Query 023267
Match_columns 285
No_of_seqs 131 out of 1446
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 1.5E-16 3.2E-21 129.9 -3.1 249 5-280 98-373 (419)
2 KOG4341 F-box protein containi 99.4 2.9E-15 6.3E-20 127.3 -5.8 234 7-279 74-355 (483)
3 PF12937 F-box-like: F-box-lik 99.0 2.7E-10 5.8E-15 69.1 3.1 36 5-40 1-36 (47)
4 PF00646 F-box: F-box domain; 98.6 1.7E-08 3.6E-13 61.5 0.9 36 5-40 3-38 (48)
5 smart00256 FBOX A Receptor for 98.5 9.4E-08 2E-12 55.9 2.2 33 8-40 1-33 (41)
6 KOG1909 Ran GTPase-activating 98.2 2.9E-06 6.3E-11 71.6 5.0 182 95-281 31-252 (382)
7 KOG2120 SCF ubiquitin ligase, 97.9 3.5E-06 7.5E-11 69.9 1.2 144 121-274 234-391 (419)
8 KOG4341 F-box protein containi 97.8 1.1E-05 2.5E-10 69.7 1.7 126 151-277 317-459 (483)
9 KOG1947 Leucine rich repeat pr 97.5 2.8E-06 6E-11 77.4 -5.5 120 151-272 240-389 (482)
10 PF07723 LRR_2: Leucine Rich R 97.5 0.00015 3.4E-09 37.4 3.1 25 155-179 1-26 (26)
11 KOG1947 Leucine rich repeat pr 97.5 2E-05 4.3E-10 71.9 -0.5 126 152-278 186-329 (482)
12 KOG3207 Beta-tubulin folding c 97.3 8.6E-05 1.9E-09 64.7 1.6 152 121-283 172-339 (505)
13 KOG3207 Beta-tubulin folding c 97.3 9.9E-06 2.1E-10 70.4 -4.3 126 121-254 121-257 (505)
14 cd00116 LRR_RI Leucine-rich re 97.3 0.00025 5.3E-09 61.1 3.8 128 154-282 137-290 (319)
15 cd00116 LRR_RI Leucine-rich re 97.3 0.00042 9.1E-09 59.7 5.2 126 154-282 108-262 (319)
16 PLN03210 Resistant to P. syrin 97.3 0.00028 6.2E-09 71.3 4.6 79 151-230 654-732 (1153)
17 PF14580 LRR_9: Leucine-rich r 97.2 6.8E-05 1.5E-09 58.6 -0.0 120 152-276 17-146 (175)
18 PLN03210 Resistant to P. syrin 97.2 0.00019 4.1E-09 72.5 2.6 78 175-252 798-878 (1153)
19 PLN00113 leucine-rich repeat r 97.0 0.00046 1E-08 68.7 3.5 147 121-282 93-248 (968)
20 PLN00113 leucine-rich repeat r 96.9 0.00064 1.4E-08 67.8 3.6 61 152-213 426-486 (968)
21 KOG3665 ZYG-1-like serine/thre 96.9 0.00075 1.6E-08 64.1 3.4 145 119-274 120-279 (699)
22 KOG0281 Beta-TrCP (transducin 96.5 0.00084 1.8E-08 56.7 0.5 36 2-37 72-111 (499)
23 KOG3665 ZYG-1-like serine/thre 96.4 0.00084 1.8E-08 63.7 0.1 130 152-282 120-262 (699)
24 PLN03215 ascorbic acid mannose 95.9 0.0052 1.1E-07 53.7 2.5 38 1-39 1-39 (373)
25 PF14580 LRR_9: Leucine-rich r 95.7 0.0033 7.1E-08 49.2 0.5 101 175-278 15-121 (175)
26 KOG2997 F-box protein FBX9 [Ge 95.2 0.007 1.5E-07 50.9 0.7 36 3-38 105-145 (366)
27 KOG3864 Uncharacterized conser 95.1 0.0027 5.8E-08 50.2 -1.8 75 156-231 103-184 (221)
28 PF12799 LRR_4: Leucine Rich r 95.0 0.011 2.4E-07 34.8 1.1 35 154-190 1-35 (44)
29 PF13855 LRR_8: Leucine rich r 94.6 0.014 3E-07 37.0 0.8 37 152-189 23-59 (61)
30 smart00367 LRR_CC Leucine-rich 94.6 0.017 3.6E-07 29.7 1.0 21 154-174 2-23 (26)
31 KOG4194 Membrane glycoprotein 94.5 0.0017 3.7E-08 59.1 -4.8 54 222-278 364-424 (873)
32 KOG3864 Uncharacterized conser 94.5 0.018 3.9E-07 45.6 1.3 64 150-213 121-187 (221)
33 smart00367 LRR_CC Leucine-rich 94.5 0.02 4.4E-07 29.4 1.1 18 178-195 1-18 (26)
34 PF13855 LRR_8: Leucine rich r 94.4 0.011 2.5E-07 37.3 0.1 54 223-279 1-58 (61)
35 COG5238 RNA1 Ran GTPase-activa 94.3 0.015 3.3E-07 48.2 0.5 91 96-190 32-131 (388)
36 PRK15386 type III secretion pr 93.9 0.044 9.6E-07 48.6 2.6 130 121-279 52-186 (426)
37 KOG4194 Membrane glycoprotein 93.5 0.042 9.1E-07 50.4 1.8 145 121-281 102-280 (873)
38 PRK15387 E3 ubiquitin-protein 92.9 0.16 3.4E-06 49.2 4.8 30 203-233 283-312 (788)
39 KOG0274 Cdc4 and related F-box 92.3 0.052 1.1E-06 50.3 0.8 37 2-38 105-141 (537)
40 KOG2739 Leucine-rich acidic nu 90.7 0.054 1.2E-06 44.6 -0.8 119 156-275 20-148 (260)
41 PRK15387 E3 ubiquitin-protein 90.6 0.28 6.1E-06 47.5 3.8 10 179-188 302-311 (788)
42 PF13013 F-box-like_2: F-box-l 90.0 0.18 3.8E-06 36.1 1.4 29 5-33 22-50 (109)
43 PF13516 LRR_6: Leucine Rich r 89.6 0.12 2.6E-06 25.8 0.3 22 153-174 1-22 (24)
44 PRK15370 E3 ubiquitin-protein 84.6 0.54 1.2E-05 45.6 1.8 32 243-280 346-377 (754)
45 KOG2982 Uncharacterized conser 84.3 0.2 4.4E-06 42.3 -1.0 100 154-253 45-156 (418)
46 PF12799 LRR_4: Leucine Rich r 84.3 0.57 1.2E-05 27.4 1.1 14 239-252 20-33 (44)
47 KOG2982 Uncharacterized conser 82.7 0.76 1.7E-05 39.0 1.7 81 152-233 69-156 (418)
48 KOG0618 Serine/threonine phosp 82.2 0.36 7.9E-06 46.8 -0.4 33 201-234 451-487 (1081)
49 KOG0618 Serine/threonine phosp 81.6 0.077 1.7E-06 51.2 -5.0 33 222-254 451-487 (1081)
