Query 023264
Match_columns 285
No_of_seqs 216 out of 1074
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5l_A Regulatory protein RECX 100.0 2.9E-30 9.8E-35 230.2 12.5 127 142-285 8-136 (221)
2 3e3v_A Regulatory protein RECX 99.9 1.2E-22 4.2E-27 175.7 7.5 93 183-285 1-93 (177)
3 3dfg_A Xcrecx, regulatory prot 99.8 1.1E-19 3.7E-24 155.1 7.6 78 207-285 14-91 (162)
4 3c1d_A Protein ORAA, regulator 99.8 5.1E-19 1.7E-23 150.1 9.4 76 209-285 4-89 (159)
5 3c1d_A Protein ORAA, regulator 94.7 0.18 6.2E-06 42.0 9.3 78 185-272 44-123 (159)
6 3dfg_A Xcrecx, regulatory prot 93.2 0.15 5.2E-06 42.8 6.0 57 211-272 69-125 (162)
7 3e3v_A Regulatory protein RECX 89.7 3.4 0.00012 35.0 10.9 62 184-250 46-109 (177)
8 3d5l_A Regulatory protein RECX 89.3 0.75 2.6E-05 40.4 6.6 60 210-272 112-171 (221)
9 2fu4_A Ferric uptake regulatio 84.0 2 6.8E-05 31.0 5.4 45 214-258 20-69 (83)
10 1y0u_A Arsenical resistance op 80.9 3.7 0.00013 30.4 6.0 43 213-259 33-75 (96)
11 3cuo_A Uncharacterized HTH-typ 80.8 3.6 0.00012 29.8 5.8 44 212-258 25-69 (99)
12 2heo_A Z-DNA binding protein 1 80.7 3.4 0.00012 29.4 5.5 43 213-258 12-56 (67)
13 3l7w_A Putative uncharacterize 80.6 2.8 9.7E-05 32.2 5.4 45 214-258 12-57 (108)
14 2doa_A RNA polymerase II elong 80.4 2.2 7.4E-05 34.4 4.7 47 212-258 13-59 (104)
15 3jth_A Transcription activator 80.0 3.5 0.00012 30.4 5.6 44 212-258 24-67 (98)
16 3tgn_A ADC operon repressor AD 79.6 3 0.0001 32.1 5.3 41 215-258 42-82 (146)
17 1xma_A Predicted transcription 79.4 2.1 7.2E-05 35.2 4.5 45 213-257 43-92 (145)
18 2oqg_A Possible transcriptiona 78.4 4.1 0.00014 30.5 5.6 44 212-258 22-65 (114)
19 3hhh_A Transcriptional regulat 78.2 3.8 0.00013 32.3 5.6 45 214-258 16-63 (116)
20 4esb_A Transcriptional regulat 78.2 3.3 0.00011 32.5 5.2 45 214-258 12-59 (115)
21 3f8b_A Transcriptional regulat 78.1 2.9 9.8E-05 32.8 4.8 45 214-258 15-64 (116)
22 1p6r_A Penicillinase repressor 78.1 5.1 0.00017 28.7 5.8 42 217-258 15-58 (82)
23 2e5n_A RNA polymerase II elong 78.0 3.5 0.00012 33.0 5.2 46 212-257 14-59 (100)
24 3pqk_A Biofilm growth-associat 77.8 4.3 0.00015 30.2 5.5 46 211-259 23-68 (102)
25 4esf_A PADR-like transcription 76.7 3.3 0.00011 32.7 4.8 45 214-258 14-61 (117)
26 2esh_A Conserved hypothetical 76.6 2.3 7.8E-05 33.2 3.8 47 212-258 14-66 (118)
27 3ri2_A Transcriptional regulat 76.5 3.4 0.00012 33.1 4.9 46 212-258 22-69 (123)
28 1qbj_A Protein (double-strande 76.2 6.7 0.00023 29.5 6.2 43 213-258 12-58 (81)
29 2htj_A P fimbrial regulatory p 76.0 4.6 0.00016 29.1 5.1 41 215-258 4-45 (81)
30 1ub9_A Hypothetical protein PH 75.6 4.3 0.00015 29.4 4.9 43 213-258 18-61 (100)
31 1sfx_A Conserved hypothetical 74.7 7.9 0.00027 27.9 6.1 41 215-258 24-65 (109)
32 1r1t_A Transcriptional repress 74.6 13 0.00046 29.0 7.9 42 214-258 49-90 (122)
33 1r1u_A CZRA, repressor protein 74.6 7.4 0.00025 29.3 6.1 44 212-258 27-70 (106)
34 3bro_A Transcriptional regulat 74.5 5.5 0.00019 30.3 5.4 42 214-258 37-81 (141)
35 3ff5_A PEX14P, peroxisomal bio 73.8 11 0.00039 26.8 6.5 41 210-250 10-53 (54)
36 3f3x_A Transcriptional regulat 73.1 5.5 0.00019 30.7 5.2 42 214-258 40-81 (144)
37 2f2e_A PA1607; transcription f 73.1 5.6 0.00019 32.2 5.4 41 215-258 28-68 (146)
38 3eco_A MEPR; mutlidrug efflux 72.9 5.7 0.00019 30.3 5.2 42 214-258 34-78 (139)
39 2kko_A Possible transcriptiona 72.8 4.4 0.00015 30.9 4.5 43 213-258 27-69 (108)
40 2k4b_A Transcriptional regulat 72.7 4.1 0.00014 31.5 4.3 36 223-258 48-84 (99)
41 2y75_A HTH-type transcriptiona 71.9 5.7 0.0002 30.9 5.1 41 215-258 13-57 (129)
42 2gxg_A 146AA long hypothetical 71.6 5.9 0.0002 30.3 5.0 41 215-258 41-81 (146)
43 1z7u_A Hypothetical protein EF 71.1 4.9 0.00017 30.8 4.5 42 215-258 26-67 (112)
44 2dql_A PEX protein; circadian 71.1 4.7 0.00016 31.6 4.4 44 215-258 26-73 (115)
45 1sd4_A Penicillinase repressor 71.0 9.4 0.00032 28.9 6.0 36 223-258 23-59 (126)
46 2hzt_A Putative HTH-type trans 70.9 6.1 0.00021 30.0 4.9 43 214-258 17-59 (107)
47 2fsw_A PG_0823 protein; alpha- 70.6 5.8 0.0002 30.0 4.7 42 215-258 29-70 (107)
48 2g9w_A Conserved hypothetical 70.3 9.7 0.00033 30.0 6.1 45 214-258 12-59 (138)
49 3elk_A Putative transcriptiona 70.0 2.5 8.6E-05 33.4 2.6 46 213-258 16-64 (117)
50 2d1h_A ST1889, 109AA long hypo 69.9 8.9 0.0003 27.7 5.5 38 218-258 29-67 (109)
51 1tbx_A ORF F-93, hypothetical 69.8 9.1 0.00031 28.0 5.6 43 216-258 13-57 (99)
52 1yg2_A Gene activator APHA; vi 67.8 9.1 0.00031 31.7 5.7 45 214-258 5-54 (179)
53 3bpv_A Transcriptional regulat 67.7 9.6 0.00033 28.8 5.4 40 216-258 34-74 (138)
54 1mzb_A Ferric uptake regulatio 67.6 9.2 0.00032 30.4 5.5 46 213-258 20-70 (136)
55 3r0a_A Putative transcriptiona 67.5 11 0.00038 29.4 5.9 42 214-258 29-73 (123)
56 1qgp_A Protein (double strande 66.7 7.8 0.00027 28.5 4.5 42 214-258 17-62 (77)
57 1ku9_A Hypothetical protein MJ 66.2 11 0.00038 28.5 5.5 42 214-258 29-72 (152)
58 3oop_A LIN2960 protein; protei 66.1 9.6 0.00033 29.2 5.2 40 216-258 42-82 (143)
59 1u2w_A CADC repressor, cadmium 66.0 12 0.00042 29.0 5.8 43 214-259 45-88 (122)
60 2fbh_A Transcriptional regulat 65.8 9.4 0.00032 29.0 5.1 41 215-258 41-83 (146)
61 3u2r_A Regulatory protein MARR 65.8 4.5 0.00015 32.3 3.3 42 214-258 49-93 (168)
62 2qww_A Transcriptional regulat 65.7 9.7 0.00033 29.5 5.2 42 214-258 44-86 (154)
63 2xvc_A ESCRT-III, SSO0910; cel 64.7 8.7 0.0003 28.0 4.2 35 223-257 8-55 (59)
64 3f6o_A Probable transcriptiona 64.3 7.7 0.00026 29.8 4.3 45 211-258 18-62 (118)
65 2pg4_A Uncharacterized protein 64.2 8.6 0.00029 28.2 4.4 40 216-258 20-62 (95)
66 2w57_A Ferric uptake regulatio 64.2 12 0.00042 30.3 5.8 46 213-258 19-69 (150)
67 2o03_A Probable zinc uptake re 64.2 14 0.00047 29.2 5.9 46 213-258 13-62 (131)
68 3bdd_A Regulatory protein MARR 64.2 12 0.00042 28.2 5.4 41 215-258 35-76 (142)
69 3ech_A MEXR, multidrug resista 63.9 8.4 0.00029 29.6 4.5 41 215-258 41-82 (142)
70 1oyi_A Double-stranded RNA-bin 63.5 11 0.00038 28.8 4.9 45 211-258 17-61 (82)
71 2hr3_A Probable transcriptiona 63.5 18 0.00062 27.6 6.3 42 214-258 38-81 (147)
72 2qvo_A Uncharacterized protein 63.5 13 0.00045 27.3 5.3 30 225-257 31-60 (95)
73 1lj9_A Transcriptional regulat 63.3 12 0.0004 28.6 5.2 40 216-258 34-74 (144)
74 3kp7_A Transcriptional regulat 63.2 8.7 0.0003 29.8 4.5 42 214-258 41-82 (151)
75 2lkp_A Transcriptional regulat 63.2 10 0.00034 28.8 4.7 43 213-258 34-76 (119)
76 2nyx_A Probable transcriptiona 63.2 11 0.00037 30.2 5.1 41 215-258 49-90 (168)
77 3mwm_A ZUR, putative metal upt 62.7 19 0.00066 28.8 6.6 48 211-258 14-65 (139)
78 2fe3_A Peroxide operon regulat 62.3 16 0.00056 29.3 6.1 46 213-258 24-73 (145)
79 3deu_A Transcriptional regulat 61.9 12 0.0004 30.1 5.1 41 215-258 57-99 (166)
80 2k02_A Ferrous iron transport 61.7 12 0.00039 28.8 4.8 40 215-257 6-46 (87)
81 2jsc_A Transcriptional regulat 61.6 7 0.00024 30.2 3.6 43 213-258 23-65 (118)
82 3nqo_A MARR-family transcripti 61.1 14 0.00048 30.3 5.6 43 213-258 43-88 (189)
83 2fbi_A Probable transcriptiona 60.5 13 0.00043 28.2 4.9 41 215-258 40-81 (142)
84 2rdp_A Putative transcriptiona 60.5 15 0.00052 28.1 5.4 40 216-258 47-87 (150)
85 2w84_A Peroxisomal membrane pr 60.5 21 0.00073 26.8 5.9 40 212-251 17-59 (70)
86 2a61_A Transcriptional regulat 60.1 16 0.00055 27.7 5.4 41 215-258 37-78 (145)
87 3nrv_A Putative transcriptiona 60.0 16 0.00054 28.0 5.4 40 216-258 45-85 (148)
88 3g3z_A NMB1585, transcriptiona 59.6 16 0.00056 27.9 5.4 41 215-258 35-76 (145)
89 2e1n_A PEX, period extender; c 59.4 9.3 0.00032 31.2 4.1 44 215-258 38-85 (138)
90 1xn7_A Hypothetical protein YH 59.1 14 0.00049 27.4 4.8 40 215-257 6-46 (78)
91 1s3j_A YUSO protein; structura 58.9 15 0.00051 28.3 5.1 40 215-257 41-81 (155)
92 1yyv_A Putative transcriptiona 58.8 11 0.00036 30.1 4.3 43 214-258 38-80 (131)
93 2zfw_A PEX; five alpha-helices 58.7 8 0.00027 32.1 3.7 44 215-258 48-95 (148)
94 3hsr_A HTH-type transcriptiona 58.7 12 0.00041 28.8 4.5 42 214-258 39-81 (140)
95 3s2w_A Transcriptional regulat 58.6 15 0.00052 28.8 5.2 40 216-258 55-95 (159)
96 3k0l_A Repressor protein; heli 58.6 12 0.00042 29.5 4.7 41 215-258 50-91 (162)
97 3kp1_E D-ornithine aminomutase 58.4 76 0.0026 26.1 9.3 89 182-284 14-102 (121)
98 3cdh_A Transcriptional regulat 58.4 14 0.00046 28.7 4.8 42 214-258 46-88 (155)
99 1i1g_A Transcriptional regulat 58.2 17 0.00057 28.2 5.3 40 216-258 9-49 (141)
100 2nnn_A Probable transcriptiona 58.1 17 0.00056 27.4 5.2 40 216-258 43-83 (140)
101 2xig_A Ferric uptake regulatio 58.0 17 0.00057 29.6 5.4 47 212-258 28-78 (150)
102 4hbl_A Transcriptional regulat 57.9 12 0.00042 29.0 4.5 41 215-258 45-86 (149)
103 3jw4_A Transcriptional regulat 57.9 7.3 0.00025 30.2 3.2 42 214-258 44-88 (148)
104 2p4w_A Transcriptional regulat 57.5 18 0.00062 31.1 5.9 44 212-258 16-59 (202)
105 2jt1_A PEFI protein; solution 57.5 21 0.00071 26.5 5.5 32 223-257 23-54 (77)
106 3bj6_A Transcriptional regulat 57.4 17 0.00058 27.9 5.2 41 215-258 44-85 (152)
107 2pex_A Transcriptional regulat 57.0 17 0.00059 28.1 5.2 40 216-258 52-92 (153)
108 1sfu_A 34L protein; protein/Z- 56.3 19 0.00066 27.2 5.1 43 213-258 17-60 (75)
109 3cjn_A Transcriptional regulat 56.3 17 0.00059 28.4 5.1 41 215-258 56-97 (162)
110 3e6m_A MARR family transcripti 55.8 16 0.00053 28.8 4.9 41 215-258 57-98 (161)
111 2eth_A Transcriptional regulat 55.8 17 0.00057 28.3 5.0 41 215-258 48-89 (154)
112 2fa5_A Transcriptional regulat 55.7 19 0.00066 28.0 5.4 41 215-258 53-94 (162)
113 1jgs_A Multiple antibiotic res 55.6 21 0.00073 26.9 5.4 40 216-258 39-79 (138)
114 1on2_A Transcriptional regulat 55.4 34 0.0012 26.4 6.7 43 213-258 10-53 (142)
115 3df8_A Possible HXLR family tr 54.5 14 0.00049 28.3 4.3 45 213-259 29-75 (111)
116 4ets_A Ferric uptake regulatio 54.1 20 0.00069 29.6 5.4 46 213-258 35-86 (162)
117 1xd7_A YWNA; structural genomi 53.0 21 0.00073 28.5 5.3 41 215-258 13-54 (145)
118 1okr_A MECI, methicillin resis 52.8 25 0.00084 26.4 5.4 37 222-258 22-59 (123)
119 4a5n_A Uncharacterized HTH-typ 52.6 18 0.00063 29.2 4.8 42 215-258 30-71 (131)
120 2x4h_A Hypothetical protein SS 52.4 33 0.0011 26.3 6.1 34 222-258 29-62 (139)
121 3fm5_A Transcriptional regulat 52.3 16 0.00055 28.2 4.3 42 214-258 42-85 (150)
122 4b8x_A SCO5413, possible MARR- 51.9 24 0.00081 27.8 5.3 40 215-257 39-81 (147)
123 2frh_A SARA, staphylococcal ac 51.7 16 0.00055 28.1 4.2 41 215-258 41-84 (127)
124 2bv6_A MGRA, HTH-type transcri 51.6 13 0.00046 28.2 3.7 41 215-258 41-82 (142)
125 3l9f_A Putative uncharacterize 51.3 9.8 0.00033 33.0 3.2 45 214-258 39-88 (204)
126 2h09_A Transcriptional regulat 50.8 44 0.0015 26.2 6.7 46 210-258 39-85 (155)
127 3tqn_A Transcriptional regulat 50.3 42 0.0015 25.6 6.4 30 226-258 35-64 (113)
128 4aik_A Transcriptional regulat 50.1 26 0.0009 27.8 5.4 40 215-257 35-76 (151)
129 3f6v_A Possible transcriptiona 50.0 17 0.0006 29.6 4.3 45 211-258 58-102 (151)
130 2pn6_A ST1022, 150AA long hypo 49.1 41 0.0014 26.3 6.3 41 215-258 7-48 (150)
131 1fx7_A Iron-dependent represso 49.1 25 0.00086 30.1 5.4 43 213-258 11-55 (230)
132 1ylf_A RRF2 family protein; st 48.5 31 0.0011 27.7 5.6 41 215-258 18-61 (149)
133 1z91_A Organic hydroperoxide r 47.9 17 0.00058 27.8 3.7 33 223-258 53-85 (147)
134 2v9v_A Selenocysteine-specific 47.7 55 0.0019 25.2 6.8 48 209-257 64-119 (135)
135 4fx0_A Probable transcriptiona 47.2 32 0.0011 27.2 5.4 40 215-257 37-82 (148)
136 1uly_A Hypothetical protein PH 47.0 36 0.0012 28.8 6.0 43 213-258 22-64 (192)
137 3t8r_A Staphylococcus aureus C 46.5 26 0.0009 28.2 4.8 40 216-258 16-59 (143)
138 3k2z_A LEXA repressor; winged 46.5 47 0.0016 27.6 6.6 45 210-257 8-54 (196)
139 3bja_A Transcriptional regulat 46.3 15 0.00052 27.5 3.2 40 216-258 38-78 (139)
140 2dk5_A DNA-directed RNA polyme 45.5 31 0.0011 26.2 4.8 33 222-257 34-66 (91)
141 3neu_A LIN1836 protein; struct 45.4 54 0.0018 25.6 6.4 31 225-258 38-68 (125)
142 3boq_A Transcriptional regulat 45.2 9.8 0.00034 29.7 2.0 42 214-258 50-93 (160)
143 2p8t_A Hypothetical protein PH 44.5 28 0.00097 30.5 5.0 43 213-259 20-62 (200)
144 3lwf_A LIN1550 protein, putati 44.2 35 0.0012 28.3 5.4 41 215-258 31-75 (159)
145 2w25_A Probable transcriptiona 43.9 48 0.0016 26.1 6.0 41 215-258 11-52 (150)
146 3eyy_A Putative iron uptake re 43.2 43 0.0015 26.9 5.6 35 224-258 33-69 (145)
147 2cfx_A HTH-type transcriptiona 42.2 55 0.0019 25.7 6.1 40 216-258 10-50 (144)
148 2fbk_A Transcriptional regulat 41.9 9.1 0.00031 31.0 1.4 41 214-257 72-116 (181)
149 1p4x_A Staphylococcal accessor 41.7 27 0.00091 30.9 4.5 40 215-257 162-204 (250)
150 2p5v_A Transcriptional regulat 40.6 47 0.0016 26.5 5.5 39 217-258 16-55 (162)
151 3k69_A Putative transcription 40.3 32 0.0011 28.4 4.5 40 216-258 17-59 (162)
152 1xmk_A Double-stranded RNA-spe 40.1 60 0.002 24.3 5.6 43 213-258 13-57 (79)
153 2cg4_A Regulatory protein ASNC 40.1 40 0.0014 26.6 4.9 40 216-258 13-53 (152)
154 2cyy_A Putative HTH-type trans 37.9 64 0.0022 25.4 5.9 40 216-258 12-52 (151)
