Query 023266
Match_columns 285
No_of_seqs 196 out of 1740
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 7E-30 2.4E-34 212.6 16.7 177 42-256 4-181 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 4.8E-27 1.6E-31 184.6 12.2 130 34-167 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 6.4E-23 2.2E-27 163.0 3.1 126 43-168 6-139 (143)
4 2rpb_A Hypothetical membrane p 99.9 1.3E-21 4.5E-26 149.3 9.2 110 45-156 3-113 (113)
5 2zuo_A MVP, major vault protei 99.0 1.2E-07 4.1E-12 91.7 22.9 153 7-162 459-655 (861)
6 2zuo_A MVP, major vault protei 84.8 6.3 0.00022 38.7 10.6 27 136-162 633-659 (861)
7 3bk6_A PH stomatin; archaea, t 82.9 1.1 3.7E-05 35.9 4.0 21 188-208 127-147 (188)
8 2xzm_4 40S ribosomal protein S 77.5 6.9 0.00024 33.0 7.1 91 58-151 128-221 (265)
9 3v6i_A V-type ATP synthase sub 73.5 16 0.00055 28.9 8.3 14 253-268 115-128 (187)
10 3u5c_B RP10A, 40S ribosomal pr 69.3 7.4 0.00025 32.8 5.4 90 58-152 125-216 (255)
11 4efa_G V-type proton ATPase su 64.8 26 0.00087 25.8 7.0 41 158-198 9-49 (119)
12 3v6i_B V-type ATP synthase, su 63.2 16 0.00055 26.0 5.3 18 168-185 26-43 (105)
13 3v6i_B V-type ATP synthase, su 59.9 44 0.0015 23.7 7.9 32 172-203 19-50 (105)
14 2k6i_A Uncharacterized protein 58.5 15 0.00051 23.2 4.0 20 166-185 23-42 (56)
15 3j20_A 30S ribosomal protein S 57.3 73 0.0025 25.6 9.0 68 59-135 108-177 (198)
16 2k6i_A Uncharacterized protein 56.0 6.9 0.00024 24.7 2.1 21 176-196 22-42 (56)
17 2kk7_A V-type ATP synthase sub 54.1 36 0.0012 21.0 5.6 16 188-203 27-42 (52)
18 2b5u_A Colicin E3; high resolu 52.0 78 0.0027 29.1 9.1 35 139-173 278-312 (551)
19 2acm_B Mucin-1; auto-catalytic 49.8 25 0.00087 22.0 4.0 24 133-156 29-52 (55)
20 4efa_E V-type proton ATPase su 39.6 1.4E+02 0.0048 24.2 8.5 10 154-163 10-19 (233)
21 4efa_G V-type proton ATPase su 30.0 1.2E+02 0.0042 22.1 5.8 34 174-207 14-47 (119)
22 3mhs_B Protein SUS1; multi-pro 24.5 1.3E+02 0.0043 21.1 4.8 27 92-119 37-63 (96)
23 4dhx_B Enhancer of yellow 2 tr 20.4 2.1E+02 0.0073 20.1 5.3 27 93-119 42-69 (101)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=7e-30 Score=212.65 Aligned_cols=177 Identities=25% Similarity=0.268 Sum_probs=139.7
Q ss_pred eEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhh
Q 023266 42 QLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQ 120 (285)
Q Consensus 42 ~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~ 120 (285)
..+.++|+|.++++++. .++|+|+++|.++++++|||.|| ..+++++.|+...+.+.+++++|+++|++++++++++
T Consensus 4 ~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~ 81 (188)
T 3bk6_A 4 EKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE 81 (188)
T ss_dssp EECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred EEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh
Confidence 34678999999999975 89999999999999999999985 5778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHcc
Q 023266 121 KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYLSG 200 (285)
Q Consensus 121 R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~~A 200 (285)
|++|+..+++.|++.+.+|||+|.+|.|++|+||+++.++|++++.|++++++.+.+||| ++++.++.+
T Consensus 82 R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aeg-----------e~~a~~~~a 150 (188)
T 3bk6_A 82 RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEA-----------ERQAAEKLR 150 (188)
T ss_dssp HHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877665544444 444444433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHHHHHHHhhcCCCc
Q 023266 201 LGIARQRQAIVDGLRDSVLGFSINVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSS 256 (285)
Q Consensus 201 ea~a~a~~~~a~a~~~~~~~~~~a~~~~~~~~~~~~~l~~~~le~l~~~~~~~~~~ 256 (285)
+|. +.++. +| ..++.+|||++.+++.+++++
T Consensus 151 ~a~---------------~~~~~------~~----~~l~lr~le~~~~ia~~~~~~ 181 (188)
T 3bk6_A 151 EAA---------------EIISE------HP----MALQLRTLQTISDVAGDKSNL 181 (188)
T ss_dssp HHH---------------HHHHH------CT----THHHHHHTTC-----------
T ss_pred HHH---------------HHHHh------CH----HHHHHHHHHHHHHHhcCCCCc
Confidence 321 11221 33 346678999999998765543
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.94 E-value=4.8e-27 Score=184.60 Aligned_cols=130 Identities=22% Similarity=0.297 Sum_probs=105.3
Q ss_pred EEcCccceeEEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCC
Q 023266 34 FLPWILGHQLAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKL 112 (285)
Q Consensus 34 ~~~P~i~~~~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~ 112 (285)