50 KOG1909 Ran GTPase-activating 81.4 3.1 6.8E-05 36.0 4.9 88 121-213 185-281 (382)
51 KOG2739 Leucine-rich acidic nu 81.1 0.55 1.2E-05 38.8 0.3 80 152-231 63-151 (260)
52 KOG1644 U2-associated snRNP A' 78.4 4.2 9E-05 32.7 4.4 78 152-232 62-149 (233)
53 KOG1259 Nischarin, modulator o 73.5 2.2 4.7E-05 36.4 1.8 123 149-278 209-360 (490)
54 KOG1259 Nischarin, modulator o 72.6 2.9 6.2E-05 35.7 2.3 19 75-93 84-102 (490)
55 PF13504 LRR_7: Leucine rich r 72.5 2.4 5.2E-05 19.1 1.0 11 180-190 2-12 (17)
56 KOG1644 U2-associated snRNP A' 72.3 4.3 9.2E-05 32.6 3.0 60 152-212 86-150 (233)
57 PRK15370 E3 ubiquitin-protein 68.7 4.2 9.1E-05 39.6 2.8 16 264-279 409-424 (754)
58 KOG4408 Putative Mg2+ and Co2+ 68.2 1.3 2.8E-05 37.9 -0.7 34 5-38 8-41 (386)
59 PRK15386 type III secretion pr 66.8 6.8 0.00015 35.2 3.5 114 152-280 50-166 (426)
60 PF13306 LRR_5: Leucine rich r 65.6 4.9 0.00011 29.1 2.1 110 151-273 9-129 (129)
61 smart00368 LRR_RI Leucine rich 65.3 3.9 8.5E-05 21.1 1.1 22 154-175 2-23 (28)
62 KOG4658 Apoptotic ATPase [Sign 64.7 4 8.7E-05 40.5 1.9 103 151-254 542-653 (889)
63 COG5238 RNA1 Ran GTPase-activa 60.9 8.3 0.00018 32.6 2.7 24 152-175 28-51 (388)
64 PF00560 LRR_1: Leucine Rich R 57.3 9.5 0.00021 18.3 1.6 9 181-189 2-10 (22)
65 KOG2123 Uncharacterized conser 56.0 0.39 8.4E-06 40.3 -5.7 99 175-276 12-123 (388)
66 PLN03150 hypothetical protein; 54.5 9.3 0.0002 36.5 2.3 36 153-189 441-476 (623)
67 COG4886 Leucine-rich repeat (L 50.4 3.3 7.1E-05 36.8 -1.3 34 155-190 141-174 (394)
68 KOG3926 F-box proteins [Amino 50.0 10 0.00022 31.6 1.6 50 5-55 202-258 (332)
69 KOG0617 Ras suppressor protein 46.3 2.6 5.7E-05 32.9 -2.2 15 237-251 73-87 (264)
70 PLN03150 hypothetical protein; 41.2 16 0.00034 34.9 1.7 55 222-279 441-499 (623)
71 KOG4237 Extracellular matrix p 38.7 15 0.00033 32.7 1.0 57 222-281 273-333 (498)
72 KOG0531 Protein phosphatase 1, 36.8 5.4 0.00012 35.9 -2.1 34 153-188 94-127 (414)
73 KOG4658 Apoptotic ATPase [Sign 35.9 16 0.00035 36.4 0.9 67 149-215 712-783 (889)
74 PF08387 FBD: FBD; InterPro: 33.0 70 0.0015 19.1 3.1 37 243-279 14-51 (51)
75 smart00446 LRRcap occurring C- 32.0 31 0.00067 17.6 1.1 16 173-188 7-22 (26)
76 KOG0444 Cytoskeletal regulator 30.8 0.71 1.5E-05 43.2 -8.5 14 153-166 172-185 (1255)
77 COG4829 CatC1 Muconolactone de 30.4 10 0.00023 25.5 -1.0 34 7-40 10-45 (98)
78 PF07735 FBA_2: F-box associat 29.8 66 0.0014 20.4 2.8 32 155-186 33-69 (70)
79 PF08427 DUF1741: Domain of un 28.6 9.1 0.0002 31.5 -1.8 37 11-51 39-75 (237)
80 KOG0444 Cytoskeletal regulator 26.5 3.9 8.5E-05 38.6 -4.7 110 141-256 22-139 (1255)
81 PF06881 Elongin_A: RNA polyme 22.7 1.1E+02 0.0024 21.7 3.0 37 4-40 3-43 (109)
82 smart00579 FBD domain in FBox 22.3 2.2E+02 0.0047 18.1 4.2 19 236-254 26-44 (72)
83 PF08004 DUF1699: Protein of u 22.0 74 0.0016 23.3 2.0 22 167-188 29-50 (131)
84 smart00369 LRR_TYP Leucine-ric 21.7 44 0.00096 16.4 0.6 10 155-164 3-12 (26)
85 smart00370 LRR Leucine-rich re 21.7 44 0.00096 16.4 0.6 10 155-164 3-12 (26)
86 KOG1859 Leucine-rich repeat pr 20.7 29 0.00062 33.7 -0.4 96 152-253 185-289 (1096)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.5e-16 Score=129.92 Aligned_cols=249 Identities=24% Similarity=0.256 Sum_probs=147.1
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhcccccchhh------hccccCCceeecCccchhcccc--cCCCcccccchhhhhhh
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSYRWRY------LWRFFTGSLDFVDPYKIRRLAI--LSDPYYKCEDNYFIRVK 76 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~------lw~~~~~~l~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (285)
+..|||||+..||+.|+-+|+.+++.|||||++ +|. .++..+..+.|..-. ..+-. ..++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~----~lDl~~r~i~p~~l~~l~~rgV------~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ----TLDLTGRNIHPDVLGRLLSRGV------IVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee----eeccCCCccChhHHHHHHhCCe------EEEEcc
Confidence 468999999999999999999999999999986 577 666666644432100 00000 000000
Q ss_pred --hhhHHHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHh-CCceEEEEEecCCCCCCCceeecCcccc-CCCC
Q 023267 77 --RRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVD-KRVQRLELDFSESKTEGHELHTFSPYFK-TTSS 152 (285)
Q Consensus 77 --~~~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~-~~v~~L~l~~~~~~~~~~~~~~~p~~~~-~~~~ 152 (285)
..+-.+++..+.-.+ .+++.+.++-... .+......... ..++.+.+.... +..... ..+.
