BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023264
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1I6B8|RECX_PSEE4 Regulatory protein RecX OS=Pseudomonas entomophila (strain L48)
GN=recX PE=3 SV=1
Length = 155
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IE + GL++++ Y ES+ R R S+A
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPDELIEPALDRLAEEGLLSEARYLESFIRYR-SNAG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|P94965|RECX_MYCS2 Regulatory protein RecX OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=recX PE=3 SV=2
Length = 188
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A+N+ ++LL RA T E+ +L + +P V V+ GLI+D +AE + RSR
Sbjct: 31 AKNVCLRLLTVRARTRAELETQLTKRGYPDDVSARVLDRLTEVGLIDDEDFAEQWVRSRH 90
Query: 272 SSASWGPR 279
+A G R
Sbjct: 91 LNAGKGKR 98
>sp|Q03Q74|RECX_LACBA Regulatory protein RecX OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=recX PE=3 SV=1
Length = 266
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N A+ L+ + T E+R KL + P+ I A + +S L++D+ YA SY R+
Sbjct: 61 AYNRALDYLSQQLRTEKEVRDKLADLEIPAETIAATLQRLRSLALVDDAHYAASYVRTMM 120
Query: 272 SSASWGPRRIKQ 283
+ GPR I+Q
Sbjct: 121 HTGDKGPRVIRQ 132
>sp|Q5WVQ1|RECX_LEGPL Regulatory protein RecX OS=Legionella pneumophila (strain Lens)
GN=recX PE=3 SV=1
Length = 150
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL+ R ++A+E+ KL K F H ++ + + + G +D Y ESY R+R
Sbjct: 8 ALRLLSRREYSAMELCDKLKQKGFNLHDVQNALNECKRLGYQSDERYVESYIRARIHQG- 66
Query: 276 WGPRRIKQ 283
+GP +I+Q
Sbjct: 67 YGPLKIRQ 74
>sp|A1T7T4|RECX_MYCVP Regulatory protein RecX OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=recX PE=3 SV=1
Length = 184
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A L ++LL RA T E+ L + +P + AV+ GL++D +AE + RSR
Sbjct: 25 ARALCLRLLTARARTRAELEAALAKRGYPDDIAAAVLDRLTQVGLVDDEDFAEQWVRSRR 84
Query: 272 SSASWGPR 279
+A G R
Sbjct: 85 LNAGKGKR 92
>sp|Q87XY8|RECX_PSESM Regulatory protein RecX OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=recX PE=3 SV=2
Length = 155
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IEA + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIEAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|Q4KHC0|RECX_PSEF5 Regulatory protein RecX OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=recX PE=3 SV=1
Length = 155
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IEA + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPEMIEAALDRLTEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPMRIRE 81
>sp|A4XWQ3|RECX_PSEMY Regulatory protein RecX OS=Pseudomonas mendocina (strain ymp)
GN=recX PE=3 SV=1
Length = 150
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+ + GL++++ Y ES+ R + A
Sbjct: 12 AMDLLARREHGRVELTRKLRKRGAPDELIDGALDRLAEEGLLSEARYLESFVAYR-ARAG 70
Query: 276 WGPRRIKQ 283
+GP+RI++
Sbjct: 71 YGPQRIRE 78
>sp|B1JDA1|RECX_PSEPW Regulatory protein RecX OS=Pseudomonas putida (strain W619) GN=recX
PE=3 SV=1
Length = 156
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S+A
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGATDELIELALDRLAEEGLLSEARYLESFIRYR-SNAG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|Q48F95|RECX_PSE14 Regulatory protein RecX OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=recX PE=3 SV=1
Length = 155
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+A + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIDAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPVRIRE 81
>sp|Q4ZWP2|RECX_PSEU2 Regulatory protein RecX OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=recX PE=3 SV=1
Length = 155
