Query 023263
Match_columns 285
No_of_seqs 101 out of 123
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 69.8 3.3 0.00011 37.5 3.6 43 145-187 48-96 (226)
2 3hht_A NitrIle hydratase alpha 64.5 4.9 0.00017 36.3 3.5 43 145-187 37-85 (216)
3 2l6f_A Focal adhesion kinase 1 62.2 2.2 7.5E-05 38.5 0.0 7 31-37 108-114 (215)
4 3u6r_H Antibody 1:7 (heavy cha 46.0 4.5 0.00016 32.7 0.2 6 59-64 83-88 (149)
5 3a8g_A NitrIle hydratase subun 39.3 12 0.00041 33.6 1.8 43 145-187 31-79 (207)
6 4fm4_A NitrIle hydratase alpha 38.8 15 0.00052 32.9 2.4 43 145-187 21-69 (209)
7 1ugp_A NitrIle hydratase alpha 38.6 22 0.00077 31.7 3.4 44 145-188 28-77 (203)
8 2zzd_C Thiocyanate hydrolase s 37.0 23 0.00078 32.4 3.3 43 145-187 39-86 (243)
9 1p4b_L Antibody variable light 36.5 7.4 0.00025 30.4 0.0 8 58-65 78-85 (135)
10 3pgw_S U1-70K; protein-RNA com 31.8 35 0.0012 32.3 3.8 6 27-32 103-108 (437)
11 3ng9_A Capsid protein; beta ba 26.0 19 0.00064 37.6 0.9 18 90-107 205-222 (736)
12 3ntt_A Capsid protein; gene th 25.9 17 0.00057 37.9 0.5 18 90-107 195-212 (724)
13 3pgw_S U1-70K; protein-RNA com 21.1 51 0.0017 31.2 2.7 6 62-67 169-174 (437)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=69.78 E-value=3.3 Score=37.54 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=32.4
Q ss_pred HHHcCCcHHHHHHHHh-hcCC--cch-hHHHHHHh--hhhHHhhhcCCc
Q 023263 145 AKTVGIRKMFLLRYLD-LQGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 145 a~~g~is~a~L~rfl~-L~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (285)
++.|.|.++.+.++++ ++.. |.. .+-+.|++ +.||.|||+||.
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~ 96 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGT 96 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHH
Confidence 5679999999999998 4433 321 25566667 999999999995
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=64.50 E-value=4.9 Score=36.28 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=32.1
Q ss_pred HHHcCCcHHHHHHHHhh-cCC--cch-hHHHHHHh--hhhHHhhhcCCc
Q 023263 145 AKTVGIRKMFLLRYLDL-QGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 145 a~~g~is~a~L~rfl~L-~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (285)
++.|.|.++.+.++++. +.. |.. .+-+.|++ +.||.|||+||.
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~ 85 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSE 85 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 45789999999999986 333 321 25566666 999999999994
No 3
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=62.18 E-value=2.2 Score=38.49 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=3.0
Q ss_pred eeecccc
Q 023263 31 LSLRHST 37 (285)
Q Consensus 31 ~~~~~~~ 37 (285)
|+.-|.+
T Consensus 108 LsaaH~L 114 (215)
T 2l6f_A 108 LTAAHAL 114 (215)
Confidence 3444443
No 4
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=46.00 E-value=4.5 Score=32.68 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.3
Q ss_pred ccccCC
Q 023263 59 TIEIPG 64 (285)
Q Consensus 59 T~ei~g 64 (285)
++.|+.