T Consensus 168 r~~~~~prlae~~~~fr--sRlq~lDLS~s~i---t~stl~~iLs~C~kLk~lSlEg~~----------LdD~I~~~iAk 232 (419)
T KOG2120|consen 168 RSFMDQPRLAEHFSPFR--SRLQHLDLSNSVI---TVSTLHGILSQCSKLKNLSLEGLR----------LDDPIVNTIAK 232 (419)
T ss_pred hhhhcCchhhhhhhhhh--hhhHHhhcchhhe---eHHHHHHHHHHHHhhhhccccccc----------cCcHHHHHHhc
Confidence 000001111111000 1233444432221 11222222222 244445444221 111110 1123
Q ss_pred CCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCC-C-----CeEEEeC
Q 023267 153 FSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPN-L-----SNLEINA 222 (285)
Q Consensus 153 ~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~-l-----~~l~i~~ 222 (285)
=.+|+.|+|+.+. |+..++.-+++.|..|.+|+|.+|...++ ..|.+-++++..|.++||.. + ..+...|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 3689999999988 99999999999999999999999976554 35566778899999999853 2 2233478
Q ss_pred CCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 223 PNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 223 p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
|+|..|+++++.. ...+-..+.|+.+.++.+. ... ....-.+...|.|..|++..+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY-~i~-p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY-DII-PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhc-CCC-hHHeeeeccCcceEEEEeccc
Confidence 9999999987653 1234467899999998633 222 233333578888888887643
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.41 E-value=2.9e-15 Score=127.34 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=135.5
Q ss_pred CCChHHHHHHHhcCChhhHhhhcccccchhhh------ccccCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267 7 KLPDDILICILSRLTIEEAARASILSYRWRYL------WRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF 80 (285)
Q Consensus 7 ~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l------w~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (285)
.||.|++..|||+|+++.+++++++|+-|..+ |. +.+..+|..+- .
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q-~idL~t~~rDv-------~-------------------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQ-HIDLFTFQRDV-------D-------------------- 125 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccce-eeehhcchhcC-------C--------------------
Confidence 59999999999999999999999999999864 55 33333333330 0
Q ss_pred HHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHH-HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEE
Q 023267 81 INLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFA-VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSL 159 (285)
Q Consensus 81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L 159 (285)
.+.|..++ .+.|..++.++++....... .+.=.++ ..+|+++|.+..+...+ +....++ ...|+.|++|
T Consensus 126 g~VV~~~~-~Rcgg~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iT-d~s~~sl------a~~C~~l~~l 195 (483)
T KOG4341|consen 126 GGVVENMI-SRCGGFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKIT-DSSLLSL------ARYCRKLRHL 195 (483)
T ss_pred CcceehHh-hhhccccccccccccccCCc--chhhHHhhhCCchhhhhhhcceecc-HHHHHHH------HHhcchhhhh
Confidence 12233333 34456788999987764321 1111122 23788888776543111 1001111 2357788888
Q ss_pred EeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC---CCCceeEEEEecCCC---------------------
Q 023267 160 RLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG---PSLKLKYLELRDLPN--------------------- 214 (285)
Q Consensus 160 ~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~---~~~~L~~L~i~~c~~--------------------- 214 (285)
.|..|. +++-.++.+..+||+|++|++++|+.+..-.|.. .+..++.+...||..
T Consensus 196 ~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 196 NLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred hhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 888855 7777777788888888888888887654422221 222233443344532
Q ss_pred -----CCeEEE-----eCCCceEEEEeccee-----eee-ecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 215 -----LSNLEI-----NAPNLVSFEFSAGEL-----IVS-FKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 215 -----l~~l~i-----~~p~L~~l~~~~~~~-----~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
+....+ .+-.|+.+.+.++.. ... ..++++|+.+-+... -.+.+..+..+..+++.|+.|++.
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c-~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC-QQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc-chhhhhhhhhhhcCChhhhhhccc
Confidence 221111 133444454443321 011 225677777777753 235556666777778888777665
Q ss_pred E
Q 023267 279 L 279 (285)
Q Consensus 279 ~ 279 (285)
=
T Consensus 355 ~ 355 (483)
T KOG4341|consen 355 E 355 (483)
T ss_pred c
Confidence 3
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.01 E-value=2.7e-10 Score=69.11 Aligned_cols=36 Identities=42% Similarity=0.662 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSYRWRYLWR 40 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~ 40 (285)
|+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999997543
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=1.7e-08 Score=61.46 Aligned_cols=36 Identities=47% Similarity=0.668 Sum_probs=30.7
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSYRWRYLWR 40 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~ 40 (285)
++.||+|++.+||++|+.+|.++++.|||+|+++..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 567999999999999999999999999999998766
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.46 E-value=9.4e-08 Score=55.90 Aligned_cols=33 Identities=45% Similarity=0.649 Sum_probs=31.4
Q ss_pred CChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267 8 LPDDILICILSRLTIEEAARASILSYRWRYLWR 40 (285)
Q Consensus 8 LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~ 40 (285)
||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998765
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=2.9e-06 Score=71.62 Aligned_cols=182 Identities=20% Similarity=0.177 Sum_probs=104.5
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCcccc----CCCCCCCccEEEeeeEEeCh
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFK----TTSSFSSLVSLRLIDVDIPE 168 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~----~~~~~~~L~~L~L~~~~i~~ 168 (285)
.+.+++++....+ ....+|+..+.+ +.+++..+.... .+...-.+|..+- .+.++|.|+.|+|+.-.|+.
T Consensus 31 s~~~l~lsgnt~G-~EAa~~i~~~L~~~~~L~~v~~sd~f---tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 31 SLTKLDLSGNTFG-TEAARAIAKVLASKKELREVNLSDMF---TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ceEEEeccCCchh-HHHHHHHHHHHhhcccceeeehHhhh---cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4677777665443 457789888776 445544443211 1111122232221 14578999999999999987
Q ss_pred hH---HHHHHhcCCccceeecccCCCcce--------------EEEeCCCCceeEEEEecCCCCCeEE--------EeCC
Q 023267 169 EV---LHYLLCYCPLLEVLTLKGAEKLIR--------------IRVSGPSLKLKYLELRDLPNLSNLE--------INAP 223 (285)
Q Consensus 169 ~~---l~~ll~~cp~Le~L~L~~c~~~~~--------------~~i~~~~~~L~~L~i~~c~~l~~l~--------i~~p 223 (285)
++ |.++++.|..|++|.|++|.--.. ..-..+.++|+.+..+.-. +..-. -..|
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcc
Confidence 66 788999999999999999952110 1112234667777655332 21111 1346
Q ss_pred CceEEEEeccee--------eeeecCCCceEEEEEEccccchh-hhHHhhhhcCCCcceEEEEEEEe
Q 023267 224 NLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 224 ~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.|+.+++..... ...+..||+|+.|+|....++.. ...+.+.+...|+|+.|.++.|-
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 677766543322 11244667777777765444322 34445555666666666665543
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.5e-06 Score=69.90 Aligned_cols=144 Identities=23% Similarity=0.197 Sum_probs=88.8
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhc-CCccceeecccCCC-cce--E-
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCY-CPLLEVLTLKGAEK-LIR--I- 195 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~-cp~Le~L~L~~c~~-~~~--~- 195 (285)
.|++++.+.++.+.+.. ..++ -+.+|..|..|+|++|....+....++.. -+.|..|+|+||.. +.. +
T Consensus 234 ~~L~~lnlsm~sG~t~n------~~~l-l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTEN------ALQL-LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred ccceeeccccccccchh------HHHH-HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 68888888877654211 1111 12467888888998888555555554443 48888888888753 221 1
Q ss_pred EEeCCCCceeEEEEecCCCCCeE----EEeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhh
Q 023267 196 RVSGPSLKLKYLELRDLPNLSNL----EINAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFS 266 (285)
Q Consensus 196 ~i~~~~~~L~~L~i~~c~~l~~l----~i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll 266 (285)
.+...||.+.+|++++|..++.- ...-|.|+++.++.+.. -+.+.+.|.|.-|++.+...+-.+.-+ .
