Query 023265
Match_columns 285
No_of_seqs 136 out of 215
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 99.6 8.4E-16 1.8E-20 144.5 8.8 220 2-231 60-292 (300)
2 TIGR03340 phn_DUF6 phosphonate 99.2 7.2E-10 1.6E-14 102.2 17.7 205 3-229 74-281 (281)
3 PRK15430 putative chlorampheni 99.2 8.9E-09 1.9E-13 95.8 21.7 200 4-235 85-289 (296)
4 PRK11453 O-acetylserine/cystei 99.2 6.5E-09 1.4E-13 96.7 20.7 207 8-230 75-286 (299)
5 TIGR00950 2A78 Carboxylate/Ami 99.1 1.8E-08 3.8E-13 90.7 20.5 199 4-226 59-259 (260)
6 PRK11689 aromatic amino acid e 99.0 2.7E-08 5.9E-13 92.5 20.0 189 17-230 90-286 (295)
7 PLN00411 nodulin MtN21 family 99.0 6.3E-08 1.4E-12 93.3 22.7 209 8-230 94-327 (358)
8 PRK11272 putative DMT superfam 99.0 1.3E-07 2.8E-12 87.8 20.9 196 6-230 83-284 (292)
9 PRK10532 threonine and homoser 98.8 8.4E-07 1.8E-11 82.5 20.2 70 154-230 211-280 (293)
10 TIGR00817 tpt Tpt phosphate/ph 98.7 7.1E-07 1.5E-11 82.9 16.3 208 4-231 77-293 (302)
11 PTZ00343 triose or hexose phos 98.6 6.8E-06 1.5E-10 78.8 21.0 208 6-230 128-347 (350)
12 COG0697 RhaT Permeases of the 98.6 1.2E-05 2.6E-10 72.1 21.2 203 3-230 81-286 (292)
13 PF06027 DUF914: Eukaryotic pr 98.5 1E-05 2.2E-10 77.6 18.4 63 1-63 88-150 (334)
14 TIGR00688 rarD rarD protein. T 98.4 3E-05 6.6E-10 70.2 18.0 172 5-200 83-255 (256)
15 KOG2922 Uncharacterized conser 98.4 6.9E-07 1.5E-11 84.5 7.3 214 3-229 75-304 (335)
16 TIGR00776 RhaT RhaT L-rhamnose 98.4 1.8E-05 3.9E-10 73.9 15.9 210 4-230 71-287 (290)
17 PF04142 Nuc_sug_transp: Nucle 98.1 0.00042 9.1E-09 63.6 18.6 201 2-207 27-235 (244)
18 PF13536 EmrE: Multidrug resis 97.9 2.8E-05 6.1E-10 62.5 6.6 60 4-64 47-106 (113)
19 PRK15051 4-amino-4-deoxy-L-ara 97.7 7.4E-05 1.6E-09 60.6 6.3 60 4-63 49-108 (111)
20 PF08449 UAA: UAA transporter 97.7 0.011 2.4E-07 55.3 20.7 62 2-63 74-135 (303)
21 COG2510 Predicted membrane pro 97.5 0.00012 2.6E-09 61.3 4.7 60 3-62 78-137 (140)
22 COG2510 Predicted membrane pro 97.3 0.00058 1.3E-08 57.2 5.8 67 157-230 72-138 (140)
23 COG2962 RarD Predicted permeas 97.2 0.044 9.6E-07 51.7 18.6 166 30-231 110-283 (293)
24 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.011 2.4E-07 47.9 11.9 66 160-232 45-110 (111)
25 PRK02971 4-amino-4-deoxy-L-ara 97.1 0.0017 3.6E-08 54.3 6.9 62 3-64 59-122 (129)
26 COG5006 rhtA Threonine/homoser 97.1 0.015 3.3E-07 54.0 13.5 140 46-207 119-264 (292)
27 PF00892 EamA: EamA-like trans 96.9 0.0023 5E-08 50.1 5.8 60 3-62 65-124 (126)
28 PF10639 UPF0546: Uncharacteri 96.6 0.0041 9E-08 50.9 5.0 60 2-61 51-111 (113)
29 PRK10452 multidrug efflux syst 96.5 0.012 2.6E-07 48.7 7.6 61 3-63 41-102 (120)
30 PRK02971 4-amino-4-deoxy-L-ara 96.3 0.043 9.3E-07 45.8 10.0 71 154-231 50-122 (129)
31 PF06800 Sugar_transport: Suga 96.2 1.1 2.4E-05 42.0 20.1 60 4-63 57-121 (269)
32 PRK09541 emrE multidrug efflux 96.1 0.027 5.9E-07 45.8 7.3 60 4-63 42-102 (110)
33 PF13536 EmrE: Multidrug resis 96.0 0.062 1.3E-06 43.0 8.8 66 158-231 41-106 (113)
34 PF00892 EamA: EamA-like trans 95.9 0.025 5.4E-07 44.2 6.3 69 155-230 57-125 (126)
35 PF00893 Multi_Drug_Res: Small 95.8 0.019 4E-07 45.0 5.2 53 3-55 40-93 (93)
36 TIGR03340 phn_DUF6 phosphonate 95.6 0.027 5.9E-07 51.8 6.3 59 3-61 222-280 (281)
37 PRK11431 multidrug efflux syst 95.3 0.062 1.3E-06 43.4 6.4 60 3-62 40-100 (105)
38 PRK10650 multidrug efflux syst 95.1 0.066 1.4E-06 43.6 6.2 59 4-62 47-106 (109)
39 KOG2234 Predicted UDP-galactos 94.6 4.7 0.0001 39.1 19.8 56 8-63 108-163 (345)
40 PRK09541 emrE multidrug efflux 94.4 0.9 2E-05 36.9 11.3 67 157-230 35-102 (110)
41 TIGR00950 2A78 Carboxylate/Ami 93.8 0.13 2.9E-06 46.0 5.7 57 3-59 203-259 (260)
42 COG2076 EmrE Membrane transpor 93.6 1.7 3.6E-05 35.4 11.2 76 144-230 25-102 (106)
43 PRK10532 threonine and homoser 93.6 0.24 5.1E-06 46.0 7.2 61 3-63 220-280 (293)
44 TIGR00803 nst UDP-galactose tr 92.9 3.7 8E-05 36.3 13.4 49 159-208 159-207 (222)
45 PRK11689 aromatic amino acid e 92.8 0.24 5.1E-06 46.1 5.9 60 3-62 226-285 (295)
46 PRK10650 multidrug efflux syst 92.4 2.4 5.1E-05 34.5 10.5 70 152-229 35-106 (109)
47 COG2076 EmrE Membrane transpor 91.7 0.6 1.3E-05 37.9 6.2 60 3-62 41-101 (106)
48 PRK11431 multidrug efflux syst 91.7 3.1 6.7E-05 33.5 10.4 65 157-229 34-100 (105)
49 PRK11272 putative DMT superfam 91.5 0.43 9.3E-06 44.2 6.0 61 3-63 224-284 (292)
50 PRK15430 putative chlorampheni 90.7 0.61 1.3E-05 43.3 6.2 59 4-62 225-283 (296)
51 KOG4510 Permease of the drug/m 90.6 1.1 2.3E-05 42.4 7.5 61 3-63 108-168 (346)
52 KOG3912 Predicted integral mem 90.3 0.43 9.4E-06 45.3 4.7 63 1-63 95-157 (372)
53 PRK10452 multidrug efflux syst 90.3 5 0.00011 33.1 10.5 66 157-229 35-101 (120)
54 COG0697 RhaT Permeases of the 90.1 0.81 1.7E-05 40.8 6.3 60 4-63 227-286 (292)
55 PF05653 Mg_trans_NIPA: Magnes 88.1 2.6 5.7E-05 39.9 8.4 107 117-230 8-121 (300)
56 PRK11453 O-acetylserine/cystei 87.9 1.2 2.6E-05 41.4 6.0 60 3-62 226-285 (299)
57 COG2962 RarD Predicted permeas 86.1 4.2 9.1E-05 38.6 8.4 65 169-243 89-153 (293)
58 PLN00411 nodulin MtN21 family 85.3 1.9 4.1E-05 41.8 5.9 60 4-63 268-327 (358)
59 KOG2765 Predicted membrane pro 84.4 2.2 4.8E-05 41.9 5.9 59 11-69 178-236 (416)
60 COG5006 rhtA Threonine/homoser 84.2 3 6.5E-05 39.2 6.3 57 6-62 224-280 (292)
61 PRK13499 rhamnose-proton sympo 83.3 47 0.001 32.3 18.2 60 4-63 85-152 (345)
62 PF00893 Multi_Drug_Res: Small 83.3 14 0.0003 28.6 9.0 50 158-208 35-85 (93)
63 TIGR00776 RhaT RhaT L-rhamnose 72.1 7.5 0.00016 36.2 5.3 60 3-62 222-286 (290)
64 TIGR00817 tpt Tpt phosphate/ph 69.8 24 0.00051 32.6 8.1 61 161-228 74-134 (302)
65 TIGR00688 rarD rarD protein. T 68.5 34 0.00074 30.6 8.6 62 162-230 80-141 (256)
66 PRK02237 hypothetical protein; 67.9 8.3 0.00018 31.5 3.9 32 31-62 72-103 (109)
67 COG3169 Uncharacterized protei 66.6 13 0.00028 30.1 4.7 35 26-60 77-111 (116)
68 PF02694 UPF0060: Uncharacteri 65.7 8.9 0.00019 31.2 3.7 33 30-62 69-101 (107)
69 PTZ00343 triose or hexose phos 65.3 28 0.0006 33.3 7.8 65 159-230 121-185 (350)
70 PF12273 RCR: Chitin synthesis 62.9 6.9 0.00015 32.3 2.7 27 79-105 2-28 (130)
71 PF04284 DUF441: Protein of un 58.4 29 0.00063 29.6 5.7 85 120-209 44-129 (140)
72 COG1742 Uncharacterized conser 56.2 13 0.00028 30.2 3.1 33 31-63 71-103 (109)
73 PF06532 DUF1109: Protein of u 55.8 1.5E+02 0.0032 26.4 12.3 28 17-44 49-76 (204)
74 PF11139 DUF2910: Protein of u 54.7 1.5E+02 0.0033 26.1 13.2 42 189-230 162-210 (214)
75 PF10639 UPF0546: Uncharacteri 54.2 45 0.00097 27.3 6.0 98 124-228 4-111 (113)
76 PF15420 Abhydrolase_9_N: Alph 50.8 1.9E+02 0.0041 26.0 12.5 22 116-137 13-34 (208)
77 PF03151 TPT: Triose-phosphate 48.8 29 0.00063 28.2 4.3 38 24-61 113-150 (153)
78 KOG1583 UDP-N-acetylglucosamin 45.9 83 0.0018 30.2 7.1 37 26-62 99-135 (330)
79 TIGR00803 nst UDP-galactose tr 45.0 20 0.00043 31.6 2.9 37 24-60 184-220 (222)
80 PF04342 DUF486: Protein of un 41.9 33 0.00071 28.0 3.3 34 26-59 70-103 (108)
81 PF08449 UAA: UAA transporter 39.3 47 0.001 30.8 4.6 39 24-62 257-295 (303)
82 KOG1580 UDP-galactose transpor 37.1 3.7E+02 0.008 25.4 12.4 54 153-208 242-296 (337)
83 PF03151 TPT: Triose-phosphate 36.2 1.7E+02 0.0036 23.6 7.0 63 158-227 84-149 (153)
84 COG4944 Uncharacterized protei 35.9 3.3E+02 0.0072 24.6 9.2 49 116-166 156-204 (213)
85 PF06027 DUF914: Eukaryotic pr 34.4 1.1E+02 0.0023 29.7 6.2 77 151-235 78-155 (334)
86 PF06800 Sugar_transport: Suga 31.7 4.2E+02 0.0091 24.9 9.5 70 158-230 51-121 (269)
87 PF08507 COPI_assoc: COPI asso 29.9 1.3E+02 0.0029 24.7 5.4 41 194-241 75-115 (136)
88 PRK13499 rhamnose-proton sympo 29.9 5.3E+02 0.012 25.1 16.4 46 187-233 108-155 (345)
89 KOG1580 UDP-galactose transpor 29.0 77 0.0017 29.8 4.0 47 14-61 264-310 (337)
90 PF12263 DUF3611: Protein of u 28.5 1.3E+02 0.0028 26.7 5.3 30 216-245 56-85 (183)
91 TIGR03758 conj_TIGR03758 integ 28.3 69 0.0015 23.8 2.9 31 168-201 3-33 (65)
92 PF02667 SCFA_trans: Short cha 25.3 2.4E+02 0.0052 28.6 7.1 98 130-244 119-217 (453)
93 COG5336 Uncharacterized protei 24.6 2.8E+02 0.0061 22.8 6.0 27 186-213 52-78 (116)
94 PF12046 DUF3529: Protein of u 24.5 2E+02 0.0043 25.4 5.6 50 117-174 83-132 (173)
95 KOG4314 Predicted carbohydrate 24.3 1.9E+02 0.004 26.6 5.5 61 9-69 70-130 (290)
96 PF03209 PUCC: PUCC protein; 21.4 3.2E+02 0.0068 27.3 7.0 42 21-62 249-292 (403)
97 KOG4510 Permease of the drug/m 20.8 48 0.001 31.7 1.1 72 160-238 105-176 (346)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.62 E-value=8.4e-16 Score=144.49 Aligned_cols=220 Identities=20% Similarity=0.303 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCcccch---