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+A + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIDAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPVRIRE 81
>sp|Q65QB1|RECX_MANSM Regulatory protein RecX OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=recX PE=3 SV=1
Length = 153
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A + AV LL+ R ++ E+R K+ K F IE + Q + +D + E+Y R+R
Sbjct: 5 AFSYAVNLLSRREYSEFEIRCKMQEKAFSEQEIEDTLAQLQQKNWQSDKRFTENYLRAR- 63
Query: 272 SSASWGPRRIKQ 283
+ +G RIKQ
Sbjct: 64 AQRGYGVNRIKQ 75
>sp|Q9REV5|RECX_AMYMU Regulatory protein RecX OS=Amycolatopsis mediterranei (strain U-32)
GN=recX PE=3 SV=2
Length = 175
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A+ + LLA RA T E+R+ L K F E ++ GL+ND+ +AE + +SR
Sbjct: 15 AKEICFDLLAVRARTQEELRQALRRKGFDEETSETLLGKLDRAGLVNDAEFAELWVKSRH 74
Query: 272 SS 273
++
Sbjct: 75 TT 76
>sp|B0S177|RECX_FINM2 Regulatory protein RecX OS=Finegoldia magna (strain ATCC 29328)
GN=recX PE=3 SV=1
Length = 205
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
+A ++++ L+ + T E+ KL KKF + +I+ VIT ++ L++D YA+ + +
Sbjct: 59 EAFDISLNFLSYKLRTEKEIITKLKSKKFSTEIIDDVITKLKNLDLLDDYNYAKIFINDK 118
Query: 271 WSSASWGPRRI 281
+ ++ RRI
Sbjct: 119 INLTNYSKRRI 129
>sp|B0KT21|RECX_PSEPG Regulatory protein RecX OS=Pseudomonas putida (strain GB-1) GN=recX
PE=3 SV=1
Length = 156
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPSRIRE 81
>sp|A5W7V1|RECX_PSEP1 Regulatory protein RecX OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=recX PE=3 SV=1
Length = 156
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|Q88ME3|RECX_PSEPK Regulatory protein RecX OS=Pseudomonas putida (strain KT2440)
GN=recX PE=3 SV=1
Length = 156
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|Q8CV64|RECX_OCEIH Regulatory protein RecX OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=recX PE=3
SV=1
Length = 272
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 188 EVAEEM-KILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEA 246
E+ +EM IL+QKD A L + L+ R + E+ L K+ I
Sbjct: 49 ELEDEMISILEQKD-------TLHKAYTLTIHFLSYRMRSEKEVSDYLQKKEVDEEHIAE 101
Query: 247 VITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
+I + ++D +AE + RSR +S+S GP+ I+Q
Sbjct: 102 IIKRLKKEKWVDDQQFAEMFVRSRINSSSKGPKMIQQ 138
>sp|P37862|RECX_PSEPU Regulatory protein RecX OS=Pseudomonas putida GN=recX PE=3 SV=2
Length = 142
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|Q9KEC9|RECX_BACHD Regulatory protein RecX OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=recX PE=3
SV=1
Length = 266
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
Q NLA+ L+ R + E+R L K +IE V+ + L++D +AE++ ++
Sbjct: 64 QKTFNLALHYLSYRMRSVHEVRTYLKKKDREEPIIEHVLHRLTEQRLLDDHAFAEAFIQT 123
Query: 270 RWSSASWGPRRIKQ 283
+ ++ S GP ++KQ
Sbjct: 124 KRATTSKGPLKLKQ 137
>sp|B1MD16|RECX_MYCA9 Regulatory protein RecX OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=recX PE=3 SV=1
Length = 204
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 217 VKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASW 276
++LL +RA T E+ ++L + +P V E ++ + GL+ND+ +A + +SR + +
Sbjct: 54 LRLLTSRARTRAELTERLARRGYPDDVSERIMDRLATAGLVNDADFATQWVQSRHTYSGK 113
Query: 277 GPR 279
G R
Sbjct: 114 GKR 116
>sp|Q47RS5|RECX_THEFY Regulatory protein RecX OS=Thermobifida fusca (strain YX) GN=recX
PE=3 SV=1
Length = 185
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A + ++LL T ++ L ++ P VIEAV+ F G+++D+++AE++ SR
Sbjct: 26 ARAICLRLLTRAPRTRAQLTDALRRREIPDEVIEAVLDRFGEVGIVDDAVFAEAWVDSRH 85
Query: 272 SS 273
+
Sbjct: 86 AG 87