155 3lgb_A DNA primase large subun 37.6 24 0.00081 31.1 3.4 34 223-256 119-152 (194)
156 2vn2_A DNAD, chromosome replic 37.0 28 0.00095 27.5 3.5 30 225-257 52-81 (128)
157 1hsj_A Fusion protein consisti 36.8 28 0.00095 32.3 4.0 40 215-257 408-450 (487)
158 2b0l_A GTP-sensing transcripti 36.5 39 0.0013 25.9 4.2 42 214-258 31-74 (102)
159 3hrs_A Metalloregulator SCAR; 36.3 51 0.0017 28.0 5.3 44 213-259 7-52 (214)
160 2fxa_A Protease production reg 36.2 36 0.0012 28.6 4.3 39 216-257 53-92 (207)
161 4ham_A LMO2241 protein; struct 35.6 39 0.0013 26.6 4.2 33 223-258 37-69 (134)
162 1x4q_A U4/U6 small nuclear rib 35.6 1.3E+02 0.0044 23.1 7.0 68 183-272 8-75 (92)
163 2ia0_A Putative HTH-type trans 35.3 58 0.002 26.7 5.3 39 217-258 23-62 (171)
164 2k6x_A Sigma-A, RNA polymerase 34.0 46 0.0016 24.0 4.0 32 225-256 24-57 (72)
165 2qq9_A Diphtheria toxin repres 33.4 69 0.0023 27.3 5.7 43 213-258 11-55 (226)
166 3by6_A Predicted transcription 33.2 1.1E+02 0.0036 24.0 6.4 30 226-258 37-66 (126)
167 1j5y_A Transcriptional regulat 33.0 71 0.0024 26.4 5.6 41 214-257 24-67 (187)
168 2nn4_A Hypothetical protein YQ 32.7 1E+02 0.0035 23.1 5.7 44 224-267 2-54 (72)
169 2dbb_A Putative HTH-type trans 32.6 55 0.0019 25.7 4.6 40 216-258 14-54 (151)
170 2e1c_A Putative HTH-type trans 32.0 87 0.003 25.7 5.9 40 216-258 32-72 (171)
171 1qjt_A EH1, epidermal growth f 30.9 75 0.0026 23.5 4.9 63 213-275 13-80 (99)
172 1eh2_A EPS15; calcium binding, 30.4 76 0.0026 24.1 5.0 50 223-272 29-80 (106)
173 2zc2_A DNAD-like replication p 30.4 1.5E+02 0.005 21.1 7.1 49 223-272 16-67 (78)
174 2ek5_A Predicted transcription 30.2 98 0.0034 24.4 5.7 30 226-258 30-59 (129)
175 3l9q_A DNA primase large subun 30.1 37 0.0013 29.8 3.4 35 222-256 117-151 (195)
176 4ev0_A Transcription regulator 29.6 1.2E+02 0.0043 24.0 6.4 46 210-258 140-194 (216)
177 1ft9_A Carbon monoxide oxidati 28.3 1.5E+02 0.005 24.0 6.6 31 225-258 164-194 (222)
178 3i4p_A Transcriptional regulat 28.2 1.1E+02 0.0038 24.5 5.9 41 215-258 7-48 (162)
179 3b73_A PHIH1 repressor-like pr 28.2 1E+02 0.0035 24.2 5.4 45 214-259 16-61 (111)
180 2w48_A Sorbitol operon regulat 27.7 99 0.0034 27.6 5.9 43 213-258 10-52 (315)
181 2co5_A Viral protein F93; vira 27.6 33 0.0011 26.3 2.4 43 216-258 14-61 (99)
182 2vkl_A RV0948C/MT0975; helical 27.5 1.1E+02 0.0039 23.0 5.4 59 211-270 23-84 (90)
183 2lnb_A Z-DNA-binding protein 1 27.2 1.8E+02 0.0061 22.3 6.3 42 213-257 21-64 (80)
184 1p4x_A Staphylococcal accessor 26.8 48 0.0016 29.2 3.6 40 215-257 38-80 (250)
185 2qen_A Walker-type ATPase; unk 26.5 1.2E+02 0.0042 25.8 6.2 46 213-258 284-331 (350)
186 1r7j_A Conserved hypothetical 26.4 1.1E+02 0.0037 23.0 5.1 40 215-258 12-51 (95)
187 2keb_A DNA polymerase subunit 26.4 1.3E+02 0.0043 24.0 5.6 51 221-272 22-74 (101)
188 2wte_A CSA3; antiviral protein 26.1 96 0.0033 27.3 5.5 36 221-259 163-198 (244)
189 1mkm_A ICLR transcriptional re 25.9 89 0.003 26.8 5.1 39 217-258 14-54 (249)
190 3lay_A Zinc resistance-associa 25.8 2.1E+02 0.0072 24.3 7.4 29 227-255 98-126 (175)
191 2jq6_A EH domain-containing pr 25.2 70 0.0024 26.0 4.1 59 214-272 54-116 (139)
192 2xvy_A Chelatase, putative; me 25.1 31 0.0011 30.0 2.1 36 221-256 44-79 (269)
193 2o0y_A Transcriptional regulat 24.9 1.3E+02 0.0045 26.1 6.0 44 211-257 20-68 (260)
194 1fi6_A EH domain protein REPS1 24.8 53 0.0018 23.6 3.0 47 225-271 26-74 (92)
195 3dv8_A Transcriptional regulat 24.5 1.3E+02 0.0043 24.0 5.5 32 224-258 169-200 (220)
196 2g7u_A Transcriptional regulat 24.5 1.4E+02 0.0047 25.8 6.1 39 217-258 20-60 (257)
197 2pi2_A Replication protein A 3 24.4 16 0.00055 32.7 0.0 50 212-263 208-265 (270)
198 1c07_A Protein (epidermal grow 24.2 86 0.0029 22.7 4.1 58 214-271 13-75 (95)
199 3iwz_A CAP-like, catabolite ac 23.8 79 0.0027 25.4 4.2 31 225-258 188-218 (230)
200 1q1h_A TFE, transcription fact 23.7 94 0.0032 23.0 4.3 41 215-258 22-64 (110)
201 1lva_A Selenocysteine-specific 23.7 1.8E+02 0.006 25.4 6.7 47 210-257 65-119 (258)
202 4e2i_2 DNA polymerase alpha su 23.6 1.6E+02 0.0055 22.3 5.5 47 225-272 3-51 (78)
203 2do5_A Splicing factor 3B subu 23.5 29 0.00099 24.8 1.2 32 223-254 9-41 (58)
204 1v4r_A Transcriptional repress 23.1 21 0.0007 26.6 0.4 30 226-258 37-66 (102)
205 2xrn_A HTH-type transcriptiona 22.1 95 0.0032 26.6 4.5 38 217-257 12-51 (241)
206 3edp_A LIN2111 protein; APC883 22.0 1.7E+02 0.0057 25.1 6.1 31 225-258 34-64 (236)
207 3g2b_A Coenzyme PQQ synthesis 21.8 79 0.0027 24.1 3.5 40 219-258 50-94 (95)
208 3ryp_A Catabolite gene activat 21.7 94 0.0032 24.6 4.2 32 224-258 167-198 (210)
209 2g3q_A Protein YBL047C; endocy 21.6 1.7E+02 0.0057 18.7 4.7 36 228-268 5-40 (43)
210 1bm9_A RTP, TER, replication t 21.4 89 0.003 25.4 3.9 46 213-258 20-71 (122)
211 3eet_A Putative GNTR-family tr 21.4 1.8E+02 0.0062 25.5 6.4 33 223-258 52-84 (272)
212 3e97_A Transcriptional regulat 21.3 1.5E+02 0.0052 23.9 5.4 31 225-258 176-206 (231)
213 2pmy_A RAS and EF-hand domain- 21.0 1E+02 0.0035 21.6 3.9 44 224-267 43-88 (91)
214 2cos_A Serine/threonine protei 21.0 62 0.0021 23.1 2.5 30 229-258 11-52 (54)
215 3h5n_A MCCB protein; ubiquitin 20.9 48 0.0016 30.6 2.5 33 223-258 50-82 (353)
216 2oz6_A Virulence factor regula 20.5 1E+02 0.0034 24.3 4.1 31 225-258 165-195 (207)
217 2kn2_A Calmodulin; S MAPK phos 20.5 1.7E+02 0.0057 20.1 4.9 48 224-271 25-76 (92)
218 2fmy_A COOA, carbon monoxide o 20.2 1.9E+02 0.0065 23.1 5.8 32 224-258 167-198 (220)
No 1
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=99.97 E-value=2.9e-30 Score=230.22 Aligned_cols=127 Identities=23% Similarity=0.306 Sum_probs=118.6
Q ss_pred cchhhccCcccccceEEecCCccchhh--hHHHHhcccCCCCcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 023264 142 SHKKFQNHNRMTNNNILLDAAKQEFGE--EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKL 219 (285)
Q Consensus 142 ~~~~~k~~~~r~~~NIyiDg~efafsv--dvlik~~L~kG~~~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~l 219 (285)
.|+. ++++++| |||||| +|+|+| +++++|+|.+| ++||++++++|.. . +...+|+++||+|
T Consensus 8 ~i~~-~k~k~r~--~I~ld~-~~~f~v~~~~l~~~~L~kg---~el~~e~~~~i~~------~----~~~~~a~~~Al~~ 70 (221)
T 3d5l_A 8 KIEA-QKRKGRY--NIYLDG-KYAFPVAESVLIQFRLMKG---TELDEKQIAAIAT------A----DQQAKAYSRMLDY 70 (221)
T ss_dssp EEEE-CSSTTEE--EEEETT-EEEEEEEHHHHHHTTCCTT---CEECHHHHHHHHH------H----HHHHHHHHHHHHH
T ss_pred EEEE-ccCCCeE--EEEEcC-CeeEEeeHHHHHHcCCcCC---CCCCHHHHHHHHH------h----HHHHHHHHHHHHH
Confidence 3455 6778898 999999 999999 99999999999 9999999999982 2 3568999999999
Q ss_pred HhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW 285 (285)
Q Consensus 220 LS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL 285 (285)
|++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++||+++++.++|||++|+++|
T Consensus 71 Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL 136 (221)
T 3d5l_A 71 LSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHL 136 (221)
T ss_dssp HTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred hccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988899999999986
No 2
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=99.87 E-value=1.2e-22 Score=175.68 Aligned_cols=93 Identities=28% Similarity=0.371 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264 183 FEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262 (285)
Q Consensus 183 ~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY 262 (285)
||||++++++|.. + +...+|+++||+||++|+||+.||++||.++|+++++|+.||++|++.|||||.+|
T Consensus 1 ~el~~e~~~~i~~------~----~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 1 MSLDENLIEEIKL------A----DDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp ------------C------H----HHHHHHHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred CcCCHHHHHHHHH------H----HHHHHHHHHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 6899999999982 2 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcchHHHhccC
Q 023264 263 AESYSRSRWSSASWGPRRIKQGW 285 (285)
Q Consensus 263 AesyVrsr~~~k~kGprrIrqEL 285 (285)
|++||+++++.++|||++|+++|
T Consensus 71 A~~~vr~~~~~~~~G~~~I~~eL 93 (177)
T 3e3v_A 71 AESYVRTMMNTSDKGPKVIKLNL 93 (177)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHH
Confidence 99999999987789999999987
No 3
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.1e-19 Score=155.09 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264 207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW 285 (285)
Q Consensus 207 ~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL 285 (285)
.+...|+++||+||++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++||++++. ++|||++|+++|
T Consensus 14 ~~~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G~~~I~~eL 91 (162)
T 3dfg_A 14 FKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYGPLHIRAEL 91 (162)
T ss_dssp ---CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-ccccHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999997 799999999987
No 4
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=99.78 E-value=5.1e-19 Score=150.12 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHhcC-----C-----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcch
Q 023264 209 RQDAENLAVKLLATRAFTAVEMRKKLNGK-----K-----FPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGP 278 (285)
Q Consensus 209 ~~kA~~~AL~lLS~RdrS~~ELr~KL~~K-----g-----~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGp 278 (285)
..+|+++||+||++|+||+.||++||.++ | +++++|+.||++|++.|||||.+||++||+++++ ++|||
T Consensus 4 ~~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~-~g~G~ 82 (159)
T 3c1d_A 4 YARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR-KGYGP 82 (159)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH-TTCCH
T ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh-CCccH
Confidence 47899999999999999999999999996 8 9999999999999999999999999999999997 78999
Q ss_pred HHHhccC
Q 023264 279 RRIKQGW 285 (285)
Q Consensus 279 rrIrqEL 285 (285)
++|+++|
T Consensus 83 ~~I~~eL 89 (159)
T 3c1d_A 83 ARIRQEL 89 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 5
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.67 E-value=0.18 Score=42.03 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264 185 EPQEVAEEMKILQQKDFYLQA--AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262 (285)
Q Consensus 185 Ldee~leeI~~~~q~~~~eq~--~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY 262 (285)
.+++.++++.. ...+. .+...-|..++-..+. +.++..-|++.|++||++++.|+.+++.+.. |...-
T Consensus 44 ~~~~~i~~vl~-----~l~~~g~ldD~rfA~~~v~~~~~-~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~----d~~~~ 113 (159)
T 3c1d_A 44 ATAEDYERVIA-----WCHEHGYLDDSRFVARFIASRSR-KGYGPARIRQELNQKGISREATEKAMREADI----DWAAL 113 (159)
T ss_dssp CCHHHHHHHHH-----HHHHTTSCCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCC----CHHHH
T ss_pred CCHHHHHHHHH-----HHHHcCCcCHHHHHHHHHHHHHh-CCccHHHHHHHHHHcCCCHHHHHHHHHHcCH----hHHHH
Confidence 57777777662 11111 1123344444444444 5689999999999999999999999988743 66777
Q ss_pred HHHHHHhhhh
Q 023264 263 AESYSRSRWS 272 (285)
Q Consensus 263 AesyVrsr~~ 272 (285)
|..+++.++.
T Consensus 114 a~~l~~kk~~ 123 (159)
T 3c1d_A 114 ARDQATRKYG 123 (159)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 8787776654
No 6
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=93.16 E-value=0.15 Score=42.80 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~ 272 (285)
-|..++-..+. +.++..-|++.|.+||++++.|+.+++.+. .|...-|...++.+..
T Consensus 69 fA~~~v~~~~~-~~~G~~~I~~eL~~KGI~~~~I~~al~~~~----~de~e~a~~l~~Kk~~ 125 (162)
T 3dfg_A 69 FAASVVRNRAS-SGYGPLHIRAELGTHGLDSDAVSAAMATFE----GDWTENALDLIRRRFG 125 (162)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHHTTCCHHHHHHHHTTCC----SCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-ccccHHHHHHHHHHcCCCHHHHHHHHHhCc----HhHHHHHHHHHHHhcC
Confidence 34444444444 578999999999999999999999998763 3666777777776654
No 7
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=89.72 E-value=3.4 Score=34.98 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHH
Q 023264 184 EEPQEVAEEMKILQQKDFYLQA--AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD 250 (285)
Q Consensus 184 ELdee~leeI~~~~q~~~~eq~--~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIer 250 (285)
..+++.++++.. ...+. .+...-|...+-..+....++..-|++.|++||++++.|+.+++.
T Consensus 46 g~~~~~ie~vl~-----~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~ 109 (177)
T 3e3v_A 46 DIHEDYISEIIN-----KLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALIL 109 (177)
T ss_dssp TCCHHHHHHHHH-----HHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356777776662 11111 123345555555566666799999999999999999999999974
No 8
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=89.26 E-value=0.75 Score=40.38 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 210 ~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~ 272 (285)
.-|...+-..+..+.++..-|++.|++||++++.|+.+++.+.+ -|...-|...++.++.