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~---~ 383 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELL---K 383 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHH---H
Confidence 22346788888888888655431 11467888888776543 355778888888888874332223333 3
Q ss_pred cCCCcceE
Q 023267 267 SFLPQLRT 274 (285)
Q Consensus 267 ~~~~~L~~ 274 (285)
..+|+++.
T Consensus 384 e~~~~lki 391 (419)
T KOG2120|consen 384 EMLSHLKI 391 (419)
T ss_pred HhCccccc
Confidence 34555543
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=1.1e-05 Score=69.67 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=83.0
Q ss_pred CCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeEEE------
Q 023267 151 SSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNLEI------ 220 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l~i------ 220 (285)
..+++|+.|-+..+. |++..+..+..+||.||.|++.+|....+- ..+..+++|+.|+++.|.....-.+
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 356788888888887 888888888888888888888887654432 3344567788888887753322211
Q ss_pred --eCCCceEEEEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267 221 --NAPNLVSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 221 --~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L 277 (285)
..-.|+.+.+.+.... --+..|++|+.+.+.. +..+...++..+.+.+|++++..+
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~-~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID-CQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeec-hhhhhhhhhHHHHhhCccceehhh
Confidence 2344555556554431 1234688888877764 334556777888888998887654
No 9
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=2.8e-06 Score=77.43 Aligned_cols=120 Identities=24% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCCCCe-----EEEe
Q 023267 151 SSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPNLSN-----LEIN 221 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~l~~-----l~i~ 221 (285)
..|++|+.|++.++. ++|.++..+...||.||.|.+.+|..+++ ..|...++.|++|.+.+|..+.. +...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 457888999998888 88888888888899999999888876554 34455677788999988875422 2235
Q ss_pred CCCceEEEEecce---------------------eeeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267 222 APNLVSFEFSAGE---------------------LIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL 272 (285)
Q Consensus 222 ~p~L~~l~~~~~~---------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L 272 (285)
+|+|+.+.+.+.. ....+.+++.|+.+.+.... .........+.+||+|
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG--ISDLGLELSLRGCPNL 389 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh--ccCcchHHHhcCCccc
Confidence 6666665432211 12334467777777776533 2222334556777776
No 10
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.49 E-value=0.00015 Score=37.41 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=22.6
Q ss_pred CccEEEeeeEEeChh-HHHHHHhcCC
Q 023267 155 SLVSLRLIDVDIPEE-VLHYLLCYCP 179 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~-~l~~ll~~cp 179 (285)
+||+|+|.+|.|.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998777 4999999998
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.49 E-value=2e-05 Score=71.85 Aligned_cols=126 Identities=28% Similarity=0.342 Sum_probs=92.7
Q ss_pred CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccC-CCcc-----eEEEeCCCCceeEEEEecCCCCCeEEE----
Q 023267 152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGA-EKLI-----RIRVSGPSLKLKYLELRDLPNLSNLEI---- 220 (285)
Q Consensus 152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c-~~~~-----~~~i~~~~~~L~~L~i~~c~~l~~l~i---- 220 (285)
.+|+|+.|.+.++. +++.++..+...||.|++|++.+| .... ...+...+.+++.|.+.+|..+....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 48999999999997 887779999999999999999983 3221 123555667889999999875544443
Q ss_pred -eCCCceEEEEeccee------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 221 -NAPNLVSFEFSAGEL------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 221 -~~p~L~~l~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.||+|+.+.+.++.. ......+|+|++++|.. +....+..+..+..+|++++.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-CccchHHHHHHHHHhCcchhhhhhh
Confidence 489999998654442 22344689999999986 3334556677778889998887643
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.6e-05 Score=64.73 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=93.2
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe-C
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS-G 199 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~-~ 199 (285)
+++++|.++-.. +.+|.+--.-..++.||.|.|.+|-++-.++..++..||.|+.|.|..-.++..-... .
T Consensus 172 p~Le~LNls~Nr--------l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~ 243 (505)
T KOG3207|consen 172 PSLENLNLSSNR--------LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK 243 (505)
T ss_pred ccchhccccccc--------ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence 677777765332 3333322222367899999999999999999999999999999999876532211111 1
Q ss_pred CCCceeEEEEecCCCC--C--eEEEeCCCceEEEEecceee----------eeecCCCceEEEEEEcccc-chhhhHHhh
Q 023267 200 PSLKLKYLELRDLPNL--S--NLEINAPNLVSFEFSAGELI----------VSFKHVPSLVEMSIEGDYC-TYFVYTLHQ 264 (285)
Q Consensus 200 ~~~~L~~L~i~~c~~l--~--~l~i~~p~L~~l~~~~~~~~----------~~~~~~~~L~~l~l~~~~~-~~~~~~~~~ 264 (285)
-..+|+.|++++-.-+ . ......|.|+.+.+...... ......|+|+.|++..... +|. .+ .
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~--sl-~ 320 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR--SL-N 320 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc--cc-c
Confidence 1235778888765422 1 22235678888777654321 1123468888888876543 231 11 1
Q ss_pred hhcCCCcceEEEEEEEeee
Q 023267 265 FSSFLPQLRTLKLNLMAVS 283 (285)
Q Consensus 265 ll~~~~~L~~L~L~~~~~~ 283 (285)
-+...++|++|.+...|..
T Consensus 321 ~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccchhhhhhccccccc
Confidence 2355667777665555443
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=9.9e-06 Score=70.40 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=78.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCC--CcceEEE
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAE--KLIRIRV 197 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~--~~~~~~i 197 (285)
+.++++.++.+. ..++..--....||+++.|+|++--|+.=. +..|+...|+||.|+|+.-. ....-..
T Consensus 121 kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 121 KKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 567777777554 222221122457999999999988776644 77889999999999998632 1111112
Q ss_pred eCCCCceeEEEEecCC----CCCeEEEeCCCceEEEEeccee----eeeecCCCceEEEEEEccc
Q 023267 198 SGPSLKLKYLELRDLP----NLSNLEINAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 198 ~~~~~~L~~L~i~~c~----~l~~l~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~ 254 (285)
....++++.|.+.+|. ++..+....|+|+.|.+.+... .....-...|++|+|++..
