Query 023266
Match_columns 285
No_of_seqs 196 out of 1740
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 7.1E-54 1.5E-58 376.4 32.6 261 12-274 1-261 (262)
2 KOG2620 Prohibitins and stomat 100.0 1.7E-51 3.7E-56 343.3 16.3 281 1-284 1-295 (301)
3 PRK11029 FtsH protease regulat 100.0 1.2E-46 2.7E-51 337.1 32.0 252 3-264 16-320 (334)
4 PRK10930 FtsH protease regulat 100.0 7.9E-46 1.7E-50 340.4 31.9 249 3-262 93-345 (419)
5 TIGR01932 hflC HflC protein. H 100.0 1.6E-45 3.6E-50 330.8 30.4 252 3-264 16-310 (317)
6 TIGR01933 hflK HflK protein. H 100.0 2.3E-45 5.1E-50 322.7 30.6 249 7-265 1-253 (261)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.6E-44 3.4E-49 314.1 28.4 234 7-249 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 4.9E-44 1.1E-48 315.1 28.2 239 3-249 11-265 (266)
9 COG0330 HflC Membrane protease 100.0 2.7E-40 5.8E-45 295.0 30.8 257 3-266 17-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 6.9E-40 1.5E-44 280.1 27.3 212 10-261 1-214 (215)
11 cd03401 Band_7_prohibitin Band 100.0 3.2E-38 7E-43 266.0 22.0 191 6-206 1-195 (196)
12 cd03406 Band_7_3 A subgroup of 100.0 1.2E-37 2.6E-42 272.9 26.1 193 3-198 1-209 (280)
13 cd03402 Band_7_2 A subgroup of 100.0 2.2E-35 4.7E-40 251.5 21.4 170 6-180 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 7.4E-35 1.6E-39 246.5 13.0 221 2-263 50-273 (288)
15 smart00244 PHB prohibitin homo 100.0 9.9E-31 2.2E-35 212.8 19.7 156 5-164 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 2.2E-31 4.8E-36 220.5 15.1 170 8-181 1-178 (179)
17 KOG3090 Prohibitin-like protei 100.0 8.4E-28 1.8E-32 196.9 18.6 232 3-264 34-274 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 2.9E-26 6.2E-31 187.8 11.2 236 5-266 25-266 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 2E-22 4.3E-27 171.1 16.5 159 4-164 13-206 (207)
20 KOG2962 Prohibitin-related mem 99.9 1.3E-19 2.8E-24 149.6 19.9 192 3-196 19-225 (322)
21 KOG2668 Flotillins [Intracellu 99.8 6.9E-19 1.5E-23 153.1 21.8 249 7-264 2-385 (428)
22 cd03400 Band_7_1 A subgroup of 99.8 2.8E-20 6E-25 145.4 11.9 119 46-164 2-123 (124)
23 cd03399 Band_7_flotillin Band_ 99.8 3.6E-18 7.7E-23 134.2 11.3 116 47-162 2-125 (128)
24 COG2268 Uncharacterized protei 99.7 2.9E-16 6.2E-21 146.6 21.1 187 6-194 33-244 (548)
25 cd02106 Band_7 The band 7 doma 99.7 1.4E-15 3E-20 117.2 14.0 105 58-164 14-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 1.1E-12 2.3E-17 111.2 18.5 159 5-165 14-207 (211)
27 COG4260 Membrane protease subu 99.1 5.6E-09 1.2E-13 89.5 14.9 159 6-166 40-235 (345)
28 PTZ00491 major vault protein; 98.9 4.2E-07 9E-12 89.2 21.6 156 7-163 464-651 (850)
29 cd03405 Band_7_HflC Band_7_Hfl 97.7 0.00021 4.6E-09 62.0 8.7 50 166-215 174-223 (242)
30 KOG2620 Prohibitins and stomat 97.5 0.0003 6.5E-09 60.3 6.1 48 166-213 179-226 (301)
31 PRK11029 FtsH protease regulat 97.2 0.0016 3.5E-08 59.1 8.1 42 171-212 244-285 (334)
32 PF12127 YdfA_immunity: SigmaW 97.1 0.0096 2.1E-07 51.6 11.6 104 50-160 123-228 (316)
33 TIGR01932 hflC HflC protein. H 97.1 0.0019 4.1E-08 58.5 7.7 105 122-227 178-299 (317)
34 TIGR01933 hflK HflK protein. H 96.9 0.0045 9.7E-08 54.3 8.4 92 124-216 120-221 (261)
35 PRK10930 FtsH protease regulat 96.9 0.0048 1E-07 57.7 8.9 83 124-207 216-308 (419)
36 cd03404 Band_7_HflK Band_7_Hfl 96.8 0.0062 1.3E-07 53.6 8.2 73 145-224 161-234 (266)
37 PRK13665 hypothetical protein; 96.3 0.025 5.5E-07 48.8 8.2 106 48-160 126-233 (316)
38 cd03407 Band_7_4 A subgroup of 96.3 0.016 3.4E-07 51.0 7.3 38 173-210 172-209 (262)
39 PF11978 MVP_shoulder: Shoulde 96.0 0.052 1.1E-06 41.1 7.8 95 59-153 10-116 (118)
40 COG1580 FliL Flagellar basal b 95.4 0.2 4.2E-06 40.6 9.5 80 65-152 76-157 (159)
41 COG0330 HflC Membrane protease 93.5 0.24 5.2E-06 44.0 6.8 52 172-224 179-230 (291)
42 COG2268 Uncharacterized protei 92.9 0.86 1.9E-05 43.9 9.8 59 190-250 412-470 (548)
43 PF03748 FliL: Flagellar basal 92.5 3.1 6.7E-05 30.3 10.7 53 97-151 42-96 (99)
44 PRK07718 fliL flagellar basal 91.2 1.6 3.4E-05 34.7 8.1 52 98-151 86-139 (142)
45 PRK05697 flagellar basal body- 90.3 2.4 5.3E-05 33.4 8.3 53 99-151 78-134 (137)
46 cd03401 Band_7_prohibitin Band 89.3 0.89 1.9E-05 37.8 5.5 25 193-217 171-195 (196)
47 PRK01558 V-type ATP synthase s 87.8 4.9 0.00011 33.7 9.0 48 158-205 9-58 (198)
48 KOG3083 Prohibitin [Posttransl 85.6 1.1 2.5E-05 37.9 3.9 53 153-206 179-231 (271)
49 PRK01558 V-type ATP synthase s 85.5 4.3 9.2E-05 34.1 7.5 6 256-261 121-126 (198)
50 PRK06654 fliL flagellar basal 85.4 5.5 0.00012 32.8 7.7 84 59-152 92-177 (181)
51 cd03403 Band_7_stomatin_like B 85.0 1.4 3E-05 37.2 4.4 21 189-209 156-176 (215)
52 TIGR01147 V_ATP_synt_G vacuola 85.0 7.2 0.00016 29.6 7.6 40 160-199 7-46 (113)
53 PRK02292 V-type ATP synthase s 84.8 7.5 0.00016 32.1 8.6 46 161-206 6-51 (188)
54 PRK08455 fliL flagellar basal 84.3 3 6.5E-05 34.5 5.9 53 97-151 125-179 (182)
55 PRK07021 fliL flagellar basal 83.1 4.2 9E-05 33.0 6.2 54 98-151 102-159 (162)
56 PRK12785 fliL flagellar basal 83.0 3.5 7.5E-05 33.6 5.7 53 97-151 109-163 (166)
57 COG4864 Uncharacterized protei 82.5 13 0.00028 31.6 8.8 92 62-160 140-232 (328)
58 PRK06568 F0F1 ATP synthase sub 81.8 12 0.00027 30.0 8.3 12 236-247 129-140 (154)
59 PRK05696 fliL flagellar basal 81.6 4.9 0.00011 32.8 6.1 56 96-151 108-167 (170)
60 PRK01005 V-type ATP synthase s 81.3 32 0.0007 29.1 11.3 34 170-203 28-61 (207)
61 PRK02292 V-type ATP synthase s 80.4 14 0.0003 30.6 8.5 10 241-250 100-109 (188)
62 KOG2668 Flotillins [Intracellu 77.7 13 0.00028 33.9 7.7 14 214-227 350-363 (428)
63 PLN03086 PRLI-interacting fact 77.5 3.6 7.8E-05 40.1 4.6 19 244-262 80-98 (567)
64 PTZ00491 major vault protein; 74.7 69 0.0015 32.9 12.7 21 187-207 719-739 (850)
65 PRK01005 V-type ATP synthase s 73.4 26 0.00057 29.6 8.3 36 167-202 36-71 (207)
66 PRK04057 30S ribosomal protein 72.5 36 0.00079 28.7 8.9 68 58-134 100-169 (203)
67 PF03179 V-ATPase_G: Vacuolar 68.0 9.9 0.00022 28.2 4.2 42 160-201 5-46 (105)
68 PRK08404 V-type ATP synthase s 66.5 51 0.0011 24.5 8.3 36 159-194 3-38 (103)
69 cd03406 Band_7_3 A subgroup of 66.4 17 0.00038 32.2 6.0 101 97-211 94-211 (280)
70 COG2811 NtpF Archaeal/vacuolar 60.5 71 0.0015 24.0 8.7 35 159-193 7-41 (108)
71 CHL00118 atpG ATP synthase CF0 59.5 58 0.0013 26.0 7.5 7 115-121 48-54 (156)
72 PRK08475 F0F1 ATP synthase sub 59.1 58 0.0013 26.4 7.5 31 175-205 98-128 (167)
73 PRK09098 type III secretion sy 58.7 46 0.00099 28.7 7.1 27 174-200 44-70 (233)
74 KOG3090 Prohibitin-like protei 58.6 18 0.00039 30.9 4.4 78 126-208 155-233 (290)
75 TIGR01147 V_ATP_synt_G vacuola 57.6 72 0.0016 24.2 7.2 36 173-208 9-44 (113)
76 PRK09174 F0F1 ATP synthase sub 55.4 73 0.0016 26.9 7.7 17 113-129 77-94 (204)
77 PRK06231 F0F1 ATP synthase sub 55.0 69 0.0015 27.0 7.5 10 113-122 72-81 (205)
78 PRK13461 F0F1 ATP synthase sub 54.0 80 0.0017 25.2 7.5 10 113-122 29-38 (159)
79 PF01015 Ribosomal_S3Ae: Ribos 53.7 67 0.0015 26.9 7.1 81 59-152 107-188 (194)
80 TIGR03321 alt_F1F0_F0_B altern 53.1 1.5E+02 0.0033 25.6 13.5 28 177-204 83-110 (246)
81 PRK08476 F0F1 ATP synthase sub 52.8 92 0.002 24.4 7.5 16 113-128 31-47 (141)
82 PRK13453 F0F1 ATP synthase sub 52.3 86 0.0019 25.5 7.5 17 112-128 41-58 (173)
83 COG1390 NtpE Archaeal/vacuolar 52.2 1.4E+02 0.003 25.0 9.8 10 240-249 108-117 (194)
84 PRK13454 F0F1 ATP synthase sub 51.3 96 0.0021 25.5 7.7 11 113-123 55-65 (181)
85 PRK01194 V-type ATP synthase s 51.1 1.2E+02 0.0027 25.0 8.3 9 241-249 101-109 (185)
86 PRK14472 F0F1 ATP synthase sub 50.7 93 0.002 25.3 7.5 10 113-122 42-51 (175)
87 PRK14473 F0F1 ATP synthase sub 50.5 97 0.0021 24.8 7.5 17 113-129 32-49 (164)
88 CHL00118 atpG ATP synthase CF0 49.4 1.3E+02 0.0029 23.9 9.3 7 157-163 47-53 (156)
89 PRK13460 F0F1 ATP synthase sub 49.2 1E+02 0.0022 25.0 7.5 16 113-128 40-56 (173)
90 PTZ00399 cysteinyl-tRNA-synthe 48.1 2E+02 0.0043 28.9 10.6 42 129-170 520-566 (651)
91 PRK14475 F0F1 ATP synthase sub 47.4 1.2E+02 0.0025 24.5 7.5 16 114-129 35-51 (167)
92 TIGR03321 alt_F1F0_F0_B altern 47.3 1.9E+02 0.0041 25.0 9.4 14 236-249 147-160 (246)
93 CHL00019 atpF ATP synthase CF0 45.7 1.7E+02 0.0036 24.0 10.9 20 112-131 47-67 (184)
94 PRK05759 F0F1 ATP synthase sub 45.4 1.3E+02 0.0029 23.7 7.5 9 114-122 29-37 (156)
95 PRK14474 F0F1 ATP synthase sub 45.1 2.1E+02 0.0045 24.9 13.2 14 236-249 147-160 (250)
96 PRK03963 V-type ATP synthase s 44.3 1.8E+02 0.0039 24.0 13.3 10 258-267 122-131 (198)
97 PRK07353 F0F1 ATP synthase sub 43.6 1.5E+02 0.0033 22.9 7.5 8 114-121 30-37 (140)
98 PF06188 HrpE: HrpE/YscL/FliH 43.1 1.9E+02 0.0042 24.0 10.3 24 175-198 36-59 (191)
99 PRK13428 F0F1 ATP synthase sub 42.9 2.9E+02 0.0062 26.3 10.4 15 236-250 144-158 (445)
100 PRK14474 F0F1 ATP synthase sub 42.5 2.3E+02 0.005 24.6 9.4 19 113-131 29-48 (250)
101 PRK14471 F0F1 ATP synthase sub 42.1 1.6E+02 0.0034 23.6 7.5 17 113-129 32-49 (164)
102 PRK09098 type III secretion sy 40.3 65 0.0014 27.8 5.2 27 175-203 56-82 (233)
103 PRK06569 F0F1 ATP synthase sub 39.3 2E+02 0.0044 23.1 8.7 12 238-249 122-133 (155)
104 TIGR02926 AhaH ATP synthase ar 37.9 1.4E+02 0.0031 21.0 7.3 27 167-193 7-33 (85)
105 PHA02571 a-gt.4 hypothetical p 37.6 1.8E+02 0.0038 21.9 9.6 72 174-249 25-96 (109)
106 PRK06231 F0F1 ATP synthase sub 37.3 2.5E+02 0.0054 23.6 9.4 6 157-162 73-78 (205)
107 PRK07352 F0F1 ATP synthase sub 36.9 2.3E+02 0.0049 23.0 8.6 21 109-129 39-60 (174)
108 PRK12613 galactose-6-phosphate 36.0 31 0.00066 27.4 2.3 30 126-155 12-41 (141)
109 COG1890 RPS1A Ribosomal protei 35.9 2.7E+02 0.0059 23.6 9.7 85 54-148 104-191 (214)
110 PRK15322 invasion protein OrgB 34.7 2.8E+02 0.0061 23.4 8.8 31 230-264 91-121 (210)
111 PRK14471 F0F1 ATP synthase sub 34.0 2.4E+02 0.0053 22.5 8.6 6 157-162 33-38 (164)
112 PRK08404 V-type ATP synthase s 33.7 2E+02 0.0043 21.3 7.5 17 184-200 43-59 (103)
113 PF03179 V-ATPase_G: Vacuolar 33.4 1.9E+02 0.0042 21.1 8.3 32 175-206 9-40 (105)
114 KOG1772 Vacuolar H+-ATPase V1 33.4 1.4E+02 0.003 22.4 5.2 39 160-198 7-45 (108)
115 COG4396 Mu-like prophage host- 31.0 1.1E+02 0.0024 24.0 4.5 61 71-145 94-155 (170)
116 PF06188 HrpE: HrpE/YscL/FliH 31.0 1.4E+02 0.0031 24.8 5.7 21 167-187 39-59 (191)
117 KOG2007 Cysteinyl-tRNA synthet 30.7 1.8E+02 0.0039 28.2 6.7 11 136-146 504-514 (586)
118 PRK06669 fliH flagellar assemb 30.3 3.8E+02 0.0082 23.5 8.9 24 167-190 86-109 (281)
119 PRK09173 F0F1 ATP synthase sub 30.1 2.8E+02 0.0061 22.0 8.6 9 114-122 27-35 (159)
120 CHL00019 atpF ATP synthase CF0 29.1 3.2E+02 0.0069 22.3 9.4 7 240-246 170-176 (184)
121 COG2811 NtpF Archaeal/vacuolar 28.9 2.5E+02 0.0055 21.1 6.2 21 202-222 67-87 (108)
122 PRK08475 F0F1 ATP synthase sub 28.0 3.2E+02 0.007 22.0 9.4 10 113-122 46-55 (167)
123 PRK07353 F0F1 ATP synthase sub 27.7 2.8E+02 0.0062 21.3 9.3 7 157-163 30-36 (140)
124 PRK03963 V-type ATP synthase s 26.9 3.3E+02 0.0071 22.4 7.3 13 255-267 122-134 (198)
125 TIGR01120 rpiB ribose 5-phosph 26.5 58 0.0012 25.9 2.4 23 126-148 11-33 (143)
126 KOG0994 Extracellular matrix g 26.4 8.8E+02 0.019 26.5 11.6 23 258-280 1504-1526(1758)
127 PF02502 LacAB_rpiB: Ribose/Ga 25.7 1.9E+02 0.0041 22.8 5.2 33 126-159 11-43 (140)
128 PRK06669 fliH flagellar assemb 25.5 3.9E+02 0.0085 23.4 7.9 9 186-194 94-102 (281)
129 PRK13455 F0F1 ATP synthase sub 25.3 3.8E+02 0.0082 21.9 9.3 18 113-130 51-69 (184)
130 PRK09173 F0F1 ATP synthase sub 25.0 3.5E+02 0.0076 21.4 8.7 10 154-163 24-33 (159)
131 PF05103 DivIVA: DivIVA protei 24.3 25 0.00055 26.9 0.0 7 133-139 45-51 (131)
132 COG0711 AtpF F0F1-type ATP syn 23.7 3.8E+02 0.0083 21.4 9.2 9 113-121 30-38 (161)
133 PRK13428 F0F1 ATP synthase sub 23.0 6.6E+02 0.014 23.9 9.4 18 113-130 25-43 (445)
134 TIGR00689 rpiB_lacA_lacB sugar 22.3 74 0.0016 25.3 2.3 23 126-148 10-32 (144)
135 PF10163 EnY2: Transcription f 22.3 2.6E+02 0.0057 19.8 5.0 45 92-136 31-81 (86)
136 TIGR03825 FliH_bacil flagellar 21.2 3.9E+02 0.0084 23.2 6.8 14 256-269 176-189 (255)
137 PF03780 Asp23: Asp23 family; 20.9 1.8E+02 0.0038 21.2 4.1 25 124-148 77-102 (108)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=7.1e-54 Score=376.35 Aligned_cols=261 Identities=66% Similarity=0.955 Sum_probs=247.8
Q ss_pred CCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEEEeeCCcccccCCcEEEEEEEEEEEEccchhhhhhcccC
Q 023266 12 QSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALAHKANDAFYKLS 91 (285)
Q Consensus 12 ~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~ 91 (285)
+|++|||++||++.++++||+||++||++ .....++++.++++++.+++|+|++.|.+|++++|||.||++.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~-~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLVE-TVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEecccc-ceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 58999999999999999999999999974 43458999999999998999999999999999999999987779999999
Q ss_pred ChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 023266 92 NTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR 171 (285)
Q Consensus 92 ~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae~~~ 171 (285)
++...|.+.+++++|+++|++++++++++|++|+..+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+|++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHhh
Q 023266 172 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGA 251 (285)
Q Consensus 172 ~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~ 251 (285)
++.+.+||++++..+.+|+|++++.+++|+|+|+++.+.|+|+++++..+.++++..++++++++.+..+|+|+|++++.