+.+||++ .+.++|+|.++++++. +++|+|++.+.++++++|||.|| .+++|++.|++..+..++++++|+++|++
T Consensus 3 l~~P~id--~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTD--SAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNA--TLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCcee--EEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeeh--HHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 6789984 3678999999999975 89999999999999999999985 78999999999999999999999999999
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHH
Q 023266 113 NLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAA 167 (285)
Q Consensus 113 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~A 167 (285)
++++++++|++|+..+++.+++.+++|||+|.+|.|++++||+++.+||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.86 E-value=6.4e-23 Score=162.99 Aligned_cols=126 Identities=16% Similarity=0.290 Sum_probs=108.9
Q ss_pred EEeeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEc-cchhh-hhhccc-----CChHHHHHHHHHHHHHHHccCCcH
Q 023266 43 LAGHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRAL-AHKAN-DAFYKL-----SNTRTQIQAYVFDVIRASIPKLNL 114 (285)
Q Consensus 43 ~~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~-~~~~~-~~~~~~-----~~~~~~l~~~~~~~lr~vi~~~~~ 114 (285)
.+.++|+|.++++++. +++|+|++++.||++++|||. ||... ..+.++ ......+.+.+++.+|+++|++++
T Consensus 6 ~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tl 85 (143)
T 1win_A 6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85 (143)
T ss_dssp CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3568999999999986 899999999999999999998 44321 112121 124567899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHHHHHHHHHHHHHH
Q 023266 115 DDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAA 168 (285)
Q Consensus 115 ~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae 168 (285)
++++++|++|+..+++.+++.+.+|||+|.+|.|++|+||+++.+||.+++.||
T Consensus 86 deils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999998877665
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.85 E-value=1.3e-21 Score=149.26 Aligned_cols=110 Identities=31% Similarity=0.440 Sum_probs=104.5
Q ss_pred eeeeeeEEEEeeCC-cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHH
Q 023266 45 GHLTLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNE 123 (285)
Q Consensus 45 ~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~ 123 (285)
.++|+|.++++++. .++|+|+++|.++++++|||.|| .++++++.++...|.+.+++++|+++|++++++++++|++
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~ 80 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDP--VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDI 80 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCT--TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHH
T ss_pred eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHH
Confidence 35899999999986 99999999999999999999985 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCeEEEEEEEeecCCCHH
Q 023266 124 IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 124 i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
|+..+++.+++.+++|||+|.+|.|++++||++
T Consensus 81 i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 81 INARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.97 E-value=1.2e-07 Score=91.71 Aligned_cols=153 Identities=14% Similarity=0.159 Sum_probs=105.4
Q ss_pred EEEecCCeEEEEeec--CceeeEeCCcceEEcCccceeEEeeeeee---------EEE--EeeC-------CcccccCCc
Q 023266 7 CVQVDQSTVAIKERF--GKFEDVLEPGCHFLPWILGHQLAGHLTLR---------LQQ--LDVR-------CETKTKDNV 66 (285)
Q Consensus 7 ~~~V~~ge~~Vv~~~--Gk~~~~~~pG~h~~~P~i~~~~~~~v~~r---------~~~--~~~~-------~~~~T~D~~ 66 (285)
.|.||.+...-++-+ |+..-+.||-+.++-|- + + +..+++. .+. +.+. +.+-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E-~-ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-E-Q-FTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-C-E-ECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-c-c-EEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 456888888888765 44445679988777664 2 1 2222221 111 1122 267899999
Q ss_pred EEEEEEEEEEEEc--c---chhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHH-HHHHHHH---------
Q 023266 67 FVNVVASVQYRAL--A---HKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEI-AKAVEEE--------- 131 (285)
Q Consensus 67 ~v~v~~~v~yrI~--~---~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i-~~~i~~~--------- 131 (285)
.+.+..++.|... | +.....+|.+.|+-.-+-..+.+.+|..+++.++++++.+-..| ...+...