T Consensus 83 sL~I~~ 88 (149)
T 3u6r_H 83 YMELSS 88 (149)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 333433
No 5
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=39.29 E-value=12 Score=33.58 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHcCCcHHHHHHHHhhc-CCcch---hHHHHHHh--hhhHHhhhcCCc
Q 023263 145 AKTVGIRKMFLLRYLDLQ-GSVWP---LGFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 145 a~~g~is~a~L~rfl~L~-~sp~~---l~~L~r~~--~g~r~RlLADP~ 187 (285)
++.|.|+++.+.++.+.- ....| .+-+.|++ +.||.|||+|+.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~ 79 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 79 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHH
Confidence 445777877777777743 22122 25566777 899999999984
No 6
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=38.77 E-value=15 Score=32.93 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHcCCcHHHHHHHHh-hcCCcch---hHHHHHHh--hhhHHhhhcCCc
Q 023263 145 AKTVGIRKMFLLRYLD-LQGSVWP---LGFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 145 a~~g~is~a~L~rfl~-L~~sp~~---l~~L~r~~--~g~r~RlLADP~ 187 (285)
++.|.|.++.+..|.+ ++..-.| .+-+.|++ +.||.|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 3568999999988888 3432222 35667777 999999999983
No 7
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=38.62 E-value=22 Score=31.72 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHcCCcHHHHHHHHhhcCCc-ch---hHHHHHHh--hhhHHhhhcCCcc
Q 023263 145 AKTVGIRKMFLLRYLDLQGSV-WP---LGFLMRYC--FMLRDRMLADPSF 188 (285)
Q Consensus 145 a~~g~is~a~L~rfl~L~~sp-~~---l~~L~r~~--~g~r~RlLADP~F 188 (285)
++.|.|+++.+.++.+.-... .| .+-+.|++ +.||.|||+|+.=
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~a 77 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTE 77 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHH
Confidence 456899999999988853322 22 25566667 9999999999853
No 8
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=36.97 E-value=23 Score=32.45 Aligned_cols=43 Identities=7% Similarity=-0.068 Sum_probs=31.3
Q ss_pred HHHcCCcHHHHHHHHhhcCCcch---hHHHHHHh--hhhHHhhhcCCc
Q 023263 145 AKTVGIRKMFLLRYLDLQGSVWP---LGFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 145 a~~g~is~a~L~rfl~L~~sp~~---l~~L~r~~--~g~r~RlLADP~ 187 (285)
++.|.|+++.+.++++.-..-.| .+-+.|++ +.||.|||+|..
T Consensus 39 ~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~ 86 (243)
T 2zzd_C 39 IEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGV 86 (243)
T ss_dssp HHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChH
Confidence 56788999888888875222122 25667777 999999999984
No 9
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=36.52 E-value=7.4 Score=30.44 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.4
Q ss_pred cccccCCc
Q 023263 58 KTIEIPGK 65 (285)
Q Consensus 58 ~T~ei~g~ 65 (285)
+++.|...
T Consensus 78 ~sL~I~~v 85 (135)
T 1p4b_L 78 AALTITGA 85 (135)
T ss_dssp EEEEEESC
T ss_pred EEEEECCC
Confidence 34444443
No 10
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=31.79 E-value=35 Score=32.34 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=2.9
Q ss_pred ceeeee
Q 023263 27 TTVFLS 32 (285)
Q Consensus 27 ~~~~~~ 32 (285)
++||+.
T Consensus 103 ~~lfV~ 108 (437)
T 3pgw_S 103 KTLFVA 108 (437)
T ss_pred CEEEEe
Confidence 355554
No 11
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=26.00 E-value=19 Score=37.59 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023263 90 PGGGGGGGGDSGGGGGDG 107 (285)
Q Consensus 90 ~~~~ggggg~~ggg~~~g 107 (285)
+||||+|||+||||||-|
T Consensus 205 ~gggg~gg~gg~g~~GVG 222 (736)
T 3ng9_A 205 SGGGAPMADNNEGADGVG 222 (736)
T ss_dssp ------------CCCCTT
T ss_pred cCCCcCCCCCCCCCCccc
No 12
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=25.90 E-value=17 Score=37.85 Aligned_cols=18 Identities=44% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023263 90 PGGGGGGGGDSGGGGGDG 107 (285)
Q Consensus 90 ~~~~ggggg~~ggg~~~g 107 (285)
+||||++||+||||||=|
T Consensus 195 ~gggg~~g~gg~G~~GVG 212 (724)
T 3ntt_A 195 AGGGGPLGDNNQGADGVG 212 (724)
T ss_dssp --------------CCSS
T ss_pred cCCCcCCCCCCCCCCCcc
No 13
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=21.07 E-value=51 Score=31.17 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.4
Q ss_pred cCCccc
Q 023263 62 IPGKIT 67 (285)
Q Consensus 62 i~g~~~ 67 (285)
|.|+.+
T Consensus 169 i~gr~i 174 (437)
T 3pgw_S 169 IDGRRV 174 (437)
T ss_pred ECCEEE
Confidence 344433
Done!