Q 023265 2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIF--- 77 (285)
Q Consensus 2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~~~--- 77 (285)
+++|..++.+|++++|.++|||+.+.++++..+++++++|||++++||.|..++..|..++. .++++++..+....
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~ 139 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIAL 139 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999998754 33333322222111
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcCccch-
Q 023265 78 --QLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLV- 151 (285)
Q Consensus 78 --~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~- 151 (285)
++.............+.......+|.+++ ..+.|...+++..+++-..+|.....+. +|......
T Consensus 140 ~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~ 210 (300)
T PF05653_consen 140 LSQPGFLVYFILVLVLILILIFFIKPRYGRR---------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP 210 (300)
T ss_pred hcCcceehhHHHHHHHHHHHHHhhcchhccc---------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh
Confidence 11111111111111122122222221211 2466788888887887778887554332 23332222
Q ss_pred -hHH-HHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q 023265 152 -PVC-ISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 228 (285)
Q Consensus 152 -~~~-ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~ 228 (285)
+|. +...+.+.....++.|+|++..+.. ...|. -+.=...+++-|.+.+.|--+.+++..+....|+..++.|+.+
T Consensus 211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~-~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~l 289 (300)
T PF05653_consen 211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTS-LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFL 289 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccce-EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhe
Confidence 232 2335567788899999999999953 34455 6666677899999999999999999899999999999999988
Q ss_pred Hhh
Q 023265 229 LVS 231 (285)
Q Consensus 229 L~~ 231 (285)
+..
T Consensus 290 L~~ 292 (300)
T PF05653_consen 290 LSS 292 (300)
T ss_pred eec
Confidence 863
No 2
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.22 E-value=7.2e-10 Score=102.19 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHH
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWL 82 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~ 82 (285)
...+.+...|+.++|.+.++|+..++-+++.+++..++|||+++++|.|+.++..|+..+...+.++ .......+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~--~~~~g~~~--- 148 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ--HRRKAYAW--- 148 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc--cchhHHHH---
Confidence 3556788889999999999999999999999999999999999999999999999998764322111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcC-ccchhH-HHHHHH
Q 023265 83 AFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFP-TMLVPV-CISISI 159 (285)
Q Consensus 83 ~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG-~~fG~~A~l~K~~~~~~~~g~~-~l~~~~-~ly~~i 159 (285)
.+ +...+........|+...+.+. .........++...+ +.+...... + + ++.+. .....+ ..|...
T Consensus 149 ~l---~aal~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 149 AL---AAALGTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLK-R---H--GRSMFPYARQILPSATLGG 218 (281)
T ss_pred HH---HHHHHHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHH-H---h--ccchhhhHHHHHHHHHHHH
Confidence 11 1112222233334443221110 000001111111111 222221110 0 0 00010 011222 256777
Q ss_pred HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265 160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 229 (285)
Q Consensus 160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L 229 (285)
.++..+++++.+++|..++..++. ..-.+|+.++++|+.+|||++... +..|..+++.|+.++
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~-~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVA-LRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEe-ecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence 888999999999999988533332 256699999999999999999764 457777888887653
No 3
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.15 E-value=8.9e-09 Score=95.81 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=125.1
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 83 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~ 83 (285)
..+.+...|+.+.|.+.+.-+..+.=+++.+++..++|||+++++|.++.++.+|+.++...+. + .. + ..
T Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~---~--~~ 154 (296)
T PRK15430 85 GNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP---I--IA 154 (296)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc---H--HH
Confidence 4577888999999999999999999999999999999999999999999999999997642111 1 11 1 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcC----ccchhHH-HHHH
Q 023265 84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFP----TMLVPVC-ISIS 158 (285)
Q Consensus 84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~----~l~~~~~-ly~~ 158 (285)
+.. ....+......||...+.. +.......+-...+..+.+ .. .+.+.. .....+. ++..
T Consensus 155 l~a---a~~~a~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~ 219 (296)
T PRK15430 155 LGL---AFSFAFYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYLF------AI---ADSSTSHMGQNPMSLNLLLIAA 219 (296)
T ss_pred HHH---HHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHHH------HH---ccCCcccccCCcHHHHHHHHHH
Confidence 111 1223333333444322111 0111111222222222211 00 011111 0111122 3333
Q ss_pred HHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023265 159 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRL 235 (285)
Q Consensus 159 i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~ 235 (285)
..++..+++++++++|.-++..++.. +..||+.++.+|++++||+++.. +..|..+++.++.+...+...
T Consensus 220 g~~t~i~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~~~ 289 (296)
T PRK15430 220 GIVTTVPLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDAIY 289 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44677999999999999996544433 78899999999999999999765 457777887777777665543
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.15 E-value=6.5e-09 Score=96.75 Aligned_cols=207 Identities=17% Similarity=0.161 Sum_probs=119.7
Q ss_pred HHHHHhccC-CeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHHHH
Q 023265 8 LMLRALSQA-PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVV 86 (285)
Q Consensus 8 lq~~AL~~g-plsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~v 86 (285)
+...++.++ |.....-+..+.=+++.+++.+++|||+++++|.+..++.+|+..+...+.+.. .. .+ ...+..
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~~---~~-~G~~l~ 148 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--HV---AM-LGFMLT 148 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--ch---hH-HHHHHH
Confidence 445566664 666666677777789999999999999999999999999999987643221111 11 11 112222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhccCcC--ccchhH-HHHHHHHHH
Q 023265 87 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLEQGFP--TMLVPV-CISISICCS 162 (285)
Q Consensus 87 ~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~-G~aaG~~fG~~A~l~K~~~~~~~~g~~--~l~~~~-~ly~~i~~~ 162 (285)
....+.........|+..++... ........+ .+.+++.+...+........ ....+. ....++ -+|..+.++
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~i~~t 225 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTR--PAVMSLVVWSALIPIIPFFVASLILDGSAT-MIHSLVTIDMTTILSLMYLAFVAT 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCc--cchhHHHHHHHHHHHHHHHHHHHHhcCchh-hhhhhccCCHHHHHHHHHHHHHHH
Confidence 22233344444445554321100 001111111 12222222222211110000 000011 111222 258889999
Q ss_pred HHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 163 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 163 ~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
..+++++.+++|.-++..++. ....+|++++++|+.++||++... +.+|..+++.|+.+..
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAP-LSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999999999998777544443 367899999999999999999664 4477777777776544
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.10 E-value=1.8e-08 Score=90.71 Aligned_cols=199 Identities=16% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 83 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~ 83 (285)
+.+.+...|+.+.|.+.+.++..+.=+++++++..++|||+++++|.++.++.+|+..+...++.+ .. .. ..