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999884 3 23347789999999999999999999999999999999865544 2222110
Q ss_pred ------HH--HHhhhcCeEEEEEEEeecCC-CHHHHHHHH
Q 023266 132 ------LE--KAMSAYGYEIVQTLIVDIEP-DEHVKRAMN 162 (285)
Q Consensus 132 ------l~--~~l~~~Gi~v~~v~I~~i~~-p~~v~~ai~ 162 (285)
.+ -.+...|+.|++|.|+++.| ++...++++
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 00 12455699999999999997 444555555
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=84.80 E-value=6.3 Score=38.68 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=16.4
Q ss_pred hhhcCeEEEEEEEeecCCCHHHHHHHH
Q 023266 136 MSAYGYEIVQTLIVDIEPDEHVKRAMN 162 (285)
Q Consensus 136 l~~~Gi~v~~v~I~~i~~p~~v~~ai~ 162 (285)
|-=..|.|.+|...|-+--+.+++++.
T Consensus 633 lvitsVDvqsvEpvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 633 LVVSSVDVQSVEPVDQRTRDALQRSVQ 659 (861)
T ss_dssp EEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccCHHHHHHHHHHHH
Confidence 334567777777777765555555444
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=82.93 E-value=1.1 Score=35.92 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=13.0
Q ss_pred hhcchHHHHHHcchhhHHHHH
Q 023266 188 RAEGEAESKYLSGLGIARQRQ 208 (285)
Q Consensus 188 ~A~aeaea~~~~Aea~a~a~~ 208 (285)
+|+.++++.+++|+|++++.+
T Consensus 127 ~Aere~~A~i~~Aege~~a~~ 147 (188)
T 3bk6_A 127 EAERERRARITLAEAERQAAE 147 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 455566666777777666543
No 8
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=77.52 E-value=6.9 Score=33.04 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=57.8
Q ss_pred CcccccCCcEEEEEEEEEEEEcc---chhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhHHHHHHHHHHHHHH
Q 023266 58 CETKTKDNVFVNVVASVQYRALA---HKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQKNEIAKAVEEELEK 134 (285)
Q Consensus 58 ~~~~T~D~~~v~v~~~v~yrI~~---~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R~~i~~~i~~~l~~ 134 (285)
.++.|+||..+.+-+..+-+=.. ....+..|.-..-...|+..+.+.+.+.++..++++++..- +...+-.++..
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~keI~k 205 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKKIEK 205 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHHHHH
Confidence 36889999999887665544332 22222333333445689999999999999999999998632 33444444444
Q ss_pred HhhhcCeEEEEEEEeec
Q 023266 135 AMSAYGYEIVQTLIVDI 151 (285)
Q Consensus 135 ~l~~~Gi~v~~v~I~~i 151 (285)
.+... +-+.+|.|+.+
T Consensus 206 ~~k~I-yPL~~V~IrKv 221 (265)
T 2xzm_4 206 ETKNI-FPLQNITIRKV 221 (265)
T ss_dssp HHTTT-CCEEEEEEEEE
T ss_pred Hhhhc-cccceEEEEEE
Confidence 44443 34555666553
No 9
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=73.45 E-value=16 Score=28.90 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=6.5
Q ss_pred CCCcEEEEcCCCCchh
Q 023266 253 SKSSAVFIPHGPGAVR 268 (285)
Q Consensus 253 ~~~~~i~lp~~~~~~~ 268 (285)
++..+++ ..+.+..