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 2244579999999996 1234555678888877655421 1112224555666665443
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.27 E-value=0.00025 Score=61.10 Aligned_cols=128 Identities=17% Similarity=0.058 Sum_probs=66.7
Q ss_pred CCccEEEeeeEEeChhH---HHHHHhcCCccceeecccCCCcce--EEEe---CCCCceeEEEEecCCCCCe--------
Q 023267 154 SSLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGAEKLIR--IRVS---GPSLKLKYLELRDLPNLSN-------- 217 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c~~~~~--~~i~---~~~~~L~~L~i~~c~~l~~-------- 217 (285)
++|+.|+|.++.++++. +...+..++.|+.|++.+|.--.. ..+. ...+.|+.|.+.+|. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 56666666666665433 233345556666666666532110 0010 112357777777764 221
Q ss_pred EEEeCCCceEEEEecceeee----ee-----cCCCceEEEEEEccccch-hhhHHhhhhcCCCcceEEEEEEEee
Q 023267 218 LEINAPNLVSFEFSAGELIV----SF-----KHVPSLVEMSIEGDYCTY-FVYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 218 l~i~~p~L~~l~~~~~~~~~----~~-----~~~~~L~~l~l~~~~~~~-~~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
..-..|+|+.|.+.+....- .+ ...+.|+++++.+..+.. ....+...+..+++|+.+++++..+
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 11235677777776643210 01 123677888877655432 1234445556667777777766543
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.27 E-value=0.00042 Score=59.66 Aligned_cols=126 Identities=22% Similarity=0.150 Sum_probs=81.9
Q ss_pred CCccEEEeeeEEeChhHHHH---HHhcC-CccceeecccCCCcce--EE---EeCCCCceeEEEEecCCCCCe-----EE
Q 023267 154 SSLVSLRLIDVDIPEEVLHY---LLCYC-PLLEVLTLKGAEKLIR--IR---VSGPSLKLKYLELRDLPNLSN-----LE 219 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~---ll~~c-p~Le~L~L~~c~~~~~--~~---i~~~~~~L~~L~i~~c~~l~~-----l~ 219 (285)
++|++|++.++.+++.+... .+..+ +.|++|++.+|.-... .. .-....+|+.|.+.+|. +.. +.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence 67999999999988766543 34555 8999999999863211 01 11233468899998885 432 11
Q ss_pred ---EeCCCceEEEEeccee--------eeeecCCCceEEEEEEccccchhhhHHhhhhc----CCCcceEEEEEEEee
Q 023267 220 ---INAPNLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSS----FLPQLRTLKLNLMAV 282 (285)
Q Consensus 220 ---i~~p~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~----~~~~L~~L~L~~~~~ 282 (285)
...++|+.|.+.+... ...+..+++|+.+++++..... ..+..+.. ..++|+.|+++.+.+
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1346899999876543 1234568899999998765432 22232222 358999999987654
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.26 E-value=0.00028 Score=71.28 Aligned_cols=79 Identities=22% Similarity=0.165 Sum_probs=42.1
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEE
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEF 230 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~ 230 (285)
..+++|++|+|.++..- ..+..-+..+++|+.|++.+|..+..+.......+|+.|.+.+|..+..+.-..++|+.|.+
T Consensus 654 s~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 35667777777765411 11222345667777777777765554332223345677777777544433222334444444
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.24 E-value=6.8e-05 Score=58.62 Aligned_cols=120 Identities=25% Similarity=0.282 Sum_probs=41.2
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--E--eCCCceE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--I--NAPNLVS 227 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i--~~p~L~~ 227 (285)
++-.+++|+|.+..|+. ++.+-..+..|+.|+++++.- ..+.--...++|+.|.+.+=. +..+. + ..|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 44578888888888754 555445678889999888632 111111124578888877543 44542 2 4789999
Q ss_pred EEEecceee-----eeecCCCceEEEEEEccccchh-hhHHhhhhcCCCcceEEE
Q 023267 228 FEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 228 l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~ 276 (285)
|.+.+.... ..+..+|+|+.+++.+..+... .| -..++..+|+|+.|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeC
Confidence 988765431 2456789999999987554322 22 234567889999775
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.20 E-value=0.00019 Score=72.52 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=47.2
Q ss_pred HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEeccee---eeeecCCCceEEEEEE
Q 023267 175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIE 251 (285)
Q Consensus 175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~ 251 (285)
+.++++|+.|+|.+|..+..+......++|+.|.+++|..+..+.-..++|+.|.+.+... +..+..+++|+.+++.
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECC
Confidence 4567777777777776555433222345677777777766555443345677776655432 3345567777777776
Q ss_pred c
Q 023267 252 G 252 (285)
Q Consensus 252 ~ 252 (285)
+
T Consensus 878 ~ 878 (1153)
T PLN03210 878 G 878 (1153)
T ss_pred C
Confidence 5
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.03 E-value=0.00046 Score=68.73 Aligned_cols=147 Identities=18% Similarity=0.125 Sum_probs=88.2
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~ 198 (285)
++++.|++..+.-. ..+|..++ ..+++|++|+|++..+++.. . ....+.|++|+|.++.-...+ .+
T Consensus 93 ~~L~~L~Ls~n~~~------~~ip~~~~--~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~- 160 (968)
T PLN00113 93 PYIQTINLSNNQLS------GPIPDDIF--TTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDI- 160 (968)
T ss_pred CCCCEEECCCCccC------CcCChHHh--ccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHH-
Confidence 67777776543211 13444332 25678888888877664321 1 134688888888876432111 12
Q ss_pred CCCCceeEEEEecCCCCCeE---EEeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCc
Q 023267 199 GPSLKLKYLELRDLPNLSNL---EINAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQ 271 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~ 271 (285)
....+|+.|.++++.-...+ ....++|++|.+.+... +-.++++++|+.+++....... .+...+..+++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~ 237 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLTS 237 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC---cCChhHhcCCC
Confidence 23457888888887522222 12567888888876542 3346678899999888655322 12223467889
Q ss_pred ceEEEEEEEee
Q 023267 272 LRTLKLNLMAV 282 (285)
Q Consensus 272 L~~L~L~~~~~ 282 (285)
|+.|+++.+..
T Consensus 238 L~~L~L~~n~l 248 (968)
T PLN00113 238 LNHLDLVYNNL 248 (968)
T ss_pred CCEEECcCcee
Confidence 99999886654
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.95 E-value=0.00064 Score=67.76 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=27.6
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP 213 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~ 213 (285)
.+++|+.|+|++..+++. +......+|.|+.|++.+|...+.+.-.....+|+.|.+++|.
T Consensus 426 ~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred cCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 345555555555544332 1122335666666666665422111100112345566665553
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.89 E-value=0.00075 Score=64.07 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=86.4
Q ss_pred HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe
Q 023267 119 VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS 198 (285)
Q Consensus 119 ~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~ 198 (285)
.+.++++|++........+ ....+ ..-||+|++|.+.++.+..++|..+...+|+|..|++++++ ++++.--
T Consensus 120 sr~nL~~LdI~G~~~~s~~-W~~ki------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNG-WPKKI------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGI 191 (699)
T ss_pred HHHhhhhcCccccchhhcc-HHHHH------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHH
Confidence 3468888887643211000 00111 23589999999999999888899999999999999999984 3333222
Q ss_pred CCCCceeEEEEecCCCCCe----EE-EeCCCceEEEEeccee---e------eee-cCCCceEEEEEEccccchhhhHHh
Q 023267 199 GPSLKLKYLELRDLPNLSN----LE-INAPNLVSFEFSAGEL---I------VSF-KHVPSLVEMSIEGDYCTYFVYTLH 263 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~----l~-i~~p~L~~l~~~~~~~---~------~~~-~~~~~L~~l~l~~~~~~~~~~~~~ 263 (285)
+..++|+.|.+.+-. ++. .. ....+|+.|+++.... . +.. ..+|.|+.++.+++..+. ..+.