T Consensus 59 l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~-~~----~~---G~ 130 (260)
T TIGR00950 59 VFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS-IN----PA---GL 130 (260)
T ss_pred HHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc-cc----HH---HH
Confidence 455677889999999999999999999999999999999999999999999999998865333211 11 11 11
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccc-hh-HHHHHHHHH
Q 023265 84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTML-VP-VCISISICC 161 (285)
Q Consensus 84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~-~~-~~ly~~i~~ 161 (285)
.................|+...+.+... .....+....|..+-+ ......++...... ++ +.+|..+.+
T Consensus 131 ~~~l~a~~~~a~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 131 LLGLGSGISFALGTVLYKRLVKKEGPEL---LQFTGWVLLLGALLLL------PFAWFLGPNPQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcCCchH---HHHHHHHHHHHHHHHH------HHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 1112222233333334454443221000 0000011111211111 11111111111111 22 235667777
Q ss_pred HHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHH
Q 023265 162 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV 226 (285)
Q Consensus 162 ~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gv 226 (285)
+..++.++.++++..++..++.. ...+|+.++++++.++||+++.. +..|..+++.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 88999999999999996555443 68899999999999999999763 335555555443
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.05 E-value=2.7e-08 Score=92.51 Aligned_cols=189 Identities=14% Similarity=0.145 Sum_probs=110.0
Q ss_pred CeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCC-CC-C--CcccchhhHHHHHHHHHHHHH
Q 023265 17 PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE-QE-P--SSISIFQLPWLAFVVSILFVL 92 (285)
Q Consensus 17 plsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~-~~-~--~~~~~~~~~~~~~~v~~~~v~ 92 (285)
|-..+.-+..+.=+|+.+++..++|||+++++|.++.++.+|+.++..++.+ +. + +.... .. ...+.......+
T Consensus 90 ~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~-~~-~G~~~~l~aa~~ 167 (295)
T PRK11689 90 QAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS-NP-LSYGLAFIGAFI 167 (295)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc-Ch-HHHHHHHHHHHH
Confidence 3333444556667788899999999999999999999999999876532211 00 0 00000 11 112222222334
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccch---hH-HHHHHHHHHHHHHHH
Q 023265 93 LNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLV---PV-CISISICCSGTGFYY 168 (285)
Q Consensus 93 l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~---~~-~ly~~i~~~~~G~~l 168 (285)
.+......||.+++.+.. ...+ ...++.+-.... .++......+ +. -+|.. .++..++++
T Consensus 168 ~A~~~v~~k~~~~~~~~~------~~~~-~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l 231 (295)
T PRK11689 168 WAAYCNVTRKYARGKNGI------TLFF-ILTALALWIKYF--------LSPQPAMVFSLPAIIKLLLAA-AAMGFGYAA 231 (295)
T ss_pred HHHHHHHHhhccCCCCch------hHHH-HHHHHHHHHHHH--------HhcCccccCCHHHHHHHHHHH-HHHHHHHHH
Confidence 444455566665332211 1111 112222111111 1111111111 21 23444 478889999
Q ss_pred HhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 169 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 169 qq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
|++++|..++..++.. +..+|++++++|+.++||+++.. +..|.++++.|+.+..
T Consensus 232 ~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 232 WNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 9999999996555443 68899999999999999999764 4477777777776654
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.04 E-value=6.3e-08 Score=93.34 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=125.2
Q ss_pred HHHHHhccCCeeeehhhhhHHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHhhcc-CCCC------------
Q 023265 8 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEE------------ 68 (285)
Q Consensus 8 lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~------~~~rl~~~ew~~v~l~~~Gl~~l~~-~~~~------------ 68 (285)
++..++.+-|-+..-=+..+.=+|+.++++++ +|||+++++|.|+.++.+|+.++.. .+..
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 56677788787777777778888999999999 6999999999999999999987532 2210
Q ss_pred --CC-CCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC
Q 023265 69 --QE-PSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG 145 (285)
Q Consensus 69 --~~-~~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g 145 (285)
.. ........+.+..++.....++...+..+.+|..++. +... .....+.+..++.+...+...... + . ..
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~--~~~~-~~t~~~~~~~~~~~~~~~l~~~~~-~-~-~~ 247 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY--PAAF-TVSFLYTVCVSIVTSMIGLVVEKN-N-P-SV 247 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CcHh-HHHHHHHHHHHHHHHHHHHHHccC-C-c-cc
Confidence 00 0011122333334444433444444545455443221 1100 111223444444444333321100 0 0 11
Q ss_pred cCccchh---HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 023265 146 FPTMLVP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLI 222 (285)
Q Consensus 146 ~~~l~~~---~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~i 222 (285)
|...++. ..+|..++ +.++|++|+++.+.-++..++.. ...+|++++++|+++|||++... +.+|.+++
T Consensus 248 ~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LI 319 (358)
T PLN00411 248 WIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGGILI 319 (358)
T ss_pred ceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHH
Confidence 1111111 13465554 56799999999987776555433 68899999999999999999765 45788888
Q ss_pred HHHHHHHh
Q 023265 223 MIGVVLLV 230 (285)
Q Consensus 223 v~Gvv~L~ 230 (285)
+.|+.+..
T Consensus 320 l~Gv~l~~ 327 (358)
T PLN00411 320 TLGFYAVM 327 (358)
T ss_pred HHHHHHHH
Confidence 88886654
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.97 E-value=1.3e-07 Score=87.80 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=119.2
Q ss_pred HHHHHHHh-ccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHH
Q 023265 6 ALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 84 (285)
Q Consensus 6 ~~lq~~AL-~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (285)
+.+...+. .+.|.....-+..+.=+++.+++.. +|||+++++|.+..++.+|+..+...++.+ .+. + ..+
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~~~-----~--G~l 153 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-GNP-----W--GAI 153 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-cch-----H--HHH
Confidence 45566677 7788887888888888899999875 799999999999999999988764322211 111 1 111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcCcc---chh-HHHHHHH
Q 023265 85 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFPTM---LVP-VCISISI 159 (285)
Q Consensus 85 ~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG-~~fG~~A~l~K~~~~~~~~g~~~l---~~~-~~ly~~i 159 (285)
.......+.+......||..++.. .....+....| ....... ...++.+... .++ +-.|..+
T Consensus 154 ~~l~a~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~i 220 (292)
T PRK11272 154 LILIASASWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLLIAS-------LLSGERLTALPTLSGFLALGYLAV 220 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHHHHH-------HHcCCcccccCCHHHHHHHHHHHH
Confidence 111222233333444455432111 11112222222 1111111 1111122111 122 2257778
Q ss_pred HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.++..++++++++.|..++..++.. ...||+.++++|+.++||++... +..|.++++.|+..+.
T Consensus 221 ~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 221 FGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 8899999999999999986444432 68899999999999999998653 4577778888887664
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.80 E-value=8.4e-07 Score=82.48 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.+|..++++..+++++++++|.-++..++.. +..||++++++|+++|||+++.. +.+|.++++.|++...
T Consensus 211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 3688899999999999999999986555443 78899999999999999998664 4577777777776664
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.70 E-value=7.1e-07 Score=82.93 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=116.6
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHH
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 83 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~ 83 (285)
....++-.++.+-+.+..|=+..+.-+|+.+++.+++|||+++++|.+..++.+|+++.+. ++.+ .. + ...
T Consensus 77 ~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~-~~~~----~~---~-~G~ 147 (302)
T TIGR00817 77 IGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD-TELS----FN---W-AGF 147 (302)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC-Cccc----cc---H-HHH
Confidence 4567889999999999999999999999999999999999999999999999999976532 1111 11 1 111
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhccCcCc---cchhHHHH-HH
Q 023265 84 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILF-GMASVISKLGFVFLEQGFPT---MLVPVCIS-IS 158 (285)
Q Consensus 84 ~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~f-G~~A~l~K~~~~~~~~g~~~---l~~~~~ly-~~ 158 (285)
+...+.....+......||..+..+ +...+-..+....|..+ ...+..... .....+++.. ..++..+| ..
T Consensus 148 ~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 148 LSAMISNITFVSRNIFSKKAMTIKS---LDKTNLYAYISIMSLFLLSPPAFITEG-PPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC---CCcccHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHhhcccCchHHHHHH
Confidence 1122222233333334455433101 11112223322222221 111111110 0000000000 01111112 12
Q ss_pred HHHHHHHHHHH----hhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 159 ICCSGTGFYYQ----TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 159 i~~~~~G~~lq----q~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
+.++...+.++ ..+.+.=++..++.. ...+|++++++|+.+|||++... +.+|.++++.|+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 23333333333 356666555444443 78899999999999999998764 45777788888866553
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.62 E-value=6.8e-06 Score=78.75 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=120.3
Q ss_pred HHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHHH
Q 023265 6 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFV 85 (285)
Q Consensus 6 ~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (285)
+..+..++++.+++..|=+-+++=+|+++++.+++|||++++.|.++.+.++|+++... +|.+ . .+ +..+.
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~-~~~~----~---~~-~G~~~ 198 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV-KELH----F---TW-LAFWC 198 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec-ccch----h---HH-HHHHH
Confidence 34455899999999999999999999999999999999999999999999999998643 2211 1 11 11222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHH-H---HHhHhhhc--cCcCccchhHHHHH
Q 023265 86 VSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYGLESGILFGMASVI-S---KLGFVFLE--QGFPTMLVPVCISI 157 (285)
Q Consensus 86 v~~~~v~l~~~~~~~~r~r~~~~~~--~~~~~~a~l~G~aaG~~fG~~A~l-~---K~~~~~~~--~g~~~l~~~~~ly~ 157 (285)
..+..+..+......|+..++.+.. .+....-..+....|.++-+--.. . +......+ ..+.......-+|
T Consensus 199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~- 277 (350)
T PTZ00343 199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF- 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-
Confidence 2222223333333444433211100 001111111112222222211111 1 10000000 0111111112234
Q ss_pred HHHHHHHHHHHHhh----hhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 158 SICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 158 ~i~~~~~G~~lqq~----al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.+.++.+.+++++. +++.=++...+. ++..+|++++++|+.+|||++... +.+|.++++.|+.+..
