHhHHHHHhChh
Confidence 344555666777777788888888885554443 44444 4444444454444444
Done!