T Consensus 112 rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~---~~e~e~a~~l~~Kk~~ 171 (221)
T 3d5l_A 112 AYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTP---EVQAELAKKLALKLFR 171 (221)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCH---HHHHHHHHHHHHHHHh
Confidence 44555555566667899999999999999999999999886511 0112334555555543
No 9
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=84.00 E-value=2 Score=30.95 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=38.2
Q ss_pred HHHHHHHhh---ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~---RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
...|.+|.. ...|..||.+.|.++ +++...|-..|+.|++.|+|.
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 455667765 468999999999877 789999999999999999984
No 10
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=80.89 E-value=3.7 Score=30.38 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
....|.+| ....|..||.+.| |++...|-..|..|++.|+|.-
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l---~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTL---SLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 34577788 7889999999999 7999999999999999999953
No 11
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=80.82 E-value=3.6 Score=29.82 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhc-cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~R-drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.....|.+|... ..|..||.+.| |++...|...|..|++.|||.
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT---GLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 345567778776 78999999999 699999999999999999994
No 12
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.66 E-value=3.4 Score=29.43 Aligned_cols=43 Identities=14% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
....|.+|+. ...|-.||.+.| |++...|...|..|++.|||.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~l---glsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKC---QVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHH---CSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEe
Confidence 3457778875 468999999988 689999999999999999984
No 13
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=80.64 E-value=2.8 Score=32.23 Aligned_cols=45 Identities=4% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHhhccccHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGK-KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~K-g~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.+. +.++..|-.+|.+|++.|||.
T Consensus 12 ~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~ 57 (108)
T 3l7w_A 12 YLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLS 57 (108)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeE
Confidence 457889999999999999999754 789999999999999999994
No 14
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=80.44 E-value=2.2 Score=34.38 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+++.+++||-++|+..||..+|.+.|..+...+.+-.-|.+-..++
T Consensus 13 lReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~ 59 (104)
T 2doa_A 13 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMS 59 (104)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 56889999999999999999999999999888887777777766663
No 15
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.04 E-value=3.5 Score=30.43 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..-..+.+|...+.|..||.+.| |++...|-.-|..|++.|+|.
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKL---QLSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 34567888988899999999999 799999999999999999984
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=79.61 E-value=3 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=36.1
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|...+.|..||.+.| |++...|-.+|++|++.|||.
T Consensus 42 ~iL~~l~~~~~t~~eLa~~l---~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 42 HILMLLSEESLTNSELARRL---NVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp HHHHHHTTCCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeE
Confidence 45567777779999999999 699999999999999999994
No 17
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=79.41 E-value=2.1 Score=35.15 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcC-----CCCHHHHHHHHHHHHHCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGK-----KFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~K-----g~~ee~Ie~VIerLee~GyL 257 (285)
.-..|.+|+..+.+-.||.+.|.+. +.++..|-.+|.+|++.|||
T Consensus 43 ~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI 92 (145)
T 1xma_A 43 DTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYI 92 (145)
T ss_dssp HHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCE
Confidence 3556778888899999999999754 68999999999999999999
No 18
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.42 E-value=4.1 Score=30.48 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.....|.+|...+.|..||.+.| |++...|-..|..|++.|||.
T Consensus 22 ~r~~IL~~L~~~~~~~~ela~~l---~is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 22 TRWEILTELGRADQSASSLATRL---PVSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHS---SSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCee
Confidence 34567777877889999999988 799999999999999999995
No 19
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=78.21 E-value=3.8 Score=32.33 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=39.7
Q ss_pred HHHHHHHhhccccHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~K---g~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.+. +.++..|-.+|.+|++.|||.
T Consensus 16 ~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~ 63 (116)
T 3hhh_A 16 GLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI 63 (116)
T ss_dssp HHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 456889999999999999999864 468999999999999999994
No 20
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=78.19 E-value=3.3 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCC---CCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKK---FPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg---~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.+.| .++..|-.+|.+|++.|||.
T Consensus 12 ~~IL~~L~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~ 59 (115)
T 4esb_A 12 GCILYIISQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIE 59 (115)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeE
Confidence 3467889999999999999998644 68999999999999999994
No 21
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=78.06 E-value=2.9 Score=32.81 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHhhccccHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNG-----KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~-----Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.+ .+.++..|-.+|.+|++.|||.
T Consensus 15 ~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~ 64 (116)
T 3f8b_A 15 VILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIIS 64 (116)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEE
Confidence 34688999999999999999975 3789999999999999999995
No 22
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=78.06 E-value=5.1 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=34.6
Q ss_pred HHHHh-hccccHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCCCC
Q 023264 217 VKLLA-TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 217 L~lLS-~RdrS~~ELr~KL~~-Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|.+|. ..+.|..||.+.|.. .+++...|-.+|++|++.|||.
T Consensus 15 L~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 15 MKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp HHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 33443 456899999999974 4689999999999999999985
No 23
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.01 E-value=3.5 Score=32.97 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+++.+++||-++++.-||..+|.+.|.++...+.+-.-|.+-+.+
T Consensus 14 lReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~ 59 (100)
T 2e5n_A 14 YRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANL 59 (100)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999987766666666655444
No 24
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=77.82 E-value=4.3 Score=30.23 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
...-..|.+|...+.|..||.+.| |.++..+-.-|..|++.|+|.-
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 23 PVRLMLVCTLVEGEFSVGELEQQI---GIGQPTLSQQLGVLRESGIVET 68 (102)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHH---TCCTTHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 344567888888899999999999 7999999999999999999953
No 25
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=76.69 E-value=3.3 Score=32.68 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHHHHhhccccHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~K---g~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.+. ++++..|-.+|.+|++.|||.
T Consensus 14 ~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~ 61 (117)
T 4esf_A 14 GCVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVN 61 (117)
T ss_dssp HHHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 456889999999999999999865 468999999999999999994
No 26
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=76.60 E-value=2.3 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCC-----CCH-HHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKK-----FPS-HVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg-----~~e-e~Ie~VIerLee~GyLD 258 (285)
..-..|.+|+..+.+-.||.+.|.+.| .++ ..+-.+|.+|++.|||.
T Consensus 14 ~~~~IL~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~ 66 (118)
T 2esh_A 14 LASTILLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLS 66 (118)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeE
Confidence 344567888889999999999998654 678 89999999999999993
No 27
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=76.52 E-value=3.4 Score=33.14 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
..-..|.+|+ .+.+-.||.+.|.+. +.++..|-.+|.+|++.|||.
T Consensus 22 l~~~IL~lL~-~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~ 69 (123)
T 3ri2_A 22 LVMLVLSQLR-EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLA 69 (123)
T ss_dssp HHHHHHHHTT-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445788999 999999999999886 778999999999999999994
No 28
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.18 E-value=6.7 Score=29.46 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcc----ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRA----FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~Rd----rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+..|.+|.... -|..||.++|. .+...|...|.+|++.|+|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg---vsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT---CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHHHCCCEE
Confidence 455666776666 69999999986 89999999999999999984
No 29
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=76.00 E-value=4.6 Score=29.13 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=34.2
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..+.+|.. ...|..||.+.| |++...|...|..|++.|+|.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~l---gvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEAL---AVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 34455543 568999999998 689999999999999999985
No 30
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=75.56 E-value=4.3 Score=29.36 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHHHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.-..|.+|. ....|..||.+.| |++...+-..|.+|++.|||.
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l---~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 345666664 5678999999988 799999999999999999996
No 31
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=74.66 E-value=7.9 Score=27.91 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=34.4
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|. ....|..||.+.| |++...|-.+|..|++.|||.
T Consensus 24 ~il~~l~~~~~~s~~ela~~l---~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIAREL---DLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3445554 3678999999999 799999999999999999994
No 32
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=74.62 E-value=13 Score=29.00 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|.....|..||.+.| |++...|-..|..|++.|||-
T Consensus 49 l~IL~~L~~~~~s~~ela~~l---gis~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 49 LRLLSLLARSELCVGDLAQAI---GVSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 457778887789999999999 799999999999999999985
No 33
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.59 E-value=7.4 Score=29.32 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..-..|.+|+....|..||.+.| |++...+-..|..|++.|+|.