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv-~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAV-ANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence 46677778888774 777766544443 367899999999999999998764 4578888888887654
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.61 E-value=1.2e-05 Score=72.11 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHH
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPW 81 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa-~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~ 81 (285)
..+..+...++..-|....+++..+.-+++.+++. +++|||+++++|.+..+...|+.++...+..+... .+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~-----~~-~ 154 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL-----SL-L 154 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH-----HH-H
Confidence 35567778889999999999999999999999997 77799999999999988999999876444332111 11 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccc-hh-HHHHHHH
Q 023265 82 LAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTML-VP-VCISISI 159 (285)
Q Consensus 82 ~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~-~~-~~ly~~i 159 (285)
............+......++.. +.. ......+ ..+.....+.-. ....+.+..... .+ ...+..+
T Consensus 155 g~~~~l~a~~~~a~~~~~~~~~~-~~~-----~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~ 222 (292)
T COG0697 155 GLLLALAAALLWALYTALVKRLS-RLG-----PVTLALL-----LQLLLALLLLLL-FFLSGFGAPILSRAWLLLLYLGV 222 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCC-----hHHHHHH-----HHHHHHHHHHHH-HHhccccccCCHHHHHHHHHHHH
Confidence 11111111122222222333332 110 1111111 111100001111 111111112222 22 2245556
Q ss_pred HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
..+..+++++.++++..+...++ +.+..+|+.+..+++.++||+.+.. +..|.++++.|+....
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 223 FSTGLAYLLWYYALRLLGASLVA-LLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 66668999999999999853332 2358899999999999999999774 3466666666666554
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.51 E-value=1e-05 Score=77.64 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 1 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 1 ~~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
+|+.|--+...|+.+-+++-+|=+-..+.+|++++|..++|+|.++.+|.|+.+|..|++++.
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 477888899999999999999999999999999999999999999999999999999999764
No 14
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.40 E-value=3e-05 Score=70.24 Aligned_cols=172 Identities=10% Similarity=0.045 Sum_probs=101.0
Q ss_pred HHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCcccchhhHHHHH
Q 023265 5 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 84 (285)
Q Consensus 5 G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (285)
...+...|+.+.|++...-+..+.=+|+.+++++++|||+++++|.++.+..+|+..+..++.+ .. + .++
T Consensus 83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~-----~~---~--~~l 152 (256)
T TIGR00688 83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS-----LP---W--EAL 152 (256)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC-----ch---H--HHH
Confidence 4567788999999998888888899999999999999999999999999999999865322111 11 1 122
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc-cCcCccchhHHHHHHHHHHH
Q 023265 85 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE-QGFPTMLVPVCISISICCSG 163 (285)
Q Consensus 85 ~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~-~g~~~l~~~~~ly~~i~~~~ 163 (285)
+. ..+.+......||.++... .....+...-..+.....+.. +... +.+...-.+..++....++.
T Consensus 153 ~a---a~~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~t~ 219 (256)
T TIGR00688 153 VL---AFSFTAYGLIRKALKNTDL-------AGFCLETLSLMPVAIYYLLQT---DFATVQQTNPFPIWLLLVLAGLITG 219 (256)
T ss_pred HH---HHHHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHHHHHHHHh---ccCcccccCchhHHHHHHHHHHHHH
Confidence 11 2233333334555443210 111111111111111000000 0000 00011112222333344688
Q ss_pred HHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHH
Q 023265 164 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA 200 (285)
Q Consensus 164 ~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~v 200 (285)
.++++++++++.-++..++ +....||++++.+|..+
T Consensus 220 i~~~l~~~a~~~~~a~~~s-~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 220 TPLLAFVIAANRLPLNLLG-LLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999964443 33788999999999764
No 15
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=6.9e-07 Score=84.47 Aligned_cols=214 Identities=18% Similarity=0.300 Sum_probs=139.4
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccc-chh--
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSIS-IFQ-- 78 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~-~~~-- 78 (285)
++|=.+.-+|.+++|-++|-|++++++++.++++++++||+++..+..|..+|++|..++. .++++++..+.- .++
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~ 154 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELA 154 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHh
Confidence 4677788899999999999999999999999999999999999999999999999998764 445554432111 111
Q ss_pred --hH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---ccCcCccc
Q 023265 79 --LP---WLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL---EQGFPTML 150 (285)
Q Consensus 79 --~~---~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~---~~g~~~l~ 150 (285)
+. +..+.+. .++.+... ...|... .--+.|...+++.=.++-..+|..-..+ -+|...+.
T Consensus 155 ~~~~Fliy~~~iil-~~~il~~~--~~p~~g~---------tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~ 222 (335)
T KOG2922|consen 155 TEPGFLVYVIIIIL-IVLILIFF--YAPRYGQ---------TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLF 222 (335)
T ss_pred cCccHHHHHHHHHH-HHHHHhee--ecccccc---------cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccc
Confidence 11 1112111 11111111 1111111 1235666666665333333466533222 24444443
Q ss_pred hh---HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHH
Q 023265 151 VP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV 226 (285)
Q Consensus 151 ~~---~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gv 226 (285)
.| ..+...+.|...-..+.|+|++.=+. ....|. -+.--...++.|...|-|=-+.+......++.|...+..|+
T Consensus 223 ~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnt-slV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~ 301 (335)
T KOG2922|consen 223 YPLTWIFLLVVATCVSTQMNYLNKALDLFNT-SIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGI 301 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhhee
Confidence 33 23344566777778888999997774 333444 55666668999999999999998888888888888888888
Q ss_pred HHH
Q 023265 227 VLL 229 (285)
Q Consensus 227 v~L 229 (285)
.++
T Consensus 302 flL 304 (335)
T KOG2922|consen 302 FLL 304 (335)
T ss_pred eEe
Confidence 766
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.36 E-value=1.8e-05 Score=73.93 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=111.0
Q ss_pred HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHHhhccCCCCCCC-Ccccch
Q 023265 4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIF 77 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~e----w~~v~l~~~Gl~~l~~~~~~~~~-~~~~~~ 77 (285)
.|..++..|.+...+++-.|+.. .++++..+.+..++||+.++++ +.++.++.+|.+++...++++.. ++....
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~ 150 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF 150 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence 45588999999999999999999 9999999999999999999999 77888888997776532222111 110111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhHHHHH
Q 023265 78 QLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISI 157 (285)
Q Consensus 78 ~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~ly~ 157 (285)
.-. .+......+.........++... ..+ . ..+=..-|+.++-.-..... . ..+.+. .-+.+....
T Consensus 151 ~~G--i~~~l~sg~~y~~~~~~~~~~~~----~~~---~-~~~~~~~g~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~ 216 (290)
T TIGR00776 151 KKG--ILLLLMSTIGYLVYVVVAKAFGV----DGL---S-VLLPQAIGMVIGGIIFNLGH--I-LAKPLK-KYAILLNIL 216 (290)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHHcCC----Ccc---e-ehhHHHHHHHHHHHHHHHHH--h-cccchH-HHHHHHHHH
Confidence 111 11111111222222222332211 111 1 11111112221111111110 0 001110 011121111
Q ss_pred HHHHHHHHHHHHhhhhc-cCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 158 SICCSGTGFYYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 158 ~i~~~~~G~~lqq~al~-~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.......++.+.-.+.+ .-+. .........||++++..++.+|+|+.+... ......|..+++.|+++..
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~-~~~~~ls~~~pvia~~~~v~~l~E~~~~~~--~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGV-ATSFSLSQLGVIISTLGGILILGEKKTKRE--MIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHcccccch-hhHHHHHHHHHHHHHHHHHHHhccCCCcce--eehhHHHHHHHHHHHHHHh
Confidence 22235566655555656 3332 222233677999999999999999997643 2222366677777776554
No 17
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.10 E-value=0.00042 Score=63.60 Aligned_cols=201 Identities=20% Similarity=0.126 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC--C--CCCCCcc---
Q 023265 2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG--E--EQEPSSI--- 74 (285)
Q Consensus 2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~--~--~~~~~~~--- 74 (285)
+.+.--++..++++-|-+.-|=+.-+.+++|++++..++|||+++++|.+..+.++|+..+..++ + .++....
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~ 106 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHD 106 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccc
Confidence 44556788999999999999999999999999999999999999999999999999999764111 1 1111111
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhH
Q 023265 75 -SIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPV 153 (285)
Q Consensus 75 -~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~ 153 (285)
.........+.+.....+=.....+..+.-++.+.+- -.+-+.+ -..|+++.+.....+......++|+..-++++
T Consensus 107 ~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~--~~~N~qL-~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~ 183 (244)
T PF04142_consen 107 ASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSL--WIQNMQL-YLFGILFNLLALLLSDGSAISESGFFHGYSWW 183 (244)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHH-HHHHHHHHHHHHhcccccccccCCchhhcchH
Confidence 1111111111111111111111222322222221111 1122333 23344445545444433222344555556666
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 023265 154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 207 (285)
Q Consensus 154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~ 207 (285)
.+. .+..-..|-++-.--++.-+- ..=..++..+.++..++.+.+||.++..
T Consensus 184 ~~~-~i~~~a~gGllva~v~Kyadn-I~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 184 VWI-VIFLQAIGGLLVAFVLKYADN-IVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HHH-HHHHHHHhhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 443 455555555554445555442 2334446667788888999999988866
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.92 E-value=2.8e-05 Score=62.51 Aligned_cols=60 Identities=27% Similarity=0.443 Sum_probs=56.3
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhcc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 64 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~ 64 (285)
.++.+...|+.++| ..+.++..++.+|+.+++..++|||+++++|.++.++.+|++++..
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 56889999999999 6899999999999999999999999999999999999999998753
No 19
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.74 E-value=7.4e-05 Score=60.62 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=56.3
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
+.+.+-..+++..|+++..|+..++.+++.+++.+++|||++.++|.|+.+..+|+++++
T Consensus 49 l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 49 LAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999999999999999999999998764
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.67 E-value=0.011 Score=55.27 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 2 DIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 2 ~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
+.++-.++-.||.+-|...-+=.=.+.++++++++..++|+|.+++||.++.+.++|++.+.
