Query 023265
Match_columns 285
No_of_seqs 136 out of 215
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 4.1E-05 1.4E-09 60.7 7.3 62 3-64 41-103 (110)
2 2i68_A Protein EMRE; transmemb 97.8 9.6E-05 3.3E-09 61.1 9.4 70 156-231 34-103 (137)
3 3b5d_A Multidrug transporter E 97.5 0.0012 4E-08 52.2 11.8 72 153-231 31-103 (110)
4 2i68_A Protein EMRE; transmemb 97.5 0.00016 5.4E-09 59.8 5.8 61 3-63 41-102 (137)
5 3rlb_A THIT; S-component, ECF 49.5 1.2E+02 0.0041 25.7 10.7 86 159-244 100-188 (192)
6 2zt9_E Cytochrome B6-F complex 17.6 1.4E+02 0.0048 18.1 3.2 16 117-132 12-27 (31)
7 1vf5_E Protein PET L; photosyn 13.3 1.2E+02 0.004 18.6 2.1 15 117-131 13-27 (32)
8 2k1e_A Water soluble analogue 12.2 2.1E+02 0.0072 21.0 3.8 27 201-230 57-83 (103)
9 2dw3_A Intrinsic membrane prot 12.1 3E+02 0.01 20.0 4.4 24 218-241 33-56 (77)
10 2wsw_A BCCT family betaine/car 4.3 5.3E+02 0.018 25.1 3.3 19 150-169 149-167 (509)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.84 E-value=4.1e-05 Score=60.69 Aligned_cols=62 Identities=18% Similarity=0.365 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCeeeehhh-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhcc
Q 023265 3 IFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 64 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl-~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~~ 64 (285)
.+++.+-..|++..|++.+-|+ ...+.+++.+++.+++||+++..+|.|+.++.+|+.++..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566778889999999999999 7999999999999999999999999999999999998753
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.81 E-value=9.6e-05 Score=61.11 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 156 SISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 156 y~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
.+.+++..++|++++++++..+.-.+....+-.+|+..+++|+.+|||+++.. +.+|.++++.|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45677899999999999999996433332267799999999999999999775 45888899999988864
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.55 E-value=0.0012 Score=52.15 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCcchhHhhhH-HHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 023265 153 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS 231 (285)
Q Consensus 153 ~~ly~~i~~~~~G~~lqq~al~~G~~l~vs~~a-tva~pvvav~lGv~vLGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~~ 231 (285)
|.....+.+...+++++++++|..|.-. .-|. +-.+|+...++|+.+|||+++.. +..|..+++.|++.+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~al~~~p~s~-ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGI-AYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhh-HHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 3334567788889999999999999533 3333 66799999999999999999664 56888899999988764
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.46 E-value=0.00016 Score=59.80 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhccCCeeeehhh-hhHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 023265 3 IFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 63 (285)
Q Consensus 3 ~~G~~lq~~AL~~gplsvVQPl-~~~~l~ftl~lsa~~~~~rl~~~ew~~v~l~~~Gl~~l~ 63 (285)
.+++.+...|++..|++.+-|+ ..++.+++.+++.++++|+++..+|+|+.++.+|+.++.
T Consensus 41 ~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4677888999999999999999 799999999999999999999999999999999999874
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=49.51 E-value=1.2e+02 Score=25.69 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHh-hhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023265 159 ICCSGTGFYYQT-RGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS--APTARFSLLLGWLLIMIGVVLLVSSSRL 235 (285)
Q Consensus 159 i~~~~~G~~lqq-~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~--~~~~~~~~~~~~~~iv~Gvv~L~~s~~~ 235 (285)
..++..|++..+ +..+..........++...-+..++-|++++|+-.|. +|+..-...-+--.+.-+++...-...+
T Consensus 100 ~~~GlaG~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~lL 179 (192)
T 3rlb_A 100 VSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIF 179 (192)
T ss_dssp HHGGGGGGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665544 1111111222233336666777888999999987776 3432211112222333444444444445
Q ss_pred hhhcccchh
Q 023265 236 VRHFRWPSR 244 (285)
Q Consensus 236 ~~~~p~~~~ 244 (285)
-+..|+...
T Consensus 180 ~k~~~~~~~ 188 (192)
T 3rlb_A 180 VKKFPKLFI 188 (192)
T ss_dssp HHHCGGGGS
T ss_pred HHhhhhhhc
Confidence 555565554
No 6
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=17.62 E-value=1.4e+02 Score=18.14 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023265 117 EIIYGLESGILFGMAS 132 (285)
Q Consensus 117 a~l~G~aaG~~fG~~A 132 (285)
+.++|+++|+.||+-+
T Consensus 12 ~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999999999854
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=13.27 E-value=1.2e+02 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023265 117 EIIYGLESGILFGMA 131 (285)
Q Consensus 117 a~l~G~aaG~~fG~~ 131 (285)
+.++|+++|+.||+-
T Consensus 13 ~~~f~iA~GL~fGlr 27 (32)
T 1vf5_E 13 ALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 578899999999873
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=12.15 E-value=2.1e+02 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=13.8
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 201 LGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 201 LGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
+||-.|.++.+.. .....++.|+..++
T Consensus 57 yGDi~P~t~~gr~---~~~~~~l~G~~~~~ 83 (103)
T 2k1e_A 57 YGDRYPVTEEGRK---VAEQVMKAGIEVFA 83 (103)
T ss_dssp CCSSCCCSSSCTH---HHHHHHHHHHHHHH
T ss_pred CCCCCCCChhHHH---HHHHHHHHHHHHHH
Confidence 4777777655443 33334444444443
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=12.07 E-value=3e+02 Score=20.04 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhhccc
Q 023265 218 GWLLIMIGVVLLVSSSRLVRHFRW 241 (285)
Q Consensus 218 ~~~~iv~Gvv~L~~s~~~~~~~p~ 241 (285)
+..+..+...++.....+-+.+|+
T Consensus 33 AAv~f~~~~~~lv~l~~iG~~LPE 56 (77)
T 2dw3_A 33 AGGVFFGTLLLIGFFRVVGRMLPI 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCch
Confidence 333444444455555566677774
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=4.30 E-value=5.3e+02 Score=25.12 Aligned_cols=19 Identities=5% Similarity=0.191 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 023265 150 LVPVCISISICCSGTGFYYQ 169 (285)
Q Consensus 150 ~~~~~ly~~i~~~~~G~~lq 169 (285)
+++|.+|. +..-.+||+..
T Consensus 149 ~~~WaiYa-l~~lalayf~y 167 (509)
T 2wsw_A 149 PLPWATYS-FLSVAFAYFFF 167 (509)
T ss_dssp HHHHHTTH-HHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHH
Confidence 56899996 44455666544
Done!