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876677889999999999999999997
Q ss_pred cCCCcEEEEcCCCCchhhHHHHH
Q 023266 252 ASKSSAVFIPHGPGAVRDVATQI 274 (285)
Q Consensus 252 ~~~~~~i~lp~~~~~~~~~~~~~ 274 (285)
+++ +++++|++++++..++.+|
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~ 261 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQI 261 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhc
Confidence 666 9999999999998887776
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=1.7e-51 Score=343.28 Aligned_cols=281 Identities=43% Similarity=0.643 Sum_probs=253.0
Q ss_pred CCcceEEEE--ecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEE-EeeCCcccccCCcEEEEEEEEEEE
Q 023266 1 MGNLFCCVQ--VDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQ-LDVRCETKTKDNVFVNVVASVQYR 77 (285)
Q Consensus 1 ~~~~~~~~~--V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~-~~~~~~~~T~D~~~v~v~~~v~yr 77 (285)
||..+||.+ ||+.+++|+.|||||.++++||+||++|+++ +..+..+++... ....++..|+||+.+.+|++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~d-~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVID-KIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhhh-hHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 678889988 9999999999999999999999999999986 444555544444 444469999999999999999999
Q ss_pred EccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHH
Q 023266 78 ALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHV 157 (285)
Q Consensus 78 I~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v 157 (285)
|-||.+...+|.++||+..+.+++++.+|+.++++++|.++..|++++..|.++|++.++.||++|.+..|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99987667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCC--------
Q 023266 158 KRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTT-------- 229 (285)
Q Consensus 158 ~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~-------- 229 (285)
.++|+....|+|.+++.+.++|++|+..|.+|||+++++++.++|.+..+..++.++++++-.++++.++..
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888877532
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCCCchhhHHHHHHHHHHhhhhc
Q 023266 230 ---AKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASQH 284 (285)
Q Consensus 230 ---~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
+-+++.+....+|+.++.+++ +.++++|||+++++.++|..|++.++.+.+++
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 233344555666777776665 67899999999999999999999999998764
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.2e-46 Score=337.14 Aligned_cols=252 Identities=18% Similarity=0.220 Sum_probs=226.0
Q ss_pred cceEEEEecCCeEEEEeecCceee-------EeCCcceEEcCccceeEEeeeeeeEEEEeeC-CcccccCCcEEEEEEEE
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFED-------VLEPGCHFLPWILGHQLAGHLTLRLQQLDVR-CETKTKDNVFVNVVASV 74 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~-------~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v 74 (285)
+++|+++|++||+||+++||++.+ +++||+||++||++ .+..+|+|.+.++.+ ..++|+|++.|.+|+++
T Consensus 16 l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid--~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V 93 (334)
T PRK11029 16 LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIE--TVKMLDARIQTMDNQADRFVTKEKKDLIVDSYI 93 (334)
T ss_pred HHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCce--EEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEE
Confidence 468999999999999999999986 48999999999973 467899999999998 48999999999999999
Q ss_pred EEEEccchhhhhhccc--CC---hHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHH-------------
Q 023266 75 QYRALAHKANDAFYKL--SN---TRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKA------------- 135 (285)
Q Consensus 75 ~yrI~~~~~~~~~~~~--~~---~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~------------- 135 (285)
+|||.|| ..+++.. +| +...|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 94 ~yrI~Dp--~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 94 KWRISDF--SRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred EEEECCH--HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 9999986 3444432 23 446799999999999999999999997 7999999999999964
Q ss_pred --------------------------hhhcCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023266 136 --------------------------MSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRA 189 (285)
Q Consensus 136 --------------------------l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A 189 (285)
+.+|||+|.+|.|++++||+++.++|++++.|+|++++...+|||++.+..+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a 251 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRA 251 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCC
Q 023266 190 EGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGP 264 (285)
Q Consensus 190 ~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
+|+.++.++.|+|+++++.+.|+|++++++.+.+++. .+|+ ++...+||++++++++. ++++++||.++
T Consensus 252 ~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~--~~p~---~~~~~~~lea~~~~~~~-~~~~~vl~~~~ 320 (334)
T PRK11029 252 TADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS--QDPD---FYAFIRSLRAYENSFSG-NQDVMVLSPDS 320 (334)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCHH---HHHHHHHHHHHHHHhcC-CCcEEEECCCh
Confidence 9999999999999999999999999999999999998 3565 66778999999999743 34789999875
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=7.9e-46 Score=340.37 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=223.9
Q ss_pred cceEEEEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEEEe-eCCcccccCCcEEEEEEEEEEEEccc
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLD-VRCETKTKDNVFVNVVASVQYRALAH 81 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~-~~~~~~T~D~~~v~v~~~v~yrI~~~ 81 (285)
+++|||+|+++|+|||++||++.++++||+||++||++ .+..++++.+... .+..++|+|++.|.|+++++|||.||
T Consensus 93 l~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfId--~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp 170 (419)
T PRK10930 93 AASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFID--EVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDP 170 (419)
T ss_pred HHheEEEECCCeEEEEEECCcCcceeCCceEEecCceE--EEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCH
Confidence 46899999999999999999999999999999999973 4667888765433 34689999999999999999999985
Q ss_pred hhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEEeecCCCHHHH
Q 023266 82 KANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVK 158 (285)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~v~ 158 (285)
..++|++.+++..|.+.+++++|+++|+++++++++ +|++|...+++.|++.+++| ||+|.+|.|++++||+++.
T Consensus 171 --~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~ 248 (419)
T PRK10930 171 --EKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVK 248 (419)
T ss_pred --HHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHH
Confidence 678899999999999999999999999999999998 69999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHH
Q 023266 159 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVL 238 (285)
Q Consensus 159 ~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l 238 (285)
+||++.+.|++++++.+.+||++++..+.+|+++|++.+.+|||++++..+.|+|+++++..+..+|. .+|++++.
T Consensus 249 ~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr~-- 324 (419)
T PRK10930 249 AAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITRE-- 324 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999999999988777777776 47877654
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEcC
Q 023266 239 VTQYFDTMKEIGAASKSSAVFIPH 262 (285)
Q Consensus 239 ~~~~le~l~~~~~~~~~~~i~lp~ 262 (285)
+.|||+|++++. +.++|++..
T Consensus 325 -RlYletme~vl~--~~~kvivd~ 345 (419)
T PRK10930 325 -RLYIETMEKVLG--HTRKVLVND 345 (419)
T ss_pred -HHHHHHHHHHHc--cCCEEEEeC
Confidence 579999999974 334444443
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.6e-45 Score=330.76 Aligned_cols=252 Identities=14% Similarity=0.182 Sum_probs=224.5
Q ss_pred cceEEEEecCCeEEEEeecCceeeEe-------CCcceEEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEE
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFEDVL-------EPGCHFLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASV 74 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~~-------~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v 74 (285)
+++||++|++||+||+++||++.++. +||+||++||+ +.+..+|++.+.++.+. .++|+|+++|.+++++
T Consensus 16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i--~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V 93 (317)
T TIGR01932 16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFI--EHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI 93 (317)
T ss_pred HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccc--cEEEEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence 57899999999999999999998654 79999999997 45678999999999864 8999999999999999
Q ss_pred EEEEccchhhhhhcccC--C---hHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHH------------------------
Q 023266 75 QYRALAHKANDAFYKLS--N---TRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEI------------------------ 124 (285)
Q Consensus 75 ~yrI~~~~~~~~~~~~~--~---~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i------------------------ 124 (285)
+|||.|| .+++++++ + ++..|.+.+++++|+++|+++++++++ +|++|
T Consensus 94 ~yrV~d~--~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 94 RWRIEDF--KKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEEECCH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 9999984 56776654 3 566799999999999999999999997 46555
Q ss_pred -----HHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHc
Q 023266 125 -----AKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLS 199 (285)
Q Consensus 125 -----~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~ 199 (285)
...+.+.+.+.+.+|||+|.+|.|++++||+++.++|++++.|+|++++...++|+++.+..+.|+|++++.++.
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ 251 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKIL 251 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCC
Q 023266 200 GLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGP 264 (285)
Q Consensus 200 Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
|+|++++..+.|+|++++++.+.+++. .+|+. +-.++|||+++++++ ++++++++|.++
T Consensus 252 aeA~a~a~~~~Aegea~a~~~~~~a~~--~~p~~---~~~~~~le~~~~~~~-~~~~~~vl~~~~ 310 (317)
T TIGR01932 252 SEAYRTARIIKGEGDAEAAKIYSDAYG--KDPEF---YSFWRSLEAYEKSFK-DNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc--cCHHH---HHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence 999999999999999999999999998 46664 445799999999974 355689999875
No 6
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=2.3e-45 Score=322.66 Aligned_cols=249 Identities=19% Similarity=0.273 Sum_probs=224.2
Q ss_pred EEEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEE-EeeCCcccccCCcEEEEEEEEEEEEccchhhh
Q 023266 7 CVQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQ-LDVRCETKTKDNVFVNVVASVQYRALAHKAND 85 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~-~~~~~~~~T~D~~~v~v~~~v~yrI~~~~~~~ 85 (285)
+++|++||+||+++||++.++++||+||++||+ ..++.+|++... +.-+..++|+|++.|.++++++|||.|| ..
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i--~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~--~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFI--EEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDP--YK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCc--eEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCH--HH
Confidence 589999999999999999999999999999997 346788987544 2223368999999999999999999985 57
Q ss_pred hhcccCChHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEEeecCCCHHHHHHHH
Q 023266 86 AFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDEHVKRAMN 162 (285)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~v~~ai~ 162 (285)
++|++.++...|.+.+++++|+++|+++++++++ +|++|++.+.+.+++.++.| ||+|++|.|++++||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 7899999999999999999999999999999998 89999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHH
Q 023266 163 EINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQY 242 (285)
Q Consensus 163 ~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~ 242 (285)
+++.|++++++.+.+||++++..+.+|++++++.++.|+|++++..+.|+|+++++..+.+++. .+|++ +...+|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~--~~p~~---~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYK--KAPDV---TRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hChHH---HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 45664 455689
Q ss_pred HHHHHHHhhcCCCcEEEEcCCCC
Q 023266 243 FDTMKEIGAASKSSAVFIPHGPG 265 (285)
Q Consensus 243 le~l~~~~~~~~~~~i~lp~~~~ 265 (285)
+|+++++.. +++++++++.+++
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~~ 253 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKGN 253 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCCC
Confidence 999999973 4566778876543
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.6e-44 Score=314.11 Aligned_cols=234 Identities=20% Similarity=0.240 Sum_probs=214.4
Q ss_pred EEEecCCeEEEEeecCceee-EeCCcceEEcCccceeEEeeeeeeEEEEeeC-CcccccCCcEEEEEEEEEEEEccchhh
Q 023266 7 CVQVDQSTVAIKERFGKFED-VLEPGCHFLPWILGHQLAGHLTLRLQQLDVR-CETKTKDNVFVNVVASVQYRALAHKAN 84 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~-~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v~yrI~~~~~~ 84 (285)
||+|++||+||+++||++.+ +++||+||++||++ .++.+|++.+.++.+ ..++|+|++++.+++++.|||.|| .
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~--~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQ--QVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcc--eEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence 58999999999999999987 68999999999973 478899999998875 589999999999999999999985 4
Q ss_pred hhhcccCChH----HHHHHHHHHHHHHHccCCcHHHHHhh-HHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHH
Q 023266 85 DAFYKLSNTR----TQIQAYVFDVIRASIPKLNLDDAFEQ-KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKR 159 (285)
Q Consensus 85 ~~~~~~~~~~----~~l~~~~~~~lr~vi~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ 159 (285)
.+++++.++. ..|.+.+++.+|++++++++++++++ |++|++.+++.|++.+.+|||+|.+|.|++|+||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 6776766543 67999999999999999999999986 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHH
Q 023266 160 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLV 239 (285)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~ 239 (285)
+|++++.|+|++.+.+.+||+++++.++.|++++++.++.|+|+|++..+.|+|++++++.+.+++. .+|++ +..
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~--~~p~~---~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG--KDPEF---YAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCHHH---HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 47774 445
Q ss_pred HHHHHHHHHH
Q 023266 240 TQYFDTMKEI 249 (285)
Q Consensus 240 ~~~le~l~~~ 249 (285)
.++|++++..
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 6899998764
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=4.9e-44 Score=315.12 Aligned_cols=239 Identities=25% Similarity=0.298 Sum_probs=213.8
Q ss_pred cceEEEEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEE----------EE--ee-CCcccccCCcEEE
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQ----------QL--DV-RCETKTKDNVFVN 69 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~----------~~--~~-~~~~~T~D~~~v~ 69 (285)
+++||++|++||+|||++||++.++++||+||++||++ ..+..++++.+ .. .. +..++|+|+..|.