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le 268 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILE 268 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHH
Confidence 333334444444332 221 11 1467888888765432 1 011 137899999888766433 4444
Q ss_pred hhhcCCCcceE
Q 023267 264 QFSSFLPQLRT 274 (285)
Q Consensus 264 ~ll~~~~~L~~ 274 (285)
.++..-|+|+.
T Consensus 269 ~ll~sH~~L~~ 279 (699)
T KOG3665|consen 269 ELLNSHPNLQQ 279 (699)
T ss_pred HHHHhCccHhh
Confidence 55555555443
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.48 E-value=0.00084 Score=56.74 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCcCCCCC----hHHHHHHHhcCChhhHhhhcccccchhh
Q 023267 2 DDRISKLP----DDILICILSRLTIEEAARASILSYRWRY 37 (285)
Q Consensus 2 ~D~is~LP----d~iL~~Ils~L~~~d~~~~s~vs~rW~~ 37 (285)
.|.|+.|| |+|...|||||+..+++.|-.|||+|++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 47889999 9999999999999999999999999986
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.40 E-value=0.00084 Score=63.74 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=90.0
Q ss_pred CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce--EEEeCCCCceeEEEEecCCCCCeEEE--eCCCce
Q 023267 152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR--IRVSGPSLKLKYLELRDLPNLSNLEI--NAPNLV 226 (285)
Q Consensus 152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~i~~~~~~L~~L~i~~c~~l~~l~i--~~p~L~ 226 (285)
+-.+|++|++.+.. +..+-...+...+|.|+.|.+.+..-..+ ..+..+.|.|..|+|+++. +..+.. +.++|+
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence 44689999999977 76666888899999999999998643322 2444567899999999995 555532 456777
Q ss_pred EEEEecce-----eeeeecCCCceEEEEEEccccchh---hhHHhhhhcCCCcceEEEEEEEee
Q 023267 227 SFEFSAGE-----LIVSFKHVPSLVEMSIEGDYCTYF---VYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 227 ~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
.|...+-. .-..+-++.+|+.|+++....... ..-..+.-..+|+|+.|+.+.+.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 66654432 223455789999999986543221 222334445699999999886654
No 24
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.93 E-value=0.0052 Score=53.67 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=33.3
Q ss_pred CCCcCCCCChHHHHHHHhcCCh-hhHhhhcccccchhhhc
Q 023267 1 MDDRISKLPDDILICILSRLTI-EEAARASILSYRWRYLW 39 (285)
Q Consensus 1 ~~D~is~LPd~iL~~Ils~L~~-~d~~~~s~vs~rW~~lw 39 (285)
|.| .+.||+|+|..|..+|+. -|++|.+.||+.||..-
T Consensus 1 ~~~-Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~ 39 (373)
T PLN03215 1 MAD-WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSV 39 (373)
T ss_pred CCC-hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence 555 688999999999999984 69999999999999743
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.72 E-value=0.0033 Score=49.23 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=32.8
Q ss_pred HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeeee---e-cCCCceEEE
Q 023267 175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIVS---F-KHVPSLVEM 248 (285)
Q Consensus 175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~~---~-~~~~~L~~l 248 (285)
..++-.+++|+|.++.--.--.+.....+|+.|.++++. +.++. -..++|++|.+.+...... + ..+|+|+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 345667899999987421111233334578999999885 54443 1478999999987765321 2 358999999
Q ss_pred EEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.++....... .+ ...++.+|+|+.|+|.
T Consensus 94 ~L~~N~I~~l-~~-l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 94 YLSNNKISDL-NE-LEPLSSLPKLRVLSLE 121 (175)
T ss_dssp E-TTS---SC-CC-CGGGGG-TT--EEE-T
T ss_pred ECcCCcCCCh-HH-hHHHHcCCCcceeecc
Confidence 9987665321 12 2446789999999875
No 26
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.18 E-value=0.007 Score=50.86 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=30.8
Q ss_pred CcCCCCChHHHHHHHhc-----CChhhHhhhcccccchhhh
Q 023267 3 DRISKLPDDILICILSR-----LTIEEAARASILSYRWRYL 38 (285)
Q Consensus 3 D~is~LPd~iL~~Ils~-----L~~~d~~~~s~vs~rW~~l 38 (285)
+.|+.||||||..||.+ ++.+++.++|.|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 45789999999999975 4569999999999999853
No 27
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0027 Score=50.15 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=45.3
Q ss_pred ccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267 156 LVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSF 228 (285)
Q Consensus 156 L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l 228 (285)
++.++-+++.|..++++. +.+++.++.|.+.+|..+.+ -.+....++|+.|++++|+.++.-.+ ..++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455555566666666666 55677777777777766554 23444556677777777765554443 23555555
Q ss_pred EEe
Q 023267 229 EFS 231 (285)
Q Consensus 229 ~~~ 231 (285)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.04 E-value=0.011 Score=34.77 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCC
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~ 190 (285)
++|++|+|.+..|++ +...+..||+|+.|++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999888864 66557899999999999873
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.65 E-value=0.014 Score=36.99 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
++++|++|++++..+..-. ...+.++|+|++|++.++
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 4556666666555442211 112445566666665554
No 30
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.63 E-value=0.017 Score=29.70 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=10.4
Q ss_pred CCccEEEeeeEE-eChhHHHHH
Q 023267 154 SSLVSLRLIDVD-IPEEVLHYL 174 (285)
Q Consensus 154 ~~L~~L~L~~~~-i~~~~l~~l 174 (285)
|+|++|+|.+|. ++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 445555555554 555554443
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.53 E-value=0.0017 Score=59.08 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=35.8
Q ss_pred CCCceEEEEeccee-------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 222 APNLVSFEFSAGEL-------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 222 ~p~L~~l~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
..+|+.|++..... ...+.+++.|++|.+.+.....+. .+.+.++++||+|+|.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAFSGLEALEHLDLG 424 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhhccCcccceecCC
Confidence 45666666654433 223457899999999987764331 2335788999999886
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.018 Score=45.60 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC--CCCceeEEEEecCC
Q 023267 150 TSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG--PSLKLKYLELRDLP 213 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~--~~~~L~~L~i~~c~ 213 (285)
+..++.++.|.+.+|. ++|..++.+-...|+||.|+|++|..+++-.+.. ..++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4578899999999999 9999999988889999999999999776633332 33456666666554
No 33
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.48 E-value=0.02 Score=29.37 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=15.4
Q ss_pred CCccceeecccCCCcceE
Q 023267 178 CPLLEVLTLKGAEKLIRI 195 (285)
Q Consensus 178 cp~Le~L~L~~c~~~~~~ 195 (285)
||+|++|+|.+|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 899999999999877663
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.41 E-value=0.011 Score=37.35 Aligned_cols=54 Identities=33% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 223 PNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 223 p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
|+|++|.+.+.... -.+.++++|+.++++........ ...+..+++|+.|+++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~---~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP---PDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE---TTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC---HHHHcCCCCCCEEeCcC
Confidence 45555555544321 23455677777777654433221 12356677777776654
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.28 E-value=0.015 Score=48.24 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=58.0
Q ss_pred CceEEEEeeCCCcccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCccc----cCCCCCCCccEEEeeeEEeChh
Q 023267 96 LQQLRICYPVNSDYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYF----KTTSSFSSLVSLRLIDVDIPEE 169 (285)
Q Consensus 96 l~~l~l~~~~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~----~~~~~~~~L~~L~L~~~~i~~~ 169 (285)
+..+.++....+ .....|+...++ ++++...+. ....+...-.+|..+ ..+..||.|+..+|+.-.|+..