>sp|A5UHA0|RECX_HAEIG Regulatory protein RecX OS=Haemophilus influenzae (strain PittGG)
GN=recX PE=3 SV=1
Length = 152
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N V LL+ R ++ E+R K+ K F I+ ++ Q++ +D ++E+Y SR
Sbjct: 5 AFNYIVNLLSHREYSEFELRNKMQEKNFSEEEIDEALSRCQAKNWQSDRRFSENYLNSR- 63
Query: 272 SSASWGPRRIKQ 283
+ +G RI+Q
Sbjct: 64 AQKGYGVGRIRQ 75
>sp|Q9CDN7|RECX_LACLA Regulatory protein RecX OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=recX PE=3 SV=1
Length = 270
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 201 FYLQAAKARQDAE--------------NLAVKLLATRAFTAVEMRKKLNGKKFP-SHVIE 245
F+L K DA+ +LA+ ++ + T+ E+RK L+ + + I+
Sbjct: 37 FFLNVDKELDDADLEEIQSYDQFAQGKSLALYYISFKMRTSSEVRKYLSEHEIDNTDQID 96
Query: 246 AVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
VI LIND YAE++ + S S GP +IKQ
Sbjct: 97 EVINILTKNNLINDKAYAENFIEGKISMGSAGPYQIKQ 134
>sp|Q9CK20|RECX_PASMU Regulatory protein RecX OS=Pasteurella multocida (strain Pm70)
GN=recX PE=3 SV=2
Length = 164
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N V LLA R ++ E+R K+ K F I+ + Q + ND +AE+Y R
Sbjct: 18 ALNYVVGLLARREYSEFELRCKMQEKGFSEQEIDDTLAFCQQKNWQNDRRFAENYLTFR- 76
Query: 272 SSASWGPRRIKQ 283
+ +G RIKQ
Sbjct: 77 AQRGYGFARIKQ 88
>sp|Q88XG5|RECX_LACPL Regulatory protein RecX OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=recX PE=3 SV=2
Length = 267
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 203 LQAAKARQD----AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258
LQAA D A A+ L+ + T E+ KL ++ VI+A + + L+N
Sbjct: 49 LQAAMIAADDVSKAYTRALDYLSHQLRTEKEVHDKLRDEEIDESVIDATMQQLRDMRLLN 108
Query: 259 DSLYAESYSRSRWSSASWGPRRIKQ 283
D YA+++ R+ ++ GPR I+Q
Sbjct: 109 DQQYADAFVRTAKRTSDKGPRVIRQ 133
>sp|A7Z2L7|RECX_BACA2 Regulatory protein RecX OS=Bacillus amyloliquefaciens (strain
FZB42) GN=recX PE=3 SV=1
Length = 263
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 191 EEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD 250
+E+ IL+ +Q + A N AV+ L+ R + E+R L K+ P VI VI
Sbjct: 46 DELDILE-----IQYGDDVKKAFNRAVEFLSYRMRSEKEVRDHLKKKETPDMVISEVIHK 100
Query: 251 FQSRGLINDSLYAESYSRSRWSSASWGP 278
+ND +AE+Y+ + + GP
Sbjct: 101 LYDYRYLNDKEFAEAYASTHKKTNGKGP 128
>sp|A3PYE4|RECX_MYCSJ Regulatory protein RecX OS=Mycobacterium sp. (strain JLS) GN=recX
PE=3 SV=1
Length = 183
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A ++LL RA T E+ KL + + V+ V+ GL++D +AE + RSR
Sbjct: 26 AHAYCLRLLTARARTRAELSGKLTQRGYDEPVVARVLDRLVEVGLVDDEDFAEQWVRSRH 85
Query: 272 SSASWGPR 279
A G R
Sbjct: 86 LYAGKGKR 93
>sp|A5UEC2|RECX_HAEIE Regulatory protein RecX OS=Haemophilus influenzae (strain PittEE)
GN=recX PE=3 SV=1
Length = 152
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N V LL+ R ++ E+R K+ K F I+ ++ Q++ +D ++E+Y SR
Sbjct: 5 AFNYIVNLLSRREYSEFELRNKMQEKNFSEEEIDEALSRCQAKNWQSDRRFSENYLNSR- 63
Query: 272 SSASWGPRRIKQ 283
+G RI+Q
Sbjct: 64 VQKGYGVGRIRQ 75
>sp|Q1BA28|RECX_MYCSS Regulatory protein RecX OS=Mycobacterium sp. (strain MCS) GN=recX
PE=3 SV=1
Length = 183
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A ++LL RA T E+ KL + + V+ V+ GL++D +AE + RSR
Sbjct: 26 AHAYCLRLLTARARTRAELAGKLTQRGYDEPVVARVLDRLVDVGLVDDEDFAEQWVRSRH 85
Query: 272 SSASWGPR 279
A G R
Sbjct: 86 LYAGKGKR 93
>sp|A1UEY4|RECX_MYCSK Regulatory protein RecX OS=Mycobacterium sp. (strain KMS) GN=recX
PE=3 SV=1
Length = 183
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A ++LL RA T E+ KL + + V+ V+ GL++D +AE + RSR
Sbjct: 26 AHAYCLRLLTARARTRAELAGKLTQRGYDEPVVARVLDRLVDVGLVDDEDFAEQWVRSRH 85
Query: 272 SSASWGPR 279
A G R
Sbjct: 86 LYAGKGKR 93