T Consensus 11 ~~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~ 89 (266)
T cd03404 11 LLSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPI-EVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVD 89 (266)
T ss_pred HHcEEEEECCCceEEeEEcCccccccCCceeEecCCCc-EEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEE
Confidence 46899999999999999999999999999999999974 33344444221 11 11 2478999999999
Q ss_pred EEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhh-HHHHHHHHHHHHHHHhhhc--CeEEEEE
Q 023266 70 VVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQ-KNEIAKAVEEELEKAMSAY--GYEIVQT 146 (285)
Q Consensus 70 v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~--Gi~v~~v 146 (285)
+++++.|||.|| ..++|+..+++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||+|.+|
T Consensus 90 vd~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v 167 (266)
T cd03404 90 VEFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGV 167 (266)
T ss_pred EEEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEE
Confidence 999999999986 4678889999999999999999999999999999996 9999999999999999977 9999999
Q ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 023266 147 LIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVP 226 (285)
Q Consensus 147 ~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~ 226 (285)
.|++++||+++.++|++++.|++++++.+.+|+++++..+..|+|+|++.++.|+|++++..+.|+|++++++.+..++.
T Consensus 168 ~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~ 247 (266)
T cd03404 168 NLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYK 247 (266)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhhhHHHHHHHHHHHHHHHH
Q 023266 227 GTTAKDVMDMVLVTQYFDTMKEI 249 (285)
Q Consensus 227 ~~~~~~~~~~~l~~~~le~l~~~ 249 (285)
. +|++ .+...|+++|+++
T Consensus 248 ~--~~~~---~~~~~~~~~~~~~ 265 (266)
T cd03404 248 K--APDV---TRERLYLETMEEV 265 (266)
T ss_pred h--ChHH---HHHHHHHHHHHHh
Confidence 4 5664 3556799999886
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=295.00 Aligned_cols=257 Identities=30% Similarity=0.427 Sum_probs=232.9
Q ss_pred cceEEEEecCCeEEEEeecCceeeEeC-CcceEEcCc---cceeEEeeeeeeEEEEee-C-CcccccCCcEEEEEEEEEE
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFEDVLE-PGCHFLPWI---LGHQLAGHLTLRLQQLDV-R-CETKTKDNVFVNVVASVQY 76 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~~~~~-pG~h~~~P~---i~~~~~~~v~~r~~~~~~-~-~~~~T~D~~~v~v~~~v~y 76 (285)
+++++++|++++.+++++||++.++++ ||+||++|| +. .....++.+.++++. + ..++|+|+..|.+|++++|
T Consensus 17 ~~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~-~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~ 95 (291)
T COG0330 17 LFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIE-EVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQY 95 (291)
T ss_pred HHceeEEEcCCceEEEEEecceeeecCCCceEEEcCCcccee-eeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEE
Confidence 467899999999999999999999998 999999999 43 345678888999998 4 5999999999999999999
Q ss_pred EEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHH-HHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCH
Q 023266 77 RALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKN-EIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDE 155 (285)
Q Consensus 77 rI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 155 (285)
||.|| ..++|++.+++..+.+.+++.+|+++|++++++++++|+ .|+..+.+.|++.+++|||.|.+|.|++++||+
T Consensus 96 rv~d~--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ 173 (291)
T COG0330 96 RVTDP--QKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPE 173 (291)
T ss_pred EEcCH--HHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCH
Confidence 99996 588999999999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHH
Q 023266 156 HVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMD 235 (285)
Q Consensus 156 ~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~ 235 (285)
++..+|++++.|++++++.+.+||++++..+.+|+|++++.++.+||.+++ +.+++|++++++.+.+++.++ ...+
T Consensus 174 ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~~---~~~~ 249 (291)
T COG0330 174 EVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALREA---PAAP 249 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhcccc---cchh
Confidence 999999999999999999999999999999999999999999999999988 666666666888888887743 2234
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEcCCCCc
Q 023266 236 MVLVTQYFDTMKEIGAASKSSAVFIPHGPGA 266 (285)
Q Consensus 236 ~~l~~~~le~l~~~~~~~~~~~i~lp~~~~~ 266 (285)
.+...+|++.+.+.+.+++++++++|.+..+
T Consensus 250 ~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 250 QALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 7788999999999988778999999987655
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=6.9e-40 Score=280.05 Aligned_cols=212 Identities=30% Similarity=0.391 Sum_probs=183.6
Q ss_pred ecCCeEEEEeecCceeeEeCCcceEEcCccceeEE-eeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhh
Q 023266 10 VDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLA-GHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAF 87 (285)
Q Consensus 10 V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~-~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~ 87 (285)
|++||+||+++||++.++++||+||++||+ ..+ +.+|++.++++++. .+.|+|++++.+++++.|||.|| ..++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~--~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~~~~ 76 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFI--DRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDP--VKAV 76 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccc--eEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecH--HHHH
Confidence 789999999999999999999999999997 345 88999999999965 79999999999999999999885 5678
Q ss_pred cccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 023266 88 YKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167 (285)
Q Consensus 88 ~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~A 167 (285)
+.+.++...|.+.+++++|++++++++++++++|+++++.+++.|++.+.+|||+|.+|.|++++||+++.++|++++.|
T Consensus 77 ~~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A 156 (215)
T cd03403 77 YGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEA 156 (215)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHH
Q 023266 168 ARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMK 247 (285)
Q Consensus 168 e~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~ 247 (285)
++++++.+ .+|+|++++.+++|+|+++.. .++ ..+.++++++++
T Consensus 157 ~~~~~a~i-----------~~A~ge~~a~~~~aea~~~~~---------------------~~~----~~~~~~~~e~~~ 200 (215)
T cd03403 157 EREKRAKI-----------IEAEGERQAAILLAEAAKQAA---------------------INP----AALQLRELETLE 200 (215)
T ss_pred HHHHHHHH-----------HHhHHHHHHHHHHHHHHHHHc---------------------cCH----HHHHHHHHHHHH
Confidence 98776544 445555555555555554321 112 556689999999
Q ss_pred HHhhcCCCcEEEEc
Q 023266 248 EIGAASKSSAVFIP 261 (285)
Q Consensus 248 ~~~~~~~~~~i~lp 261 (285)
.++++++.++++.|
T Consensus 201 ~~~~~~~~~~~~~~ 214 (215)
T cd03403 201 EIAKEAASTVVFPA 214 (215)
T ss_pred HHHhccCCeEEeeC
Confidence 99988887777766
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=3.2e-38 Score=266.01 Aligned_cols=191 Identities=18% Similarity=0.248 Sum_probs=164.7
Q ss_pred EEEEecCCeEEEEeecCceee--EeCCcceEEcCccceeEEeeeeeeEEEEeeCCcccccCCcEEEEEEEEEEEEccchh
Q 023266 6 CCVQVDQSTVAIKERFGKFED--VLEPGCHFLPWILGHQLAGHLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALAHKA 83 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~--~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
||++|++|++||+++||+... +++||+||++||++ .++.+|++.+.++++..+.|+|++.|++++++.|++.++++
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~--~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQ--KPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccc--eeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 689999999999999998764 89999999999973 47789999999998889999999999999999999986555
Q ss_pred hhhhcccC-C-hHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHH
Q 023266 84 NDAFYKLS-N-TRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 84 ~~~~~~~~-~-~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai 161 (285)
...+..++ + .+..|.+.+++++|+++|+++++|++++|++|+..|++.+++.+.+|||.|.+|.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 54544333 3 456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHH
Q 023266 162 NEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 206 (285)
Q Consensus 162 ~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a 206 (285)
++++.|+++.+++. ..+.+|+++|++.+++|+|+|++
T Consensus 159 ~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 159 EAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999876432 23445667777777777777653
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.2e-37 Score=272.89 Aligned_cols=193 Identities=17% Similarity=0.221 Sum_probs=170.8
Q ss_pred cceEEEEecCCeEEEEeecCcee-eEeCCcceEEcCccceeEEeeeeeeEEEEeeC-CcccccCCcEEEEEE-EEEEEEc
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFE-DVLEPGCHFLPWILGHQLAGHLTLRLQQLDVR-CETKTKDNVFVNVVA-SVQYRAL 79 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~-~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~-~v~yrI~ 79 (285)
+++|+++|++||+||+++||++. .+++|||||++||+ ..+..++++.++.+.+ ..+.|+||+.|.+|. .++|+++
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfI--d~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivd 78 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFI--TTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLI 78 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCc--eEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecC
Confidence 46899999999999999999986 57899999999997 3456789999888875 688999999999995 4666666
Q ss_pred cchhhhhh--cccCChHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEEeecCCC
Q 023266 80 AHKANDAF--YKLSNTRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPD 154 (285)
Q Consensus 80 ~~~~~~~~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p 154 (285)
+...+..+ |...+....|.+.+++++|+++|+++++++++ +|+++...+++.+++.+++| ||+|.+|.|++++||
T Consensus 79 p~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P 158 (280)
T cd03406 79 PDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIP 158 (280)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCC
Confidence 54444444 45567788999999999999999999999998 89999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHHH
Q 023266 155 EHVKRAMNEINAAARLRV--------AANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 155 ~~v~~ai~~~~~Ae~~~~--------a~~~~Aeae~~~~i~~A~aeaea~~~ 198 (285)
+++.++| ++|.|||++. +.+.+||++|++.+.+|+|+|+-..+
T Consensus 159 ~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 159 EAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred HHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 9999998 7999999999 99999999999999999999986544
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.2e-35 Score=251.55 Aligned_cols=170 Identities=14% Similarity=0.284 Sum_probs=158.1
Q ss_pred EEEEecCCeEEEEeecCceeeEe-CCcceEEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchh
Q 023266 6 CCVQVDQSTVAIKERFGKFEDVL-EPGCHFLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKA 83 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~~-~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
|+++|+|||.||+++||++.++. +||+||++||++ ...+|+|.++++.+. .++|+|+.++.++++++|||.||
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~---~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp-- 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSS---KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDT-- 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccce---EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCH--
Confidence 68999999999999999999875 999999999973 367999999998875 79999999999999999999985
Q ss_pred hhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHh-------hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHH
Q 023266 84 NDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFE-------QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
.+++|++.|+...|.+.+++++|+++|+++++++++ +|++|+.++++.+++.++.|||+|.+|.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 588899999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023266 157 VKRAMNEINAAARLRVAANEKAEA 180 (285)
Q Consensus 157 v~~ai~~~~~Ae~~~~a~~~~Aea 180 (285)
+.++|.++++|+++..|+...+++
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998887776665
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=7.4e-35 Score=246.48 Aligned_cols=221 Identities=24% Similarity=0.332 Sum_probs=186.0
Q ss_pred CcceEEEEecCCeEEEEeecCceee--EeCCcceEEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEE
Q 023266 2 GNLFCCVQVDQSTVAIKERFGKFED--VLEPGCHFLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRA 78 (285)
Q Consensus 2 ~~~~~~~~V~~ge~~Vv~~~Gk~~~--~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI 78 (285)
+.|+|+++|++.|++|++|+|+... ..|||+.|++|+|+ ...++|+|++.+++|+ +++|+|.+.+.||++++|||
T Consensus 50 S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCID--t~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri 127 (288)
T KOG2621|consen 50 SIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCID--TFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI 127 (288)
T ss_pred HHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccc--eeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe
Confidence 5689999999999999999999975 77999999999985 4679999999999986 99999999999999999999
Q ss_pred ccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHH
Q 023266 79 LAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVK 158 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~ 158 (285)
.|| ...+.+++|.....+-+.++.+|+++|+.++.|++++|+.|+.++...|++....|||+|++|+|+||++|.+.+
T Consensus 128 ~dp--i~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlq 205 (288)
T KOG2621|consen 128 SDP--IIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQ 205 (288)
T ss_pred cCH--HHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhh
Confidence 995 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHH
Q 023266 159 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVL 238 (285)
Q Consensus 159 ~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l 238 (285)
++|.....|.++..+.+..||+|+. +-++ ++++ +..+. ++| ..+
T Consensus 206 ramaaeAeA~reA~Akviaaege~~----------------------as~a----l~~a----a~v~~--~sp----~al 249 (288)
T KOG2621|consen 206 RAMAAEAEATREARAKVIAAEGEKK----------------------ASEA----LKEA----ADVIS--ESP----IAL 249 (288)
T ss_pred hhhhchhhhhhhhhhhHHHHHhhhH----------------------HHHH----HHHh----hcccc--CCc----hhh
Confidence 9988766666665554444444332 2111 1111 11111 244 446
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEcCC
Q 023266 239 VTQYFDTMKEIGAASKSSAVFIPHG 263 (285)
Q Consensus 239 ~~~~le~l~~~~~~~~~~~i~lp~~ 263 (285)
+.+||++|..++ +.+++|+++|.+
T Consensus 250 qLryLqtl~sia-~e~~~tivfP~p 273 (288)
T KOG2621|consen 250 QLRYLQTLNSIA-AEKNSTIVFPLP 273 (288)
T ss_pred hhhhhhcchhhh-cCCCCCcccCCC
Confidence 789999999996 577899999976
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.97 E-value=9.9e-31 Score=212.85 Aligned_cols=156 Identities=32% Similarity=0.452 Sum_probs=145.1
Q ss_pred eEEEEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchh
Q 023266 5 FCCVQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKA 83 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~ 83 (285)
+||++|++||+||+++||++.++++||+||++||+ ..++.++++.+.+..+. .+.|+|++++.+++++.|||.||
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~-- 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFI--DRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDP-- 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecce--eEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccH--
Confidence 48999999999999999999999999999999996 45678999999998875 88999999999999999999986
Q ss_pred hhhhcccCChH-HHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHH
Q 023266 84 NDAFYKLSNTR-TQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAM 161 (285)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai 161 (285)
..++++..+++ ..|.+.+++++|+++++++++++++ +|+++++.+++.+++.+++||++|.+|.|+++++|+++.++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 45677777877 4899999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHH
Q 023266 162 NEI 164 (285)
Q Consensus 162 ~~~ 164 (285)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 876
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=2.2e-31 Score=220.51 Aligned_cols=170 Identities=32% Similarity=0.467 Sum_probs=118.4
Q ss_pred EEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEEEeeCC---cccccCCcEEEEEEEEEEEEccchhh
Q 023266 8 VQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRC---ETKTKDNVFVNVVASVQYRALAHKAN 84 (285)
Q Consensus 8 ~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~---~~~T~D~~~v~v~~~v~yrI~~~~~~ 84 (285)
++|++||+||++++|++..+++||+||++||+ ..++.+|++.++++++. .+.|+|++++.+++++.|||.++ .
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~--~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFI--QKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDP--P 76 (179)
T ss_dssp -------------------------------E--EE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-C--C
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCc--CeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechH--H
Confidence 58999999999999999999999999999985 55778999999999987 99999999999999999999663 5
Q ss_pred hhhccc----CChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHH
Q 023266 85 DAFYKL----SNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.++.++ .+++..|++.+++++|++++++++++++++|.++.+.+++.|++.+.+|||+|.+|.|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 566666 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH
Q 023266 161 MNEINAAARLR-VAANEKAEAE 181 (285)
Q Consensus 161 i~~~~~Ae~~~-~a~~~~Aeae 181 (285)
|.++..|++++ +++..+||+|
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999988 6666666554
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.4e-28 Score=196.91 Aligned_cols=232 Identities=22% Similarity=0.293 Sum_probs=190.1
Q ss_pred cceEEEEecCCeEEEEe-ecCcee-eEeCCcceEEcCccceeEEeeeeeeEEEEeeCCcccccCCcEEEEEEEEEEEEcc
Q 023266 3 NLFCCVQVDQSTVAIKE-RFGKFE-DVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALA 80 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~-~~Gk~~-~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~~ 80 (285)
.-.|+|.|+-||++|++ |+|.++ +++..|+||.+||+ +..+.+|.|-++..+....-|+|-..|++...+.-|...