T Consensus 27 ~r~~IL~~L~~~~~~~~ela~~l---~is~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQL---NLSQSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 34567778887888999999999 699999999999999999985
No 34
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=74.48 E-value=5.5 Score=30.29 Aligned_cols=42 Identities=7% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHHHHhhcc---ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~Rd---rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|...+ .|..||.+.| +++...|-.+|++|++.|||.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l---~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEF---SIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHH---CCCcchHHHHHHHHHHCCCEE
Confidence 34566666654 7999999998 689999999999999999993
No 35
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=73.84 E-value=11 Score=26.84 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHh---hccccHHHHHHHHhcCCCCHHHHHHHHHH
Q 023264 210 QDAENLAVKLLA---TRAFTAVEMRKKLNGKKFPSHVIEAVITD 250 (285)
Q Consensus 210 ~kA~~~AL~lLS---~RdrS~~ELr~KL~~Kg~~ee~Ie~VIer 250 (285)
....+.|.++|. -+.-+...=+..|+.||.++++|++++.+
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 345678888886 46667788889999999999999999976
No 36
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=73.14 E-value=5.5 Score=30.67 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|...+-|..||.+.| |++...|-.+|++|++.|||.
T Consensus 40 ~~iL~~l~~~~~~~~~la~~l---~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 40 FSILKATSEEPRSMVYLANRY---FVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHHHSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 456677776666999999998 689999999999999999984
No 37
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=73.12 E-value=5.6 Score=32.16 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..|.....+..||.+.| |++...+-..|.+|++.|||.
T Consensus 28 ~IL~~L~~g~~~~~eLa~~l---gis~~tls~~L~~Le~~GlI~ 68 (146)
T 2f2e_A 28 LIVRDAFEGLTRFGEFQKSL---GLAKNILAARLRNLVEHGVMV 68 (146)
T ss_dssp HHHHHHHTTCCSHHHHHHHH---CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 35666667789999999998 899999999999999999984
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=72.94 E-value=5.7 Score=30.30 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|... ..|..||.+.| +++...+-.+|++|++.|||.
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKAL---QRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEe
Confidence 4556667664 78999999998 589999999999999999994
No 39
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=72.79 E-value=4.4 Score=30.89 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=38.2
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
....|.+|...+.|..||.+.| |+++..|-..|..|++.|+|.
T Consensus 27 r~~IL~~L~~~~~s~~eLa~~l---gis~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 27 RLQILDLLAQGERAVEAIATAT---GMNLTTASANLQALKSGGLVE 69 (108)
T ss_dssp THHHHHHHTTCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 3467778888889999999998 699999999999999999984
No 40
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=72.74 E-value=4.1 Score=31.54 Aligned_cols=36 Identities=3% Similarity=0.162 Sum_probs=32.0
Q ss_pred ccccHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~-Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.-|..||.+.|.. ++.+...|-.+|++|++.|||.
T Consensus 48 ~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 48 GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 46899999999975 4788999999999999999984
No 41
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=71.94 E-value=5.7 Score=30.94 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHHHHHhh----ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT----RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~----RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|+. ...|..||.+.+ |++...+.+++..|++.|||.
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~---~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTN---NLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceE
Confidence 35556665 357999999877 799999999999999999995
No 42
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=71.63 E-value=5.9 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.....|..||.+.| |++...|-.+|.+|++.|||.
T Consensus 41 ~iL~~l~~~~~~~~ela~~l---~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 41 LVLRATSDGPKTMAYLANRY---FVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCcCHHHHHHHh---CCCchhHHHHHHHHHHCCCEE
Confidence 34555656778999999987 689999999999999999994
No 43
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.10 E-value=4.9 Score=30.75 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.....|..||.+.|. |++...+-..|.+|++.|||.
T Consensus 26 ~IL~~L~~~~~~~~eLa~~l~--~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 26 SLMDELFQGTKRNGELMRALD--GITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp HHHHHHHHSCBCHHHHHHHST--TCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCCEE
Confidence 456677777899999999884 799999999999999999984
No 44
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=71.08 E-value=4.7 Score=31.63 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHhhccccHHHHHHHHhc----CCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~----Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|+..+.+-.||.+.|.+ .+.++..|-.+|.+|++.|||.
T Consensus 26 ~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~ 73 (115)
T 2dql_A 26 YILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAIT 73 (115)
T ss_dssp HHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEE
Confidence 3688999999999999999986 3589999999999999999984
No 45
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=71.01 E-value=9.4 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~-Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-+-|..||.+.|.. ++++...|-.+|++|++.|||.
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 23 KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 46899999999974 5789999999999999999984
No 46
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=70.87 E-value=6.1 Score=29.97 Aligned_cols=43 Identities=12% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|..|...+.+..||.+.|. |+++..+-..|.+|++.|||.
T Consensus 17 ~~IL~~L~~~~~~~~eLa~~l~--~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 17 XVILXHLTHGKKRTSELKRLMP--NITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp HHHHHHHTTCCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHCCCEE
Confidence 3466777777899999998873 799999999999999999995
No 47
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=70.61 E-value=5.8 Score=30.04 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..|...+.+..||.+.|. |+++..+-..|.+|++.|||.
T Consensus 29 ~IL~~L~~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 29 LIIFQINRRIIRYGELKRAIP--GISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp HHHHHHTTSCEEHHHHHHHST--TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCcCHHHHHHHcc--cCCHHHHHHHHHHHHHCCCEE
Confidence 456677777899999999884 699999999999999999994
No 48
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=70.30 E-value=9.7 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHHHhh--ccccHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLAT--RAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~--RdrS~~ELr~KL~~-Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...|.+|.. ..-|..||.+.|.. ++++...|-.+|++|++.|||.
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVL 59 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEE
Confidence 345556654 57899999999974 4789999999999999999984
No 49
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=70.04 E-value=2.5 Score=33.40 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~K---g~~ee~Ie~VIerLee~GyLD 258 (285)
.-..|.+|+..+.+-.||.+.|.+. .+++..|-.+|.+|++.|||.
T Consensus 16 ~~~IL~lL~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~ 64 (117)
T 3elk_A 16 TLYILKELVKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVI 64 (117)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4557889999999999999999864 378899999999999999995
No 50
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=69.95 E-value=8.9 Score=27.72 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 218 KLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 218 ~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.++. ....|..||.+.| |++...|-..|..|++.|||.
T Consensus 29 ~l~~~~~~~t~~ela~~l---~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIF---KLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHCSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 3444 5678999999988 799999999999999999994
No 51
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=69.84 E-value=9.1 Score=28.04 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.5
Q ss_pred HHHHHhh-ccccHHHHHHHH-hcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKL-NGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL-~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| ..-+++...+-.+|++|++.|||.
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 4445544 468899997777 445899999999999999999994
No 52
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=67.76 E-value=9.1 Score=31.74 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=39.6
Q ss_pred HHHHHHHhhccccHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNG-----KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~-----Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|+..+.+-.||.+.|.. .+.+...|-.+|.+|++.|||.
T Consensus 5 ~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~ 54 (179)
T 1yg2_A 5 HVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVT 54 (179)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeE
Confidence 35678888899999999999974 3689999999999999999995
No 53
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=67.69 E-value=9.6 Score=28.75 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |++...|-.+|++|++.|||.
T Consensus 34 iL~~l~~~~~~~~~ela~~l---~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 34 CLLRIHREPGIKQDELATFF---HVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHHHHHHSTTCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3444443 567999999998 689999999999999999994
No 54
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=67.58 E-value=9.2 Score=30.41 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=38.4
Q ss_pred HHHHHHHHhh---ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~---RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
+...|.+|.. ...|..||.+.|++. +++...|-.+|+.|.+.|+|.
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455666754 568999999999887 588999999999999999984
No 55
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=67.45 E-value=11 Score=29.40 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHhhcc---ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~Rd---rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...|..|...+ .|..||.+.| +.+...|-..|++|++.|||.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l---~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSL---KLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 44555665443 5999999999 489999999999999999984
No 56
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=66.71 E-value=7.8 Score=28.49 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=35.5
Q ss_pred HHHHHHHhhcc----ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRA----FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~Rd----rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...|.+|.... .|..||.++|. .+...|...|.+|++.|+|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lg---vs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHC---CCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHHHCCCEE
Confidence 45666777766 68999999996 89999999999999999983
No 57
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=66.17 E-value=11 Score=28.54 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=34.8
Q ss_pred HHHHHHH--hhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLL--ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lL--S~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..++.+| +..+.|..||.+.| |++...+-.+|+.|++.|||.
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l---~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEEL---KISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3444454 45678999999999 689999999999999999993
No 58
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=66.07 E-value=9.6 Score=29.22 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=33.3
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...+-.+|++|++.|||.
T Consensus 42 iL~~l~~~~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 42 VLEGIEANEPISQKEIALWT---KKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHSSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHH---CCCHhhHHHHHHHHHHCCCee
Confidence 3444443 567999999998 689999999999999999994
No 59
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=66.03 E-value=12 Score=29.00 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=37.8
Q ss_pred HHHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 214 NLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 214 ~~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
-..|.+|. ..+.|..||.+.| |++...+-..|..|++.|||.-
T Consensus 45 l~IL~~L~~~~~~s~~eLa~~l---~is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 45 AKITYALCQDEELCVCDIANIL---GVTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHHHHHSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 45777887 6789999999999 6999999999999999999953
No 60
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.81 E-value=9.4 Score=29.02 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHHHHH--hhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLL--ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lL--S~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+| .....|..||.+.| |++...|-.+|.+|++.|||.
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l---~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSV---GVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCee
Confidence 345555 34567999999988 699999999999999999994
No 61
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=65.79 E-value=4.5 Score=32.29 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=33.2
Q ss_pred HHHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|... ..|..||.+.| +++...|-.+|++|++.|||.
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRL---ISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEe
Confidence 4466677664 78999999987 689999999999999999995
No 62
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=65.72 E-value=9.7 Score=29.48 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=34.8
Q ss_pred HHHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|.. ...|..||.+.| +++...|-.+|++|++.|||.
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRL---IITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345666654 457999999998 689999999999999999994
No 63
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=64.66 E-value=8.7 Score=28.03 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHCCCC
Q 023264 223 RAFTAVEMRKKLNGK-------------KFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 223 RdrS~~ELr~KL~~K-------------g~~ee~Ie~VIerLee~GyL 257 (285)
.+-|+.+|-++++.. |.+.+.|-.++.+|++.|+|
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 356778888887765 58999999999999999987
No 64
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=64.30 E-value=7.7 Score=29.85 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...-..|.+|...+.|..||.+.| |++...|-.-|..|++.|+|.
T Consensus 18 ~~R~~Il~~L~~~~~~~~eLa~~l---~is~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPF---DMALPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTC---CSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHh---CcCHHHHHHHHHHHHHCCCeE
Confidence 345667888888899999999877 899999999999999999984
No 65
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.23 E-value=8.6 Score=28.20 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHhhc--cccHHHHHHHHhcCCCCHHH-HHHHHHHHHHCCCCC
Q 023264 216 AVKLLATR--AFTAVEMRKKLNGKKFPSHV-IEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~R--drS~~ELr~KL~~Kg~~ee~-Ie~VIerLee~GyLD 258 (285)
.|.+|... ..|..||.+.| +++... +-.+|++|++.|||.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l---~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKAS---GVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHH---CCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCCHHHHHHHH---CCCchHHHHHHHHHHHHCCCee
Confidence 44555554 58999999999 589999 999999999999995
No 66
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=64.23 E-value=12 Score=30.34 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.3
Q ss_pred HHHHHHHHhh---ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~---RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
+...|.+|.. +..|..||.+.|++. +++...|-.+|+.|.+.|+|.
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3455667754 468999999999886 578999999999999999984
No 67
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=64.23 E-value=14 Score=29.20 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=38.1
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
+...|.+|.. ...|..||.+.|++. +++...|-.+|+.|.+.|+|.
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4455666653 467999999999886 688999999999999999984
No 68
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=64.22 E-value=12 Score=28.20 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| +++...|-.+|.+|++.|||.
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l---~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERL---QIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 35555554 567999999988 689999999999999999993
No 69
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=63.89 E-value=8.4 Score=29.61 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=31.5
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. -..|..||.+.| |++...+-.+|++|++.|||.
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQM---CRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH---C---CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCcCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEe
Confidence 45555554 467999999998 689999999999999999994
No 70
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.50 E-value=11 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
......|.+|.....|..||.+.| |++...|...|.+|++.|+|-
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~L---giSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQL---NMEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHS---SSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 345667788888889999999987 599999999999999999983
No 71
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.46 E-value=18 Score=27.59 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=35.4
Q ss_pred HHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|.. ...|..||.+.| |++...|-.+|.+|++.|||.
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l---~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAE---RMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCEe
Confidence 446666664 577999999987 699999999999999999993
No 72
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=63.46 E-value=13 Score=27.29 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=28.2
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.|..||.+.| +++...+-.+|++|++.|||
T Consensus 31 ~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKV---NSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHS---SSCHHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHH---CcCHHHHHHHHHHHHHCcCc
Confidence 7899999987 68999999999999999999
No 73
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=63.34 E-value=12 Score=28.56 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...|-.+|++|++.|||.
T Consensus 34 iL~~l~~~~~~t~~~la~~l---~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELI---KVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCcCcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEE
Confidence 4444543 357999999998 689999999999999999994
No 74
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=63.24 E-value=8.7 Score=29.84 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|.....|..||.+.| |.+...|-.+|++|++.|||-
T Consensus 41 ~~iL~~l~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 41 SHVLNMLSIEALTVGQITEKQ---GVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHSCBCHHHHHHHH---CSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345566667789999999998 589999999999999999996
No 75
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=63.19 E-value=10 Score=28.78 Aligned_cols=43 Identities=7% Similarity=0.220 Sum_probs=37.0
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.-..|.+|.....|..|+.+.| |++...|-..|..|++.|+|.
T Consensus 34 ~~~il~~L~~~~~s~~ela~~l---~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 34 RLMILTQLRNGPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3456677776689999999998 789999999999999999984
No 76
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=63.17 E-value=11 Score=30.17 Aligned_cols=41 Identities=10% Similarity=0.180 Sum_probs=33.9
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|.. ...|..||.+.| |++...|-.+|++|++.|||.
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLL---GVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 34455543 568999999998 699999999999999999993
No 77
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.67 E-value=19 Score=28.78 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhh--ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 211 DAENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 211 kA~~~AL~lLS~--RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
..+...|.+|.. ...|..||.+.|+++ .++...|-.+|+.|.+.|+|.
