Query 023263
Match_columns 285
No_of_seqs 101 out of 123
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 03:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023263.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023263hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 75.4 1.1 8.2E-05 37.9 4.0 68 125-198 11-84 (203)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 72.1 1.9 0.00014 36.4 4.6 51 145-198 27-83 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 54.2 2.4 0.00017 35.7 1.8 42 146-187 23-70 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 37.2 5.7 0.00041 27.2 1.2 29 168-196 28-56 (57)
5 d2fbqa2 a.121.1.1 (A:81-214) T 24.1 67 0.0049 23.5 5.6 55 152-210 11-67 (134)
6 d1b0na1 a.34.1.1 (A:74-108) Si 23.2 20 0.0015 22.3 1.9 21 142-163 10-30 (35)
7 d1qusa_ d.2.1.6 (A:) 36 kDa so 20.3 16 0.0012 32.0 1.3 60 139-221 100-159 (322)
8 d1lnza1 b.117.1.1 (A:1-157) Ob 16.5 48 0.0035 25.8 3.3 8 81-88 12-19 (157)
9 d1or7a1 a.4.13.2 (A:120-187) S 14.5 80 0.0058 20.1 3.6 62 120-182 2-66 (68)
10 d1udxa1 b.117.1.1 (A:1-156) Ob 14.0 63 0.0046 25.0 3.4 10 80-89 11-20 (156)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=75.42 E-value=1.1 Score=37.94 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHcCCcHHHHHHHHhh-cCC--cch-hHHHHHHh--hhhHHhhhcCCcchhhHhHHhhh
Q 023263 125 EVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDL-QGS--VWP-LGFLMRYC--FMLRDRMLADPSFLFKVGTEIVI 198 (285)
Q Consensus 125 eVl~ea~r~~~sLPaDl~~Aa~~g~is~a~L~rfl~L-~~s--p~~-l~~L~r~~--~g~r~RlLADP~FLfKl~~E~~i 198 (285)
+..++...|...|=.-| ++.|.|+++.+.++++. +.. |.. .+-+.|++ +.||.|||+|+ -+.+-|..+
T Consensus 11 ~~~~~~~~RvkAle~lL---ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~---~aA~~e~G~ 84 (203)
T d1ugpa_ 11 EIQKEITARVKALESML---IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADG---TEACKELGI 84 (203)
T ss_dssp HHHHHHHHHHHHHHHHH---HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCH---HHHHHTTTC
T ss_pred hccccHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHH---HHHHHHcCC
Confidence 33444444443333333 55799999999999994 433 321 25677777 99999999998 455555544
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=72.07 E-value=1.9 Score=36.44 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHcCCcHHHHHHHHh-hcCCcch---hHHHHHHh--hhhHHhhhcCCcchhhHhHHhhh
Q 023263 145 AKTVGIRKMFLLRYLD-LQGSVWP---LGFLMRYC--FMLRDRMLADPSFLFKVGTEIVI 198 (285)
Q Consensus 145 a~~g~is~a~L~rfl~-L~~sp~~---l~~L~r~~--~g~r~RlLADP~FLfKl~~E~~i 198 (285)
++.|.|+++.+.+.++ ++..-.| .+-+.|++ +.||.|||+|+ -+..-|..+
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~---~aA~~e~G~ 83 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDP---ETVLRELGY 83 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSH---HHHHHHHTC
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCH---HHHHHHcCC
Confidence 5569999999999998 4544222 26677777 99999999998 444445443
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=54.22 E-value=2.4 Score=35.71 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHcCCcHHHHHHHHh-hcCCcchh---HHHHHHh--hhhHHhhhcCCc
Q 023263 146 KTVGIRKMFLLRYLD-LQGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (285)
Q Consensus 146 ~~g~is~a~L~rfl~-L~~sp~~l---~~L~r~~--~g~r~RlLADP~ 187 (285)
+.|.|.++.+.++++ ++..-.|. +-+.|++ +.||.|||+|+.
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 458999999999888 35542232 5667777 999999999983
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.24 E-value=5.7 Score=27.18 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.4
Q ss_pred hHHHHHHhhhhHHhhhcCCcchhhHhHHh
Q 023263 168 LGFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (285)
Q Consensus 168 l~~L~r~~~g~r~RlLADP~FLfKl~~E~ 196 (285)
+-.|+.+++-+|+.+++||.-...+..|.