T Consensus 34 v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwf--e~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~ 111 (290)
T KOG3090|consen 34 VTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWF--ERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA 111 (290)
T ss_pred ecceeEeecCCceEEEEeccccchhccccCCceEeeecc--ccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCCh
Confidence 44689999999999997 477776 68899999999997 346789999999999889999999999999999988887
Q ss_pred chhhhhhcccC-ChH-HHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHH
Q 023266 81 HKANDAFYKLS-NTR-TQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVK 158 (285)
Q Consensus 81 ~~~~~~~~~~~-~~~-~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~ 158 (285)
...+..+.+++ |++ +.|-+++.+.++.++++|+..++++.|+.++..|++.|-++..++.|-+++|.|+.+.|.+++.
T Consensus 112 ~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efT 191 (290)
T KOG3090|consen 112 DQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFT 191 (290)
T ss_pred hhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHH
Confidence 66677776664 565 5678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHH
Q 023266 159 RAMNEINAAARLRVAA---NEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMD 235 (285)
Q Consensus 159 ~ai~~~~~Ae~~~~a~---~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~ 235 (285)
.+++.|+.|.|+++++ .++|+.+++..+.+|+|||+++.+.+|| .+ +++
T Consensus 192 aAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA-----------i~-------------nn~---- 243 (290)
T KOG3090|consen 192 AAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA-----------IK-------------NNP---- 243 (290)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH-----------Hh-------------CCc----
Confidence 9999999999998865 3456666666665555555555554443 32 233
Q ss_pred HHHHHHHHHHHHHHhh--cCCCcEEEEcCCC
Q 023266 236 MVLVTQYFDTMKEIGA--ASKSSAVFIPHGP 264 (285)
Q Consensus 236 ~~l~~~~le~l~~~~~--~~~~~~i~lp~~~ 264 (285)
-++..+-+++-++++. +...|.+||+++.
T Consensus 244 ~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 244 AFITLRKIEAAREIAQTIASSANKVYLSSDD 274 (290)
T ss_pred cceeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence 3455677888888763 4567889999873
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-26 Score=187.78 Aligned_cols=236 Identities=15% Similarity=0.255 Sum_probs=189.1
Q ss_pred eEEEEecCCeEEEEee-cCcee-eEeCCcceEEcCccceeEEeeeeeeEEEEeeCCcccccCCcEEEEEEEEEEEEccch
Q 023266 5 FCCVQVDQSTVAIKER-FGKFE-DVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALAHK 82 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~-~Gk~~-~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~~~~ 82 (285)
+++|.|+-|+++|++. |-.+. .+.+.|.||.+||. +..+.+|.|.++.+++...-|||-..|++...+.||.....
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~--qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq 102 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWV--QKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ 102 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeeec--cCcEEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence 5789999999999963 44444 47899999999997 45678899999989888999999999999999999998877
Q ss_pred hhhhhcccC-ChHH-HHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHH
Q 023266 83 ANDAFYKLS-NTRT-QIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 83 ~~~~~~~~~-~~~~-~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.+..|.+++ +|++ .|-.+..+.+++++++++..++++.|+-++..+++.|.++...+|+.+++|.|+.+.+.++..++
T Consensus 103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A 182 (271)
T KOG3083|consen 103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA 182 (271)
T ss_pred cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence 788887775 5554 57777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHH
Q 023266 161 MNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVT 240 (285)
Q Consensus 161 i~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~ 240 (285)
++.|+.|+|++++... .+..|+-++.+..+.|||++++.+.++.+++.+ +. -++..
T Consensus 183 vE~KQVAQQEAErarF--------vVeKAeQqk~aavIsAEGds~aA~li~~sla~a------------G~----gLiel 238 (271)
T KOG3083|consen 183 VEAKQVAQQEAERARF--------VVEKAEQQKKAAVISAEGDSKAAELIANSLATA------------GD----GLIEL 238 (271)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHhhhhhhheeecccchHHHHHHHHHHhhc------------CC----ceeee
Confidence 9999999999886432 233344444455555555555555555555442 22 33445
Q ss_pred HHHHHHHHHh--hcCCCcEEEEcCCCCc
Q 023266 241 QYFDTMKEIG--AASKSSAVFIPHGPGA 266 (285)
Q Consensus 241 ~~le~l~~~~--~~~~~~~i~lp~~~~~ 266 (285)
+.+|+-++++ .+.+.++.|+|.+.+.
T Consensus 239 rrlEAa~dia~~Ls~s~nv~YLp~g~s~ 266 (271)
T KOG3083|consen 239 RRLEAAEDIAYQLSRSRNVTYLPAGQSM 266 (271)
T ss_pred hhhhhHHHHHHHHhcCCCceeccCCcce
Confidence 7788888886 3567889999976543
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.90 E-value=2e-22 Score=171.11 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=134.2
Q ss_pred ceEEEEecCCeEEEEeecCceeeEeCCcceEEc----Cccc-------------eeEEeeeeeeEEEEeeC-------Cc
Q 023266 4 LFCCVQVDQSTVAIKERFGKFEDVLEPGCHFLP----WILG-------------HQLAGHLTLRLQQLDVR-------CE 59 (285)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~----P~i~-------------~~~~~~v~~r~~~~~~~-------~~ 59 (285)
+.|.++|++||+||++++|++.++++||.|+.+ |++. ...++.++++.+..... ..
T Consensus 13 ~~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd03408 13 NGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGR 92 (207)
T ss_pred cCCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeee
Confidence 568999999999999999999999999888765 3321 12366788887765321 24
Q ss_pred ccccCCcEEEEEEEEEEEEccchhhhhhcccC---------ChHHHHHHHHHHHHHHHccCCcHHHHHhh--HHHHHHHH
Q 023266 60 TKTKDNVFVNVVASVQYRALAHKANDAFYKLS---------NTRTQIQAYVFDVIRASIPKLNLDDAFEQ--KNEIAKAV 128 (285)
Q Consensus 60 ~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~---------~~~~~l~~~~~~~lr~vi~~~~~~ei~~~--R~~i~~~i 128 (285)
..|+|++++.+++++.|||.|| ..++.++. +....|.+.+++++|++++++++++++.+ |++|++.+
T Consensus 93 ~~~~~~v~v~v~~~~~~kI~Dp--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 93 DSEFGGVPLRAFGTYSLKVTDP--VLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCccceEEEEeeEEEEEEEcCH--HHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 5688999999999999999986 45554442 45678999999999999999999999986 99999999
Q ss_pred HHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHH
Q 023266 129 EEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 129 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~ 164 (285)
++.+++.+.+||++|.+|.|++|+||++++++|.++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999998864
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=149.58 Aligned_cols=192 Identities=16% Similarity=0.197 Sum_probs=146.5
Q ss_pred cceEEEEecCCeEEEEeecCcee-eEeCCcceEEcCccceeEEeeeeeeEEEEeeC-CcccccCCcEEEEEEE-EEEEEc
Q 023266 3 NLFCCVQVDQSTVAIKERFGKFE-DVLEPGCHFLPWILGHQLAGHLTLRLQQLDVR-CETKTKDNVFVNVVAS-VQYRAL 79 (285)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~~Gk~~-~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~-v~yrI~ 79 (285)
+.+++..|++||+||.+|-|-.. .+.+||+|..+||+ ..+..+.+..|+-++. ..|.|+.|+.+.+|-. +.-+..
T Consensus 19 ~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFi--Tt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~ 96 (322)
T KOG2962|consen 19 LSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFI--TTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLR 96 (322)
T ss_pred HHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeee--eceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhc
Confidence 34667789999999999999876 46799999999997 3456677777777766 4899999999977632 222222
Q ss_pred cchhhhhhcc--cCChHHHHHHHHHHHHHHHccCCcHHHHHh-hHHHHHHHHHHHHHHHhhhc--CeEEEEEEEeecCCC
Q 023266 80 AHKANDAFYK--LSNTRTQIQAYVFDVIRASIPKLNLDDAFE-QKNEIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPD 154 (285)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p 154 (285)
+...+..+.+ ++....+|.+.+...+...|+.+++.+++- -.+.|.+++++.|++.+..+ |++|..|+++....|
T Consensus 97 ~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIP 176 (322)
T KOG2962|consen 97 PDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIP 176 (322)
T ss_pred hhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCCh
Confidence 2223333333 333345789999999999999999999975 78999999999999999998 999999999999999
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 023266 155 EHVKRAMNE-------INAAARLRVAANEKAEAEKILQIKRAEGEAESK 196 (285)
Q Consensus 155 ~~v~~ai~~-------~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~ 196 (285)
+.+++.++. ...|.+.+.-.+.+||.++...+++||..|+-.
T Consensus 177 EaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa 225 (322)
T KOG2962|consen 177 EAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVA 225 (322)
T ss_pred HHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999887763 222334444456778888888888887766543
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.84 E-value=6.9e-19 Score=153.13 Aligned_cols=249 Identities=17% Similarity=0.130 Sum_probs=182.1
Q ss_pred EEEecCCeEEEEeecCceeeEeCCcceEEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhh
Q 023266 7 CVQVDQSTVAIKERFGKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKAND 85 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~ 85 (285)
|++..+++..++..+|.-...+-+|- |.+|| +.+..+|+...++++.. .+.|+.|+|+.|.+..+..|.-.++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~~-wvf~w---q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKKS-WVFPW---QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceecccc-eeeee---eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 56678889999988886554444432 44488 55788999999999886 499999999999998888775433222
Q ss_pred hh-cc----c----CChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCH-
Q 023266 86 AF-YK----L----SNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDE- 155 (285)
Q Consensus 86 ~~-~~----~----~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 155 (285)
.+ |. + .+....+...+.+..|.+++++|++++|.+|.+|.+.+++-.+..+.+.||.|.+..|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 21 11 1 23445677888899999999999999999999999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHHHHHH--------------------------------------------------------------
Q 023266 156 -HVKRAMNEINAAARLRV-------------------------------------------------------------- 172 (285)
Q Consensus 156 -~v~~ai~~~~~Ae~~~~-------------------------------------------------------------- 172 (285)
++..++.++.+|+-.+.
T Consensus 158 ~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lA 237 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLA 237 (428)
T ss_pred hHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHH
Confidence 68888773332221110
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHhhcchHHHHH
Q 023266 173 -------------------------------------------------------AANEKAEAEKILQIKRAEGEAESKY 197 (285)
Q Consensus 173 -------------------------------------------------------a~~~~Aeae~~~~i~~A~aeaea~~ 197 (285)
.....||+++...+..|+|||+..+
T Consensus 238 yelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~ir 317 (428)
T KOG2668|consen 238 YELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIR 317 (428)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012235666677778888888888
Q ss_pred HcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHhh------cCCCcEEEEcCCC
Q 023266 198 LSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGA------ASKSSAVFIPHGP 264 (285)
Q Consensus 198 ~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~------~~~~~~i~lp~~~ 264 (285)
.+++|+|.+..+.|.++++.++....++..|.....+ ...|++|+.++. ++-+++.++.+|+
T Consensus 318 k~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l-----~~lLealp~Ia~~ia~plaktnkI~v~s~g~ 385 (428)
T KOG2668|consen 318 KQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYL-----RTLLEALPMIAAEIAAPLAKTNKISVWSHGG 385 (428)
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHhccchhhcCeEEEEecCC
Confidence 8888888888888888888888888777766544333 345788887752 2344566666653
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.84 E-value=2.8e-20 Score=145.37 Aligned_cols=119 Identities=22% Similarity=0.377 Sum_probs=107.4
Q ss_pred eeeeeEEEEeeCCcccccCCcEEEEEEEEEEEEccchhhhhhcccC-C-hHHHHHHHHHHHHHHHccCCcHHHHHh-hHH
Q 023266 46 HLTLRLQQLDVRCETKTKDNVFVNVVASVQYRALAHKANDAFYKLS-N-TRTQIQAYVFDVIRASIPKLNLDDAFE-QKN 122 (285)
Q Consensus 46 ~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~-~-~~~~l~~~~~~~lr~vi~~~~~~ei~~-~R~ 122 (285)
.+++|.++.+.+..++|+|++.+.+++++.|||.+++++..+.+++ + .+..|.+.+++++|+++|+++++++++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 3688888888889999999999999999999999877655555543 2 445799999999999999999999997 899
Q ss_pred HHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHH
Q 023266 123 EIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 123 ~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~ 164 (285)
+|.+.+++.+++.+.+|||+|.+|.|++++||+++.++|++|
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999976
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.77 E-value=3.6e-18 Score=134.16 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=101.2
Q ss_pred eeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchh--hhhhccc-----CChHHHHHHHHHHHHHHHccCCcHHHHH
Q 023266 47 LTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKA--NDAFYKL-----SNTRTQIQAYVFDVIRASIPKLNLDDAF 118 (285)
Q Consensus 47 v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~--~~~~~~~-----~~~~~~l~~~~~~~lr~vi~~~~~~ei~ 118 (285)
+++|.+.++++. .++|+|++++.+++++.|||.||.. ...+.++ .+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 577888888885 8999999999999999999999742 1222121 3457789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHH
Q 023266 119 EQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMN 162 (285)
Q Consensus 119 ~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~ 162 (285)
++|++|...+.+.++..+++|||+|.+|.|++|++|+++.+++.
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999887764
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=2.9e-16 Score=146.55 Aligned_cols=187 Identities=20% Similarity=0.197 Sum_probs=146.0
Q ss_pred EEEEecCCeEEEEeec---------CceeeEeCCcceEEcCccceeEEeeeeeeEEEEeeC-CcccccCCcEEEEEEEEE
Q 023266 6 CCVQVDQSTVAIKERF---------GKFEDVLEPGCHFLPWILGHQLAGHLTLRLQQLDVR-CETKTKDNVFVNVVASVQ 75 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~---------Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v~ 75 (285)
.||++-+...++|..+ |.-.+++.+|+||.+|++ +...+++++..++++. ..+.|+||+++.+++..+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~--q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIF--QTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecce--eeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 6666555555555544 444478999999999985 5678899998888888 589999999999999999
Q ss_pred EEEccc--hhhhhhcccC------ChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEE
Q 023266 76 YRALAH--KANDAFYKLS------NTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTL 147 (285)
Q Consensus 76 yrI~~~--~~~~~~~~~~------~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~ 147 (285)
.+|.|. +...+.-++. +....+...+.+.+|.+++++|+.+++++|..|...+.+.+...|++.|+.|+++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 999873 2222222221 34456888899999999999999999999999999999999999999999999999
Q ss_pred EeecCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 023266 148 IVDIEPD-------EHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAE 194 (285)
Q Consensus 148 I~~i~~p-------~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeae 194 (285)
|.|++.+ ..+.++...+..++-.+.+.+.++|+++...+..+++..+
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~ 244 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRD 244 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhH
Confidence 9999988 8899999888777766666666555555554444444433
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.68 E-value=1.4e-15 Score=117.16 Aligned_cols=105 Identities=37% Similarity=0.574 Sum_probs=96.5
Q ss_pred CcccccCCcEEEEEEEEEEEEccchhhhhhcccCChH--HHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHH
Q 023266 58 CETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTR--TQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKA 135 (285)
Q Consensus 58 ~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~--~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~ 135 (285)
..+.|+|++++.+++++.|+|.+|. .++++..... ..|.+.+.+++|+++++++++++.++|++|++.+++.+...
T Consensus 14 ~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~ 91 (121)
T cd02106 14 QEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQED 91 (121)
T ss_pred ceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHH
Confidence 5899999999999999999999964 4556555444 78999999999999999999999999999999999999999
Q ss_pred hhhcCeEEEEEEEeecCCCHHHHHHHHHH
Q 023266 136 MSAYGYEIVQTLIVDIEPDEHVKRAMNEI 164 (285)
Q Consensus 136 l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~ 164 (285)
+++||++|.+|.|.++.+|+++.++++++
T Consensus 92 ~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 92 LDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999999999999999999999999875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.53 E-value=1.1e-12 Score=111.23 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=123.9
Q ss_pred eEEEEecCCeEEEEeecCceeeEeCCcceEE----cCccc-------------eeEEeeeeeeEEE-EeeCC----cccc
Q 023266 5 FCCVQVDQSTVAIKERFGKFEDVLEPGCHFL----PWILG-------------HQLAGHLTLRLQQ-LDVRC----ETKT 62 (285)
Q Consensus 5 ~~~~~V~~ge~~Vv~~~Gk~~~~~~pG~h~~----~P~i~-------------~~~~~~v~~r~~~-~~~~~----~~~T 62 (285)
.|-.+|++||.+|.++-|++..+.+||.|-+ +|++. +..++.++++... ..+.. ....
