Query 023265
Match_columns 285
No_of_seqs 136 out of 215
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 03:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023265.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023265hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 17.8 63 0.0046 17.8 3.1 17 115-131 11-27 (32)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 15.4 93 0.0067 21.2 4.5 27 201-230 57-83 (103)
3 d1oedb_ f.36.1.1 (B:) Acetylch 8.9 98 0.0072 24.0 3.1 75 157-239 14-90 (250)
4 d1tf3a2 g.37.1.1 (A:41-70) Tra 6.7 52 0.0038 18.1 0.1 6 272-277 16-21 (30)
5 d2zjrw1 d.59.1.1 (W:1-55) Prok 4.3 72 0.0052 20.1 -0.4 35 244-278 17-52 (55)
6 d3cx5c1 f.32.1.1 (C:262-385) M 4.3 1.4E+02 0.0099 21.6 1.3 24 225-248 30-53 (124)
7 d3cmba1 d.347.1.1 (A:1-264) Ac 4.2 1.2E+02 0.0087 24.4 0.9 15 264-278 219-233 (264)
8 d1rh5b_ f.23.28.1 (B:) Preprot 3.8 3E+02 0.022 17.2 2.5 21 42-62 16-37 (56)
9 d1ppjc1 f.32.1.1 (C:261-379) M 3.4 1.8E+02 0.013 20.8 1.2 21 225-245 30-50 (119)
10 d1oeda_ f.36.1.1 (A:) Acetylch 3.3 4.7E+02 0.034 19.4 3.9 74 157-238 14-89 (227)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.76 E-value=63 Score=17.80 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023265 115 VEEIIYGLESGILFGMA 131 (285)
Q Consensus 115 ~~a~l~G~aaG~~fG~~ 131 (285)
.-++++|.+-|+.|..-
T Consensus 11 fialffgiavgiifaik 27 (32)
T d2e74e1 11 FIALFFGIAVGIIFAIK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheeeEE
Confidence 35788999999988763
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.38 E-value=93 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=16.3
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 023265 201 LGERLPSAPTARFSLLLGWLLIMIGVVLLV 230 (285)
Q Consensus 201 LGE~l~~~~~~~~~~~~~~~~iv~Gvv~L~ 230 (285)
+||-.|.++.+. +++...++.|+..++
T Consensus 57 YGDi~P~t~~gr---~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 57 YGDLYPVTLWGR---CVAVVVMVAGITSFG 83 (103)
T ss_dssp CSSSCCCSHHHH---HHHHHHHHHHHHHHH
T ss_pred cCccccCChhHH---HHHHHHHHHHHHHHH
Confidence 478888876554 345555566655543
No 3
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.94 E-value=98 Score=24.02 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHHHHHHHHHHHHHhhhhh
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAP--TARFSLLLGWLLIMIGVVLLVSSSR 234 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~--~~~~~~~~~~~~iv~Gvv~L~~s~~ 234 (285)
+....+++|||+--.. |+ ..+... ..+.+..+=.....|.+|... ..+.+.-....++..++..+.....
T Consensus 14 ~i~~l~~~~f~~p~~~---~e--r~~l~i---t~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~~~~~v 85 (250)
T d1oedb_ 14 LISILAILVFYLPPDA---GE--KMSLSI---SALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILSVVV 85 (250)
T ss_dssp HHHHHHHHHHHHHHHC---GG--GHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheecCCC---CC--cEEeeH---HHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466899999997643 44 334332 346677777778888888532 2223333455566666666665555
Q ss_pred Hhhhc
Q 023265 235 LVRHF 239 (285)
Q Consensus 235 ~~~~~ 239 (285)
+.-||
T Consensus 86 ~~~~~ 90 (250)
T d1oedb_ 86 LNLHH 90 (250)
T ss_dssp HHHHH
T ss_pred eeeec
Confidence 55554
No 4
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=6.67 E-value=52 Score=18.14 Aligned_cols=6 Identities=50% Similarity=0.894 Sum_probs=4.2
Q ss_pred hhhHhh
Q 023265 272 TLHQLI 277 (285)
Q Consensus 272 ~~~~~~ 277 (285)
|||||-
T Consensus 16 tlhhlt 21 (30)
T d1tf3a2 16 SLHHLT 21 (30)
T ss_dssp STTHHH
T ss_pred hhhhhh
Confidence 678873
No 5
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.35 E-value=72 Score=20.10 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=26.7
Q ss_pred hhhhcc-ccccCCCccccCCCCccccchhhhhHhhc