T Consensus 115 ~~~~~vv--~~~~D~~ 128 (187)
T 3v6i_A 115 PGAKALV--ANPEDLP 128 (187)
T ss_dssp TTCCEEE--ECTTTHH
T ss_pred CCCCeEE--ECHHHHH
Confidence 3444544 3445544
No 10
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=69.34 E-value=7.4 Score=32.76 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=58.9
Q ss_pred CcccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhH--HHHHHHHHHHHHHH
Q 023266 58 CETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQK--NEIAKAVEEELEKA 135 (285)
Q Consensus 58 ~~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R--~~i~~~i~~~l~~~ 135 (285)
.++.|+||..+.+-+..+-.-.+....+..|--..-...|+..+.+.+.+.++..++++++..- +.|..+|....+..
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I 204 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI 204 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc
Confidence 3789999999988766553333222222333334455689999999999999999999998743 55666665554432
Q ss_pred hhhcCeEEEEEEEeecC
Q 023266 136 MSAYGYEIVQTLIVDIE 152 (285)
Q Consensus 136 l~~~Gi~v~~v~I~~i~ 152 (285)
+-+.+|.|+.+.
T Consensus 205 -----yPL~~V~IrKvK 216 (255)
T 3u5c_B 205 -----FPLQNIHVRKVK 216 (255)
T ss_dssp -----CCCEEEECCCEE
T ss_pred -----cccceEEEEEEE
Confidence 334556555544
No 11
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=64.84 E-value=26 Score=25.84 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023266 158 KRAMNEINAAARLRVAANEKAEAEKILQIKRAEGEAESKYL 198 (285)
Q Consensus 158 ~~ai~~~~~Ae~~~~a~~~~Aeae~~~~i~~A~aeaea~~~ 198 (285)
.+.|..-+.||+++...+.+|...+..++..|+.+|++.+-
T Consensus 9 s~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe 49 (119)
T 4efa_G 9 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888899988888888888888888888888777654
No 12
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=63.24 E-value=16 Score=25.96 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023266 168 ARLRVAANEKAEAEKILQ 185 (285)
Q Consensus 168 e~~~~a~~~~Aeae~~~~ 185 (285)
.++.++.+.+||+++...
T Consensus 26 r~eA~~~v~~AEAeA~ri 43 (105)
T 3v6i_B 26 KKEAEERVKRAEAEAKAL 43 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 13
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=59.89 E-value=44 Score=23.74 Aligned_cols=32 Identities=28% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHcchhh
Q 023266 172 VAANEKAEAEKILQIKRAEGEAESKYLSGLGI 203 (285)
Q Consensus 172 ~a~~~~Aeae~~~~i~~A~aeaea~~~~Aea~ 203 (285)
.+++..|..++...+..|++++.+....|+..
T Consensus 19 ~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~ 50 (105)
T 3v6i_B 19 LERLEAAKKEAEERVKRAEAEAKALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555554444443
No 14
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=58.54 E-value=15 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.028 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023266 166 AAARLRVAANEKAEAEKILQ 185 (285)
Q Consensus 166 ~Ae~~~~a~~~~Aeae~~~~ 185 (285)
.||+++...+.+|+.++...
T Consensus 23 eAE~~A~~iVeeA~~ea~~i 42 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQI 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 15
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.27 E-value=73 Score=25.60 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=49.5
Q ss_pred cccccCCcEEEEEEEEEEEEccchhhhhhcccCChHHHHHHHHHHHHHHHccCCcHHHHHhhH--HHHHHHHHHHHHHH
Q 023266 59 ETKTKDNVFVNVVASVQYRALAHKANDAFYKLSNTRTQIQAYVFDVIRASIPKLNLDDAFEQK--NEIAKAVEEELEKA 135 (285)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~~~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ei~~~R--~~i~~~i~~~l~~~ 135 (285)
++.|+||..+.+-+...-.= +--..-...|+..+.+.+.+.+++.++++++..- +.+..+|....+.-
T Consensus 108 dVkT~DGy~lRvf~i~fT~k---------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I 177 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI 177 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS---------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEEEec---------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc
Confidence 68899999998766643211 1112344689999999999999999999998743 66777777766554
No 16
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=55.98 E-value=6.9 Score=24.74 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhcchHHHH
Q 023266 176 EKAEAEKILQIKRAEGEAESK 196 (285)
Q Consensus 176 ~~Aeae~~~~i~~A~aeaea~ 196 (285)
..||.++...+..|+.+++..