T Consensus 14 GS~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D 93 (211)
T PF13421_consen 14 GSQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRD 93 (211)
T ss_pred CCEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecC
Confidence 3667999999999999999999999999974 33321 3667888888654 33321 2222
Q ss_pred cC--CcEEEEEEEEEEEEccchhhhhhccc---------CChHHHHHHHHHHHHHHHcc--CCcHHHHHhhHHHHHHHHH
Q 023266 63 KD--NVFVNVVASVQYRALAHKANDAFYKL---------SNTRTQIQAYVFDVIRASIP--KLNLDDAFEQKNEIAKAVE 129 (285)
Q Consensus 63 ~D--~~~v~v~~~v~yrI~~~~~~~~~~~~---------~~~~~~l~~~~~~~lr~vi~--~~~~~ei~~~R~~i~~~i~ 129 (285)
.+ .+.+..-++..|||.|| ..++.++ ++..+.+++.+.+.+.+.++ ++++.|+-++..+|++.++
T Consensus 94 ~~~~~v~lra~G~ys~rI~Dp--~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 94 PEYGPVRLRAFGTYSFRIVDP--VLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CCCCcEEEEEEEEEEEEEeCH--HHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 22 46788888899999996 3444332 24455777777777777776 5789999999999999999
Q ss_pred HHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHH
Q 023266 130 EELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEIN 165 (285)
Q Consensus 130 ~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~ 165 (285)
+.|++.+..+|++|.++.|.+|++|+++++.|+++.
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998754
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.07 E-value=5.6e-09 Score=89.47 Aligned_cols=159 Identities=13% Similarity=0.152 Sum_probs=122.5
Q ss_pred EEEEecCCeEEEEeecCceeeEe-CCcceE-------------------EcCccceeEEeeeeeeEEE-EeeC--Ccccc
Q 023266 6 CCVQVDQSTVAIKERFGKFEDVL-EPGCHF-------------------LPWILGHQLAGHLTLRLQQ-LDVR--CETKT 62 (285)
Q Consensus 6 ~~~~V~~ge~~Vv~~~Gk~~~~~-~pG~h~-------------------~~P~i~~~~~~~v~~r~~~-~~~~--~~~~T 62 (285)
|..+|.|++-++...-|++..+. ++|.+- ..|+ ++.|+.+++++.. +.+. ..+.-
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~--k~eVyfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPF--KQEVYFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcc--cceEEEEecceecceecCCCCCeec
Confidence 66789999999999999998776 477663 1333 4678899998877 5553 22222
Q ss_pred -----cCCcEEEEEEEEEEEEccchhh-------hhhcccCChHHHHHHHHHHHHHHHccCCc--HHHHHhhHHHHHHHH
Q 023266 63 -----KDNVFVNVVASVQYRALAHKAN-------DAFYKLSNTRTQIQAYVFDVIRASIPKLN--LDDAFEQKNEIAKAV 128 (285)
Q Consensus 63 -----~D~~~v~v~~~v~yrI~~~~~~-------~~~~~~~~~~~~l~~~~~~~lr~vi~~~~--~~ei~~~R~~i~~~i 128 (285)
.-++++....+..|+|.||... +-+|.+++.++.+-+.+-.++...|.++- +..+-++--+|++.+
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m 197 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYM 197 (345)
T ss_pred ccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHH
Confidence 2366788899999999997431 11234456777888888888888887764 344445888999999
Q ss_pred HHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHH
Q 023266 129 EEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINA 166 (285)
Q Consensus 129 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~ 166 (285)
.+.|.+.+..+|..|++|.|.+|++|++.+..|+.+..
T Consensus 198 ~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~s 235 (345)
T COG4260 198 AEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRNS 235 (345)
T ss_pred HHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhcc
Confidence 99999999999999999999999999999999997653
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.88 E-value=4.2e-07 Score=89.22 Aligned_cols=156 Identities=14% Similarity=0.143 Sum_probs=106.5
Q ss_pred EEEecCCeEEEEeec--CceeeEeCCcceEEcCccceeEEeeeeee----EE---EEe--eC-------CcccccCCcEE
Q 023266 7 CVQVDQSTVAIKERF--GKFEDVLEPGCHFLPWILGHQLAGHLTLR----LQ---QLD--VR-------CETKTKDNVFV 68 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~--Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r----~~---~~~--~~-------~~~~T~D~~~v 68 (285)
.|.||.+...=|+-+ ++-.-+.||-+.++-|- +.-.+..++.. .+ .+- +. +.+-|+|...+
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL 542 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL 542 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence 355666665555443 44444679999988876 22222222211 11 111 11 15789999999
Q ss_pred EEEEEEEEEEc----cchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHH-HHHHHHHHHHH--------H
Q 023266 69 NVVASVQYRAL----AHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNE-IAKAVEEELEK--------A 135 (285)
Q Consensus 69 ~v~~~v~yrI~----~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~-i~~~i~~~l~~--------~ 135 (285)
.+..+..|... ||......|++.||-..+-..+.+.+|..+++.++++++.+-.. |.+.+.....+ .
T Consensus 543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~ 622 (850)
T PTZ00491 543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLR 622 (850)
T ss_pred EEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceE
Confidence 99999999887 44445788999999999999999999999999999999975443 44455442222 2
Q ss_pred hhhcCeEEEEEEEeecCC-CHHHHHHHHH
Q 023266 136 MSAYGYEIVQTLIVDIEP-DEHVKRAMNE 163 (285)
Q Consensus 136 l~~~Gi~v~~v~I~~i~~-p~~v~~ai~~ 163 (285)
+...|+.|++|.|+++.| ++...+++++
T Consensus 623 F~~N~lvit~VDvqsvEpvD~~tr~~Lqk 651 (850)
T PTZ00491 623 FPANNLVITNVDVQSVEPVDERTRDSLQK 651 (850)
T ss_pred EccCCeEEEEEeeeeeeecCHHHHHHHHH
Confidence 355699999999999998 5555666653
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.68 E-value=0.00021 Score=61.95 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHH
Q 023266 166 AAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLR 215 (285)
Q Consensus 166 ~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~ 215 (285)
.|+-++++.+.+||+++++.+..|+|++++.+++|+|+|++.++.+++..
T Consensus 174 ~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~ 223 (242)
T cd03405 174 RAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG 223 (242)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34445556666677777777777777777777777777777776666553
No 30
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=97.45 E-value=0.0003 Score=60.29 Aligned_cols=48 Identities=29% Similarity=0.244 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHH
Q 023266 166 AAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDG 213 (285)
Q Consensus 166 ~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a 213 (285)
++|-++++++.+||++++..+...+|.+......|.|++++..+.|++
T Consensus 179 esEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a 226 (301)
T KOG2620|consen 179 ESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADA 226 (301)
T ss_pred hhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 455566667777777777666666666666666666666666555553
No 31
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=97.18 E-value=0.0016 Score=59.15 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHH
Q 023266 171 RVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVD 212 (285)
Q Consensus 171 ~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~ 212 (285)
+++...+++++++...+.|+|++++.+++|+|+|++.++.++
T Consensus 244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~ 285 (334)
T PRK11029 244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFAD 285 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 32
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.11 E-value=0.0096 Score=51.58 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=73.9
Q ss_pred eEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHH
Q 023266 50 RLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAV 128 (285)
Q Consensus 50 r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i 128 (285)
....++.|. ....+||+.+.+.+.+..|-+= ..+..-...+..+...-+..+..+=+.-+..+++.+-+.|++.+
T Consensus 123 nPkVI~~P~i~aVAkdGIql~~kArVTVRaNi----~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~V 198 (316)
T PF12127_consen 123 NPKVIDTPTIAAVAKDGIQLKVKARVTVRANI----DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTV 198 (316)
T ss_pred CCeeecCcchhhhhcCCeEEEEEEEEEEEecH----HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHH
Confidence 334445453 6678999999888888877752 33334344555666667777777777888999999999998877
Q ss_pred HHHHHHHhh-hcCeEEEEEEEeecCCCHHHHHH
Q 023266 129 EEELEKAMS-AYGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 129 ~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.+. -|+ ..-++|.|+.|-|++..+++=..
T Consensus 199 L~k---gLDagTAFeIlSIDIaDidVG~NIGA~ 228 (316)
T PF12127_consen 199 LEK---GLDAGTAFEILSIDIADIDVGENIGAK 228 (316)
T ss_pred Hhh---CCCcCceeEEEEeeeeccccchhhchh
Confidence 653 343 33699999999999988765433
No 33
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=97.10 E-value=0.0019 Score=58.47 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHH-hhhcCeEEEEEEEeecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023266 122 NEIAKAVEEELEKA-MSAYGYEIVQTLIVDIEPDEHVKRAMNE-------INAAARLRVAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 122 ~~i~~~i~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~v~~ai~~-------~~~Ae~~~~a~~~~Aeae~~~~i~~A~aea 193 (285)
.++.+.+.+.+... +.=-.+.|.++.+.+ .+-+.+.+.+.+ +..++-+++++...+++++++..+.|+|++
T Consensus 178 ~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~-~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 178 REISQIANSQLKDIGIEVVDVRIKKINYSD-ELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666552 233367777777653 333444333332 333444555666667777777788888888
Q ss_pred HHHHHcchhhHHHHHHHHHHH---------HHHHHHHhhcCCC
Q 023266 194 ESKYLSGLGIARQRQAIVDGL---------RDSVLGFSINVPG 227 (285)
Q Consensus 194 ea~~~~Aea~a~a~~~~a~a~---------~~~~~~~~~a~~~ 227 (285)
++.+++|+|+|++.++.+++. ...++.+.+.+++
T Consensus 257 ~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~~~ 299 (317)
T TIGR01932 257 TARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSFKD 299 (317)
T ss_pred HHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCC
Confidence 888889998888888887654 3556666666653
No 34
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.93 E-value=0.0045 Score=54.35 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHH---hhhcCeEEEEEEEeecCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023266 124 IAKAVEEELEKA---MSAYGYEIVQTLIVDIEPDEHVKRAMNEI-------NAAARLRVAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 124 i~~~i~~~l~~~---l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~-------~~Ae~~~~a~~~~Aeae~~~~i~~A~aea 193 (285)
+.+.+.+.+... +.=..+.|.++.+.+ ..-+.+.+.+.++ .+|+.+++..+.+|++++++.+.+|+|++
T Consensus 120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555442 344567888887654 3333343333332 23444555566678889999999999999
Q ss_pred HHHHHcchhhHHHHHHHHHHHHH
Q 023266 194 ESKYLSGLGIARQRQAIVDGLRD 216 (285)
Q Consensus 194 ea~~~~Aea~a~a~~~~a~a~~~ 216 (285)
++.+++|+|+|++..+.+++..+
T Consensus 199 ~~~~~~a~g~a~~~~~~~~ay~~ 221 (261)
T TIGR01933 199 ERRINRAKGDVARFTKLLAEYKK 221 (261)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999998887776543
No 35
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=96.93 E-value=0.0048 Score=57.73 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHH---hhhcCeEEEEEEEeecCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023266 124 IAKAVEEELEKA---MSAYGYEIVQTLIVDIEPDEHVKRAMNEI-------NAAARLRVAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 124 i~~~i~~~l~~~---l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~-------~~Ae~~~~a~~~~Aeae~~~~i~~A~aea 193 (285)
+.+.+.+.+... +.=..|.|.++..-.=. -+.+.+.+.++ .+|+..++..+.+|++++.+.+.+|+|.+
T Consensus 216 i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV-~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr 294 (419)
T PRK10930 216 TQRELEETIRPYDMGITLLDVNFQAARPPEEV-KAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYK 294 (419)
T ss_pred HHHHHHHHHhhcCCCeEEEEEEEeecCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444442 33345666666654311 12333333322 34555556667788888888888899999
Q ss_pred HHHHHcchhhHHHH
Q 023266 194 ESKYLSGLGIARQR 207 (285)
Q Consensus 194 ea~~~~Aea~a~a~ 207 (285)
++.+++|+|+|++-
T Consensus 295 ~~~i~~AeGda~rF 308 (419)
T PRK10930 295 AQTILEAQGEVARF 308 (419)
T ss_pred HHHHHHhhhhHHHH
Confidence 99999999998663
No 36
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.78 E-value=0.0062 Score=53.59 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=50.0
Q ss_pred EEEEeecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhh
Q 023266 145 QTLIVDIEPD-EHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSI 223 (285)
Q Consensus 145 ~v~I~~i~~p-~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~ 223 (285)
.+.|.++.+- -..-..+.+.+.+. ..|+.++++.+.+|++++++.+.+|+|+|++..+.|+|.+++....++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~~-------~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDDV-------NKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 6888888874 23345555444332 234445556667788888888888899888888888888877766665
Q ss_pred c
Q 023266 224 N 224 (285)
Q Consensus 224 a 224 (285)
+
T Consensus 234 ~ 234 (266)
T cd03404 234 G 234 (266)
T ss_pred H
Confidence 3
No 37
>PRK13665 hypothetical protein; Provisional
Probab=96.27 E-value=0.025 Score=48.82 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=67.9
Q ss_pred eeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHH
Q 023266 48 TLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAK 126 (285)
Q Consensus 48 ~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~ 126 (285)
+.....++.|. ....+||+.+.+.+.+..|-.= ..+..-..-+..+...-+..+..+=+.-+..+++++-+.|++
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaNi----~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk 201 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRANI----DRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK 201 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeehhH----HHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence 33344455553 6678999999888877777432 112221122223344445555666667788889999999986
Q ss_pred HHHHHHHHHhhh-cCeEEEEEEEeecCCCHHHHHH
Q 023266 127 AVEEELEKAMSA-YGYEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 127 ~i~~~l~~~l~~-~Gi~v~~v~I~~i~~p~~v~~a 160 (285)
.+. .+-|+. .-++|.|+.|-|++..+++=..
T Consensus 202 ~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA~ 233 (316)
T PRK13665 202 TVL---SKGLDAGTAFEILSIDIADVDVGKNIGAK 233 (316)
T ss_pred HHH---hccCCcCceeEEEEEeeeccccchhhchh
Confidence 554 344543 3699999999999998776433
No 38
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.27 E-value=0.016 Score=51.00 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHH
Q 023266 173 AANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAI 210 (285)
Q Consensus 173 a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~ 210 (285)
+.+.+|++++++.+++|+|+|++.++.|+|++++....
T Consensus 172 ~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~ 209 (262)
T cd03407 172 KDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSL 209 (262)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444433
No 39
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.00 E-value=0.052 Score=41.08 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=68.5
Q ss_pred cccccCCcEEEEEEEEEEEEcc----chhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHH-HHHHHH---
Q 023266 59 ETKTKDNVFVNVVASVQYRALA----HKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEI-AKAVEE--- 130 (285)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~~----~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i-~~~i~~--- 130 (285)
.+-|+|-..+.+..+..|...- +......+++.|+-.-+-..+.+.+|..+++.+.++++.+-..| .+.+..