T Consensus 32 ~~evdLSGNtig-tEA~e~l~~~ia~~~~L~vvnfs---d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 32 LVEVDLSGNTIG-TEAMEELCNVIANVRNLRVVNFS---DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred eeEEeccCCccc-HHHHHHHHHHHhhhcceeEeehh---hhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 556666655443 456789888775 344444442 111111111122211 1245799999999999998765
Q ss_pred H---HHHHHhcCCccceeecccCC
Q 023267 170 V---LHYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 170 ~---l~~ll~~cp~Le~L~L~~c~ 190 (285)
. +..+++....|++|.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 4 78899999999999999984
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.87 E-value=0.044 Score=48.64 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG 199 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~ 199 (285)
++.+.|.+..+. .-.+|. + -++|++|.+.++. + ..+...+ .+.|+.|.+.+|..+.. +.
T Consensus 52 ~~l~~L~Is~c~-------L~sLP~-L-----P~sLtsL~Lsnc~nL--tsLP~~L--P~nLe~L~Ls~Cs~L~s--LP- 111 (426)
T PRK15386 52 RASGRLYIKDCD-------IESLPV-L-----PNELTEITIENCNNL--TTLPGSI--PEGLEKLTVCHCPEISG--LP- 111 (426)
T ss_pred cCCCEEEeCCCC-------CcccCC-C-----CCCCcEEEccCCCCc--ccCCchh--hhhhhheEccCcccccc--cc-
Confidence 678888887542 234452 1 1469999998864 2 1111112 36899999999975542 22
Q ss_pred CCCceeEEEEecCCCCCeEEEeCCCceEEEEecceee--eeec--CCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267 200 PSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELI--VSFK--HVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL 275 (285)
Q Consensus 200 ~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~--~~~~--~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 275 (285)
..|+.|.+.+ .....+.---++|+.|.+.+.... ..+. -.++|+.|.+.+..... ....++ .+|+.|
T Consensus 112 --~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~---LP~~LP---~SLk~L 182 (426)
T PRK15386 112 --ESVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII---LPEKLP---ESLQSI 182 (426)
T ss_pred --cccceEEeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc---Cccccc---ccCcEE
Confidence 3577787753 333444444567888887543211 1111 23689999998633211 111122 467777
Q ss_pred EEEE
Q 023267 276 KLNL 279 (285)
Q Consensus 276 ~L~~ 279 (285)
+++.
T Consensus 183 ~ls~ 186 (426)
T PRK15386 183 TLHI 186 (426)
T ss_pred Eecc
Confidence 7653
No 37
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=93.48 E-value=0.042 Score=50.43 Aligned_cols=145 Identities=19% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC--CCcceEEEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA--EKLIRIRVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c--~~~~~~~i~ 198 (285)
+|++++.+.... .-.+|.- .....+|+.|.|.+-.|+.-.-++ ++.-|.||.|+|+.- ..+..-...
T Consensus 102 ~nLq~v~l~~N~-------Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 102 PNLQEVNLNKNE-------LTRIPRF---GHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred Ccceeeeeccch-------hhhcccc---cccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCC
Confidence 788888876433 1233331 112346999999887765433333 455688888888753 111111112
Q ss_pred CCCCceeEEEEecCCCCCeEEE----------------------------eCCCceEEEEecceee----eeecCCCceE
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----------------------------NAPNLVSFEFSAGELI----VSFKHVPSLV 246 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----------------------------~~p~L~~l~~~~~~~~----~~~~~~~~L~ 246 (285)
+ ...+++|.+++-. ++.+.. ..|+|+.|.+.....+ ..+.+.++|+
T Consensus 171 ~-~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 171 A-KVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred C-CCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 1 2356777665432 222221 2344444444433322 1233455555
Q ss_pred EEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 247 EMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 247 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.+.+...++.-.++ ..+-.+.++++|+|....
T Consensus 249 nlklqrN~I~kL~D---G~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 249 NLKLQRNDISKLDD---GAFYGLEKMEHLNLETNR 280 (873)
T ss_pred hhhhhhcCcccccC---cceeeecccceeecccch
Confidence 55555433322211 234567788888877544
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=92.93 E-value=0.16 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=16.0
Q ss_pred ceeEEEEecCCCCCeEEEeCCCceEEEEecc
Q 023267 203 KLKYLELRDLPNLSNLEINAPNLVSFEFSAG 233 (285)
Q Consensus 203 ~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~ 233 (285)
.|+.|.+.++. +..+....|+|+.|.+++.