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 345566777755 568999999999876 578999999999999999984
No 78
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=62.29 E-value=16 Score=29.31 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=37.8
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
+...|.+|.. ...|..||.+.|++. +++...|-.+|+.|.+.|+|.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3445566643 568999999999876 578999999999999999984
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=61.90 E-value=12 Score=30.14 Aligned_cols=41 Identities=10% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|.. ...|..||.+.| +++...|-.+|++|++.|||-
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAI---GIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHH---CCCHhhHHHHHHHHHHCCCEE
Confidence 45556654 458999999998 589999999999999999995
No 80
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=61.73 E-value=12 Score=28.80 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=32.6
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..+.+|. ...-|..||.+.| +.++..|..-|++|++.|+|
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l---~VS~~TIRrDL~~Le~~G~l 46 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARL---QTPQPLIDAMLERMEAMGKV 46 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHT---TCCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 3444554 4567888998887 69999999999999999987
No 81
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=61.56 E-value=7 Score=30.22 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.-..|.+|...+.|..||.+.| |++...+-..|..|++.|||.
T Consensus 23 r~~IL~~L~~~~~~~~eLa~~l---gis~stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 23 RCRILVALLDGVCYPGQLAAHL---GLTRSNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp HHHHHHHHHTTCCSTTTHHHHH---SSCHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceE
Confidence 4567777887889999999998 799999999999999999984
No 82
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=61.11 E-value=14 Score=30.35 Aligned_cols=43 Identities=9% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
--..|.+|.. ...|..||.+.| |++...|-.+|.+|++.|||-
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~ 88 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKM---GTSKQNINRLVANLEKNGYVD 88 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3455667764 468999999998 689999999999999999994
No 83
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.52 E-value=13 Score=28.15 Aligned_cols=41 Identities=7% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| +++...|-.+|.+|++.|||.
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l---~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQA---CILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEE
Confidence 34455544 467999999987 689999999999999999993
No 84
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=60.51 E-value=15 Score=28.10 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=32.7
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...|-.+|.+|++.|||-
T Consensus 47 iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 47 ALQWLLEEGDLTVGELSNKM---YLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCee
Confidence 3444443 467999999988 689999999999999999993
No 85
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=60.50 E-value=21 Score=26.75 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHHHHh---hccccHHHHHHHHhcCCCCHHHHHHHHHHH
Q 023264 212 AENLAVKLLA---TRAFTAVEMRKKLNGKKFPSHVIEAVITDF 251 (285)
Q Consensus 212 A~~~AL~lLS---~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerL 251 (285)
....|.++|. -+.-+..+=+..|+.||.++++|++++.+-
T Consensus 17 li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 17 LIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4567778885 456667788889999999999999999874
No 86
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.05 E-value=16 Score=27.72 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| +++...|..+|.+|++.|||.
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l---~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLL---GVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCee
Confidence 34445543 467999999988 689999999999999999993
No 87
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.99 E-value=16 Score=28.04 Aligned_cols=40 Identities=8% Similarity=0.267 Sum_probs=32.8
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+|.+|.. ...|..||.+.| +++...|-.+|++|++.|||.
T Consensus 45 iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3334433 468999999988 589999999999999999994
No 88
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=59.56 E-value=16 Score=27.94 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|. ....|..||.+.| +++...+-.+|++|++.|||-
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKW---SLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 4455553 3458999999988 689999999999999999994
No 89
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=59.37 E-value=9.3 Score=31.17 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHhhccccHHHHHHHHhc----CCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~----Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|+..+.+-.||.+.|.+ .+.++..|-.+|.+|++.|||.
T Consensus 38 ~IL~lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~ 85 (138)
T 2e1n_A 38 YVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIIS 85 (138)
T ss_dssp HHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 4788999999999999999985 3589999999999999999984
No 90
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=59.12 E-value=14 Score=27.45 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.5
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..+.+|. ...-|..||.+.| +.++..|..-|++|++.|+|
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l---~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTL---NTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHT---TCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 3444554 4567888998887 69999999999999999987
No 91
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=58.92 E-value=15 Score=28.35 Aligned_cols=40 Identities=10% Similarity=0.309 Sum_probs=33.4
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..|.+|.. ...|..||.+.| +++...|-.+|.+|++.|||
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv 81 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERM---EVKPSAVTLMADRLEQKNLI 81 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCE
Confidence 34555553 467999999998 68999999999999999999
No 92
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=58.78 E-value=11 Score=30.13 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=37.4
Q ss_pred HHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|.....+..||.+.|. |+++..+-..|.+|++.|||.
T Consensus 38 l~IL~~L~~g~~~~~eLa~~l~--gis~~tls~~L~~Le~~GlV~ 80 (131)
T 1yyv_A 38 VLILVALRDGTHRFSDLRRXMG--GVSEXMLAQSLQALEQDGFLN 80 (131)
T ss_dssp HHHHHHGGGCCEEHHHHHHHST--TCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCcEE
Confidence 3467778777899999999884 799999999999999999995
No 93
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=58.68 E-value=8 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHhhccccHHHHHHHHhc----CCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~----Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|+..+.+-.||.+.|.+ .+.++..|-.+|.+|++.|||.
T Consensus 48 ~IL~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~ 95 (148)
T 2zfw_A 48 YVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIIS 95 (148)
T ss_dssp HHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEE
Confidence 4678899999999999999986 3588999999999999999984
No 94
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=58.66 E-value=12 Score=28.75 Aligned_cols=42 Identities=2% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|. ....|..||.+.| +++...+-.+|++|++.|||.
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERV---FLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCeE
Confidence 34555665 4567999999998 589999999999999999994
No 95
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=58.62 E-value=15 Score=28.75 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...+-.+|++|++.|||.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYL---KIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 4445543 457999999998 689999999999999999994
No 96
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=58.60 E-value=12 Score=29.49 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=34.1
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|.. -..|..||.+.| |++...|-.+|++|++.|||.
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERS---FIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH---TSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCeE
Confidence 45555554 567999999998 689999999999999999993
No 97
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=58.40 E-value=76 Score=26.06 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHH
Q 023264 182 VFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSL 261 (285)
Q Consensus 182 ~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~r 261 (285)
|++|+++++.+-.. +. ..++-.-.+. |..+--|..==|.-|+.-||+.-....+++.+.+.|+|..-
T Consensus 14 l~~l~d~el~~rar----~L-------A~kIv~pv~e-l~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLLgkG- 80 (121)
T 3kp1_E 14 LANLSDEELQTRFW----EM-------AEKIVDPLLD-LGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLMGKG- 80 (121)
T ss_dssp GTTCCHHHHHHHHH----HH-------HHHHHHHHHH-HHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCGGGC-
T ss_pred HHhCCHHHHHHHHH----HH-------HHHHHHHHHH-HHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHccccccc-
Confidence 48889998875441 11 2233333333 34454566666788999999999999999999999999764
Q ss_pred HHHHHHHhhhhcCCcchHHHhcc
Q 023264 262 YAESYSRSRWSSASWGPRRIKQG 284 (285)
Q Consensus 262 YAesyVrsr~~~k~kGprrIrqE 284 (285)
|-.|+-.-+...+.+|..|..+
T Consensus 81 -Aa~~v~~a~~e~g~s~qeaae~ 102 (121)
T 3kp1_E 81 -AGHIVYKIAKEKNISVREAGLA 102 (121)
T ss_dssp -HHHHHHHHHHHTTCCHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHH
Confidence 5556666666677777766543
No 98
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=58.36 E-value=14 Score=28.75 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|.. ...|..||.+.| |++...|-.+|++|++.|||-
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l---~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLS---LMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345666654 457999999987 699999999999999999994
No 99
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=58.22 E-value=17 Score=28.22 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=33.0
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |.++..+-..+.+|++.|+|.
T Consensus 9 il~~L~~~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKL---GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEe
Confidence 3445543 346999999999 799999999999999999994
No 100
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.09 E-value=17 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=32.6
Q ss_pred HHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|. ....|..||.+.| |++...|..+|.+|++.|||.
T Consensus 43 iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGRLT---AMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp HHHHHHHHSSBCHHHHHHHT---TCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 344443 3468999999987 689999999999999999994
No 101
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=57.95 E-value=17 Score=29.56 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHhh--ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~--RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
-+...|.+|.. ...|..||.+.|++. +++...|-.+|+.|.+.|+|.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556666754 578999999999876 578999999999999999984
No 102
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.94 E-value=12 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=34.2
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|. ....|..||.+.| +++...|-.+|++|++.|||.
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHL---DLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 4455554 4567999999998 689999999999999999994
No 103
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=57.86 E-value=7.3 Score=30.16 Aligned_cols=42 Identities=7% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|... ..|..||.+.| +++...+-.+|++|++.|||.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFF---GRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 4566677664 67999999887 589999999999999999995
No 104
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=57.48 E-value=18 Score=31.06 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..-..|.+|...+.|..||.+.| |.+...+-..|..|++.|||.
T Consensus 16 ~rl~IL~~L~~~~~s~~eLa~~l---~is~stvs~hLk~Le~~GLV~ 59 (202)
T 2p4w_A 16 TRRRILFLLTKRPYFVSELSREL---GVGQKAVLEHLRILEEAGLIE 59 (202)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceE
Confidence 44567778888999999999999 799999999999999999994
No 105
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=57.48 E-value=21 Score=26.53 Aligned_cols=32 Identities=3% Similarity=0.163 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+-|..||.+.| |+++..|..-|..|++.|||
T Consensus 23 ~~psv~EIa~~l---gvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 23 APVKTRDIADAA---GLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp SCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcE
Confidence 367899999998 57999999999999999998
No 106
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=57.42 E-value=17 Score=27.89 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=33.8
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| |++...+-.+|++|++.|||.
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l---~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAAL---QMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCee
Confidence 44555554 467999999988 689999999999999999993
No 107
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.96 E-value=17 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=32.8
Q ss_pred HHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|. ....|..||.+.| +++...|-.+|++|++.|||.
T Consensus 52 iL~~l~~~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERL---YLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEe
Confidence 334443 3567999999988 589999999999999999994
No 108
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=56.28 E-value=19 Score=27.19 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcc-ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRA-FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~Rd-rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...|+..|.--. -|..+|.++| |.+...|..+|-.|++.|||.
T Consensus 17 v~~~i~~L~~~~~~Ta~~IAkkL---g~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 17 VKKEVLSLNTNDYTTAISLSNRL---KINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp HHHHHHTSCTTCEECHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCcchHHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 356677888777 8999999988 588999999999999999983
No 109
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=56.27 E-value=17 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|. ....|..||.+.| |++...|-.+|++|++.|||-
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFA---VVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 3444554 3467999999988 689999999999999999993
No 110
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=55.85 E-value=16 Score=28.81 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|.. ...|..||.+.| |++...|-.+|++|++.|||-
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLG---VMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 35555543 578999999977 689999999999999999994
No 111
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.82 E-value=17 Score=28.33 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| +++...|-.+|++|++.|||.
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFL---STTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 44555554 467999999987 589999999999999999994
No 112
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=55.74 E-value=19 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=33.9
Q ss_pred HHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.+|.+|. ....|..||.+.| +++...|-.+|.+|++.|||.
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRT---AMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 3445554 3568999999988 589999999999999999994
No 113
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=55.60 E-value=21 Score=26.85 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...+-.+|++|++.|||.
T Consensus 39 iL~~l~~~~~~~~~~la~~l---~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVL---SVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCHHHHHHHH---CCChHHHHHHHHHHHHCCCEE
Confidence 3444443 467899999877 689999999999999999993
No 114
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=55.38 E-value=34 Score=26.37 Aligned_cols=43 Identities=5% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHHHh-hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
....+.++. ....|..||.+.| |++...|-.+|.+|++.|||.
T Consensus 10 L~~i~~l~~~~~~~~~~ela~~l---~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 10 IEQIYMLIEEKGYARVSDIAEAL---AVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhcCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 333444443 3567999999987 689999999999999999995
No 115
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=54.50 E-value=14 Score=28.32 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcccc--HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 213 ENLAVKLLATRAFT--AVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 213 ~~~AL~lLS~RdrS--~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
.-..|..|...+.+ ..||.+.|. |+++..+-..|..|++.|+|.=
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~r 75 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIP--GISSTILSRRIKDLIDSGLVER 75 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTST--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHCCCEEE
Confidence 34567788877888 999998774 7999999999999999999953
No 116
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=54.13 E-value=20 Score=29.61 Aligned_cols=46 Identities=7% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcC----CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGK----KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~K----g~~ee~Ie~VIerLee~GyLD 258 (285)
+...|.+|.. +..|..||.+.|+++ .++...|-.+|+.|.+.|+|.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556666755 578999999999876 588999999999999999984
No 117
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=53.03 E-value=21 Score=28.55 Aligned_cols=41 Identities=7% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHHhhccc-cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAF-TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~Rdr-S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+||-+|+.+.- |..||.+.+ ++|+..+++++..|.+.|||.
T Consensus 13 ~~L~~La~~~~~s~~~IA~~~---~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 13 HILSLISMDEKTSSEIIADSV---NTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHHHHTCSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceE
Confidence 35556665422 788888766 699999999999999999984
No 118
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=52.83 E-value=25 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=32.5
Q ss_pred hccccHHHHHHHHhc-CCCCHHHHHHHHHHHHHCCCCC
Q 023264 222 TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 222 ~RdrS~~ELr~KL~~-Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..+.|..||.+.|.. .+++...|-.+|++|++.|||.
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~ 59 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFID 59 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeE
Confidence 467899999999974 4588999999999999999994
No 119
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=52.62 E-value=18 Score=29.17 Aligned_cols=42 Identities=7% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..|.....+-.||.+.|. |+++..+-..|.+|++.|||.
T Consensus 30 ~IL~~L~~g~~rf~eL~~~l~--gIs~~~Ls~~L~~Le~~GLV~ 71 (131)
T 4a5n_A 30 ILFYHMIDGKKRFNEFRRICP--SITQRMLTLQLRELEADGIVH 71 (131)
T ss_dssp HHHHHHTTSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCcCHHHHHHHhc--ccCHHHHHHHHHHHHHCCCEE
Confidence 456667778899999999885 799999999999999999985
No 120
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=52.37 E-value=33 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=30.3
Q ss_pred hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 222 ~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
....|..||.+.| |++...|-.+|.+|++.|||.
T Consensus 29 ~~~~s~~ela~~l---~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 29 GEGAKINRIAKDL---KIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TSCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHh---CCChHHHHHHHHHHHHCCCEE
Confidence 3467999999988 589999999999999999995
No 121
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=52.26 E-value=16 Score=28.22 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=34.2
Q ss_pred HHHHHHHhhc--cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~R--drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.+|.+|... ..|..||.+.|. ++...+-.+|++|++.|||.