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 5678999999998888887643 22347789999999999999999999999999999999754433 222211
Q ss_pred --HHHH--HhhhcCeEEEEEEEeecCC
Q 023266 131 --ELEK--AMSAYGYEIVQTLIVDIEP 153 (285)
Q Consensus 131 --~l~~--~l~~~Gi~v~~v~I~~i~~ 153 (285)
.++. .+...|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 1111 2345699999999999876
No 40
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=95.36 E-value=0.2 Score=40.58 Aligned_cols=80 Identities=8% Similarity=0.046 Sum_probs=63.8
Q ss_pred CcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcCeE
Q 023266 65 NVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYE 142 (285)
Q Consensus 65 ~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~ 142 (285)
+...-+.+.+.|++.|.... -.+.. =.+.+++.+...+++.+.+++.+ +++.+..++++.|+..+..-+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~---~el~~----~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALL---EELEE----KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHH---HHHHH----hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 56677788899999884221 11111 34778999999999999999987 899999999999999998766 8
Q ss_pred EEEEEEeecC
Q 023266 143 IVQTLIVDIE 152 (285)
Q Consensus 143 v~~v~I~~i~ 152 (285)
|.+|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8999988764
No 41
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.24 Score=44.05 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhc
Q 023266 172 VAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSIN 224 (285)
Q Consensus 172 ~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a 224 (285)
......||.++.+.+.+|++++++.+++|+|++++..+.++|.+++ +...++
T Consensus 179 ~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 179 MEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 3445567777888999999999999999999999999999999888 444544
No 42
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.93 E-value=0.86 Score=43.88 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=33.7
Q ss_pred cchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHh
Q 023266 190 EGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIG 250 (285)
Q Consensus 190 ~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~ 250 (285)
+++++++..++.++|++.+..+.|++++.+++++++...+.... ..+....+++|+.++
T Consensus 412 ~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~ 470 (548)
T COG2268 412 KAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVA 470 (548)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHH
Confidence 34555556666666666677777777777777777764433311 122235566666554
No 43
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=92.50 E-value=3.1 Score=30.32 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeec
Q 023266 97 IQAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (285)
Q Consensus 97 l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
-.+.+++.+...+++++.+++.+ +++.+.+++++.+++.+.+- .|.+|.++++
T Consensus 42 ~~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 42 NMPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred ccHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 34678999999999999999985 89999999999999998433 3788887765
No 44
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.20 E-value=1.6 Score=34.68 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeec
Q 023266 98 QAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
.+.+++.+-..+++.+.+|+-+ +++.+.+++++.++..+.+ | .|.+|.++++
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 3478888999999999999976 8999999999999998875 4 6888888775
No 45
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=90.35 E-value=2.4 Score=33.39 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=45.6
Q ss_pred HHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhc-C-eEEEEEEEeec
Q 023266 99 AYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 151 (285)
Q Consensus 99 ~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 151 (285)
+.+++.+-.++++.+.+++.+ +|+.+.+++++.++..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 778999999999999999976 89999999999999999753 3 35888888875
No 46
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=89.34 E-value=0.89 Score=37.77 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=18.2
Q ss_pred HHHHHHcchhhHHHHHHHHHHHHHH
Q 023266 193 AESKYLSGLGIARQRQAIVDGLRDS 217 (285)
Q Consensus 193 aea~~~~Aea~a~a~~~~a~a~~~~ 217 (285)
++..+.+|+++|++..+.|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4445677888888888888887764
No 47
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=87.81 E-value=4.9 Score=33.74 Aligned_cols=48 Identities=23% Similarity=0.075 Sum_probs=21.9
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHH
Q 023266 158 KRAMNEINA--AARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIAR 205 (285)
Q Consensus 158 ~~ai~~~~~--Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~ 205 (285)
.+.|..... |+++...-+.+|+.++...+..|+.+++....+|+.+++
T Consensus 9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 333434444445555555555555555544444444433
No 48
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=85.60 E-value=1.1 Score=37.88 Aligned_cols=53 Identities=28% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHH
Q 023266 153 PDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 206 (285)
Q Consensus 153 ~p~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a 206 (285)
|.+.+...--+++.||+-+= -.++||.+|++.++.|||+++++.+.+.+-|.+
T Consensus 179 Ft~AvE~KQVAQQEAErarF-vVeKAeQqk~aavIsAEGds~aA~li~~sla~a 231 (271)
T KOG3083|consen 179 FTEAVEAKQVAQQEAERARF-VVEKAEQQKKAAVISAEGDSKAAELIANSLATA 231 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhheeecccchHHHHHHHHHHhhc
Confidence 44455555556677777653 566788888899999999999999888877654
No 49
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=85.53 E-value=4.3 Score=34.09 Aligned_cols=6 Identities=0% Similarity=0.218 Sum_probs=3.1
Q ss_pred cEEEEc
Q 023266 256 SAVFIP 261 (285)
Q Consensus 256 ~~i~lp 261 (285)
-.|++|
T Consensus 121 ~~I~~~ 126 (198)
T PRK01558 121 LEIILN 126 (198)
T ss_pred eeEEEC
Confidence 345555
No 50
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=85.44 E-value=5.5 Score=32.85 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=59.3
Q ss_pred cccccCC--cEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHh
Q 023266 59 ETKTKDN--VFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAM 136 (285)
Q Consensus 59 ~~~T~D~--~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l 136 (285)
.+.++|. ..+.+.+++.|...++++.. ++ ..-.+.+++.+...+++++.+|+. +++.+.+++++++++.|
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~---EL----~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILN---EL----GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHH---HH----HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 4555665 33446777777776643211 11 123467888999999999999998 99999999999999988
Q ss_pred hhcCeEEEEEEEeecC
Q 023266 137 SAYGYEIVQTLIVDIE 152 (285)
Q Consensus 137 ~~~Gi~v~~v~I~~i~ 152 (285)
.+- .|.+|.++++.
T Consensus 164 ~~G--kV~~VYFTeFv 177 (181)
T PRK06654 164 RNG--EIKDIAFTQID 177 (181)
T ss_pred CCC--ceEEEEEEEEE
Confidence 753 36777777654
No 51
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=84.97 E-value=1.4 Score=37.15 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=9.0
Q ss_pred hcchHHHHHHcchhhHHHHHH
Q 023266 189 AEGEAESKYLSGLGIARQRQA 209 (285)
Q Consensus 189 A~aeaea~~~~Aea~a~a~~~ 209 (285)
|+.++++.+.+|+|++++..+
T Consensus 156 A~~~~~a~i~~A~ge~~a~~~ 176 (215)
T cd03403 156 AEREKRAKIIEAEGERQAAIL 176 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444333
No 52
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=84.96 E-value=7.2 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHc
Q 023266 160 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLS 199 (285)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~ 199 (285)
.|..-+.||+++..-+..|..++..++..|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788999888888888888888888888888776653
No 53
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=84.79 E-value=7.5 Score=32.13 Aligned_cols=46 Identities=22% Similarity=0.053 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHH
Q 023266 161 MNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 206 (285)
Q Consensus 161 i~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a 206 (285)
+-.+...+-++++....++++++...+.++|++++..+..++.+++
T Consensus 6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a 51 (188)
T PRK02292 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555566666666666666666666555554443
No 54
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.35 E-value=3 Score=34.55 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeec
Q 023266 97 IQAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (285)
Q Consensus 97 l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
-.+.+++.+-.++++.+.+|+.+ .++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 125 ~~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 125 KDPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 45678999999999999999986 7999999999999999976 3 5788888775
No 55
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.07 E-value=4.2 Score=32.97 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcC--eEEEEEEEeec
Q 023266 98 QAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYG--YEIVQTLIVDI 151 (285)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~v~~v~I~~i 151 (285)
.+.+++.+-..+++.+.+|+.+ +++.+.+++++.+++.+..-+ -.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3568888888899999999976 899999999999999986542 45888888775
No 56
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.97 E-value=3.5 Score=33.62 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhcCeEEEEEEEeec
Q 023266 97 IQAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (285)
Q Consensus 97 l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 151 (285)
-.+.+++.+-..+++.+.+|+.+ +++.+.+++.+.++..+.+- .|.+|.++++
T Consensus 109 ~~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 109 LMPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred hchHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 34678888888899999999976 79999999999999988753 3888888875
No 57
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.54 E-value=13 Score=31.65 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=54.5
Q ss_pred ccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhh-hcC
Q 023266 62 TKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMS-AYG 140 (285)
Q Consensus 62 T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~-~~G 140 (285)
.-||+.+...+.+..|-. ...+..-..-+..+...-...+..+-++..-.+++.+-+.|++.+.+ +-|+ ...
T Consensus 140 am~gievkakaritvran----i~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gta 212 (328)
T COG4864 140 AMNGIEVKAKARITVRAN----IERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGTA 212 (328)
T ss_pred eccceEEEEEEEEEehhh----HHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCce
Confidence 356766655554444332 11222222333344444455555555666778888888888776644 2332 235
Q ss_pred eEEEEEEEeecCCCHHHHHH
Q 023266 141 YEIVQTLIVDIEPDEHVKRA 160 (285)
Q Consensus 141 i~v~~v~I~~i~~p~~v~~a 160 (285)
++|.++.|-|++..+++-..
T Consensus 213 feilsidiadvdigkniga~ 232 (328)
T COG4864 213 FEILSIDIADVDIGKNIGAK 232 (328)
T ss_pred eEEEEeeeeccccccccccc
Confidence 89999999999988776433
No 58
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=81.84 E-value=12 Score=30.02 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q 023266 236 MVLVTQYFDTMK 247 (285)
Q Consensus 236 ~~l~~~~le~l~ 247 (285)
..+..+|++..+
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 455678877654
No 59
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=81.60 E-value=4.9 Score=32.84 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHh--hHHHHHHHHHHHHHHHhhhc-C-eEEEEEEEeec
Q 023266 96 QIQAYVFDVIRASIPKLNLDDAFE--QKNEIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 151 (285)
Q Consensus 96 ~l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 151 (285)
.-.+.+++.+-.++++.+.+++.+ +++.+.+++.++++..+... | -.|.+|.++++
T Consensus 108 ~~~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 108 KHIPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HhhHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 345678899999999999999976 79999999999999888654 3 25888888875
No 60
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=81.27 E-value=32 Score=29.09 Aligned_cols=34 Identities=24% Similarity=0.033 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhh
Q 023266 170 LRVAANEKAEAEKILQIKRAEGEAESKYLSGLGI 203 (285)
Q Consensus 170 ~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~ 203 (285)
+++..+..|+.++...+..|+.+++..+..|+.+
T Consensus 28 eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~e 61 (207)
T PRK01005 28 EAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEET 61 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433333
No 61
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=80.42 E-value=14 Score=30.56 Aligned_cols=10 Identities=10% Similarity=-0.051 Sum_probs=5.0
Q ss_pred HHHHHHHHHh
Q 023266 241 QYFDTMKEIG 250 (285)
Q Consensus 241 ~~le~l~~~~ 250 (285)
.|.+.|.++.
T Consensus 100 ~y~~~l~~li 109 (188)
T PRK02292 100 KREELTKSLL 109 (188)
T ss_pred hHHHHHHHHH
Confidence 4555555554
No 62
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=77.66 E-value=13 Score=33.85 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=7.7
Q ss_pred HHHHHHHHhhcCCC
Q 023266 214 LRDSVLGFSINVPG 227 (285)
Q Consensus 214 ~~~~~~~~~~a~~~ 227 (285)
++.-++.+.++++.
T Consensus 350 ~aa~l~~lLealp~ 363 (428)
T KOG2668|consen 350 QAAYLRTLLEALPM 363 (428)
T ss_pred hhHHHHHHHHHHHH
Confidence 34445666666653
No 63
>PLN03086 PRLI-interacting factor K; Provisional
Probab=77.52 E-value=3.6 Score=40.07 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHhhcCCCcEEEEcC
Q 023266 244 DTMKEIGAASKSSAVFIPH 262 (285)
Q Consensus 244 e~l~~~~~~~~~~~i~lp~ 262 (285)
..|+.+...+++..|+||.
T Consensus 80 ~~~~~~~~~~~GdKI~LPp 98 (567)
T PLN03086 80 RIFEAVSFQGNGDKIKLPP 98 (567)
T ss_pred EEeeccccCCCCCeEEcCH
Confidence 3334443346788899995
No 64
>PTZ00491 major vault protein; Provisional
Probab=74.71 E-value=69 Score=32.87 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=11.9
Q ss_pred HhhcchHHHHHHcchhhHHHH
Q 023266 187 KRAEGEAESKYLSGLGIARQR 207 (285)
Q Consensus 187 ~~A~aeaea~~~~Aea~a~a~ 207 (285)
.+|+++|+|.++++||+-++.
T Consensus 719 a~a~a~aea~~ie~e~~v~~a 739 (850)
T PTZ00491 719 AEALAEAEARLIEAEAEVEQA 739 (850)
T ss_pred HHHHHHHHHHhhhhhhHHHHH
Confidence 355566666666666653333
No 65
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=73.41 E-value=26 Score=29.62 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchh
Q 023266 167 AARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLG 202 (285)
Q Consensus 167 Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea 202 (285)
|+.+++.-+.+|+.++...+..|+.+++..+.+++.
T Consensus 36 Ak~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 36 AKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555556656666666665555554444
No 66
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=72.54 E-value=36 Score=28.70 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=47.0
Q ss_pred CcccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhh--HHHHHHHHHHHHHH
Q 023266 58 CETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQ--KNEIAKAVEEELEK 134 (285)
Q Consensus 58 ~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~--R~~i~~~i~~~l~~ 134 (285)
.++.|+||..+.+-+.+.-.-. --..-...|+..+.+.+.+.++++++++++.. -+.|..+|....+.
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~ 169 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKK 169 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhh
Confidence 4678999999887665443221 11234567999999999999999999999863 34455555555443
No 67
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=68.05 E-value=9.9 Score=28.22 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcch
Q 023266 160 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGL 201 (285)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Ae 201 (285)
.|..-+.|+.++...+.+|..++...+..|+.+|+..+....
T Consensus 5 ~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r 46 (105)
T PF03179_consen 5 GIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFR 46 (105)
T ss_dssp -SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788887777777877777777777777766554333
No 68
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=66.52 E-value=51 Score=24.49 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 023266 159 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAE 194 (285)
Q Consensus 159 ~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeae 194 (285)
+.|.....|+.+.+.....|..++...+..|+.+++
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~ 38 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAK 38 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666555555555555544444443
No 69
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=66.38 E-value=17 Score=32.24 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHccCCcHHHHHh--hHHHHH----HHHHHHHHHHhhhcCeEE--EEEEEeecCCC-HHHHHHHHHHHHH
Q 023266 97 IQAYVFDVIRASIPKLNLDDAFE--QKNEIA----KAVEEELEKAMSAYGYEI--VQTLIVDIEPD-EHVKRAMNEINAA 167 (285)
Q Consensus 97 l~~~~~~~lr~vi~~~~~~ei~~--~R~~i~----~~i~~~l~~~l~~~Gi~v--~~v~I~~i~~p-~~v~~ai~~~~~A 167 (285)
....+.+.+|+. +.++++ .-+++- ..+...+.+.+.+- +.- ..+.|.++.+- .+.=+.+.+.+
T Consensus 94 ~~~~I~~~Vrsa-----vr~vig~~tldeVis~~Rd~I~~~I~~~l~e~-l~~y~~GI~I~dV~I~~id~P~~V~~af-- 165 (280)
T cd03406 94 DKTLIFNKIHHE-----LNQFCSVHTLQEVYIDLFDQIDENLKLALQKD-LTRMAPGLEIQAVRVTKPKIPEAIRRNY-- 165 (280)
T ss_pred HHHHHHHHHHHH-----HHHHhhhCCHHHHHhccHHHHHHHHHHHHHHH-HhccCCCcEEEEEEEEecCCCHHHHHHH--
Confidence 344455555554 344443 233332 34555555555443 221 27888888873 34445555433
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHhhcchHHHHHHcchhhHHHHHHHH
Q 023266 168 ARLRVAANEKAEAEKI--------LQIKRAEGEAESKYLSGLGIARQRQAIV 211 (285)
Q Consensus 168 e~~~~a~~~~Aeae~~--------~~i~~A~aeaea~~~~Aea~a~a~~~~a 211 (285)
+ +.+||-++. +...+|||++.+..++|||+|+-.++..