>sp|C3KDG1|RECX_PSEFS Regulatory protein RecX OS=Pseudomonas fluorescens (strain SBW25)
GN=recX PE=3 SV=1
Length = 155
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAEPEMIETALDRLTEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|P43706|RECX_HAEIN Regulatory protein RecX OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=recX PE=3 SV=2
Length = 152
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N V LL+ R ++ E+R K+ K F I+ ++ Q++ +D ++E+Y SR
Sbjct: 5 AFNYIVNLLSRREYSEFELRNKMQEKNFSEEEIDDALSRCQAKNWQSDRRFSENYLNSR- 63
Query: 272 SSASWGPRRIKQ 283
+G RI+Q
Sbjct: 64 VQKGYGVGRIRQ 75
>sp|Q4QMV1|RECX_HAEI8 Regulatory protein RecX OS=Haemophilus influenzae (strain 86-028NP)
GN=recX PE=3 SV=1
Length = 152
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N V LL+ R ++ E+R K+ K F I+ ++ Q++ +D ++E+Y SR
Sbjct: 5 AFNYIVNLLSRREYSEFELRNKMQEKNFSEEEIDDALSLCQAKNWQSDRRFSENYLNSR- 63
Query: 272 SSASWGPRRIKQ 283
S G RI+Q
Sbjct: 64 SQKGCGVGRIRQ 75
>sp|Q8DC50|RECX_VIBVU Regulatory protein RecX OS=Vibrio vulnificus (strain CMCP6) GN=recX
PE=3 SV=1
Length = 153
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
++ A++LL+ R E+R+KL K + S IE+ + G ++D YA+S R
Sbjct: 12 CKDTAIQLLSRRDHGQYELRQKLTVKGYASQDIESAMHFCLEHGYLDDLRYAKSQIRQHV 71
Query: 272 SSASWGPRRIKQ 283
G RRI+Q
Sbjct: 72 GKGH-GERRIRQ 82
>sp|Q02VU7|RECX_LACLS Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=recX PE=3 SV=1
Length = 269
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 214 NLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272
+LA+ ++ + T E+RK L + IE V++ LIND YAE++ + S
Sbjct: 63 SLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGKIS 122
Query: 273 SASWGPRRIKQ 283
S GP +IKQ
Sbjct: 123 MGSSGPYQIKQ 133
>sp|A2RNY5|RECX_LACLM Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=recX PE=3 SV=1
Length = 269
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 214 NLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272
+LA+ ++ + T E+RK L + IE V++ LIND YAE++ + S
Sbjct: 63 SLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGKIS 122
Query: 273 SASWGPRRIKQ 283
S GP +IKQ
Sbjct: 123 MGSSGPYQIKQ 133
>sp|P37859|RECX_MYCLE Regulatory protein RecX OS=Mycobacterium leprae (strain TN) GN=recX
PE=3 SV=1
Length = 171
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T ++ +L + + HV E V+ + GL++D+ +AE + RS
Sbjct: 15 EQARILCLRLLTARSRTRAQLFGQLAKRGYADHVSERVLDRLAAVGLLDDNDFAEQWVRS 74
Query: 270 R 270
R
Sbjct: 75 R 75
>sp|B8ZQT6|RECX_MYCLB Regulatory protein RecX OS=Mycobacterium leprae (strain Br4923)
GN=recX PE=3 SV=1
Length = 171
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T ++ +L + + HV E V+ + GL++D+ +AE + RS
Sbjct: 15 EQARILCLRLLTARSRTRAQLFGQLAKRGYADHVSERVLDRLAAVGLLDDNDFAEQWVRS 74
Query: 270 R 270
R
Sbjct: 75 R 75
>sp|P0A5U8|RECX_MYCTU Regulatory protein RecX OS=Mycobacterium tuberculosis GN=recX PE=1
SV=1
Length = 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T E+ +L + +P + V+ + GL++D+ +AE + +S
Sbjct: 15 EQARALCLRLLTARSRTRAELAGQLAKRGYPEDIGNRVLDRLAAVGLVDDTDFAEQWVQS 74
Query: 270 RWSSAS 275
R ++A+
Sbjct: 75 RRANAA 80
>sp|A5U688|RECX_MYCTA Regulatory protein RecX OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=recX PE=3 SV=1
Length = 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T E+ +L + +P + V+ + GL++D+ +AE + +S
Sbjct: 15 EQARALCLRLLTARSRTRAELAGQLAKRGYPEDIGNRVLDRLAAVGLVDDTDFAEQWVQS 74
Query: 270 RWSSAS 275
R ++A+
Sbjct: 75 RRANAA 80
>sp|C1AFJ5|RECX_MYCBT Regulatory protein RecX OS=Mycobacterium bovis (strain BCG / Tokyo
172 / ATCC 35737 / TMC 1019) GN=recX PE=3 SV=1
