BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023265
         (285 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8FRQ9|ARNE_SHESH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
           subunit ArnE OS=Shewanella sediminis (strain HAW-EB3)
           GN=arnE PE=3 SV=1
          Length = 120

 Score = 39.3 bits (90), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 5   GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 64
           GA+  L  LS   VS+  P+      I+ + SH+   E ++   W+GITL  +G I + A
Sbjct: 55  GAMTWLGVLSVWDVSMAYPLLSINFVIMLLLSHYVFNEPISVRQWIGITLIMLGVIFL-A 113

Query: 65  GGEE 68
           GGE+
Sbjct: 114 GGEQ 117


>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234)
           GN=NGR_a02340 PE=4 SV=1
          Length = 117

 Score = 38.9 bits (89), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 7   LLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 65
           LL  +AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  G
Sbjct: 57  LLFAKALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARG 116

Query: 66  G 66
           G
Sbjct: 117 G 117


>sp|B4ETM0|ARNE_PROMH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
          subunit ArnE OS=Proteus mirabilis (strain HI4320)
          GN=arnE PE=3 SV=1
          Length = 113

 Score = 35.4 bits (80), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 4  FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGI 52
          FG L  LR L   P+S+  P+      ++++   F  KE +N   W+GI
Sbjct: 51 FGMLFWLRLLQILPLSIAYPMLSINFIVVTLIGQFIYKETVNVKHWVGI 99


>sp|Q3KCB8|ARNE_PSEPF Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
           subunit ArnE OS=Pseudomonas fluorescens (strain Pf0-1)
           GN=arnE PE=3 SV=1
          Length = 114

 Score = 33.1 bits (74), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 5   GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL--AGIGTIG 61
           G L+ L  L + PVSV  P+      I+++ + F  KE ++   W G+ L   G+  +G
Sbjct: 53  GLLVWLLVLQRLPVSVAYPMLSLNFVIITLIARFVFKEPVDVQHWFGVLLVIGGVALLG 111


>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1
          Length = 383

 Score = 32.3 bits (72), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 8/48 (16%)

Query: 16  APVSVIQPVSGC----GLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 59
           AP+++I P+ GC    G AI+S+    +LKE + A D +G+TLA  GT
Sbjct: 111 APITLIAPL-GCMSVTGSAIISVL---FLKENLRASDLLGMTLAFAGT 154


>sp|C4K4T7|ARNE_HAMD5 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
           subunit ArnE OS=Hamiltonella defensa subsp.
           Acyrthosiphon pisum (strain 5AT) GN=arnE PE=3 SV=1
          Length = 111

 Score = 31.2 bits (69), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 17  PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 65
           P+S   P     L ++++  HF+ KE +    W+GI +  +G + +G G
Sbjct: 62  PLSQAYPFLSINLILVTLSGHFFFKEKVTLQHWLGIGIMMVGILLLGQG 110


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,973,001
Number of Sequences: 539616
Number of extensions: 3916894
Number of successful extensions: 12642
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12612
Number of HSP's gapped (non-prelim): 44
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)