T Consensus 166 e------rM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~ 211 (280)
T cd03406 166 E------LMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILF 211 (280)
T ss_pred H------HHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHH
Confidence 2 223333333 7788899999999999999887655443
No 70
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=60.47 E-value=71 Score=24.05 Aligned_cols=35 Identities=31% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023266 159 RAMNEINAAARLRVAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 159 ~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aea 193 (285)
+.+.....|+......+.+|.-++...+..|+.++
T Consensus 7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ea 41 (108)
T COG2811 7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEA 41 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444333
No 71
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=59.53 E-value=58 Score=26.00 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=2.8
Q ss_pred HHHHhhH
Q 023266 115 DDAFEQK 121 (285)
Q Consensus 115 ~ei~~~R 121 (285)
..++..|
T Consensus 48 ~~~l~~R 54 (156)
T CHL00118 48 LKVLDER 54 (156)
T ss_pred HHHHHHH
Confidence 3344433
No 72
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=59.09 E-value=58 Score=26.39 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHcchhhHH
Q 023266 175 NEKAEAEKILQIKRAEGEAESKYLSGLGIAR 205 (285)
Q Consensus 175 ~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~ 205 (285)
..+|+..+...+..|+.+++..+.+|+.+.+
T Consensus 98 ~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie 128 (167)
T PRK08475 98 KKEAYILTQKIEKQTKDDIENLIKSFEELME 128 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555444444433
No 73
>PRK09098 type III secretion system protein HrpB; Validated
Probab=58.74 E-value=46 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHcc
Q 023266 174 ANEKAEAEKILQIKRAEGEAESKYLSG 200 (285)
Q Consensus 174 ~~~~Aeae~~~~i~~A~aeaea~~~~A 200 (285)
...+|..+++..+..|+.+|++.+..|
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A 70 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAA 70 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 74
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.60 E-value=18 Score=30.91 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEEeecCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcchhhH
Q 023266 126 KAVEEELEKAMSAYGYEIVQTLIVDIEPDEH-VKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSGLGIA 204 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~-v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a 204 (285)
+.+...+++.|...--.. ++.+.|+++..- .-..+....+|.|-+.. +||- +.-.+.+|+-+.+..+++|||||
T Consensus 155 e~VSrliRk~L~eRA~~F-ni~LDDVSiT~l~F~~efTaAiEaKQvA~Q---eAqR-A~F~VekA~qek~~~ivrAqGEa 229 (290)
T KOG3090|consen 155 EQVSRLIRKILTERAADF-NIALDDVSITELTFGKEFTAAIEAKQVAAQ---EAQR-AKFIVEKAEQEKQSAIVRAQGEA 229 (290)
T ss_pred HHHHHHHHHHHHHHHhcc-ceEeecceeeeeecCHHHHHHHHHHHHHHH---HHhh-hhhhhHHHHHhhhhhhhhhccch
Confidence 344455555555443332 455666666532 33444455555443322 2221 22346678889999999999988
Q ss_pred HHHH
Q 023266 205 RQRQ 208 (285)
Q Consensus 205 ~a~~ 208 (285)
++.+
T Consensus 230 ksAq 233 (290)
T KOG3090|consen 230 KSAQ 233 (290)
T ss_pred HHHH
Confidence 7643
No 75
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=57.57 E-value=72 Score=24.23 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHH
Q 023266 173 AANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQ 208 (285)
Q Consensus 173 a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~ 208 (285)
.....||.++...+..|+..+...+..|..+|+...
T Consensus 9 Q~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI 44 (113)
T TIGR01147 9 QQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEV 44 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777666666666666665433
No 76
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.43 E-value=73 Score=26.86 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=8.3
Q ss_pred cHHHHHhhHHH-HHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVE 129 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~ 129 (285)
++..++.+|.+ |...+.
T Consensus 77 pI~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45556665543 444443
No 77
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=54.96 E-value=69 Score=26.96 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=4.5
Q ss_pred cHHHHHhhHH
Q 023266 113 NLDDAFEQKN 122 (285)
Q Consensus 113 ~~~ei~~~R~ 122 (285)
++..++.+|.
T Consensus 72 Pi~~~L~~R~ 81 (205)
T PRK06231 72 PTQRFLNKRK 81 (205)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 78
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=53.98 E-value=80 Score=25.17 Aligned_cols=10 Identities=0% Similarity=0.375 Sum_probs=5.4
Q ss_pred cHHHHHhhHH
Q 023266 113 NLDDAFEQKN 122 (285)
Q Consensus 113 ~~~ei~~~R~ 122 (285)
++..++..|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 4555665544
No 79
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=53.71 E-value=67 Score=26.87 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=49.4
Q ss_pred cccccCCcEEEEEEEEEEEEccchhhhhhcccC-ChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhh
Q 023266 59 ETKTKDNVFVNVVASVQYRALAHKANDAFYKLS-NTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMS 137 (285)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~-~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 137 (285)
++.|+||..+.+-+...=+=. .. .-...|+..+.+.+.+.++..++++++..- +...+..++...+.
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r----------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~~k 174 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR----------AKSSQIKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKACK 174 (194)
T ss_dssp EEEETTTEEEEEEEEEEE--------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHHHC
T ss_pred EEEcCCCcEEEEEEEEEEeec----------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHHhc
Confidence 678999988876544322111 22 234579999999999999999999998632 33344444444444
Q ss_pred hcCeEEEEEEEeecC
Q 023266 138 AYGYEIVQTLIVDIE 152 (285)
Q Consensus 138 ~~Gi~v~~v~I~~i~ 152 (285)
.. +-+.+|.|..+.
T Consensus 175 ~I-yPl~~v~IrKvK 188 (194)
T PF01015_consen 175 KI-YPLRNVEIRKVK 188 (194)
T ss_dssp TT---EEEEEEEEEE
T ss_pred cc-cccceEEEEEEE
Confidence 43 334466555443
No 80
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=53.11 E-value=1.5e+02 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhcchHHHHHHcchhhH
Q 023266 177 KAEAEKILQIKRAEGEAESKYLSGLGIA 204 (285)
Q Consensus 177 ~Aeae~~~~i~~A~aeaea~~~~Aea~a 204 (285)
+|+.++...+..|+.++++.+..|+.+.
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQEAL 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444444443
No 81
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=52.75 E-value=92 Score=24.42 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=7.6
Q ss_pred cHHHHHhhHHH-HHHHH
Q 023266 113 NLDDAFEQKNE-IAKAV 128 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i 128 (285)
++..++.+|.+ |...+
T Consensus 31 Pi~~~l~~R~~~I~~~l 47 (141)
T PRK08476 31 PLLKFMDNRNASIKNDL 47 (141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555544 44443
No 82
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.26 E-value=86 Score=25.49 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=8.3
Q ss_pred CcHHHHHhhHHH-HHHHH
Q 023266 112 LNLDDAFEQKNE-IAKAV 128 (285)
Q Consensus 112 ~~~~ei~~~R~~-i~~~i 128 (285)
-++.+++..|.+ |.+.+
T Consensus 41 ~pi~~~l~~R~~~I~~~l 58 (173)
T PRK13453 41 GPLKDVMDKRERDINRDI 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566665543 43333
No 83
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=52.20 E-value=1.4e+02 Score=24.95 Aligned_cols=10 Identities=0% Similarity=0.355 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023266 240 TQYFDTMKEI 249 (285)
Q Consensus 240 ~~~le~l~~~ 249 (285)
..-.+.+.+.
T Consensus 108 ~ll~~~~~~~ 117 (194)
T COG1390 108 ELLIEALEKL 117 (194)
T ss_pred HHHHHHHHhc
Confidence 3344444444
No 84
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=51.34 E-value=96 Score=25.49 Aligned_cols=11 Identities=0% Similarity=0.283 Sum_probs=6.1
Q ss_pred cHHHHHhhHHH
Q 023266 113 NLDDAFEQKNE 123 (285)
Q Consensus 113 ~~~ei~~~R~~ 123 (285)
++..++.+|.+
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45556665543
No 85
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=51.09 E-value=1.2e+02 Score=24.96 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 023266 241 QYFDTMKEI 249 (285)
Q Consensus 241 ~~le~l~~~ 249 (285)
.|.+.|.++
T Consensus 101 ~Y~~~L~~L 109 (185)
T PRK01194 101 EYDSILNKM 109 (185)
T ss_pred hHHHHHHHH
Confidence 344444444
No 86
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=50.71 E-value=93 Score=25.28 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.0
Q ss_pred cHHHHHhhHH
Q 023266 113 NLDDAFEQKN 122 (285)
Q Consensus 113 ~~~ei~~~R~ 122 (285)
++..++.+|.
T Consensus 42 pi~~~l~~R~ 51 (175)
T PRK14472 42 PILSALEERE 51 (175)
T ss_pred HHHHHHHHHH
Confidence 3455555444
No 87
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=50.46 E-value=97 Score=24.82 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=8.0
Q ss_pred cHHHHHhhHHH-HHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVE 129 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~ 129 (285)
++..++..|.+ |...+.
T Consensus 32 pi~~~l~~R~~~I~~~l~ 49 (164)
T PRK14473 32 PVLNLLNERTRRIEESLR 49 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 44555655543 444433
No 88
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.44 E-value=1.3e+02 Score=23.89 Aligned_cols=7 Identities=14% Similarity=0.529 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 023266 157 VKRAMNE 163 (285)
Q Consensus 157 v~~ai~~ 163 (285)
+.+.|++
T Consensus 47 i~~~l~~ 53 (156)
T CHL00118 47 LLKVLDE 53 (156)
T ss_pred HHHHHHH
Confidence 4444443
No 89
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.15 E-value=1e+02 Score=24.99 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=7.8
Q ss_pred cHHHHHhhHHH-HHHHH
Q 023266 113 NLDDAFEQKNE-IAKAV 128 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i 128 (285)
++..++.+|.+ |...+
T Consensus 40 pi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 40 VILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556665543 44333
No 90
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=48.11 E-value=2e+02 Score=28.92 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHH-HhhhcCeEEEEEE----EeecCCCHHHHHHHHHHHHHHHH
Q 023266 129 EEELEK-AMSAYGYEIVQTL----IVDIEPDEHVKRAMNEINAAARL 170 (285)
Q Consensus 129 ~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~v~~ai~~~~~Ae~~ 170 (285)
-+.|+. .|...||.|++-. +-....|+++.+..+++...+++
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQ 566 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence 456666 5888899999852 11233355566655555443333
No 91
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=47.36 E-value=1.2e+02 Score=24.54 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=7.2
Q ss_pred HHHHHhhHH-HHHHHHH
Q 023266 114 LDDAFEQKN-EIAKAVE 129 (285)
Q Consensus 114 ~~ei~~~R~-~i~~~i~ 129 (285)
+..++..|. .|...+.
T Consensus 35 i~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 35 LAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 445555443 3444443
No 92
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.32 E-value=1.9e+02 Score=25.00 Aligned_cols=14 Identities=7% Similarity=0.354 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 023266 236 MVLVTQYFDTMKEI 249 (285)
Q Consensus 236 ~~l~~~~le~l~~~ 249 (285)
..+-.+|++-+.++
T Consensus 147 ~~lid~~i~~l~~l 160 (246)
T TIGR03321 147 ERMVDVFVQRLRTL 160 (246)
T ss_pred HHHHHHHHHHhhcC
Confidence 34556777666555
No 93
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.71 E-value=1.7e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=11.4
Q ss_pred CcHHHHHhhHHH-HHHHHHHH
Q 023266 112 LNLDDAFEQKNE-IAKAVEEE 131 (285)
Q Consensus 112 ~~~~ei~~~R~~-i~~~i~~~ 131 (285)
.++..++.+|.+ |...+.+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 567777775553 55544443
No 94
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=45.36 E-value=1.3e+02 Score=23.65 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHHHhhHH
Q 023266 114 LDDAFEQKN 122 (285)
Q Consensus 114 ~~ei~~~R~ 122 (285)
+..++.+|.
T Consensus 29 i~~~l~~R~ 37 (156)
T PRK05759 29 IMKALEERQ 37 (156)
T ss_pred HHHHHHHHH
Confidence 334444433
No 95
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=45.13 E-value=2.1e+02 Score=24.90 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 023266 236 MVLVTQYFDTMKEI 249 (285)
Q Consensus 236 ~~l~~~~le~l~~~ 249 (285)
..+-.++++.|.++
T Consensus 147 ~~lid~~i~~l~~l 160 (250)
T PRK14474 147 QQIVGIFIARLEHL 160 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 34556677666555
No 96
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=44.26 E-value=1.8e+02 Score=23.95 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.3
Q ss_pred EEEcCCCCch
Q 023266 258 VFIPHGPGAV 267 (285)
Q Consensus 258 i~lp~~~~~~ 267 (285)
+++-..+.+.
T Consensus 122 i~i~~~~~D~ 131 (198)
T PRK03963 122 VVVRSNERTL 131 (198)
T ss_pred EEEEEccccH
Confidence 4443344444
No 97
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.64 E-value=1.5e+02 Score=22.86 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.4
Q ss_pred HHHHHhhH
Q 023266 114 LDDAFEQK 121 (285)
Q Consensus 114 ~~ei~~~R 121 (285)
+..++.+|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 34444433
No 98
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=43.09 E-value=1.9e+02 Score=23.96 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHH
Q 023266 175 NEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 175 ~~~Aeae~~~~i~~A~aeaea~~~ 198 (285)
...|+.++...+..|+.++++.+.
T Consensus 36 L~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 36 LEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 99
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.95 E-value=2.9e+02 Score=26.32 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHh
Q 023266 236 MVLVTQYFDTMKEIG 250 (285)
Q Consensus 236 ~~l~~~~le~l~~~~ 250 (285)
..+-.+|++-+..+.
T Consensus 144 ~~lId~~i~~l~~~~ 158 (445)
T PRK13428 144 SATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHhhccC
Confidence 445578888888874
No 100
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.47 E-value=2.3e+02 Score=24.63 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=10.0
Q ss_pred cHHHHHhhHHH-HHHHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVEEE 131 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~~~ 131 (285)
++..++.+|.+ |...+.+.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~A 48 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDA 48 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566665554 44444443
No 101
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=42.15 E-value=1.6e+02 Score=23.60 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=7.5
Q ss_pred cHHHHHhhHHH-HHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVE 129 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~ 129 (285)
++..++.+|.. |...+.