T Consensus 74 ~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~ 135 (303)
T PF08449_consen 74 FFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT 135 (303)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence 56777889999999999988888899999999999999999999999999999999999875
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.54 E-value=0.00012 Score=61.31 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
.+++.+--.||..|+.|.|-|+--++.+++..++..++|||+|..+|+|+.++.+|..++
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 467788889999999999999999999999999999999999999999999999998765
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.28 E-value=0.00058 Score=57.22 Aligned_cols=67 Identities=33% Similarity=0.471 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.+...+.+++++.=+|+|.|+.. ...|-.-.+|+..+.+++++|||++.... .+|..++++|+++++
T Consensus 72 lSGla~glswl~Yf~ALk~G~as-~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 72 LSGLAGGLSWLLYFRALKKGKAS-RVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc-eEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 34557777888888999999953 23444667899999999999999998764 388889999987765
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.25 E-value=0.044 Score=51.67 Aligned_cols=166 Identities=13% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 023265 30 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQE 108 (285)
Q Consensus 30 ~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~ 108 (285)
++-.+++..++|||+++-+|+++.++++|+.... ..++ .+ |..+..+.. ...+.. .||.-.
T Consensus 110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~------lp-----wval~la~s---f~~Ygl-~RK~~~--- 171 (293)
T COG2962 110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS------LP-----WVALALALS---FGLYGL-LRKKLK--- 171 (293)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC------Cc-----HHHHHHHHH---HHHHHH-HHHhcC---
Confidence 3566889999999999999999999999999643 2222 22 445544432 222222 222211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhhccCcC-----ccchhHHHHHHHHHHHHHHHHHhhhhccCcchhH
Q 023265 109 MIEFEVVEEIIYGLESGILFGMASVISK--LGFVFLEQGFP-----TMLVPVCISISICCSGTGFYYQTRGLKHGRAIVV 181 (285)
Q Consensus 109 ~~~~~~~~a~l~G~aaG~~fG~~A~l~K--~~~~~~~~g~~-----~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~v 181 (285)
+....|.+.=+.-.+-- .-...+++.-+ ..-.++-+.+....+..-..+...|-+.=|. .+
T Consensus 172 -----------v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpl-s~ 239 (293)
T COG2962 172 -----------VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPL-ST 239 (293)
T ss_pred -----------CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCH-HH
Confidence 11122222111111111 11112222221 1111222223334555566777777776663 22
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 182 STCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 182 s~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
.--..-.+|..=.++++.++||+++.+ +..+.+++-.++++.+.
T Consensus 240 ~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 240 LGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 222378899999999999999999886 45677777777766654
No 24
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.14 E-value=0.011 Score=47.87 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 023265 160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS 232 (285)
Q Consensus 160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s 232 (285)
.+-...+++++.++|.-|. -..-+....+++....+|..+|||+++.. +.+|..+++.|+++++.+
T Consensus 45 ~~~~l~~~~~~~al~~ipl-g~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPV-GIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence 5667789999999999884 34444433789999999999999999764 568888999999888754
No 25
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.10 E-value=0.0017 Score=54.26 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHHhhcc
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGA 64 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~--~~~~rl~~~ew~~v~l~~~Gl~~l~~ 64 (285)
++++.+-..+++..|+++..|+....+++....+.. ++||+++.++|.|+.++.+|+.++..
T Consensus 59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 457788889999999999999999998888888875 89999999999999999999998753
No 26
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.09 E-value=0.015 Score=54.04 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHhhccCCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 023265 46 AVDWMGITLAGIGTIGVGAGGEEQEP-SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLES 124 (285)
Q Consensus 46 ~~ew~~v~l~~~Gl~~l~~~~~~~~~-~~~~~~~~~~~~~~v~~~~v~l~~~~~~~~r~r~~~~~~~~~~~~a~l~G~aa 124 (285)
.+|..|++++..|+.++.-.+++.++ ++.+ +.......++.+.+....+|..+... ..+ |++.
T Consensus 119 ~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G-------v~~Al~AG~~Wa~YIv~G~r~g~~~~-----g~~----g~a~ 182 (292)
T COG5006 119 LRDFVWVALAVLGIWLLLPLGQSVWSLDPVG-------VALALGAGACWALYIVLGQRAGRAEH-----GTA----GVAV 182 (292)
T ss_pred hhhHHHHHHHHHHHHhheeccCCcCcCCHHH-------HHHHHHHhHHHHHHHHHcchhcccCC-----Cch----HHHH
Confidence 35666777888888776533433221 2222 33333444566665555555542111 011 2333
Q ss_pred HHHHHHHHHHHHH-hHhhhccCcCccchhH----HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHH
Q 023265 125 GILFGMASVISKL-GFVFLEQGFPTMLVPV----CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGML 199 (285)
Q Consensus 125 G~~fG~~A~l~K~-~~~~~~~g~~~l~~~~----~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~ 199 (285)
|... .++..-. +. .|.-..+++|- .+.+.+..+.+=|-+.|-++++=|. .......-.||..+.+.|++
T Consensus 183 gm~v--Aaviv~Pig~---~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~-~~F~~LlSLePa~aAl~G~i 256 (292)
T COG5006 183 GMLV--AALIVLPIGA---AQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA-RTFGTLLSLEPALAALSGLI 256 (292)
T ss_pred HHHH--HHHHHhhhhh---hhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh-hHHHHHHHhhHHHHHHHHHH
Confidence 3222 2222221 22 12223455543 3445566666678999999998774 11111145699999999999
Q ss_pred HhcCCCCC
Q 023265 200 ALGERLPS 207 (285)
Q Consensus 200 vLGE~l~~ 207 (285)
+|||++..
T Consensus 257 ~L~e~ls~ 264 (292)
T COG5006 257 FLGETLTL 264 (292)
T ss_pred HhcCCCCH
Confidence 99999976
No 27
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.90 E-value=0.0023 Score=50.14 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
.+++.+...|+...|.+.+.++..++-+++.+++..++||++++++|.|+.++..|+.++
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999998764
No 28
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.55 E-value=0.0041 Score=50.94 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265 2 DIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 61 (285)
Q Consensus 2 ~~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~ 61 (285)
+..|.++=...|+..|+|+.-|+- +++++||++.+.++.+|..+++.|.|..+++.|+.+
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 456788888899999999999998 999999999997777777788899999999998764
No 29
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.54 E-value=0.012 Score=48.71 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 3 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
.+.+.+-..|++.-|+++..|+. ..+.+.+..++.+++||+++..+|.++.+..+|++++-
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 35677888999999999999997 69999999999999999999999999999999998863
No 30
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.35 E-value=0.043 Score=45.79 Aligned_cols=71 Identities=17% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHH--HHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 154 CISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 154 ~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv--~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
-+|..+.+..+++++|..+++.-|.- ..-|.....+......++ .+|||+++.. +..|.+++++|++.+..
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls-~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLS-RAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence 36788999999999999999998852 333333333444444455 4899999764 56888999999988764
No 31
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.20 E-value=1.1 Score=42.01 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=50.3
Q ss_pred HHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~----~v~l~~~Gl~~l~ 63 (285)
+|-.+|..+....-+|.--|+. ...|+.+.+++.++++|.-+..+|. ++++..+|+.+-+
T Consensus 57 iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 57 IGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999 6789999999999999999999988 3444455555443
No 32
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.08 E-value=0.027 Score=45.81 Aligned_cols=60 Identities=15% Similarity=0.331 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
+.+.+-..|++.-|+++..|+-+ .|.+.+..++.+++||+++..+|.|+.+..+|++++-
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45667788999999999999955 8999999999999999999999999999999999873
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.95 E-value=0.062 Score=42.95 Aligned_cols=66 Identities=26% Similarity=0.296 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 158 SICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 158 ~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
++.....+++++..|++..+. .++ +..-.+|+...++|...|+|+++.. +..+.+++.+|++++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 344445778889999999994 333 4456799999999999999999875 34677788889988875
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=95.91 E-value=0.025 Score=44.19 Aligned_cols=69 Identities=30% Similarity=0.375 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 155 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 155 ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
.+..+.++..+++++++++|..++..++ .....+|+.+.++++.+++|+++.. +..|..+++.|++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVS-ILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 3445555788999999999999864443 3366899999999999999999653 4466677777776653
No 35
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.85 E-value=0.019 Score=45.01 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHH
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLA 55 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~ 55 (285)
.+.+.+-..|++..|+++.-|+.. .+.+.+.+++..++||++|..+|.++.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 356778889999999999999986 99999999999999999999999998763
No 36
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.62 E-value=0.027 Score=51.84 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 61 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~ 61 (285)
.+++.+...+++..|.+.+.++.-.+-+++.+++..++||+++..+|.|..++.+|+.+
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 46788999999999999999999999999999999999999999999999999999865
No 37
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.27 E-value=0.062 Score=43.38 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
...+.+...|+..-|+++.-++-. .|.+.+.+++.+++||++|..+|.++.+..+|++++
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 356778888999999999999987 899999999999999999999999999999999876
No 38
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.14 E-value=0.066 Score=43.56 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=53.7
Q ss_pred HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
+.+.+...|++.-|+++.-++-. .|.+.+..++.+++||+++..+|.++.+...|+.++
T Consensus 47 ~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 47 AAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 46777888999999999999986 788999999999999999999999999999998865
No 39
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.61 E-value=4.7 Score=39.12 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=51.9
Q ss_pred HHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 8 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 8 lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
+|-+|++.-|=..=|..--.-...|++++..++|||+++++|.+..+...|+..+-
T Consensus 108 l~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 108 LQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 67889999998889999999999999999999999999999999999999999763
No 40
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.45 E-value=0.9 Score=36.89 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
..+.+-...|++.+++++.=|. ...-+. +-...+...++|+.+|||+++.. +..+..+++.|++.+-
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl-~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPT-GIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3456777889988989987663 222222 33466667899999999999664 5588889999998874
No 41
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=93.78 E-value=0.13 Score=45.98 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 59 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl 59 (285)
..++.+...|++..|...+..+..+.-+++.+++..++||+++..+|.|..+...|+
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 468889999999999999999999999999999999999999999999999988875
No 42
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.63 E-value=1.7 Score=35.35 Aligned_cols=76 Identities=32% Similarity=0.440 Sum_probs=52.6
Q ss_pred cCcCccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHH
Q 023265 144 QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLL 221 (285)
Q Consensus 144 ~g~~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~ 221 (285)
||+....... +.+.+-...|++...++|.=|. -...+ +-...+..+++|+.+|||+++.. ..++..+
T Consensus 25 ~gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipv--gvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~L 93 (106)
T COG2076 25 DGFTRLWPSI---LTIVGYGLSFYLLSLALKTIPL--GVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLAL 93 (106)
T ss_pred hcccccchHH---HHHHHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHH
Confidence 4555433332 3355667789998889998662 23334 55566677899999999999663 4577788
Q ss_pred HHHHHHHHh
Q 023265 222 IMIGVVLLV 230 (285)
Q Consensus 222 iv~Gvv~L~ 230 (285)
+++|++.+=
T Consensus 94 iiaGvi~Lk 102 (106)
T COG2076 94 ILAGVIGLK 102 (106)
T ss_pred HHHHHHHhh
Confidence 888988763
No 43
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=93.57 E-value=0.24 Score=46.01 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
++++.++..+++..|-+.+.++...+-+++.+++..+++|+++..+|+|..++..|.+...