Length = 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T E+ +L + +P + V+ + GL++D+ +AE + +S
Sbjct: 15 EQARALCLRLLTARSRTRAELAGQLAKRGYPEDIGNRVLDRLAAVGLVDDTDFAEQWVQS 74
Query: 270 RWSSAS 275
R ++A+
Sbjct: 75 RRANAA 80
>sp|A1KM74|RECX_MYCBP Regulatory protein RecX OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=recX PE=3 SV=1
Length = 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T E+ +L + +P + V+ + GL++D+ +AE + +S
Sbjct: 15 EQARALCLRLLTARSRTRAELAGQLAKRGYPEDIGNRVLDRLAAVGLVDDTDFAEQWVQS 74
Query: 270 RWSSAS 275
R ++A+
Sbjct: 75 RRANAA 80
>sp|P0A5U9|RECX_MYCBO Regulatory protein RecX OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=recX PE=3 SV=1
Length = 174
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL R+ T E+ +L + +P + V+ + GL++D+ +AE + +S
Sbjct: 15 EQARALCLRLLTARSRTRAELAGQLAKRGYPEDIGNRVLDRLAAVGLVDDTDFAEQWVQS 74
Query: 270 RWSSAS 275
R ++A+
Sbjct: 75 RRANAA 80
>sp|B1XY02|RECX_LEPCP Regulatory protein RecX OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=recX PE=3 SV=1
Length = 157
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+K LA R + E+ +KL IEAV+ D Q+RG ++++ Y S R +
Sbjct: 14 ALKYLAAREHSRAELARKLAPHAGDPAEIEAVLDDLQARGFLSEARYVASVVHRR--AER 71
Query: 276 WGPRRIKQ 283
+G RI+Q
Sbjct: 72 FGVARIRQ 79
>sp|P37861|RECX_PSEFL Regulatory protein RecX OS=Pseudomonas fluorescens GN=recX PE=3
SV=1
Length = 155
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAEPEMIETALDRLTEEGLLSEARYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQ 283
+GP RI++
Sbjct: 74 YGPARIRE 81
>sp|A1WXK6|RECX_HALHL Regulatory protein RecX OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=recX PE=3 SV=1
Length = 161
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 204 QAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYA 263
+A A + + A++LLA R T E+ +KL + + V+ GL+++ +A
Sbjct: 3 EAGAASEAVRDAALRLLARREHTRRELAQKLARRGHDPGYVHPVLEALAEEGLLDEGRFA 62
Query: 264 ESYSRSRWSSASWGPRRIKQ 283
E + RSR GP RI Q
Sbjct: 63 EVFVRSRVERGQ-GPVRIAQ 81
>sp|Q182L1|RECX_CLOD6 Regulatory protein RecX OS=Clostridium difficile (strain 630)
GN=recX PE=3 SV=1
Length = 212
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 191 EEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD 250
EE+K + + Y++A +N A+ +L+ + ++++KL+ + F ++IE VI
Sbjct: 48 EELKPILDDEMYIKA-------KNKALNILSHADQSEKKLKEKLSSE-FDENIIERVIDF 99
Query: 251 FQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW 285
+S L+NDS+ A+ + + G RIKQ
Sbjct: 100 LKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNL 134
>sp|Q8FPD4|RECX_COREF Regulatory protein RecX OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=recX PE=3 SV=1
Length = 210
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 201 FYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS 260
F +A + + + A+ LL RA + E++ +L F +IE V+ D LIND
Sbjct: 40 FDREAEEKKAEVRRRALLLLDQRARSRSELQGRLGALDFDHDIIEEVLDDLTRANLINDE 99
Query: 261 LYAESYSRSR 270
+A+ + R R
Sbjct: 100 SFAQEWVRQR 109
>sp|P37860|RECX_PSEAE Regulatory protein RecX OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=recX PE=3
SV=2
Length = 153
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R E+ +KL + + +I+ + GL+++S Y ES+ SR S
Sbjct: 15 AMDLLARREHGRAELSRKLRQRGASAELIDPALDRLAEEGLLDESRYLESFIASRARSGH 74
Query: 276 WGPRRIKQ 283
GP RI++
Sbjct: 75 -GPLRIRE 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,688,294
Number of Sequences: 539616
Number of extensions: 3968922
Number of successful extensions: 10475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 10319
Number of HSP's gapped (non-prelim): 248
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)