Query 023262
Match_columns 285
No_of_seqs 218 out of 1382
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 03:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023262.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023262hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 14.1 65 0.0047 17.3 2.4 19 78-96 9-27 (30)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.0 82 0.006 16.5 1.9 11 55-65 3-13 (26)
3 d1xioa_ f.13.1.1 (A:) Sensory 8.0 4.2E+02 0.031 20.0 8.6 33 155-188 150-182 (226)
4 d1rh5b_ f.23.28.1 (B:) Preprot 4.4 2.5E+02 0.018 17.3 2.4 20 12-33 35-54 (56)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 3.5 2.5E+02 0.018 15.7 1.6 11 77-87 4-14 (36)
6 d1rkla_ f.23.30.1 (A:) Oligosa 3.4 1.3E+02 0.0095 16.7 0.3 20 198-217 8-27 (36)
7 d2axti1 f.23.37.1 (I:1-35) Pho 3.4 2E+02 0.014 16.0 1.1 10 61-70 19-28 (35)
8 d1ku5a_ a.22.1.2 (A:) Archaeal 3.2 5.3E+02 0.039 15.3 4.1 18 29-46 4-21 (66)
9 d1v54c_ f.25.1.1 (C:) Mitochon 3.0 8.5E+02 0.062 18.6 5.4 66 30-95 53-149 (259)
10 d1u7ga_ f.44.1.1 (A:) Ammonium 2.8 3.3E+02 0.024 22.9 2.5 30 159-188 34-63 (383)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.12 E-value=65 Score=17.26 Aligned_cols=19 Identities=26% Similarity=0.828 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHhHhhcCC
Q 023262 78 AFGCVIETIYLALYITFAP 96 (285)
Q Consensus 78 ~~G~~l~~~y~~vf~~y~~ 96 (285)
.+.+++++++..+|++-.|
T Consensus 9 ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4566777777777766444
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.02 E-value=82 Score=16.48 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=6.3
Q ss_pred HHHHHHHHHhh
Q 023262 55 FSAMLWIYYAM 65 (285)
Q Consensus 55 ~n~~lWl~YG~ 65 (285)
.+..+|+.|++
T Consensus 3 aslaiw~fw~f 13 (26)
T d1rzhh2 3 ASLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556666664
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=7.99 E-value=4.2e+02 Score=20.04 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=18.1
Q ss_pred hheeeecCcccccchHHHHHHHHHHHHHHHhhhc
Q 023262 155 MRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF 188 (285)
Q Consensus 155 i~~VirtKs~~~~p~~~~~~~~~n~~lW~~YGll 188 (285)
.++..++++.+ ....-.....+..++|.+|++.
T Consensus 150 ~~~~~~~~~~~-~~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 150 LRAKTRTQSSE-LANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHTTSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444332 2233334445566799999987
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.39 E-value=2.5e+02 Score=17.35 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhccHHHH
Q 023262 12 FAFGLLGNIVSFIVFLAPMPTF 33 (285)
Q Consensus 12 ~~~g~lg~i~si~m~lSPlp~i 33 (285)
.+.|++|.++-+.+ .|+|.+
T Consensus 35 ~i~G~IGf~I~li~--~~i~~i 54 (56)
T d1rh5b_ 35 SLLGIIGYIIHVPA--TYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhhhh
Confidence 35577777666554 466654
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.52 E-value=2.5e+02 Score=15.72 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 023262 77 NAFGCVIETIY 87 (285)
Q Consensus 77 N~~G~~l~~~y 87 (285)
|..|++..+.+
T Consensus 4 N~Lg~iAt~LF 14 (36)
T d2axtm1 4 NQLGLIATALF 14 (36)
T ss_dssp CTTHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555544433
No 6
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.39 E-value=1.3e+02 Score=16.72 Aligned_cols=20 Identities=45% Similarity=0.766 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhhheeEEcC
Q 023262 198 NVLGFIFGVVQMILYAIYRN 217 (285)
Q Consensus 198 N~iG~~l~~~ql~l~~iy~~ 217 (285)
|.+...+|+.-+.+..+|.-
T Consensus 8 n~~~i~fgi~mmtliviyh~ 27 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYHA 27 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHhh
Confidence 88888899988888888753
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.36 E-value=2e+02 Score=16.04 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=8.2
Q ss_pred HHHhhhcCCc
Q 023262 61 IYYAMMKKDA 70 (285)
Q Consensus 61 l~YG~l~~d~ 70 (285)
..+|++.+|+
T Consensus 19 FiFGFLSnDP 28 (35)
T d2axti1 19 FVFGFLSGDP 28 (35)
T ss_dssp HHHHHHTTCT
T ss_pred HHHhhccCCC
Confidence 4789999986
No 8
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=3.16 E-value=5.3e+02 Score=15.34 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.1
Q ss_pred cHHHHHHHHHhcCcCCcc
Q 023262 29 PMPTFYRVCKKKSTEGFQ 46 (285)
Q Consensus 29 Plp~i~~I~K~Kst~~~s 46 (285)
|...++||.|+.....++
T Consensus 4 P~a~I~rI~k~~~~~ris 21 (66)
T d1ku5a_ 4 PIAPVDRLIRKAGAERVS 21 (66)
T ss_dssp CHHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHHhCcccccH
Confidence 788899999986554443
No 9
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.95 E-value=8.5e+02 Score=18.63 Aligned_cols=66 Identities=11% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCcCCccc-----------hhHH---HHHHHHHHHHHHhhhc-----------------CCceeEEeehh
Q 023262 30 MPTFYRVCKKKSTEGFQS-----------LPYV---VALFSAMLWIYYAMMK-----------------KDAFLLITINA 78 (285)
Q Consensus 30 lp~i~~I~K~Kst~~~s~-----------~p~v---~~l~n~~lWl~YG~l~-----------------~d~~~li~~N~ 78 (285)
..=.|++.|+..-++... ..|+ ++++.+..|..+-... .|+..+...|.
T Consensus 53 ~~W~rdvi~E~~~~G~ht~~v~~~~~~G~~lFi~SEv~~F~~~F~ay~~~~~~~~~~~g~~~pp~~i~~~~~~~lpllnT 132 (259)
T d1v54c_ 53 YQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNT 132 (259)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHH
T ss_pred HHHHHHHhhccccCCCccHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcCCCCCccccchhhhHHHHH
Confidence 344677888766555332 1223 4566777776654321 12212335677
Q ss_pred HHHHHHHHHHHhHhhcC
Q 023262 79 FGCVIETIYLALYITFA 95 (285)
Q Consensus 79 ~G~~l~~~y~~vf~~y~ 95 (285)
+=++.+.+.+..-.+.-
T Consensus 133 ~vLl~Ss~t~~~A~~~~ 149 (259)
T d1v54c_ 133 SVLLASGVSITWAHHSL 149 (259)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76777766655554443
No 10
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=3.3e+02 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=20.5
Q ss_pred eecCcccccchHHHHHHHHHHHHHHHhhhc
Q 023262 159 VRTKSVEFMPFYLSLFLTLNAVMWFFYGLF 188 (285)
Q Consensus 159 irtKs~~~~p~~~~~~~~~n~~lW~~YGll 188 (285)
.|+||+.++=..-.+...+..+.|.++|+-
T Consensus 34 vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~ 63 (383)
T d1u7ga_ 34 IRGKNVLSMLTQVTVTFALVCILWVVYGYS 63 (383)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHheeeEeEE
Confidence 466777666566666677788888887654
Done!