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999998888754
No 44
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=92.86 E-value=3.7 Score=36.32 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 023265 159 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 208 (285)
Q Consensus 159 i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~ 208 (285)
+.+...|..+-.--++.-+.. +-...+..+++...++++..|||++...
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls~~ 207 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKISST 207 (222)
T ss_pred HHHHHhcCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 445555544444344444433 2223377899999999999999998664
No 45
>PRK11689 aromatic amino acid exporter; Provisional
Probab=92.79 E-value=0.24 Score=46.07 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
.+++.++..+++..|-+.+.++.-.+-+++.+++..+++|+++..+|.|.+++..|+.+.
T Consensus 226 ~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 226 GFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 468899999999999999999999999999999999999999999999999999887754
No 46
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=92.42 E-value=2.4 Score=34.47 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265 152 PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 229 (285)
Q Consensus 152 ~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L 229 (285)
++.....+.+-...|++..+++|.=|. - ...+ +-...+..+++|+.+|||+++.. +..+..+++.|++.+
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpv-g-vAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDL-S-VAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCch-H-HHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 333334466777889999999997662 2 2333 45566667899999999999664 557888899998876
No 47
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=91.71 E-value=0.6 Score=37.92 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccCCeeeehhhh-hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~-~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
.+.|.+...|+..-|+++.-++- ..|.+.+...+..++||+++..+|.++.+..+|++++
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999986 4688999999999999999999999999999998875
No 48
>PRK11431 multidrug efflux system protein; Provisional
Probab=91.69 E-value=3.1 Score=33.51 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhH--HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 229 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a--tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L 229 (285)
..+.+-...|++...++|.=|. -...+ +-...+..+++|+.+|||+++.. +..+..+++.|++.+
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~--gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPV--GTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCc--HhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 3466778889999999987662 23333 55677777999999999999664 557788889998876
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=91.52 E-value=0.43 Score=44.20 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
++++.+...+++..|.+.+-.+...+-+++.+++..++||+++..+|.|..++..|+.+..
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999987753
No 50
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=90.66 E-value=0.61 Score=43.30 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=53.9
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
+++.+-..|++..|-+.+.++.-.+-+++.+++..+++|+++..+|.|..++.+|+.++
T Consensus 225 i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 225 VPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999999999987666653
No 51
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=90.59 E-value=1.1 Score=42.45 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
..|..++--|+.+-|++=.-=+.-.+=+||..++..++||+-+..|-++......|++++.
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 4566677778887777655555666778999999999999999999999999999988754
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.29 E-value=0.43 Score=45.31 Aligned_cols=63 Identities=29% Similarity=0.566 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 1 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 1 ~~~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
||+.|--++-+.|-+-.-|--|=+=..-++|+-+++.-+++++++.++|.++..+..|+..++
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 689999999999999999999999999999999999999999999999999999999999876
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=90.27 E-value=5 Score=33.12 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 229 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L 229 (285)
..+.+-...|++...++|.=|. ...-+. +-...+..+++|+.+|||+++.. +.++..+++.|++.+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lpl-siAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l 101 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIAL-GVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHh
Confidence 3466778889999999987663 222222 33455666889999999999664 557788889998877
No 54
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=90.12 E-value=0.81 Score=40.78 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
.++.+...++...+...+.++.....+++..++..+++|+++..+|.|++++..|+....
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 578888899999999999999999999999999999999999999999988888887653
No 55
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=88.10 E-value=2.6 Score=39.88 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcc-Cc------CccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHH
Q 023265 117 EIIYGLESGILFGMASVISKLGFVFLEQ-GF------PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVAS 189 (285)
Q Consensus 117 a~l~G~aaG~~fG~~A~l~K~~~~~~~~-g~------~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~ 189 (285)
++.+++.+.++.+.+..+-|....+.++ +. ..++..+.++.+......|-..+--+|.-.|. ...+|.....
T Consensus 8 Gv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~-slv~Plg~~~ 86 (300)
T PF05653_consen 8 GVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA-SLVAPLGALS 86 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH-HHHHHHHhhh
Confidence 4556666666667777777766554432 11 11222122344555667777777778887773 3444445556
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 190 IVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 190 pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
-+...+++-.+|+|+++... ..|-++++.|.++++
T Consensus 87 lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 87 LVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIV 121 (300)
T ss_pred hhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeE
Confidence 66678899999999998753 366667777776654
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=87.92 E-value=1.2 Score=41.35 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
++++.++..+++.-+-.-+-++....=+++.+++..+++|+++..+|.|..++..|+.+.
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 456777777776666666667777777789999999999999999999999988887754
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=86.09 E-value=4.2 Score=38.59 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=49.4
Q ss_pred HhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhcccch
Q 023265 169 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPS 243 (285)
Q Consensus 169 qq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~~~~~p~~~ 243 (285)
.=-|-++|..+.+|.. -..+|++-+++|.++|+||++. ..|..++.+.+.+..-+....+.|...
T Consensus 89 fiWAvn~g~~leaSLG-Y~InPL~~VllG~lflkErls~---------~Q~iAV~lA~~GV~~~~~~~g~lpwva 153 (293)
T COG2962 89 FIWAVNNGHVLEASLG-YFINPLVNVLLGRLFLKERLSR---------LQWIAVGLAAAGVLIQTWLLGSLPWVA 153 (293)
T ss_pred hheecCCCchhHHHhH-HHHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 3357788887766654 6889999999999999999987 566666666666666677777777643
No 58
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=85.28 E-value=1.9 Score=41.79 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
++|.++..+++.-+-+.+-...-..=+|+++++..+++|+++..+++|.+++..|+.+..
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888889999999999999999999999999999998764
No 59
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=84.44 E-value=2.2 Score=41.90 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=50.8
Q ss_pred HHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCC
Q 023265 11 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ 69 (285)
Q Consensus 11 ~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~ 69 (285)
+||++-.+.-.-=+..++=.||+.++..+-.||.+..+.+++.+...|++.+.-++..|
T Consensus 178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 57888888888888889999999999999999999999999999999999876444333
No 60
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=84.18 E-value=3 Score=39.15 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=51.7
Q ss_pred HHHHHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 6 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 6 ~~lq~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
|-|+.+||+-.|=..---+++..=.+++..+..+++|+++..||.++.++..+.++.
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 678999999999888888899999999999999999999999999999988777654
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=83.28 E-value=47 Score=32.33 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccCCeeeehhhhh-HHHHHHHHHHHHHhcccc---chhhHH----HHHHHHHHHHhhc
Q 023265 4 FGALLMLRALSQAPVSVIQPVSG-CGLAILSIFSHFYLKEVM---NAVDWM----GITLAGIGTIGVG 63 (285)
Q Consensus 4 ~G~~lq~~AL~~gplsvVQPl~~-~~l~ftl~lsa~~~~~rl---~~~ew~----~v~l~~~Gl~~l~ 63 (285)
+|-.+|..+.++.-+|+-+|+.. ..++++.++...+++|-- +..++. |++++.+|+++.+
T Consensus 85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999964 678899999999988644 444443 6777778877654
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=83.25 E-value=14 Score=28.64 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCC
Q 023265 158 SICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSA 208 (285)
Q Consensus 158 ~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~ 208 (285)
.+.+-..++++..+++|.-|. .+.-|. +-...+.-.++|+.++||+++..
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~-~vaYavw~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPL-SVAYAVWTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 455777889999999999884 222233 44566777889999999999774
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=72.08 E-value=7.5 Score=36.21 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhc-cCCeeeehhhhhHHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHHhh
Q 023265 3 IFGALLMLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGV 62 (285)
Q Consensus 3 ~~G~~lq~~AL~-~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew----~~v~l~~~Gl~~l 62 (285)
.+++.+...++. ..+.+..-++...+-+++...+.+++||+.+++|+ .|..+...|+.+.
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 456777778888 88888888999999999999999999999999999 8888888777654
No 64
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=69.78 E-value=24 Score=32.58 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q 023265 161 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 228 (285)
Q Consensus 161 ~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~ 228 (285)
+....+.+++.+++.-+.. ......-..|+.-.+++..+++|+++... ..+..+++.|++.