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~---i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMG---LDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHT---CCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHC---CCHhHHHHHHHHHHHCCCEE
Confidence 3455666543 349999999985 89999999999999999994
No 122
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=51.92 E-value=24 Score=27.80 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+|.+|... ..|..||.+.| +++...+-.+|++|++.|||
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l---~~~~~tvs~~v~~Le~~Glv 81 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERL---MVHPTSVTNTVDRLVRSGLV 81 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHhCCCE
Confidence 356666543 36899999998 58999999999999999999
No 123
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=51.67 E-value=16 Score=28.07 Aligned_cols=41 Identities=5% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.|. ++...+-.+|++|++.|||.
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~---~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLN---YKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSS---SHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHhccCCCcCHHHHHHHHC---CCHHHHHHHHHHHHHCCCEE
Confidence 45556655 4679999999875 89999999999999999994
No 124
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=51.56 E-value=13 Score=28.24 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| +++...|-.+|.+|++.|||.
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l---~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTEL---ALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHT---TCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEE
Confidence 45556654 467999999988 689999999999999999993
No 125
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=51.34 E-value=9.8 Score=33.04 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=40.4
Q ss_pred HHHHHHHhhccccHHHHHHHHhcC-----CCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAFTAVEMRKKLNGK-----KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~RdrS~~ELr~KL~~K-----g~~ee~Ie~VIerLee~GyLD 258 (285)
...|.+|+..+.+-.||.+.|.+. .+++..|-.+|.+|++.|||.
T Consensus 39 ~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~ 88 (204)
T 3l9f_A 39 DIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKIT 88 (204)
T ss_dssp HHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeE
Confidence 467889999999999999999865 578999999999999999994
No 126
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=50.77 E-value=44 Score=26.19 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 210 QDAENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 210 ~kA~~~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...+...+.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 39 ~~~~~~i~~~l~~~~~~~~~~la~~l---~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 39 DDYVELISDLIREVGEARQVDMAARL---GVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHh---CcCHHHHHHHHHHHHHCCCEE
Confidence 3344555555543 568999999887 589999999999999999985
No 127
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=50.25 E-value=42 Score=25.64 Aligned_cols=30 Identities=3% Similarity=0.159 Sum_probs=27.5
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 226 TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 226 S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|+.||.+.| |++...|.+++..|++.|+|.
T Consensus 35 s~~~La~~~---~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 35 SIRKISTEY---QINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 899999887 699999999999999999984
No 128
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=50.07 E-value=26 Score=27.80 Aligned_cols=40 Identities=10% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHHHhhc--cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~R--drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+|.+|... ..+..||.+.| +++...+-.+|++|++.|||
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l---~~~~~tvs~~v~~Le~~GlV 76 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAI---GIEQPSLVRTLDQLEEKGLI 76 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHhCCCe
Confidence 466677653 35668999888 58999999999999999998
No 129
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=50.02 E-value=17 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...-..|.+|...+.|..||.+.| |++...|-.-|..|++.|||.
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~l---gls~stvs~hL~~L~~aGlV~ 102 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHF---PASRSAISQHLRVLTEAGLVT 102 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTS---SSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 455678889998899999999877 799999999999999999995
No 130
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.10 E-value=41 Score=26.33 Aligned_cols=41 Identities=17% Similarity=0.424 Sum_probs=34.3
Q ss_pred HHHHHHhhc-cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~R-drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|... ..|..||.+.| |.++..+-..|.+|++.|+|.
T Consensus 7 ~il~~L~~~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREI---RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 455566543 47999999998 689999999999999999996
No 131
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=49.08 E-value=25 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHHHhhccccH--HHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTA--VEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~--~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+-.+|+.|.....|. .||.+.| +++...+-.+|.+|++.|||.
T Consensus 11 ~L~~L~~l~~~~~~~~~~~La~~l---~vs~~tvs~~l~~Le~~GlV~ 55 (230)
T 1fx7_A 11 YLRTIYDLEEEGVTPLRARIAERL---DQSGPTVSQTVSRMERDGLLR 55 (230)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 445666665545555 8999988 689999999999999999995
No 132
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=48.51 E-value=31 Score=27.72 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
++|-+|+. ...|..||.+.+ +.++..+.+++..|.+.|||.
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~---~i~~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESV---NTNPVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 34445554 357888998877 699999999999999999986
No 133
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=47.94 E-value=17 Score=27.76 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...|..||.+.| +++...|-.+|.+|++.|||-
T Consensus 53 ~~~~~~~la~~l---~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 53 ETLTVKKMGEQL---YLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp SEEEHHHHHHTT---TCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHH---CCCcCcHHHHHHHHHHCCCEE
Confidence 467899999877 799999999999999999993
No 134
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=47.74 E-value=55 Score=25.18 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhh--------ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 209 RQDAENLAVKLLAT--------RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 209 ~~kA~~~AL~lLS~--------RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+.+.+.++..|+. .-.+..||+.++. ..+++..+..+|+.|.+.|.|
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~-~~~~~~~~~~ll~~l~~~g~l 119 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF-SRLPARVYQALLEEWSREGRL 119 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC-TTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhc-ccCCHHHHHHHHHHHHHCCCE
Confidence 34445556666653 6678999999997 346999999999999999865
No 135
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=47.22 E-value=32 Score=27.17 Aligned_cols=40 Identities=10% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHhhcc------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATRA------FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~Rd------rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+|.+|...+ .|..||.+.|. ++...+-.+|++|++.|||
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~~l~---~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAARIG---VERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HHHHHHHC---------CHHHHHHHHT---CCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHC---CChhhHHHHHHHHHHCCCE
Confidence 3455666554 58889988874 8999999999999999999
No 136
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=47.04 E-value=36 Score=28.80 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
....|.+|.....|..||.+.| |.++..|-.-|.+|++.|+|.
T Consensus 22 ~~~IL~~L~~~~~s~~eLA~~l---glS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 22 RRKILKLLRNKEMTISQLSEIL---GKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3456777777789999999998 689999999999999999984
No 137
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=46.49 E-value=26 Score=28.18 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHhhc----cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLATR----AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~R----drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+|-+|+.. ..|..||.+.+ +.++..+.+++..|...|+|.
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~---~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEEN---NLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCEEE
Confidence 45566643 47899998775 699999999999999999984
No 138
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=46.45 E-value=47 Score=27.60 Aligned_cols=45 Identities=7% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhc--cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 210 QDAENLAVKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 210 ~kA~~~AL~lLS~R--drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.+.++..+.++... +-|..||.+.| |++...+...|..|++.|||
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~l---gl~~~tv~~~l~~Le~~G~i 54 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRF---RITPRGALLHLIALEKKGYI 54 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHc---CCCcHHHHHHHHHHHHCCCE
Confidence 34566666677665 46999999988 57788999999999999998
No 139
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.28 E-value=15 Score=27.55 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| +++...+-.+|.+|++.|||.
T Consensus 38 iL~~l~~~~~~~~~ela~~l---~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENM---GCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHC---SSCCTTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHH---CCChhHHHHHHHHHHHCCCee
Confidence 4445543 457899999876 689999999999999999994
No 140
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=45.51 E-value=31 Score=26.17 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.5
Q ss_pred hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 222 ~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
...-+.+||..++. .+...|..+|.+|++.|||
T Consensus 34 ~~gi~qkeLa~~~~---l~~~tvt~iLk~LE~kglI 66 (91)
T 2dk5_A 34 NKGIWSRDVRYKSN---LPLTEINKILKNLESKKLI 66 (91)
T ss_dssp TTCEEHHHHHHHTT---CCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHC---CCHHHHHHHHHHHHHCCCE
Confidence 44689999998875 8999999999999999998
No 141
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.45 E-value=54 Score=25.55 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=27.7
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-|+.||.+.| |++...|.+++..|++.|||.
T Consensus 38 ps~~~La~~~---~vSr~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 38 PSVREMGVKL---AVNPNTVSRAYQELERAGYIY 68 (125)
T ss_dssp CCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHH---CcCHHHHHHHHHHHHHCCeEE
Confidence 3899999887 689999999999999999974
No 142
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=45.17 E-value=9.8 Score=29.66 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHHHh--hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLA--TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS--~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-..|.+|. ....|..||.+.| |++...+-.+|++|++.|||.
T Consensus 50 ~~iL~~L~~~~~~~~~~ela~~l---~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 50 FDAMAQLARNPDGLSMGKLSGAL---KVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHC---SSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH---CCChhhHHHHHHHHHHCCCEE
Confidence 34666773 3578999999987 689999999999999999993
No 143
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=44.55 E-value=28 Score=30.51 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
|-.|+..| ...-+..+|.++|. +++..+-..|.+|++.|||+=
T Consensus 20 YLk~I~~L-~~~V~~~~LA~~Lg---vS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 20 VLAVIFLL-KEPLGRKQISERLE---LGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHHT---CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-cCCccHHHHHHHhC---CCHHHHHHHHHHHHHCCCEEE
Confidence 34566666 46789999999986 899999999999999999964
No 144
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=44.24 E-value=35 Score=28.27 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHHHHHhh----ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT----RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~----RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+||-+|+. ...|..||.+.+ +.++..+.+++..|.+.|+|.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~---~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDK---NLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCeEE
Confidence 34445654 357999999887 599999999999999999984
No 145
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=43.89 E-value=48 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=33.6
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|.+|.. ...|..||.+.| |.++..+-..|.+|++.|+|.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRA---GLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 34455543 457999999998 689999999999999999993
No 146
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.22 E-value=43 Score=26.91 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=31.6
Q ss_pred cccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 224 AFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 224 drS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
..|..||.+.|++. .++...|-.+|+.|.+.|+|.
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 67999999999987 478999999999999999983
No 147
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=42.24 E-value=55 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=32.5
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |.++..+...|.+|++.|+|.
T Consensus 10 il~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKI---KLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 3444443 357999999998 589999999999999999985
No 148
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=41.95 E-value=9.1 Score=31.00 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHhhcc----ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 214 NLAVKLLATRA----FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 214 ~~AL~lLS~Rd----rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
-..|.+|.... .|..||.+.| +++...|-.+|++|++.|||
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV 116 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALA---AISGPSTSNRIVRLLEKGLI 116 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHC---SCCSGGGSSHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCE
Confidence 44566776654 7999999987 68999999999999999999
No 149
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=41.74 E-value=27 Score=30.89 Aligned_cols=40 Identities=3% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHhhcc---ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~Rd---rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..|.+|...+ .|..||.+.| +++...+-.+|++|++.|||
T Consensus 162 ~vL~~L~~~~~~~~t~~eLa~~l---~i~~~tvt~~v~rLe~~GlV 204 (250)
T 1p4x_A 162 TILAIITSQNKNIVLLKDLIETI---HHKYPQTVRALNNLKKQGYL 204 (250)
T ss_dssp HHHHHHHTTTTCCEEHHHHHHHS---SSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCE
Confidence 4677887764 7999999987 58999999999999999998
No 150
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.60 E-value=47 Score=26.53 Aligned_cols=39 Identities=13% Similarity=0.350 Sum_probs=31.7
Q ss_pred HHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 217 VKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 217 L~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|.+|.. ...|..||.+.| |.++..+-..|.+|++.|+|.
T Consensus 16 l~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 16 LQVLQENGRLTNVELSERV---ALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEe
Confidence 334432 346999999988 589999999999999999985
No 151
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=40.29 E-value=32 Score=28.41 Aligned_cols=40 Identities=13% Similarity=0.350 Sum_probs=32.7
Q ss_pred HHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+|-+|+.. ..|..||.+.+ +.++..+.+++..|...|||.
T Consensus 17 ~l~~La~~~~~~~s~~~IA~~~---~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 17 SILYLDAHRDSKVASRELAQSL---HLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHTTTTSCBCHHHHHHHH---TSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 44456543 46899999887 599999999999999999984
No 152
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=40.11 E-value=60 Score=24.25 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHHHHh-hccccHHHHHHHHhcCCCCHH-HHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSH-VIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS-~RdrS~~ELr~KL~~Kg~~ee-~Ie~VIerLee~GyLD 258 (285)
.++.|.||- ..+.|..||.+.| |++.. .|...|..|++.|+|.
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~L---git~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNI---GLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHH---CGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHc---CCCcHHHHHHHHHHHHHCCCEE
Confidence 445555554 4578999999988 58898 9999999999999997
No 153
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=40.07 E-value=40 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |.++..+-..|.+|++.|+|.
T Consensus 13 il~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQF---GVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHcCCcc
Confidence 3444443 357999999988 689999999999999999985
No 154
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=37.89 E-value=64 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |.++..+-..|.+|++.|+|.
T Consensus 12 il~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKIT---GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHH---CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 3444443 357999999988 689999999999999999984
No 155
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=37.58 E-value=24 Score=31.07 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.6
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL 256 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~Gy 256 (285)
|..+...|+.+|...|++.+.|++|++..+..+|
T Consensus 119 r~~~~~~L~~~L~~~gv~~~~i~~I~~~~~~~~y 152 (194)
T 3lgb_A 119 RDWSHERLSAELRSMKLTQAQIISVLDSCQKGEY 152 (194)
T ss_dssp HHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCh
Confidence 4567888999999999999999999999988765
No 156
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=37.01 E-value=28 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
-|..+|.++| |.++..|..+|++|++.|||
T Consensus 52 ps~~~LA~~l---~~s~~~V~~~l~~Le~kGlI 81 (128)
T 2vn2_A 52 PTPAELAERM---TVSAAECMEMVRRLLQKGMI 81 (128)
T ss_dssp CCHHHHHHTS---SSCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 5888998876 68999999999999999998
No 157
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=36.85 E-value=28 Score=32.34 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..|.+|... ..|..||.++|. ++...|-.+|++|++.|||
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~---~~~~~~t~~~~~le~~g~v 450 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSE---FKPYYLTKALQKLKDLKLL 450 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSC---CCHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHC---CCHHHHHHHHHHHHHCCCE
Confidence 355566554 467777777654 7899999999999999999
No 158
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.51 E-value=39 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=32.2
Q ss_pred HHHHHHHhhccc--cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 214 NLAVKLLATRAF--TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 214 ~~AL~lLS~Rdr--S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+..+..|...++ |..||.+.| |++...|.++|..|++.|+|.