T Consensus 28 le~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 34455567999999999998666666653
No 5
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.07 E-value=67 Score=23.50 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCc-chhHHHHHHhhhhHHhhhcCCc-chhhHhHHhhhhhhhhhhhhhhh
Q 023263 152 KMFLLRYLDLQGSV-WPLGFLMRYCFMLRDRMLADPS-FLFKVGTEIVIDSCCATLAEFQK 210 (285)
Q Consensus 152 ~a~L~rfl~L~~sp-~~l~~L~r~~~g~r~RlLADP~-FLfKl~~E~~i~v~~~~~aE~~k 210 (285)
.+.+.-+|++..+. .-.++++ -+..|.++||+ ++-|+..|..-.+.......+++
T Consensus 11 ~a~~~p~l~~~~~~~~~~~~f~----rLl~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~ 67 (134)
T d2fbqa2 11 HLLVSQAMAVKPRSGNDLSIFM----RLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNE 67 (134)
T ss_dssp HHHHHHHHHSCCSSSCHHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCchhHHH----HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788887543 2234444 47789999997 78888888887788777777766
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.18 E-value=20 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.9
Q ss_pred HHHHHHcCCcHHHHHHHHhhcC
Q 023263 142 MEAAKTVGIRKMFLLRYLDLQG 163 (285)
Q Consensus 142 ~~Aa~~g~is~a~L~rfl~L~~ 163 (285)
++|... +||..+...||+.++
T Consensus 10 keAM~S-GvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAMTS-GVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHc-cCCHHHHHHHHHHHH
Confidence 344444 599999999999875
No 7
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=20.29 E-value=16 Score=32.02 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcHHHHHHHHhhcCCcchhHHHHHHhhhhHHhhhcCCcchhhHhHHhhhhhhhhhhhhhhhccccchhH
Q 023263 139 DDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSE 218 (285)
Q Consensus 139 aDl~~Aa~~g~is~a~L~rfl~L~~sp~~l~~L~r~~~g~r~RlLADP~FLfKl~~E~~i~v~~~~~aE~~kRge~F~~E 218 (285)
+-|.++-+.-+|++.+++.++-+|.+- +-.+- .| -++++-+++.+++.+|.+.|.+|
T Consensus 100 ~~l~~~e~~yGV~~~ii~aiwgvET~y---G~~~G-------------~~-------~v~~aLaTLAf~~~rR~~ff~~E 156 (322)
T d1qusa_ 100 DALNRAWQVYGVPPEIIVGIIGVETRW---GRVMG-------------KT-------RILDALATLSFNYPRRAEYFSGE 156 (322)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTT---TTCCC-------------CE-------EHHHHHHHHHHSCGGGHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhch---hhhcC-------------CC-------cchhhhhhhhhcccchhhhhhHH
Confidence 344555556689999999999888762 21111 11 47788888899999999999999
Q ss_pred HHH
Q 023263 219 FEL 221 (285)
Q Consensus 219 lDf 221 (285)
|--
T Consensus 157 L~a 159 (322)
T d1qusa_ 157 LET 159 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 8
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=16.47 E-value=48 Score=25.76 Aligned_cols=8 Identities=75% Similarity=1.431 Sum_probs=4.4
Q ss_pred CCCCCCCC
Q 023263 81 GGDGGAGD 88 (285)
Q Consensus 81 ~g~g~~g~ 88 (285)
+|.||+|-
T Consensus 12 aG~GG~G~ 19 (157)
T d1lnza1 12 GGDGGNGM 19 (157)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCcc
Confidence 45666553
No 9
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=14.55 E-value=80 Score=20.14 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred cccHHHHHHHHHHhCCCchHHHHHHHHH---cCCcHHHHHHHHhhcCCcchhHHHHHHhhhhHHhh
Q 023263 120 ILKFEEVMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (285)
Q Consensus 120 ll~~~eVl~ea~r~~~sLPaDl~~Aa~~---g~is~a~L~rfl~L~~sp~~l~~L~r~~~g~r~Rl 182 (285)
++-.+|..+...+-...||..-++++.+ .+.+-..+-+-+++..+.. -..+.|+..-+|..|
T Consensus 2 ~l~~~e~~~~l~~~l~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv-~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 2 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV-RSRIFRAREAIDNKV 66 (68)
T ss_dssp EEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHH-HHHHHHHHHHHHHHc
Confidence 3445677777778888899999888877 4677777777777766532 345555555555543
No 10
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.04 E-value=63 Score=25.04 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 023263 80 SGGDGGAGDS 89 (285)
Q Consensus 80 ~~g~g~~g~~ 89 (285)
-+|+||+|--
T Consensus 11 ~~G~GG~G~~ 20 (156)
T d1udxa1 11 AAGRGGDGAV 20 (156)
T ss_dssp ECCCCCCCCC
T ss_pred EecCCCCCce
Confidence 3466666643
Done!