T Consensus 74 ~~~~~~~~~~~~l~~~s~s-~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l 134 (302)
T TIGR00817 74 VHTIGHVTSNVSLSKVAVS-FTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVAL 134 (302)
T ss_pred HHHHHHHHHHHHHHhccHH-HHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhh
Confidence 4556677888898876632 11222456899999999999999997653 3555566666654
No 65
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=68.46 E-value=34 Score=30.64 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 162 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 162 ~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
....+++.-.++|..+...++ ......|+...+++..+++|+++..- .++..+..+|++.+.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~-~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVS-LGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHH
Confidence 445566667788877643222 22556999999999999999997753 345555555665543
No 66
>PRK02237 hypothetical protein; Provisional
Probab=67.91 E-value=8.3 Score=31.48 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 31 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 31 ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
..+.-...+.|.|+++.||+|.++|.+|+.++
T Consensus 72 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 72 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 44466788899999999999999999888764
No 67
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.65 E-value=13 Score=30.12 Aligned_cols=35 Identities=31% Similarity=0.206 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 023265 26 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60 (285)
Q Consensus 26 ~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~ 60 (285)
++.|.+-.++|.+++||++++..|.+..+...++.
T Consensus 77 VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 45788888999999999999999988777666654
No 68
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=65.67 E-value=8.9 Score=31.21 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 30 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 30 ~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
+..++-...+.|+|+++.||+|..+|.+|+.++
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 455666788899999999999999999998864
No 69
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=65.27 E-value=28 Score=33.35 Aligned_cols=65 Identities=18% Similarity=0.110 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 159 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 159 i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
..++..++...+.+++..+..-+. -....+|+.-++++..+++|+.+... ..+.+.++.|+.+.+
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~-iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTH-VVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHH-HHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHhee
Confidence 345555566677888877742222 12668999999999999999997753 355566666766654
No 70
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.88 E-value=6.9 Score=32.30 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023265 79 LPWLAFVVSILFVLLNGWLRICKHQRR 105 (285)
Q Consensus 79 ~~~~~~~v~~~~v~l~~~~~~~~r~r~ 105 (285)
|.++++++++++++++++...++|+|+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 443344333334444444444444443
No 71
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=58.42 E-value=29 Score=29.57 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhc-cCcCccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHH
Q 023265 120 YGLESGILFGMASVISKLGFVFLE-QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM 198 (285)
Q Consensus 120 ~G~aaG~~fG~~A~l~K~~~~~~~-~g~~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv 198 (285)
+|..-|+.+=..++++-..+.... ++....+..|.-+..+.+|.+..|+..+|.+ +-...|--+...++|..+|+
T Consensus 44 ~Gl~~GiiiLtiaiLvPiAtGki~~~~l~~~f~s~~g~~Ai~~Gilva~l~g~Gv~----Ll~~~P~v~~gLviGTIiGV 119 (140)
T PF04284_consen 44 KGLNWGIIILTIAILVPIATGKIGFKDLLNSFKSWKGIIAILAGILVAWLGGRGVN----LLKVQPQVIVGLVIGTIIGV 119 (140)
T ss_pred hChhHhHHHHHHHHHccccCCCcCHHHHHHHHhCHHHHHHHHHHHHHHHHhccChH----HHccCChhhHHHHHHHHHHH
Confidence 577788888888887766554221 1221223334434568899999999988887 43445556778899999999
Q ss_pred HHhcCCCCCCh
Q 023265 199 LALGERLPSAP 209 (285)
Q Consensus 199 ~vLGE~l~~~~ 209 (285)
.+|+- .|.+|
T Consensus 120 ~ff~G-vpvGP 129 (140)
T PF04284_consen 120 AFFKG-VPVGP 129 (140)
T ss_pred HHcCC-cccch
Confidence 99874 56666
No 72
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=56.20 E-value=13 Score=30.24 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 31 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 31 ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
..+.-..+..|.|++|.||.|..+|.+|+.++.
T Consensus 71 ~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil 103 (109)
T COG1742 71 ASLAWLWVVDGVRPDRYDWIGAAICLAGVAVIL 103 (109)
T ss_pred HHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeE
Confidence 444556678899999999999999989877653
No 73
>PF06532 DUF1109: Protein of unknown function (DUF1109); InterPro: IPR009495 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.79 E-value=1.5e+02 Score=26.36 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=16.5
Q ss_pred CeeeehhhhhHHHHHHHHHHHHHhcccc
Q 023265 17 PVSVIQPVSGCGLAILSIFSHFYLKEVM 44 (285)
Q Consensus 17 plsvVQPl~~~~l~ftl~lsa~~~~~rl 44 (285)
|.+.++......+..+.....+-+.+.=
T Consensus 49 p~f~~k~~~~~~la~~a~~a~~~l~rPg 76 (204)
T PF06532_consen 49 PRFWIKFAFALALAVAAAWAAFRLSRPG 76 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4455555556666666666666665554
No 74
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=54.70 E-value=1.5e+02 Score=26.11 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCh-----hH--HHHHHHHHHHHHHHHHHHh
Q 023265 189 SIVTGVVAGMLALGERLPSAP-----TA--RFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 189 ~pvvav~lGv~vLGE~l~~~~-----~~--~~~~~~~~~~iv~Gvv~L~ 230 (285)
.|+.--.+...+.+|+.+.-- |. --.....|.+.+.|+.++.
T Consensus 162 ~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 162 LPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 444455566666666653210 00 0123466677777776654
No 75
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=54.23 E-value=45 Score=27.34 Aligned_cols=98 Identities=26% Similarity=0.234 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhHhhhccCcC---------ccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHH
Q 023265 124 SGILFGMASVISKLGFVFLEQGFP---------TMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTG 193 (285)
Q Consensus 124 aG~~fG~~A~l~K~~~~~~~~g~~---------~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvva 193 (285)
.|+++|++.-+.|.+..-.++.-. .++.-|.+.+-..+=..|-.+.-..++.-+. ....|. |-..=+.-
T Consensus 4 Vg~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dl-SlavPi~Nsl~fvfT 82 (113)
T PF10639_consen 4 VGILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADL-SLAVPIANSLAFVFT 82 (113)
T ss_pred ehHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCc-eeeehHHhHHHHHHH
Confidence 466777777777765543322111 1222233322222223333333334555553 223333 33333444
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHH
Q 023265 194 VVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL 228 (285)
Q Consensus 194 v~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~ 228 (285)
++.| .++||+..... ...|..+++.|+.+
T Consensus 83 ~l~g-~~lge~~~~~~-----~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 83 ALTG-WLLGEEVISRR-----TWLGMALILAGVAL 111 (113)
T ss_pred HHHH-HHhcCcccchh-----HHHHHHHHHcCeee
Confidence 5555 67788775421 23666777777654
No 76
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=50.77 E-value=1.9e+02 Score=26.03 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023265 116 EEIIYGLESGILFGMASVISKL 137 (285)
Q Consensus 116 ~a~l~G~aaG~~fG~~A~l~K~ 137 (285)
.+++-|+...+.|++.......
T Consensus 13 Qgv~~Gi~~a~GY~~Gv~~~~l 34 (208)
T PF15420_consen 13 QGVVSGISAAIGYGLGVFLRWL 34 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665544433
No 77
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=48.84 E-value=29 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265 24 VSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 61 (285)
Q Consensus 24 l~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~ 61 (285)
+....-+++.+++..+++|+++..++.|+.++.+|...
T Consensus 113 ~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 113 LGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 34556678889999999999999999999999998764
No 78
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=45.90 E-value=83 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 26 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 26 ~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
..+++-++.++..+.|+|-+.++...+.+..+|++..
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIc 135 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIIC 135 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeE
Confidence 5688999999999999999999999999999999864
No 79
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=45.05 E-value=20 Score=31.61 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 023265 24 VSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 60 (285)
Q Consensus 24 l~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~ 60 (285)
+..++-+++.+++.++++++++...|.|+.++..|+.
T Consensus 184 ~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 184 VTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 4567888999999999999999999999998887753
No 80
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=41.88 E-value=33 Score=27.97 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 023265 26 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 59 (285)
Q Consensus 26 ~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl 59 (285)
+.+|.+-.+++.+++||++++....+..+...++
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 3466677789999999999999988877765554
No 81
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=39.31 E-value=47 Score=30.84 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 023265 24 VSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 62 (285)
Q Consensus 24 l~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l 62 (285)
+..+.=.++.++|..+++++++..+|.|+.++..|+..-
T Consensus 257 v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 257 VTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 345566788999999999999999999999999988763
No 82
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=37.12 E-value=3.7e+02 Score=25.44 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 023265 153 VCISISICCSGTGF-YYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 208 (285)
Q Consensus 153 ~~ly~~i~~~~~G~-~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~ 208 (285)
|.+.....++.+|- +..-.=-.-||+ .-|. .|...-+.-+++.+++++.++...
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPL-tCSi-vTTTRKfFTil~SVllf~npls~r 296 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVEEFGPL-TCSI-VTTTRKFFTILISVLLFNNPLSGR 296 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCe-eEEE-EeehHHHHHHHHHHHHhcCcCcHH
Confidence 44555566888883 333333344663 2222 166777888999999999999763
No 83
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=36.23 E-value=1.7e+02 Score=23.57 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhc---cCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHH
Q 023265 158 SICCSGTGFYYQTRGLK---HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV 227 (285)
Q Consensus 158 ~i~~~~~G~~lqq~al~---~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv 227 (285)
.+..+..++.++-..|- .-+++..+.. .....+.-+++|+.++||++... ...|..+.+.|+.