T Consensus 31 ~~I~~~l~~g~~lps~~eLa~~l---gVSr~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 31 EHIFEELDGNEGLLVASKIADRV---GITRSVIVNALRKLESAGVIE 74 (102)
T ss_dssp HHHTTSSBTTEEEECHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhhcCCCcCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 333344443333 899999988 589999999999999999984
No 159
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=36.31 E-value=51 Score=28.02 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
|-.++..|.. ..-|..+|.+.| +++...+-.+|.+|++.|||.=
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l---~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLM---QVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHH---CCChhHHHHHHHHHHHCCCEEE
Confidence 4456666654 357899999998 5899999999999999999964
No 160
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.21 E-value=36 Score=28.58 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=32.2
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
+|.+|.. -..|..||.+.| +++...+-.+|++|++.|||
T Consensus 53 iL~~L~~~~~~t~~eLa~~l---~i~~stvs~~l~~Le~~GlV 92 (207)
T 2fxa_A 53 ILWIAYQLNGASISEIAKFG---VMHVSTAFNFSKKLEERGYL 92 (207)
T ss_dssp HHHHHHHHTSEEHHHHHHHT---TCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCE
Confidence 3444443 468999999987 58999999999999999999
No 161
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=35.60 E-value=39 Score=26.55 Aligned_cols=33 Identities=6% Similarity=0.251 Sum_probs=28.0
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+--|+.||.+.| |++...|.+++..|+..|||.
T Consensus 37 ~LPser~La~~~---gVSr~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 37 KILSIREFASRI---GVNPNTVSKAYQELERQEVII 69 (134)
T ss_dssp EECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCccHHHHHHHH---CCCHHHHHHHHHHHHHCCcEE
Confidence 444888888877 699999999999999999973
No 162
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.59 E-value=1.3e+02 Score=23.07 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264 183 FEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262 (285)
Q Consensus 183 ~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY 262 (285)
|.++...++.|+ ...-.+...+|...+-+.-+..--+.+++.++. .+++.|.. +||+.
T Consensus 8 ~d~~kv~l~~lk---------------pWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk---~l~~~L~~--fLd~~-- 65 (92)
T 1x4q_A 8 MALSKRELDELK---------------PWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKK---KAADHLKP--FLDDS-- 65 (92)
T ss_dssp CCCCHHHHHHHH---------------HHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHH---HHHHHHTT--TTGGG--
T ss_pred ccchHHhHHHHH---------------HHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHH---HHHHHHHH--Hhhhh--
Confidence 667766666555 455677788888888888887777777776664 55666654 88875
Q ss_pred HHHHHHhhhh
Q 023264 263 AESYSRSRWS 272 (285)
Q Consensus 263 AesyVrsr~~ 272 (285)
|+.|+...++
T Consensus 66 a~~Fv~eLW~ 75 (92)
T 1x4q_A 66 TLRFVDKLFE 75 (92)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 163
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=35.27 E-value=58 Score=26.73 Aligned_cols=39 Identities=33% Similarity=0.531 Sum_probs=31.7
Q ss_pred HHHHhhc-cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 217 VKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 217 L~lLS~R-drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|.+|... ..|..||.++| |.++..|-..|.+|++.|+|.
T Consensus 23 L~~L~~~~~~s~~eLA~~l---glS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQL---KKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 4444432 46999999988 599999999999999999983
No 164
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=34.03 E-value=46 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=28.7
Q ss_pred ccHHHHHHHHhcCC--CCHHHHHHHHHHHHHCCC
Q 023264 225 FTAVEMRKKLNGKK--FPSHVIEAVITDFQSRGL 256 (285)
Q Consensus 225 rS~~ELr~KL~~Kg--~~ee~Ie~VIerLee~Gy 256 (285)
-|..|+-+.|.... ++++.|+.+++.|.+.|.
T Consensus 24 lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 24 ITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp CBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 57899999998766 899999999999999984
No 165
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=33.42 E-value=69 Score=27.32 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccccH--HHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTA--VEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~--~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|-.+++.|.....|. .+|.++| +++...+-.+|++|++.|||.
T Consensus 11 yL~~i~~l~~~~~~~~~~~la~~l---~vs~~tvs~~l~~Le~~GlV~ 55 (226)
T 2qq9_A 11 YLRTIYELEEEGVTPLRARIAERL---EQSGPTVSQTVARMERDGLVV 55 (226)
T ss_dssp HHHHHHHHHHHTCCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhcCCCccHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 445666665444444 8888877 479999999999999999995
No 166
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.19 E-value=1.1e+02 Score=23.95 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=27.3
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 226 TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 226 S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|+.||.+.| |++...|.+++..|+..|+|.
T Consensus 37 se~~La~~~---~vSr~tvr~Al~~L~~~Gli~ 66 (126)
T 3by6_A 37 SVRETALQE---KINPNTVAKAYKELEAQKVIR 66 (126)
T ss_dssp CHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 899999887 589999999999999999873
No 167
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=33.04 E-value=71 Score=26.40 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=34.9
Q ss_pred HHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC-C
Q 023264 214 NLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL-I 257 (285)
Q Consensus 214 ~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~Gy-L 257 (285)
...+.+|.. +..|..||.++| |.+..+|..=|..|++.|+ |
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l---~vS~~Ti~rdi~~L~~~G~~I 67 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEEL---SVSRQVIVQDIAYLRSLGYNI 67 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHH---TSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 345677764 558999999998 7999999999999999998 6
No 168
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=32.68 E-value=1e+02 Score=23.11 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=36.2
Q ss_pred cccHHHHHHHHhcCCC---------CHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q 023264 224 AFTAVEMRKKLNGKKF---------PSHVIEAVITDFQSRGLINDSLYAESYS 267 (285)
Q Consensus 224 drS~~ELr~KL~~Kg~---------~ee~Ie~VIerLee~GyLDD~rYAesyV 267 (285)
+.|-.+|.+-|++.|+ +-+.++.=|+.|-+.|+||...|..+.+
T Consensus 2 MktlYDVqQLLK~fG~~IY~GdR~~DielM~~El~~Ly~~~lId~~~y~~A~l 54 (72)
T 2nn4_A 2 LNTFYDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWARAAA 54 (72)
T ss_dssp CCSHHHHHHHHHTTTCCCCCSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5788899999999885 4466777889999999999999976654
No 169
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.59 E-value=55 Score=25.68 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=32.0
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. ...|..||.+.| |.++..+...+.+|++.|+|.
T Consensus 14 il~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADIL---NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHT---TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3444443 347999999887 689999999999999999984
No 170
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.97 E-value=87 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|.. -..|..||.+.| |.++..+-.-|.+|++.|+|.
T Consensus 32 IL~~L~~~~~~s~~eLA~~l---glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKIT---GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence 3444443 357999999988 689999999999999999985
No 171
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.86 E-value=75 Score=23.51 Aligned_cols=63 Identities=6% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhhhcCC
Q 023264 213 ENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRWSSAS 275 (285)
Q Consensus 213 ~~~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~~~k~ 275 (285)
+..|...+-. ---|..|++.-|+..|.+++.+++++..+- .-|.||=.+|...+..-....++
T Consensus 13 ~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g 80 (99)
T 1qjt_A 13 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNG 80 (99)
T ss_dssp HHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 3445555543 225889999999999999999999998874 57899999999887665555333
No 172
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=30.45 E-value=76 Score=24.10 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=41.4
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhhh
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~~ 272 (285)
---|..||+.-|+..|.+++.+++++...- .-|.||=.+|+.....-...
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~~~ 80 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCA 80 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHHH
Confidence 446899999999999999999999988764 46899999998877655544
No 173
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.37 E-value=1.5e+02 Score=21.11 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=37.1
Q ss_pred ccccHHHH---HHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264 223 RAFTAVEM---RKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 223 RdrS~~EL---r~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~ 272 (285)
|.-|..|+ ..-+.+.+++++.|..+++++...|=.+ -+|+..-+.+..+
T Consensus 16 r~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s-~~Yi~~Il~~W~~ 67 (78)
T 2zc2_A 16 RMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTN-WNYIQAILRNWRH 67 (78)
T ss_dssp SCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 44555554 4445567999999999999998777665 8888888888765
No 174
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.21 E-value=98 Score=24.36 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 226 TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 226 S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|+.+|.+.| |++...|.+++..|+..|+|.
T Consensus 30 se~~La~~~---gvSr~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 30 STNELAAFH---RINPATARNGLTLLVEAGILY 59 (129)
T ss_dssp CHHHHHHHT---TCCHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 888988876 689999999999999999974
No 175
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=30.08 E-value=37 Score=29.84 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Q 023264 222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL 256 (285)
Q Consensus 222 ~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~Gy 256 (285)
+|..+...|+++|...|+++..|++|++..+..+|
T Consensus 117 fr~~~~~~L~~~L~~~~v~~~~i~~I~~~~~~~~y 151 (195)
T 3l9q_A 117 FRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 151 (195)
T ss_dssp HHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCH
T ss_pred ccCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCch
Confidence 36677889999999999999999999999987766
No 176
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=29.59 E-value=1.2e+02 Score=23.96 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhh---------ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 210 QDAENLAVKLLAT---------RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 210 ~kA~~~AL~lLS~---------RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..+.++...+|.. -..|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALA---GTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555532 345888888888 689999999999999999983
No 177
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.27 E-value=1.5e+02 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.9
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 164 ~t~~~lA~~l---G~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 164 FTVEEIANLI---GSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCHHHHHHHH---CSCHHHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEE
Confidence 5888898887 689999999999999999984
No 178
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.21 E-value=1.1e+02 Score=24.50 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=33.3
Q ss_pred HHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..|.. -..|..||.+.| |.++..|-.-|.+|++.|+|-
T Consensus 7 ~il~~L~~~~~~s~~~la~~l---g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKV---GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHH---TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCee
Confidence 34556653 345899999988 799999999999999999985
No 179
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=28.16 E-value=1e+02 Score=24.16 Aligned_cols=45 Identities=4% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHhh-ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 214 ~~AL~lLS~-RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
...|.+|.. ...|..||...|. .|++...|.+-|.+|++.|+|.-
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~-~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDE-IRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTT-CCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHCCCEEe
Confidence 455667755 6899999998652 37899999999999999999964
No 180
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=27.69 E-value=99 Score=27.59 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
...+.++.-....|..||.++| |.++..|-.-|++|++.|+|-
T Consensus 10 ~~~ia~l~~~~~~~~~ela~~l---~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 10 IVKIAQLYYEQDMTQAQIAREL---GIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 3455556666779999999998 699999999999999999995
No 181
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=27.61 E-value=33 Score=26.35 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=32.1
Q ss_pred HHHHHh--hccccHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCCC
Q 023264 216 AVKLLA--TRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 216 AL~lLS--~RdrS~~ELr~KL~~K---g~~ee~Ie~VIerLee~GyLD 258 (285)
.|.+|. ..+.+-.++.+.|.+. ..++..|-.+|.+|++.|||.
T Consensus 14 IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~ 61 (99)
T 2co5_A 14 ILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILR 61 (99)
T ss_dssp HHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEE
Confidence 566665 3356666666665543 578999999999999999995
No 182
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=27.54 E-value=1.1e+02 Score=22.98 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHhcCC---CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhh
Q 023264 211 DAENLAVKLLATRAFTAVEMRKKLNGKK---FPSHVIEAVITDFQSRGLINDSLYAESYSRSR 270 (285)
Q Consensus 211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg---~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr 270 (285)
..=...+.+|+.|.....++-..=...| ++++--+++|+++.+.+- .|+.|++.+.+.-
T Consensus 23 ~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a~-~~p~~~e~i~r~~ 84 (90)
T 2vkl_A 23 RLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGP-DGKDLAILLLRLG 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTCH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 3446678899999999988876554433 577888999999998875 8888998887764
No 183
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=27.23 E-value=1.8e+02 Score=22.26 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 213 ~~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
.++.|..|.- .+.+..||..++ |++...|+.||.+|+..|.|
T Consensus 21 eekVLe~LkeaG~PlkageIae~~---GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKEC---QAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHcCCc
Confidence 4455555544 688999998887 69999999999999999876
No 184
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=26.78 E-value=48 Score=29.21 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHhhc---cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 215 LAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 215 ~AL~lLS~R---drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..|.+|... ..|..||.++|. ++...+-.+|++|++.|||
T Consensus 38 ~vL~~L~~~~~~~~~~~el~~~l~---~~~~t~t~~l~rLe~~G~i 80 (250)
T 1p4x_A 38 ILLTYLFHQQENTLPFKKIVSDLC---YKQSDLVQHIKVLVKHSYI 80 (250)
T ss_dssp HHHHHHHSCSCSEEEHHHHHHHSS---SCGGGTHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHC---CCHhhHHHHHHHHHHCCCE
Confidence 355566653 579999999886 6799999999999999998
No 185
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=26.49 E-value=1.2e+02 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD 258 (285)
....+..|+.-..|..+|...+... +.+...+..+++.|++.|+|.
T Consensus 284 ~~~~l~~la~g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~ 331 (350)
T 2qen_A 284 YVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIV 331 (350)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEE
Confidence 3445556665445667777766433 678889999999999999994
No 186
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=26.38 E-value=1.1e+02 Score=22.97 Aligned_cols=40 Identities=5% Similarity=-0.014 Sum_probs=32.4
Q ss_pred HHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..|+.. -+..+|...+ +.++..+...++.|++.|||.
T Consensus 12 ~IL~~i~~~-~~~t~La~~~---~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 12 AILEACKSG-SPKTRIMYGA---NLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHHHHHTTC-BCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcC-CCHHHHHHHh---CcCHHHHHHHHHHHHHCCCeE
Confidence 345566644 7888887776 589999999999999999995
No 187
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.37 E-value=1.3e+02 Score=24.02 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=40.4
Q ss_pred hhccccHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264 221 ATRAFTAVEMRKKLNGKKF--PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 221 S~RdrS~~ELr~KL~~Kg~--~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~ 272 (285)
+.-+-|..+|++-|..-|+ ++++|++.++-|..++ ||-..|+..|+.--..
T Consensus 22 ~~~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~-lda~e~VeeWmAFsts 74 (101)
T 2keb_A 22 GSMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYG-QNEEGMVGELIAFCTS 74 (101)
T ss_dssp --CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 4567789999999998876 5678999999999999 4988999988876443
No 188
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=26.11 E-value=96 Score=27.28 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred hhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264 221 ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (285)
Q Consensus 221 S~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD 259 (285)
.....|..||.+.| |.+...+...|..|++.|||.-
T Consensus 163 ~~~~~s~~eLA~~l---glsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 163 ETKGTGITELAKML---DKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp HHTCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 34578999999988 5899999999999999999953
No 189
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=25.88 E-value=89 Score=26.83 Aligned_cols=39 Identities=8% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHhhc--cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 217 VKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 217 L~lLS~R--drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|.+|+.. ..|..||.+.| |++...+-..+..|++.|||.