Q 023265 244 RRIMKS-GLVRTGSQRVKDSGPSAVIPAATLHQLIT 278 (285)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (285)
++..++ +..|.+.++..+-+|+--=.-...+||++
T Consensus 17 r~tl~~LGL~k~~~~v~~~dtp~irGmi~kV~hLV~ 52 (55)
T d2zjrw1 17 VKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLE 52 (55)
T ss_dssp HHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBC
T ss_pred HHHHHHhCCCCCCCEEEeCCCHHHHHHHHhhhheEE
Confidence 333344 78999999999999987777777788765
No 6
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.32 E-value=1.4e+02 Score=21.56 Aligned_cols=24 Identities=13% Similarity=0.411 Sum_probs=15.0
Q ss_pred HHHHHhhhhhHhhhcccchhhhhc
Q 023265 225 GVVLLVSSSRLVRHFRWPSRRIMK 248 (285)
Q Consensus 225 Gvv~L~~s~~~~~~~p~~~~~~~~ 248 (285)
|+++|..|..+.-.+|..++...+
T Consensus 30 Gvl~~~~si~il~~lP~l~~s~~~ 53 (124)
T d3cx5c1 30 GVITMFAAILVLLVLPFTDRSVVR 53 (124)
T ss_dssp HHHHHHHHHHGGGGHHHHCCCSSS
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhh
Confidence 666666666666677766553333
No 7
>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase {Methanoculleus marisnigri [TaxId: 2198]}
Probab=4.24 E-value=1.2e+02 Score=24.39 Aligned_cols=15 Identities=0% Similarity=0.033 Sum_probs=12.2
Q ss_pred CccccchhhhhHhhc
Q 023265 264 PSAVIPAATLHQLIT 278 (285)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (285)
++.--|.||+||.+.
T Consensus 219 ~~~~e~~Pt~~hi~~ 233 (264)
T d3cmba1 219 ELTPMQSPAQYYIVN 233 (264)
T ss_dssp CCCTTTSTTTHHHHH
T ss_pred cCCcccccchhhccc
Confidence 666778899999874
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.79 E-value=3e+02 Score=17.19 Aligned_cols=21 Identities=5% Similarity=0.184 Sum_probs=14.0
Q ss_pred cccchhhHHHHHH-HHHHHHhh
Q 023265 42 EVMNAVDWMGITL-AGIGTIGV 62 (285)
Q Consensus 42 ~rl~~~ew~~v~l-~~~Gl~~l 62 (285)
+++++.|..-++. +++|..++
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~ 37 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLL 37 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 5689999886655 44665544
No 9
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.42 E-value=1.8e+02 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=15.2
Q ss_pred HHHHHhhhhhHhhhcccchhh
Q 023265 225 GVVLLVSSSRLVRHFRWPSRR 245 (285)
Q Consensus 225 Gvv~L~~s~~~~~~~p~~~~~ 245 (285)
|+++|..|-...-.+|..++.
T Consensus 30 Gvl~m~~si~il~~lP~l~~~ 50 (119)
T d1ppjc1 30 GVLALAFSILILALIPLLHTS 50 (119)
T ss_dssp HHHHHHHHHHGGGTHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777876553
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.26 E-value=4.7e+02 Score=19.43 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhhccCcchhHhhhHHHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHHHHHHHHHHHHHhhhhh
Q 023265 157 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAP--TARFSLLLGWLLIMIGVVLLVSSSR 234 (285)
Q Consensus 157 ~~i~~~~~G~~lqq~al~~G~~l~vs~~atva~pvvav~lGv~vLGE~l~~~~--~~~~~~~~~~~~iv~Gvv~L~~s~~ 234 (285)
+.+..++++||+--.+ |+ ..+... ..+.+..+=+....|.+|..- ..+...-....++..++.++.....
T Consensus 14 li~~ls~~~F~lp~~s---~e--Ri~l~i---t~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sli~tiiV 85 (227)
T d1oeda_ 14 LFSFLTGLVFYLPTDS---GE--KMTLSI---SVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIITVVV 85 (227)
T ss_dssp HHHHHHHHHHHHHHHC---GG--GHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheecCCC---Cc--cEEeeH---HHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHHHHHHHH
Confidence 4577999999997653 43 344433 446666666777788777421 1222233444455555555544444
Q ss_pred Hhhh
Q 023265 235 LVRH 238 (285)
Q Consensus 235 ~~~~ 238 (285)
..-|
T Consensus 86 ~~l~ 89 (227)
T d1oeda_ 86 INTH 89 (227)
T ss_dssp HHHH
T ss_pred hhee
Confidence 4333
Done!