T Consensus 84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~-~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~ 149 (153)
T PF03151_consen 84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVL-GNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVL 149 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHH-HHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHh
Confidence 34455555555443332 2222222222 34445556889999999997542 3355555555543
No 84
>COG4944 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.91 E-value=3.3e+02 Score=24.59 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhHHHHHHHHHHHHHH
Q 023265 116 EEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF 166 (285)
Q Consensus 116 ~a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~ly~~i~~~~~G~ 166 (285)
|..+-|.++|+.-|=.++..-. .+-.|||.....+|+.+-+ ...++.|-
T Consensus 156 rP~lAGfaaGL~aGgi~a~~Ya-~hC~e~~~~Fva~WYtlgi-~~lgviGa 204 (213)
T COG4944 156 RPTLAGFAAGLAAGGIGATVYA-WHCTEDGPLFVATWYTLGI-LLLGVIGA 204 (213)
T ss_pred CchHHHHHHHHhcccHHHHhhh-hcCCCCccHHHHHHHHHHH-HHHHHHHH
Confidence 3556666666654443333222 2223566666667766543 33455553
No 85
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=34.40 E-value=1.1e+02 Score=29.67 Aligned_cols=77 Identities=21% Similarity=0.122 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 023265 151 VPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 229 (285)
Q Consensus 151 ~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L 229 (285)
.+|-+.....+=+.|-|+...|||.=+. .|... .-.......++...+|+||.+.. +.+|..+.++|++++
T Consensus 78 ~~w~y~lla~~Dv~aN~~~v~a~~yTsv--tS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv 149 (334)
T PF06027_consen 78 PWWKYFLLALLDVEANYLVVLAYQYTSV--TSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLV 149 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccH--hHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhhe
Confidence 3455555566778889999999997773 23323 33344445679999999999764 457777888899888
Q ss_pred hhhhhH
Q 023265 230 VSSSRL 235 (285)
Q Consensus 230 ~~s~~~ 235 (285)
+.++..
T Consensus 150 ~~sD~~ 155 (334)
T PF06027_consen 150 VVSDVL 155 (334)
T ss_pred eeeccc
Confidence 876643
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=31.72 E-value=4.2e+02 Score=24.93 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 158 SICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 158 ~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
..++-..|-..|-++|+.=-. ....|- |-.+-+...++|+.+|||--....+ .....+.++++.|+.+-+
T Consensus 51 sG~~W~iGq~~qf~s~~~~GV-S~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 51 SGAFWAIGQIGQFKSFKKIGV-SKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-eeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhc
Confidence 344556677778888875442 223344 4445556788999999998876543 222356667777775544
No 87
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=29.90 E-value=1.3e+02 Score=24.74 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhccc
Q 023265 194 VVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRW 241 (285)
Q Consensus 194 v~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~~~~~p~ 241 (285)
+.+|.+.+++ .......|+.++..|++-+.--..-.+.+|+
T Consensus 75 if~G~l~~~~-------~~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~ 115 (136)
T PF08507_consen 75 IFLGTLCLGQ-------SILSIIIGLLLFLVGVIYIILGFFCPIKEPE 115 (136)
T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 4567777777 2344567788888888777754444444554
No 88
>PRK13499 rhamnose-proton symporter; Provisional
Probab=29.88 E-value=5.3e+02 Score=25.11 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhcC--CCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 023265 187 VASIVTGVVAGMLALGE--RLPSAPTARFSLLLGWLLIMIGVVLLVSSS 233 (285)
Q Consensus 187 va~pvvav~lGv~vLGE--~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~ 233 (285)
-.+-+.+.++|.+++|| ....++....+ ..+.+++++|+++.+.+-
T Consensus 108 Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~-~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 108 GITLIVGTLMPPIINGNFDVLLATNGGRMT-LLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHHHHHHccccccccccchHHHH-HHHHHHHHHHHHHHHHhh
Confidence 34666788889999997 33344544443 478888888887777644
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=28.96 E-value=77 Score=29.84 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=36.0
Q ss_pred ccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 023265 14 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 61 (285)
Q Consensus 14 ~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~ 61 (285)
.+||+.-- =+-.+-=.||.+.|..+++..++.|+|+|..++..++.+
T Consensus 264 ~FgPLtCS-ivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 264 EFGPLTCS-IVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HhCCeeEE-EEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 45666321 112345679999999999999999999999998888774
No 90
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=28.49 E-value=1.3e+02 Score=26.66 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhcccchhh
Q 023265 216 LLGWLLIMIGVVLLVSSSRLVRHFRWPSRR 245 (285)
Q Consensus 216 ~~~~~~iv~Gvv~L~~s~~~~~~~p~~~~~ 245 (285)
..+..+.++|++.+.-+..-.=...+.-+|
T Consensus 56 ~~gl~~a~~gl~~l~~si~~~fry~Rlar~ 85 (183)
T PF12263_consen 56 GIGLFLAICGLVALFFSIFWSFRYTRLARR 85 (183)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777887777776655555444443
No 91
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.35 E-value=69 Score=23.82 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHh
Q 023265 168 YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLAL 201 (285)
Q Consensus 168 lqq~al~~G~~l~vs~~atva~pvvav~lGv~vL 201 (285)
-|+.+||+++- ..|.+..--++|.++.+++|
T Consensus 3 aQ~sAFqA~SG---~~p~~l~~l~lG~~~~vllL 33 (65)
T TIGR03758 3 AQQSAFQAASG---IDPQAMNTLILGLVLAVLFL 33 (65)
T ss_pred HHHHHHHhccC---CCHHHHHHHHHHHHHHHHHH
Confidence 38899999884 45555666667777666554
No 92
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=25.30 E-value=2.4e+02 Score=28.58 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=50.7
Q ss_pred HHHHHHHHhHhhhccCcCccchhHHHHHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCCh
Q 023265 130 MASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAP 209 (285)
Q Consensus 130 ~~A~l~K~~~~~~~~g~~~l~~~~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~ 209 (285)
+.+.+.|....+.+ +.+ +-++++++-.|+..|+.|+...-++...++. +++....-| .+..|-+|.+-
T Consensus 119 ~gallArelarr~~-~vd-------YpllvAaaY~g~~vWh~GlSgS~pL~~At~g---~~l~~~~~~-~~~~~vIP~se 186 (453)
T PF02667_consen 119 VGALLARELARRVK-GVD-------YPLLVAAAYSGFVVWHGGLSGSAPLLVATPG---HFLEKIIGG-LVITGVIPTSE 186 (453)
T ss_pred HHHHHHHHHHHhcc-CCc-------HHHHHHHHHHHHHHHhccccchhHHHhcCCC---CcHHHHhcc-cccCCccCcch
Confidence 34556776544332 221 2235778899999999998855454444333 333333322 22356666543
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhhhhHhhhcccchh
Q 023265 210 TARFSLLLG-WLLIMIGVVLLVSSSRLVRHFRWPSR 244 (285)
Q Consensus 210 ~~~~~~~~~-~~~iv~Gvv~L~~s~~~~~~~p~~~~ 244 (285)
. +.. +-+++..++++.........||+..+
T Consensus 187 T-----if~~~nli~~~~~~v~~pli~~~m~P~~~~ 217 (453)
T PF02667_consen 187 T-----IFSPYNLIIVVVLLVVLPLINYLMAPKPEE 217 (453)
T ss_pred h-----hcchHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 2 122 22344444444444455566787643
No 93
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.59 E-value=2.8e+02 Score=22.85 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 023265 186 AVASIVTGVVAGMLALGERLPSAPTARF 213 (285)
Q Consensus 186 tva~pvvav~lGv~vLGE~l~~~~~~~~ 213 (285)
-++..+||+.+|++ ++--..++||.+.
T Consensus 52 fIsGilVGa~iG~l-lD~~agTsPwglI 78 (116)
T COG5336 52 FISGILVGAGIGWL-LDKFAGTSPWGLI 78 (116)
T ss_pred HHHHHHHHHHHHHH-HHHhcCCCcHHHH
Confidence 46677888888764 4555567888764
No 94
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=24.53 E-value=2e+02 Score=25.41 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhccCcCccchhHHHHHHHHHHHHHHHHHhhhhc
Q 023265 117 EIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLK 174 (285)
Q Consensus 117 a~l~G~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~ly~~i~~~~~G~~lqq~al~ 174 (285)
|+++-+-+++..+..+..... +.. -+.+|.+++....=..|.|+||||=+
T Consensus 83 A~fLt~l~~~Gl~cl~LVL~~----l~P----~~g~~~~~L~lLsPlAG~~Yw~kA~R 132 (173)
T PF12046_consen 83 AIFLTFLAAIGLACLGLVLSI----LFP----DLGWWPLLLVLLSPLAGIFYWQKAGR 132 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcC----CcccHHHHHHHHhhhhhhhhhhcCCC
Confidence 555555555544444443333 211 23355554444444567899998755
No 95
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=24.30 E-value=1.9e+02 Score=26.65 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHhccCCeeeehhhhhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCC
Q 023265 9 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ 69 (285)
Q Consensus 9 q~~AL~~gplsvVQPl~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~~~~~~ 69 (285)
-+.||..-+-+.+..+.+++-.|--+++...+|+|....+..++.++..|+.++.-.++++
T Consensus 70 Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 70 YLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred HHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 4567888888999999999999999999999999999999999999888888776344443
No 96
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=21.38 E-value=3.2e+02 Score=27.32 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=28.0
Q ss_pred ehhhhhHHHHHHHHHHHHHhccccchhhHH--HHHHHHHHHHhh
Q 023265 21 IQPVSGCGLAILSIFSHFYLKEVMNAVDWM--GITLAGIGTIGV 62 (285)
Q Consensus 21 VQPl~~~~l~ftl~lsa~~~~~rl~~~ew~--~v~l~~~Gl~~l 62 (285)
...+...+-++...+..+.+.+|.+.+.+. |...+..+...+
T Consensus 249 Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li 292 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI 292 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 344556777888888888999888887776 333344444443
No 97
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=20.83 E-value=48 Score=31.70 Aligned_cols=72 Identities=22% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 023265 160 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRH 238 (285)
Q Consensus 160 ~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~s~~~~~~ 238 (285)
+.|..|.++--++|+.=+..-+++ -|...|+.-+.+..+.|+|+... + +.++-..-..||+++++-+++--.
T Consensus 105 ~mG~tgvmlmyya~~~mslaDA~v-ItFssPvft~ifaw~~LkE~~t~--~----eaL~s~itl~GVVLIvRPpFlFG~ 176 (346)
T KOG4510|consen 105 FMGFTGVMLMYYALMYMSLADAVV-ITFSSPVFTIIFAWAFLKEPFTK--F----EALGSLITLLGVVLIVRPPFLFGD 176 (346)
T ss_pred hhhhhHHHHHHHHHhhcchhheEE-EEecChHHHHHHHHHHHcCCCcH--H----HHHHHHHhhheEEEEecCCcccCC
Confidence 355666666666777665211111 17789999999999999999954 3 556666777799999987776655
Done!