T Consensus 14 L~~l~~~~~~~~~~ela~~~---gl~~stv~r~l~~L~~~G~v~ 54 (249)
T 1mkm_A 14 LDFIVKNPGDVSVSEIAEKF---NMSVSNAYKYMVVLEEKGFVL 54 (249)
T ss_dssp HHHHHHCSSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 4555543 58999999887 789999999999999999994
No 190
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.83 E-value=2.1e+02 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Q 023264 227 AVEMRKKLNGKKFPSHVIEAVITDFQSRG 255 (285)
Q Consensus 227 ~~ELr~KL~~Kg~~ee~Ie~VIerLee~G 255 (285)
+.||..-+....+++..|+++++++.++.
T Consensus 98 r~EL~aL~~a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 98 RYEYNALLTASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 46787777777899999999998887654
No 191
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=25.20 E-value=70 Score=26.01 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=44.5
Q ss_pred HHHHHHHh--hccccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhhh
Q 023264 214 NLAVKLLA--TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 214 ~~AL~lLS--~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~~ 272 (285)
..|.+.+. .---|..||+.-|+..|.+++.+++++...- .-|.||=.+|+.....-.+.
T Consensus 54 ~~~F~~fDd~dG~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~dG~Ld~~EF~~am~li~~~ 116 (139)
T 2jq6_A 54 DEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFALANHLIKVK 116 (139)
T ss_dssp HHHHHHSCCSSSEEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeECHHHHHHHHHHhCcCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 34444554 1225889999999999999999999998764 56899999999887655554
No 192
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.12 E-value=31 Score=29.98 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred hhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Q 023264 221 ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL 256 (285)
Q Consensus 221 S~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~Gy 256 (285)
-+..++..-++++|+++|+....|+++|++|.+.|+
T Consensus 44 V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~ 79 (269)
T 2xvy_A 44 VRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGF 79 (269)
T ss_dssp EEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCC
Confidence 456788889999999999999999999999999885
No 193
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=24.86 E-value=1.3e+02 Score=26.05 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHHHh-----hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 211 DAENLAVKLLA-----TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 211 kA~~~AL~lLS-----~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
++.++|+..|. ....|..||.+.| |++...+-..+..|++.|||
T Consensus 20 ~sl~r~l~iL~~l~~~~~~~~~~eia~~~---gl~kstv~r~l~tL~~~G~v 68 (260)
T 2o0y_A 20 RSVTRVIDLLELFDAAHPTRSLKELVEGT---KLPKTTVVRLVATMCARSVL 68 (260)
T ss_dssp HHHHHHHHHHTTCBTTBSSBCHHHHHHHH---CCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 44566666553 2468999999988 79999999999999999999
No 194
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.77 E-value=53 Score=23.64 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=38.0
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhh
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRW 271 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~ 271 (285)
-|..||+.-|+..|.+++.+++++..+- .-|.||=.+|...+..-..
T Consensus 26 I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~ 74 (92)
T 1fi6_A 26 IPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVA 74 (92)
T ss_dssp EEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Confidence 6889999999888999999999988763 4689999999877655443
No 195
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=24.49 E-value=1.3e+02 Score=23.99 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.0
Q ss_pred cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 224 drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 169 ~~t~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 169 KITHETIANHL---GSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp CCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 45888888887 689999999999999999973
No 196
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=24.48 E-value=1.4e+02 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=32.5
Q ss_pred HHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 217 VKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 217 L~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|.+|+. ...|..||.+.| |++...+-..+..|++.|||.
T Consensus 20 L~~l~~~~~~~~~~eia~~~---gl~~stv~r~l~~L~~~G~v~ 60 (257)
T 2g7u_A 20 LLAFDAQRPNPTLAELATEA---GLSRPAVRRILLTLQKLGYVA 60 (257)
T ss_dssp HHTCSSSCSSCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 344443 467999999988 789999999999999999994
No 197
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=24.36 E-value=16 Score=32.72 Aligned_cols=50 Identities=16% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhc----cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC----CHHHHH
Q 023264 212 AENLAVKLLATR----AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI----NDSLYA 263 (285)
Q Consensus 212 A~~~AL~lLS~R----drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL----DD~rYA 263 (285)
+.++.|++|..- -.+..||.++|. +++++.|.++|+.|.+.|.| ||.-|+
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~--~~~~~~v~~al~~L~~eG~IYsTiDd~h~k 265 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLK--HMSVSSIKQAVDFLSNEGHIYSTVDDDHFK 265 (270)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhc--CCCHHHHHHHHHHHHhCCEEecccccccee
Confidence 344556666543 345567888887 48999999999999999997 666665
No 198
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.17 E-value=86 Score=22.67 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhh
Q 023264 214 NLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRW 271 (285)
Q Consensus 214 ~~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~ 271 (285)
..|...+-. -.-|..||+.-|+..|.+++.++.++..+- .-|.||=.+|...+..-..
T Consensus 13 ~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~ 75 (95)
T 1c07_A 13 DEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQ 75 (95)
T ss_dssp HHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHH
Confidence 344455532 236899999999999999999999998773 4689998889777655443
No 199
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=23.79 E-value=79 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=27.9
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 188 lt~~~lA~~l---g~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLV---GCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHh---CCcHHHHHHHHHHHHHCCCEE
Confidence 4788998888 789999999999999999984
No 200
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=23.69 E-value=94 Score=22.97 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=32.3
Q ss_pred HHHHHHh-hc-cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 215 LAVKLLA-TR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 215 ~AL~lLS-~R-drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..+..|. .. ..|..||.+.| |++...|-++|..|++.|||.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~l---gvs~~tV~~~L~~L~~~GlV~ 64 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQL---NIKVNDVRKKLNLLEEQGFVS 64 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTT---TSCHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3444442 33 57999998865 799999999999999999995
No 201
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=23.66 E-value=1.8e+02 Score=25.43 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHh--------hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 210 QDAENLAVKLLA--------TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 210 ~kA~~~AL~lLS--------~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
..+.+..+..|+ ....+..||+.++. ...++..++.+|+.|.+.|.|
T Consensus 65 ~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~-~~~~~~l~~~ll~~l~~~g~l 119 (258)
T 1lva_A 65 QAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF-SRLPARVYQALLEEWSREGRL 119 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC-TTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHCCCE
Confidence 334445555555 24578899999996 346999999999999998855
No 202
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=23.64 E-value=1.6e+02 Score=22.31 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=37.3
Q ss_pred ccHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264 225 FTAVEMRKKLNGKKF--PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~--~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~ 272 (285)
-|..+|.+-|..-|+ ++++|++.++-+..++ +|-..++..|+.-...
T Consensus 3 vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~-~~~~e~V~ew~Afs~s 51 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYG-QNEEGMVGELIAFCTS 51 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSC-CCHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 477889999998876 5677888888888888 4888888888766554
No 203
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=29 Score=24.82 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHhcCCCC-HHHHHHHHHHHHHC
Q 023264 223 RAFTAVEMRKKLNGKKFP-SHVIEAVITDFQSR 254 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~-ee~Ie~VIerLee~ 254 (285)
-.-+..||..||.+-|.| ...-|+.|++|+.+
T Consensus 9 gaW~~~ELQaKLaE~GAPi~g~REElvdRLk~Y 41 (58)
T 2do5_A 9 GAWAAQELQAKLAEIGAPIQGNREELVERLQSY 41 (58)
T ss_dssp CSSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhCCcccccHHHHHHHHHHH
Confidence 346788999999999988 44456677777643
No 204
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=23.09 E-value=21 Score=26.65 Aligned_cols=30 Identities=13% Similarity=0.442 Sum_probs=27.5
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 226 TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 226 S~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
|..||.+.| |++...|.+++..|++.|||.
T Consensus 37 s~~eLa~~~---~vSr~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 37 SVADIRAQF---GVAAKTVSRALAVLKSEGLVS 66 (102)
T ss_dssp CHHHHHHHS---SSCTTHHHHHTTTTTTSSCCE
T ss_pred CHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 899999887 589999999999999999984
No 205
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=22.08 E-value=95 Score=26.63 Aligned_cols=38 Identities=11% Similarity=0.365 Sum_probs=32.1
Q ss_pred HHHHhhc--cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264 217 VKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (285)
Q Consensus 217 L~lLS~R--drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL 257 (285)
|.+|+.. ..|-.||.+.| |++...+-..+..|++.|||
T Consensus 12 L~~l~~~~~~~s~~ela~~~---gl~~stv~r~l~~L~~~G~v 51 (241)
T 2xrn_A 12 MRALGSHPHGLSLAAIAQLV---GLPRSTVQRIINALEEEFLV 51 (241)
T ss_dssp HHHHHTCTTCEEHHHHHHHT---TSCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 4455543 57999999887 78999999999999999999
No 206
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=22.00 E-value=1.7e+02 Score=25.12 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-|+.||.+.+ |.+...|.+++..|++.|||.
T Consensus 34 Pse~~La~~~---~vSr~tvr~Al~~L~~~G~i~ 64 (236)
T 3edp_A 34 PNETALQEIY---SSSRTTIRRAVDLLVEEGLVV 64 (236)
T ss_dssp CCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 4888988875 799999999999999999983
No 207
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=21.81 E-value=79 Score=24.13 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHhhccccHHHHHHHHhcC-CCCH----HHHHHHHHHHHHCCCCC
Q 023264 219 LLATRAFTAVEMRKKLNGK-KFPS----HVIEAVITDFQSRGLIN 258 (285)
Q Consensus 219 lLS~RdrS~~ELr~KL~~K-g~~e----e~Ie~VIerLee~GyLD 258 (285)
-|--..+|..|+...|.++ +.++ +.+.+.|+.|.+.|||.
T Consensus 50 ~l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 50 QRYDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp HHCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 3444679999999999976 3332 36677888889999884
No 208
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.70 E-value=94 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=28.3
Q ss_pred cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 224 drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 167 ~~t~~~iA~~l---g~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIV---GCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEE
Confidence 45788998888 689999999999999999984
No 209
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.60 E-value=1.7e+02 Score=18.70 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 023264 228 VEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSR 268 (285)
Q Consensus 228 ~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVr 268 (285)
.|..++|..-||+++.+..++... + +|..-|-.|+-
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~---~--~n~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC---N--WDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH---T--SCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh---C--cCHHHHHHHHH
Confidence 356788999999998887777664 3 26667766654
No 210
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=21.41 E-value=89 Score=25.40 Aligned_cols=46 Identities=7% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHhc----C--CCCHHHHHHHHHHHHHCCCCC
Q 023264 213 ENLAVKLLATRAFTAVEMRKKLNG----K--KFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 213 ~~~AL~lLS~RdrS~~ELr~KL~~----K--g~~ee~Ie~VIerLee~GyLD 258 (285)
.-..|.+|+.++.-=.||.+.|++ . ..++..+-.++.+|++.|||.
T Consensus 20 ~l~IL~ll~~~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~ 71 (122)
T 1bm9_A 20 KLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILK 71 (122)
T ss_dssp HHHHHHHHHTTCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHccCCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeE
Confidence 456788999999999999999974 2 357889999999999999983
No 211
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=21.38 E-value=1.8e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
+--|+.||.+.+ |++...|.++|..|++.|||.
T Consensus 52 ~lPse~~La~~~---~vSr~tvr~Al~~L~~~G~i~ 84 (272)
T 3eet_A 52 RLPSQARIREEY---GVSDTVALEARKVLMAEGLVE 84 (272)
T ss_dssp BCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 444899999887 699999999999999999983
No 212
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.32 E-value=1.5e+02 Score=23.87 Aligned_cols=31 Identities=3% Similarity=0.253 Sum_probs=27.3
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 176 ~t~~~iA~~l---g~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 176 LGTQDIMART---SSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp CCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHh---CCcHHHHHHHHHHHHHCCcEE
Confidence 4788888887 689999999999999999974
No 213
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.99 E-value=1e+02 Score=21.64 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=36.0
Q ss_pred cccHHHHHHHHhcCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHH
Q 023264 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYS 267 (285)
Q Consensus 224 drS~~ELr~KL~~Kg~~ee~Ie~VIerLe--e~GyLDD~rYAesyV 267 (285)
--+..|++.-|...|++++.++.++..+- .-|.|+=.+|...+.
T Consensus 43 ~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 43 RLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp SEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred CCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 36889999999999999999999998874 367888888876654
No 214
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.97 E-value=62 Score=23.14 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCHHH------------HHHHHHHHHHCCCCC
Q 023264 229 EMRKKLNGKKFPSHV------------IEAVITDFQSRGLIN 258 (285)
Q Consensus 229 ELr~KL~~Kg~~ee~------------Ie~VIerLee~GyLD 258 (285)
++.+-|.+-||+++- |+.++++|...+|-+
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 345677778888887 667777777766643
No 215
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=20.88 E-value=48 Score=30.64 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=29.5
Q ss_pred ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 223 RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
-.||..||...|. ++++.|.++++.|.+.|||-
T Consensus 50 G~~tl~ei~~~l~---~~~~~v~~~i~~L~~~g~l~ 82 (353)
T 3h5n_A 50 TPSSYTAALETAN---IPEKDFSNCFRFLKENFFII 82 (353)
T ss_dssp SCBCHHHHHTTCC---SCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHcC---CCHHHHHHHHHHHHHCCCEe
Confidence 4599999999875 89999999999999999874
No 216
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=20.51 E-value=1e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=27.6
Q ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 225 rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
.|..+|..+| |.+.+.+..++.+|++.|+|.
T Consensus 165 ~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 165 ITRQEIGRIV---GCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp CCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 5788888887 689999999999999999984
No 217
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.46 E-value=1.7e+02 Score=20.05 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=38.6
Q ss_pred cccHHHHHHHHhcCC--CCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHhhh
Q 023264 224 AFTAVEMRKKLNGKK--FPSHVIEAVITDFQ--SRGLINDSLYAESYSRSRW 271 (285)
Q Consensus 224 drS~~ELr~KL~~Kg--~~ee~Ie~VIerLe--e~GyLDD~rYAesyVrsr~ 271 (285)
--|..||+.-|...| ++++.++.++..+- .-|.|+=..|...+.....
T Consensus 25 ~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~~ 76 (92)
T 2kn2_A 25 YISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRG 76 (92)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHTT
T ss_pred eEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhccC
Confidence 368899999988877 67888999998884 5689999999988776554
No 218
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.25 E-value=1.9e+02 Score=23.11 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=28.4
Q ss_pred cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (285)
Q Consensus 224 drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD 258 (285)
..|..+|...| |.+.+.+..++.+|++.|+|.
T Consensus 167 ~~t~~~lA~~l---g~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 167 GLNTEEIALML---GTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp SSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHh---CCcHHHHHHHHHHHHHCCCEE
Confidence 35888888887 689999999999999999984
Done!