T Consensus 32 pi~~~l~~R~~~I~~~l~ 49 (164)
T PRK14471 32 PILGAVKEREDSIKNALA 49 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 34455554443 444433
No 102
>PRK09098 type III secretion system protein HrpB; Validated
Probab=40.33 E-value=65 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHcchhh
Q 023266 175 NEKAEAEKILQIKRAEGEAESKYLSGLGI 203 (285)
Q Consensus 175 ~~~Aeae~~~~i~~A~aeaea~~~~Aea~ 203 (285)
+.+|+.++...+..|+.+.+ ....+|+
T Consensus 56 l~~A~~~A~~I~~~A~~e~e--~~~~~Gy 82 (233)
T PRK09098 56 VAEARAQAEAILEAARREAD--RSARRGY 82 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33444444444444443333 3333444
No 103
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.31 E-value=2e+02 Score=23.12 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 023266 238 LVTQYFDTMKEI 249 (285)
Q Consensus 238 l~~~~le~l~~~ 249 (285)
+...|-|.|.++
T Consensus 122 ~~~~~~~~~i~~ 133 (155)
T PRK06569 122 FRTNKSEAIIKL 133 (155)
T ss_pred HHHhHHHHHHHH
Confidence 334455555544
No 104
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=37.92 E-value=1.4e+02 Score=21.00 Aligned_cols=27 Identities=33% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023266 167 AARLRVAANEKAEAEKILQIKRAEGEA 193 (285)
Q Consensus 167 Ae~~~~a~~~~Aeae~~~~i~~A~aea 193 (285)
|+.+.+..+..|+.++...+..|+.++
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A 33 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEA 33 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 105
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=37.61 E-value=1.8e+02 Score=21.89 Aligned_cols=72 Identities=15% Similarity=0.016 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 023266 174 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEI 249 (285)
Q Consensus 174 ~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~ 249 (285)
...++++++.+.....+-.+|-.++...|+.....---++...++.+++.-+.-.-++ ..+..+|.-+-+++
T Consensus 25 ~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp~~d----e~i~tmW~TSrqqi 96 (109)
T PHA02571 25 ARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQPYTD----ELIETMWETSRQQI 96 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHH
Confidence 3445566666666777777788888777664433333356678888888877643333 34445555544443
No 106
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=37.27 E-value=2.5e+02 Score=23.57 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023266 157 VKRAMN 162 (285)
Q Consensus 157 v~~ai~ 162 (285)
+...++
T Consensus 73 i~~~L~ 78 (205)
T PRK06231 73 TQRFLN 78 (205)
T ss_pred HHHHHH
Confidence 333333
No 107
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.90 E-value=2.3e+02 Score=22.96 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=11.2
Q ss_pred ccCCcHHHHHhhHHH-HHHHHH
Q 023266 109 IPKLNLDDAFEQKNE-IAKAVE 129 (285)
Q Consensus 109 i~~~~~~ei~~~R~~-i~~~i~ 129 (285)
+.-.++..++.+|.+ |.+.+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALK 60 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 334446777776654 444443
No 108
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=36.04 E-value=31 Score=27.35 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEEeecCCCH
Q 023266 126 KAVEEELEKAMSAYGYEIVQTLIVDIEPDE 155 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 155 (285)
-++++.|.+.|+++|++|.++.-.+.++|+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 467888899999999999998765666665
No 109
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=35.85 E-value=2.7e+02 Score=23.59 Aligned_cols=85 Identities=22% Similarity=0.352 Sum_probs=53.3
Q ss_pred EeeCCcccccCCcEEEEEEEEEEEEccchhhhhhcccCC-hHHHHHHHHHHHHHHHccCCcHHHHHhh--HHHHHHHHHH
Q 023266 54 LDVRCETKTKDNVFVNVVASVQYRALAHKANDAFYKLSN-TRTQIQAYVFDVIRASIPKLNLDDAFEQ--KNEIAKAVEE 130 (285)
Q Consensus 54 ~~~~~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~-~~~~l~~~~~~~lr~vi~~~~~~ei~~~--R~~i~~~i~~ 130 (285)
++...++.|+||..+.|-+.+.=+ ++..+ -...|+..+.+.+.+..+..++++++.. -+.+..+|.+
T Consensus 104 Idai~dVkTkDGy~~RV~~~~~T~----------~ra~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~ 173 (214)
T COG1890 104 IDAIVDVKTKDGYVLRVKAMAFTR----------RRAKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEE 173 (214)
T ss_pred eeeEEEEEecCCcEEEEEEEEEEe----------hhcccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHH
Confidence 333457899999998876654321 11333 3457999999999999999999999862 3445555555
Q ss_pred HHHHHhhhcCeEEEEEEE
Q 023266 131 ELEKAMSAYGYEIVQTLI 148 (285)
Q Consensus 131 ~l~~~l~~~Gi~v~~v~I 148 (285)
.-+.-.==..++|.-+.+
T Consensus 174 ~akkIyPLr~veIrK~kv 191 (214)
T COG1890 174 AAKKIYPLRKVEIRKSKV 191 (214)
T ss_pred HhhhcccchheEEEeeee
Confidence 443322111445544443
No 110
>PRK15322 invasion protein OrgB; Provisional
Probab=34.65 E-value=2.8e+02 Score=23.40 Aligned_cols=31 Identities=3% Similarity=0.241 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCcEEEEcCCC
Q 023266 230 AKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGP 264 (285)
Q Consensus 230 ~~~~~~~~l~~~~le~l~~~~~~~~~~~i~lp~~~ 264 (285)
.|+++ ..+...|+..+++. ...-.+++|.+.
T Consensus 91 ~pd~L-L~~le~Wl~~l~~~---~~pL~l~lP~~a 121 (210)
T PRK15322 91 HPETL-LTVLDEWLRDFDKP---EGQLFLTLPVNA 121 (210)
T ss_pred CHHHH-HHHHHHHHHhCccc---cCceeEecChhh
Confidence 34443 23334566666654 245668888753
No 111
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=34.03 E-value=2.4e+02 Score=22.46 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023266 157 VKRAMN 162 (285)
Q Consensus 157 v~~ai~ 162 (285)
+...|+
T Consensus 33 i~~~l~ 38 (164)
T PRK14471 33 ILGAVK 38 (164)
T ss_pred HHHHHH
Confidence 333333
No 112
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=33.67 E-value=2e+02 Score=21.31 Aligned_cols=17 Identities=35% Similarity=0.229 Sum_probs=6.6
Q ss_pred HHHHhhcchHHHHHHcc
Q 023266 184 LQIKRAEGEAESKYLSG 200 (285)
Q Consensus 184 ~~i~~A~aeaea~~~~A 200 (285)
..+..|+.+++..+..|
T Consensus 43 eii~eA~~eA~~ile~A 59 (103)
T PRK08404 43 EIIKKAEEEAQKLIEKK 59 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 113
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=33.40 E-value=1.9e+02 Score=21.14 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHcchhhHHH
Q 023266 175 NEKAEAEKILQIKRAEGEAESKYLSGLGIARQ 206 (285)
Q Consensus 175 ~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a 206 (285)
...||.++...+..|+.++...+..|..+|+.
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ 40 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEK 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544444443
No 114
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=33.40 E-value=1.4e+02 Score=22.38 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023266 160 AMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~ 198 (285)
-|..-+.||.++...+.+|...+..++..|+-||+..+.
T Consensus 7 GIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 7 GIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777776666677777777777777777665543
No 115
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=31.01 E-value=1.1e+02 Score=24.04 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=35.4
Q ss_pred EEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHHHhhhc-CeEEEE
Q 023266 71 VASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEKAMSAY-GYEIVQ 145 (285)
Q Consensus 71 ~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~-Gi~v~~ 145 (285)
.+.+.||+.||.. .+.+.+ ++-+.++++.++.++.-+.+|+++..-.=-+..+.. ||.|.+
T Consensus 94 TG~v~WR~rpPSv-----~vrgve---------aV~e~L~rmgf~rFiRTk~EinKeAiLnepe~~kGiaGiki~~ 155 (170)
T COG4396 94 TGLVKWRIRPPSV-----KVRGVE---------AVLEWLSRMGFARFIRTKKEINKEAILNEPEFSKGIAGIKIVS 155 (170)
T ss_pred eeeEEEeecCCcc-----eeccHH---------HHHHHHHHhhHHHHHHhHHHhcHHHHhCChhhhcCCCceeeec
Confidence 5679999999742 223322 233445577788888888888765433222222222 676643
No 116
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=30.99 E-value=1.4e+02 Score=24.76 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023266 167 AARLRVAANEKAEAEKILQIK 187 (285)
Q Consensus 167 Ae~~~~a~~~~Aeae~~~~i~ 187 (285)
|+++++.-+..|+.+++..+.
T Consensus 39 A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 39 ARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444
No 117
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.70 E-value=1.8e+02 Score=28.22 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=6.7
Q ss_pred hhhcCeEEEEE
Q 023266 136 MSAYGYEIVQT 146 (285)
Q Consensus 136 l~~~Gi~v~~v 146 (285)
|..+|+.+++-
T Consensus 504 l~~~g~~led~ 514 (586)
T KOG2007|consen 504 LLELGVRLEDR 514 (586)
T ss_pred HHHhhhHHHhC
Confidence 55677766653
No 118
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=30.30 E-value=3.8e+02 Score=23.54 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 023266 167 AARLRVAANEKAEAEKILQIKRAE 190 (285)
Q Consensus 167 Ae~~~~a~~~~Aeae~~~~i~~A~ 190 (285)
|..+++.-..+|+.+.+..+..|+
T Consensus 86 ~~~ea~~~l~~a~~q~e~~~~ea~ 109 (281)
T PRK06669 86 KTDEASSIIEKLQMQIEREQEEWE 109 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333333333333
No 119
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.06 E-value=2.8e+02 Score=21.96 Aligned_cols=9 Identities=0% Similarity=0.379 Sum_probs=4.1
Q ss_pred HHHHHhhHH
Q 023266 114 LDDAFEQKN 122 (285)
Q Consensus 114 ~~ei~~~R~ 122 (285)
+..++..|.
T Consensus 27 i~~~l~~R~ 35 (159)
T PRK09173 27 IARSLDARA 35 (159)
T ss_pred HHHHHHHHH
Confidence 444555443
No 120
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.08 E-value=3.2e+02 Score=22.31 Aligned_cols=7 Identities=0% Similarity=0.074 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 023266 240 TQYFDTM 246 (285)
Q Consensus 240 ~~~le~l 246 (285)
..+++.+
T Consensus 170 d~~i~~l 176 (184)
T CHL00019 170 NANIGLL 176 (184)
T ss_pred HHHHHHH
Confidence 3444444
No 121
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=28.91 E-value=2.5e+02 Score=21.10 Aligned_cols=21 Identities=5% Similarity=0.107 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 023266 202 GIARQRQAIVDGLRDSVLGFS 222 (285)
Q Consensus 202 a~a~a~~~~a~a~~~~~~~~~ 222 (285)
++.++..+.++|..++-....
T Consensus 67 ~e~ea~eI~~~ae~~~~~~~~ 87 (108)
T COG2811 67 AEEEAEEILAEAEKEASAILS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554444444
No 122
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=28.04 E-value=3.2e+02 Score=22.01 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.6
Q ss_pred cHHHHHhhHH
Q 023266 113 NLDDAFEQKN 122 (285)
Q Consensus 113 ~~~ei~~~R~ 122 (285)
++.+++.+|.
T Consensus 46 Pi~~~l~~R~ 55 (167)
T PRK08475 46 PLKNFYKSRI 55 (167)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 123
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.69 E-value=2.8e+02 Score=21.27 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 023266 157 VKRAMNE 163 (285)
Q Consensus 157 v~~ai~~ 163 (285)
+...|++
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 4444443
No 124
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.93 E-value=3.3e+02 Score=22.36 Aligned_cols=13 Identities=0% Similarity=-0.304 Sum_probs=5.4
Q ss_pred CcEEEEcCCCCch
Q 023266 255 SSAVFIPHGPGAV 267 (285)
Q Consensus 255 ~~~i~lp~~~~~~ 267 (285)
-.+..-|.|..-+
T Consensus 122 i~i~~~~~D~~~~ 134 (198)
T PRK03963 122 VVVRSNERTLKLI 134 (198)
T ss_pred EEEEEccccHHHH
Confidence 3444444443333
No 125
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=26.46 E-value=58 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEE
Q 023266 126 KAVEEELEKAMSAYGYEIVQTLI 148 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v~~v~I 148 (285)
-++++.|.+.|+++|.+|.++.-
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D~G~ 33 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVIDKGT 33 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCC
Confidence 46788889999999999999875
No 126
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.37 E-value=8.8e+02 Score=26.50 Aligned_cols=23 Identities=13% Similarity=0.413 Sum_probs=16.0
Q ss_pred EEEcCCCCchhhHHHHHHHHHHh
Q 023266 258 VFIPHGPGAVRDVATQIRDGLLQ 280 (285)
Q Consensus 258 i~lp~~~~~~~~~~~~~~~~~~~ 280 (285)
+-||..+..+..|..+|.-.++.
T Consensus 1504 l~lp~tpeqi~~L~~~I~e~v~s 1526 (1758)
T KOG0994|consen 1504 LELPLTPEQIQQLTGEIQERVAS 1526 (1758)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHh
Confidence 35777777777777777666554
No 127
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=25.68 E-value=1.9e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHH
Q 023266 126 KAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKR 159 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ 159 (285)
-++++.|.+.|+++|.+|.++.-.+-+ |.++-+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~G~~~~~-~~dy~~ 43 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDFGTYSED-SVDYPD 43 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESESSTS-T--HHH
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCC-CCCHHH
Confidence 467888889999999999999988755 444433
No 128
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=25.50 E-value=3.9e+02 Score=23.44 Aligned_cols=9 Identities=22% Similarity=0.350 Sum_probs=3.2
Q ss_pred HHhhcchHH
Q 023266 186 IKRAEGEAE 194 (285)
Q Consensus 186 i~~A~aeae 194 (285)
+..|+.+++
T Consensus 94 l~~a~~q~e 102 (281)
T PRK06669 94 IEKLQMQIE 102 (281)
T ss_pred HHHHHHHHH
Confidence 333333333
No 129
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=25.27 E-value=3.8e+02 Score=21.86 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=9.7
Q ss_pred cHHHHHhhHHH-HHHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVEE 130 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~~ 130 (285)
.+..++.+|.+ |...+.+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 35677776553 4444433
No 130
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.98 E-value=3.5e+02 Score=21.39 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=4.7
Q ss_pred CHHHHHHHHH
Q 023266 154 DEHVKRAMNE 163 (285)
Q Consensus 154 p~~v~~ai~~ 163 (285)
|..+...|++
T Consensus 24 ~~pi~~~l~~ 33 (159)
T PRK09173 24 PGMIARSLDA 33 (159)
T ss_pred HHHHHHHHHH
Confidence 4444455544
No 131
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.26 E-value=25 Score=26.86 Aligned_cols=7 Identities=0% Similarity=0.245 Sum_probs=2.7
Q ss_pred HHHhhhc
Q 023266 133 EKAMSAY 139 (285)
Q Consensus 133 ~~~l~~~ 139 (285)
+..+..+
T Consensus 45 ~~~~~~l 51 (131)
T PF05103_consen 45 KEEIEEL 51 (131)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
Confidence 3333433
No 132
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.70 E-value=3.8e+02 Score=21.42 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.6
Q ss_pred cHHHHHhhH
Q 023266 113 NLDDAFEQK 121 (285)
Q Consensus 113 ~~~ei~~~R 121 (285)
++..++.+|
T Consensus 30 pi~~~l~~R 38 (161)
T COG0711 30 PILKALDER 38 (161)
T ss_pred HHHHHHHHH
Confidence 333444433
No 133
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.99 E-value=6.6e+02 Score=23.88 Aligned_cols=18 Identities=6% Similarity=0.294 Sum_probs=8.8
Q ss_pred cHHHHHhhHHH-HHHHHHH
Q 023266 113 NLDDAFEQKNE-IAKAVEE 130 (285)
Q Consensus 113 ~~~ei~~~R~~-i~~~i~~ 130 (285)
++..++.+|.+ |.+.+.+
T Consensus 25 Pi~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 35556665543 4444433
No 134
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=22.27 E-value=74 Score=25.28 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhcCeEEEEEEE
Q 023266 126 KAVEEELEKAMSAYGYEIVQTLI 148 (285)
Q Consensus 126 ~~i~~~l~~~l~~~Gi~v~~v~I 148 (285)
-.+++.|.+.|+++|.+|.++.-
T Consensus 10 ~~lK~~l~~~L~~~g~eV~D~G~ 32 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVIDCGT 32 (144)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCC
Confidence 46788889999999999999875
No 135
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.26 E-value=2.6e+02 Score=19.78 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHHHHH-HccCCcHHHHHh-----hHHHHHHHHHHHHHHHh
Q 023266 92 NTRTQIQAYVFDVIRA-SIPKLNLDDAFE-----QKNEIAKAVEEELEKAM 136 (285)
Q Consensus 92 ~~~~~l~~~~~~~lr~-vi~~~~~~ei~~-----~R~~i~~~i~~~l~~~l 136 (285)
.+.+.++.+++..+++ -..+.++++++. .|..+-..++..|-..+
T Consensus 31 GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~I 81 (86)
T PF10163_consen 31 GWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRI 81 (86)
T ss_dssp THHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4556677788888877 566789999985 45555555555554443
No 136
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=21.18 E-value=3.9e+02 Score=23.16 Aligned_cols=14 Identities=21% Similarity=0.007 Sum_probs=5.4
Q ss_pred cEEEEcCCCCchhh
Q 023266 256 SAVFIPHGPGAVRD 269 (285)
Q Consensus 256 ~~i~lp~~~~~~~~ 269 (285)
..+.+=.+|.+...
T Consensus 176 ~~i~I~v~p~d~~~ 189 (255)
T TIGR03825 176 DEVSIYVHPHWYER 189 (255)
T ss_pred CcEEEEECHHHHHH
Confidence 33433333444433
No 137
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=20.95 E-value=1.8e+02 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhc-CeEEEEEEE
Q 023266 124 IAKAVEEELEKAMSAY-GYEIVQTLI 148 (285)
Q Consensus 124 i~~~i~~~l~~~l~~~-Gi~v~~v~I 148 (285)
+.+.+++.+.+.+..+ |+.+.+|.|
T Consensus 77 v~~~iq~~V~~~v~~~tg~~v~~V~V 102 (108)
T PF03780_consen 77 VAEEIQEKVKEAVEEMTGIEVSEVNV 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCeeEEEEE
Confidence 3445555555555554 888776654
Done!