T Consensus 22 KeAE~~A~~iVeeA~~ea~~i 42 (56)
T 2k6i_A 22 KLAEEQAVKEIEEAKNRAEQI 42 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555554444444443333
No 17
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=54.12 E-value=36 Score=20.97 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=6.6
Q ss_pred hhcchHHHHHHcchhh
Q 023266 188 RAEGEAESKYLSGLGI 203 (285)
Q Consensus 188 ~A~aeaea~~~~Aea~ 203 (285)
.++|++++..+.+++.
T Consensus 27 l~eA~~eA~~Ii~eA~ 42 (52)
T 2kk7_A 27 ISEAEAEKAKILEKAK 42 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 18
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=52.01 E-value=78 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=29.5
Q ss_pred cCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Q 023266 139 YGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVA 173 (285)
Q Consensus 139 ~Gi~v~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a 173 (285)
-|++-.-|.+.+|-.|.++.+-.++..+++|+-..
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~ 312 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDA 312 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999888888877776543
No 19
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=49.83 E-value=25 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHHhhhcCeEEEEEEEeecCCCHH
Q 023266 133 EKAMSAYGYEIVQTLIVDIEPDEH 156 (285)
Q Consensus 133 ~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (285)
.+....|.+.|.+|.+.|+.+|-.
T Consensus 29 ~~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 29 TEAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHHCCCEEEEEEECC-----
T ss_pred hhccccccceecceeEEeccCCCc
Confidence 344568999999999999999854
No 20
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=39.64 E-value=1.4e+02 Score=24.21 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.4
Q ss_pred CHHHHHHHHH
Q 023266 154 DEHVKRAMNE 163 (285)
Q Consensus 154 p~~v~~ai~~ 163 (285)
|.++.+-+++
T Consensus 10 ~~~v~~~i~~ 19 (233)
T 4efa_E 10 PNQVNDELNK 19 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556555554
No 21
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=30.02 E-value=1.2e+02 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.034 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHcchhhHHHH
Q 023266 174 ANEKAEAEKILQIKRAEGEAESKYLSGLGIARQR 207 (285)
Q Consensus 174 ~~~~Aeae~~~~i~~A~aeaea~~~~Aea~a~a~ 207 (285)
+...||.++...+..|+..+......|..+|++.
T Consensus 14 qLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~E 47 (119)
T 4efa_G 14 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKE 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666565555543
No 22
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=24.47 E-value=1.3e+02 Score=21.09 Aligned_cols=27 Identities=4% Similarity=0.068 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHccCCcHHHHHh
Q 023266 92 NTRTQIQAYVFDVIRASIPKLNLDDAFE 119 (285)
Q Consensus 92 ~~~~~l~~~~~~~lr~vi~~~~~~ei~~ 119 (285)
.+.+-++.++++.+++- .+.++++++.
T Consensus 37 GW~Devr~~~r~~i~~~-~~vt~~~L~~ 63 (96)
T 3mhs_B 37 GWVDKVKDLTKSEMNIN-ESTNFTQILS 63 (96)
T ss_dssp THHHHHHHHHHHHHHHH-TCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhc-CCCCHHHHHH
Confidence 44556777788888777 8999999985
No 23
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=20.40 E-value=2.1e+02 Score=20.10 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHH-ccCCcHHHHHh
Q 023266 93 TRTQIQAYVFDVIRAS-IPKLNLDDAFE 119 (285)
Q Consensus 93 ~~~~l~~~~~~~lr~v-i~~~~~~ei~~ 119 (285)
+.+-++.++++.+++- +.+.++++++.
T Consensus 42 W~Devr~~~r~~i~~~g~~~vt~~~L~~ 69 (101)
T 4dhx_B 42 WKDQLKAHCKEVIKEKGLEHVTVDDLVA 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 3445666666666655 45788888885
Done!