Query 023262
Match_columns 285
No_of_seqs 218 out of 1382
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 17.2 97 0.0033 28.7 3.8 10 179-188 419-428 (511)
2 2nr1_A NR1 M2, M2; receptor, s 11.0 93 0.0032 18.0 1.0 13 177-189 9-21 (27)
3 3tlw_A GLR4197 protein, GLIC; 9.4 5.1E+02 0.017 22.6 6.0 14 79-92 208-221 (321)
4 3qrx_B Melittin; calcium-bindi 7.2 2.6E+02 0.009 15.7 1.9 16 26-41 9-24 (26)
5 4djk_A Probable glutamate/gamm 6.4 1.2E+03 0.041 21.0 7.4 14 26-39 382-395 (511)
6 3bkd_A Transmembrane domain of 5.2 81 0.0028 17.9 -1.0 14 190-203 2-15 (26)
7 2b2h_A AMT-1, ammonium transpo 4.4 5.5E+02 0.019 23.9 3.4 31 159-189 31-61 (399)
8 3rko_K NADH-quinone oxidoreduc 3.9 1.1E+03 0.039 16.8 6.4 32 136-167 61-92 (100)
9 3ug9_A Archaeal-type opsin 1, 3.8 1.7E+03 0.059 20.0 6.2 58 6-63 185-242 (333)
10 3l1l_A Arginine/agmatine antip 3.6 6.5E+02 0.022 22.3 3.2 95 134-235 351-445 (445)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=17.20 E-value=97 Score=28.75 Aligned_cols=10 Identities=0% Similarity=0.106 Sum_probs=4.6
Q ss_pred HHHHHHhhhc
Q 023262 179 AVMWFFYGLF 188 (285)
Q Consensus 179 ~~lW~~YGll 188 (285)
+++|+++.+.
T Consensus 419 ~~~~~~~~~~ 428 (511)
T 4djk_A 419 GLLTSIMAFI 428 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445544443
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.00 E-value=93 Score=18.01 Aligned_cols=13 Identities=46% Similarity=1.211 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhcc
Q 023262 177 LNAVMWFFYGLFL 189 (285)
Q Consensus 177 ~n~~lW~~YGll~ 189 (285)
+.+.+|+..|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4677899999875
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=9.36 E-value=5.1e+02 Score=22.58 Aligned_cols=14 Identities=14% Similarity=-0.130 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhHh
Q 023262 79 FGCVIETIYLALYI 92 (285)
Q Consensus 79 ~G~~l~~~y~~vf~ 92 (285)
..+++.+.-.+.|+
T Consensus 208 P~~li~~ls~~sF~ 221 (321)
T 3tlw_A 208 PMLFILFISWTAFW 221 (321)
T ss_dssp HHHHHHHHHGGGGG
T ss_pred HHHHHHHHhheeec
Confidence 34555555555555
No 4
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.24 E-value=2.6e+02 Score=15.74 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=12.5
Q ss_pred HhccHHHHHHHHHhcC
Q 023262 26 FLAPMPTFYRVCKKKS 41 (285)
Q Consensus 26 ~lSPlp~i~~I~K~Ks 41 (285)
....+|.+..++|+|.
T Consensus 9 La~~LP~liSWiK~kr 24 (26)
T 3qrx_B 9 LTTGLPALISWIKRKR 24 (26)
T ss_pred HHccchHHHHHHHHHh
Confidence 3457899999999875
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=6.35 E-value=1.2e+03 Score=20.95 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=5.5
Q ss_pred HhccHHHHHHHHHh
Q 023262 26 FLAPMPTFYRVCKK 39 (285)
Q Consensus 26 ~lSPlp~i~~I~K~ 39 (285)
|+.+...+.+.+|+
T Consensus 382 y~~~~~~~~~~r~~ 395 (511)
T 4djk_A 382 YFMLFIGYIVLVLK 395 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33343333444433
No 6
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=5.18 E-value=81 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=10.1
Q ss_pred cCeeEEechhHHHH
Q 023262 190 KDVYVAVPNVLGFI 203 (285)
Q Consensus 190 ~D~~i~ipN~iG~~ 203 (285)
+|..+...|++|.+
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 56777778888863
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=4.39 E-value=5.5e+02 Score=23.91 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=24.1
Q ss_pred eecCcccccchHHHHHHHHHHHHHHHhhhcc
Q 023262 159 VRTKSVEFMPFYLSLFLTLNAVMWFFYGLFL 189 (285)
Q Consensus 159 irtKs~~~~p~~~~~~~~~n~~lW~~YGll~ 189 (285)
.|+||+-++=.--.....+.+++|.++|+-.
T Consensus 31 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~l 61 (399)
T 2b2h_A 31 VRRKNAVNMIALSFISLIITVLLWIFYGYSV 61 (399)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788887777667778888889999877654
No 8
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=3.95 E-value=1.1e+03 Score=16.76 Aligned_cols=32 Identities=6% Similarity=0.093 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHhhcccchhheeeecCccccc
Q 023262 136 LGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFM 167 (285)
Q Consensus 136 ~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~ 167 (285)
+.+...+++.+--+-.|+-+....|++.+.++
T Consensus 61 ~~l~~l~~aa~E~alGLallv~~~R~~Gs~~~ 92 (100)
T 3rko_K 61 MYILAISLAAAEASIGLALLLQLHRRRQNLNI 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCSSCBG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 33334444444444445666666666666554
No 9
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=3.77 E-value=1.7e+03 Score=19.99 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHH
Q 023262 6 THDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYY 63 (285)
Q Consensus 6 ~~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~Y 63 (285)
.+.......+.+|.+.-...+..-....++..++...++....--.+..+...+|..|
T Consensus 185 ~~~~~kw~wfvIs~~~~~ily~l~~ge~~kaa~~~~~~~v~~af~~Lr~~vlV~WaIY 242 (333)
T 3ug9_A 185 SKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMF 242 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=3.61 E-value=6.5e+02 Score=22.33 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHhhcccchhheeeecCcccccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhhee
Q 023262 134 RLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYA 213 (285)
Q Consensus 134 ~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~~ 213 (285)
..+.-++++.....|..+.....+.-|++. .. -++......+-+.+...+.+...++. .-..|..+-+.=+.+|+
T Consensus 351 ~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~-r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~y~ 425 (445)
T 3l1l_A 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK-ARPAYLAVTTIAFLYCIWAVVGSGAK---EVMWSFVTLMVITAMYA 425 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG-GCTTTHHHHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc-ccchhHHHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHH
Q ss_pred EEcCCccchhcccccCCCcccc
Q 023262 214 IYRNYRRVVVEDVNKVPEHTVD 235 (285)
Q Consensus 214 iy~~~~~~~~~~~~~~~~~~~~ 235 (285)
++++++++..+ .+.++...|
T Consensus 426 ~~~~~~~~~~~--~~~~~~~~~ 445 (445)
T 3l1l_A 426 LNYNRLHKNPY--PLDAPISKD 445 (445)
T ss_dssp HHHSTTCCCSS--CCCC-----
T ss_pred HHhhhcccCcc--cccccccCC
Done!