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN 312 (788)
T ss_pred hcCEEECcCCc-cccccccccccceeECCCC
Confidence 35555555553 4444334466777766554
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.30 E-value=0.052 Score=50.25 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=34.6
Q ss_pred CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267 2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYL 38 (285)
Q Consensus 2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l 38 (285)
.|.++.||-|+..+||++|+.+++++++++|+.|+.+
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3789999999999999999999999999999999863
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.66 E-value=0.054 Score=44.57 Aligned_cols=119 Identities=24% Similarity=0.167 Sum_probs=55.7
Q ss_pred ccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecC--C---CCCeEEEeCCCceEEEE
Q 023267 156 LVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDL--P---NLSNLEINAPNLVSFEF 230 (285)
Q Consensus 156 L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c--~---~l~~l~i~~p~L~~l~~ 230 (285)
.+.+.+.++.-....+..+....-.|+.|.+.+|...+..... ..++|+.|.++.- . .+.-+...+|+|+++.+
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 3344444333333334444445555666665555322221111 2346677766543 1 12222335688888888
Q ss_pred ecceeee--e---ecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267 231 SAGELIV--S---FKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL 275 (285)
Q Consensus 231 ~~~~~~~--~---~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 275 (285)
++..... . +...++|..+.+..+.....+.--.+++.-+|+|+-|
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYL 148 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccc
Confidence 7765431 1 2235556666666543322222223344445555544
No 41
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=90.62 E-value=0.28 Score=47.48 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.8
Q ss_pred Cccceeeccc
Q 023267 179 PLLEVLTLKG 188 (285)
Q Consensus 179 p~Le~L~L~~ 188 (285)
|.|+.|++++
T Consensus 302 ~~L~~LdLS~ 311 (788)
T PRK15387 302 PGLQELSVSD 311 (788)
T ss_pred cccceeECCC
Confidence 4455555544
No 42
>PF13013 F-box-like_2: F-box-like domain
Probab=89.99 E-value=0.18 Score=36.06 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhccccc
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSY 33 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~ 33 (285)
+.+||+||+..|+.+-...+.......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999999999988888876
No 43
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.65 E-value=0.12 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=13.6
Q ss_pred CCCccEEEeeeEEeChhHHHHH
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYL 174 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~l 174 (285)
+++|++|+|++..|++++...|
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677777777777777776654
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=84.64 E-value=0.54 Score=45.58 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=15.1
Q ss_pred CceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 243 PSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 243 ~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
++|+.|+++......... .+ .++|+.|+|+.+
T Consensus 346 ~sL~~L~Ls~N~L~~LP~---~l---p~~L~~LdLs~N 377 (754)
T PRK15370 346 PELQVLDVSKNQITVLPE---TL---PPTITTLDVSRN 377 (754)
T ss_pred CcccEEECCCCCCCcCCh---hh---cCCcCEEECCCC
Confidence 466666666544321111 11 246666666543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.32 E-value=0.2 Score=42.31 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=56.8
Q ss_pred CCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCC--cce-EEEeCCCCceeEEEEecCC---CCCeEEEeCCCce
Q 023267 154 SSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEK--LIR-IRVSGPSLKLKYLELRDLP---NLSNLEINAPNLV 226 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~--~~~-~~i~~~~~~L~~L~i~~c~---~l~~l~i~~p~L~ 226 (285)
..++-|.+-++.|...+ +..+.+.|..+++|+|.+-.- -.+ ..|-...|+++.|.++.-+ .++.+.+-..+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34556667777766555 666677777777777765311 011 1222344566666665322 1222223445778
Q ss_pred EEEEecceee-----eeecCCCceEEEEEEcc
Q 023267 227 SFEFSAGELI-----VSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 227 ~l~~~~~~~~-----~~~~~~~~L~~l~l~~~ 253 (285)
++-+.|.... ..+...|.+++++++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 8888776643 23446777788777654
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=84.29 E-value=0.57 Score=27.41 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=6.8
Q ss_pred ecCCCceEEEEEEc
Q 023267 239 FKHVPSLVEMSIEG 252 (285)
Q Consensus 239 ~~~~~~L~~l~l~~ 252 (285)
+.++++|+.+++++
T Consensus 20 l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 20 LSNLPNLETLNLSN 33 (44)
T ss_dssp GTTCTTSSEEEETS
T ss_pred HhCCCCCCEEEecC
Confidence 34455555555544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.70 E-value=0.76 Score=39.00 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=53.4
Q ss_pred CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEE-EeCCCCceeEEEEecCCCCC-----eEEEeCCC
Q 023267 152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKLKYLELRDLPNLS-----NLEINAPN 224 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~c~~l~-----~l~i~~p~ 224 (285)
.+..++.|+|.+-.+++=+ +.+|+..-|.|+.|+|+.-.--..+. ...+...|+.|.+.+.. +. ...-+.|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchh
Confidence 5678888999888888755 88899999999999998643222222 22455567788777653 22 22225677
Q ss_pred ceEEEEecc
Q 023267 225 LVSFEFSAG 233 (285)
Q Consensus 225 L~~l~~~~~ 233 (285)
+..|++++.
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777766544
No 48
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=82.22 E-value=0.36 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=19.9
Q ss_pred CCceeEEEEecCCCCCeEEE----eCCCceEEEEecce
Q 023267 201 SLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGE 234 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~ 234 (285)
.++|+.++++ |.++..+.+ ..|+|++|+++|..
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 3456666665 545555544 22678888777765
No 49
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=81.59 E-value=0.077 Score=51.19 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=16.1
Q ss_pred CCCceEEEEecceee-ee--e-cCCCceEEEEEEccc
Q 023267 222 APNLVSFEFSAGELI-VS--F-KHVPSLVEMSIEGDY 254 (285)
Q Consensus 222 ~p~L~~l~~~~~~~~-~~--~-~~~~~L~~l~l~~~~ 254 (285)
.|.|+.++++..... .. . ...|+|+.+++++..
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 455666665544331 11 1 112667777776643
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.45 E-value=3.1 Score=36.03 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH---HHHHHhcCCccceeecccCCCcce--E
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGAEKLIR--I 195 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c~~~~~--~ 195 (285)
++++++.+....-.+.+. ..+.. .+..||+|+.|+|..-.|+.++ +...+...|.|++|++++|.--.. +
T Consensus 185 ~~leevr~~qN~I~~eG~--~al~e---al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGV--TALAE---ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred cccceEEEecccccCchh--HHHHH---HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 689988886554332221 11111 2356899999999988887766 566678889999999999852211 1
Q ss_pred ----EEeCCCCceeEEEEecCC
Q 023267 196 ----RVSGPSLKLKYLELRDLP 213 (285)
Q Consensus 196 ----~i~~~~~~L~~L~i~~c~ 213 (285)
.+....|.|+.|.+.++.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHhccCCCCceeccCcch
Confidence 222335678888888774
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.06 E-value=0.55 Score=38.77 Aligned_cols=80 Identities=25% Similarity=0.205 Sum_probs=50.3
Q ss_pred CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCC--cceEEEeCCCCceeEEEEecCCCCC------eEEEeC
Q 023267 152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEK--LIRIRVSGPSLKLKYLELRDLPNLS------NLEINA 222 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~--~~~~~i~~~~~~L~~L~i~~c~~l~------~l~i~~ 222 (285)
.+|+||.|.++.-.+...+ +..++..||+|++|++++-.. +.++.=......|+.|....|+... ++..-.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4689999999877433333 777788889999999987532 2222222233446777788886332 222346
Q ss_pred CCceEEEEe
Q 023267 223 PNLVSFEFS 231 (285)
Q Consensus 223 p~L~~l~~~ 231 (285)
|+|+++.-.
T Consensus 143 ~~L~~LD~~ 151 (260)
T KOG2739|consen 143 PSLKYLDGC 151 (260)
T ss_pred hhhcccccc
Confidence 777777643
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.40 E-value=4.2 Score=32.65 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCCccEEEeeeEEeChhH--HHHHHhcCCccceeecccCC--CcceEEEeCCCCceeEEEEecCCC-----CCe-EEEe
Q 023267 152 SFSSLVSLRLIDVDIPEEV--LHYLLCYCPLLEVLTLKGAE--KLIRIRVSGPSLKLKYLELRDLPN-----LSN-LEIN 221 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~--l~~ll~~cp~Le~L~L~~c~--~~~~~~i~~~~~~L~~L~i~~c~~-----l~~-l~i~ 221 (285)
.++.|.+|.|.+-.|+.-+ +.. ..|+|..|.|.+-+ .++++.=-..+|+|++|++-+-+. -.. +.-.
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 4678888888887765422 333 34888888887632 233433334556777776654321 111 2224
Q ss_pred CCCceEEEEec
Q 023267 222 APNLVSFEFSA 232 (285)
Q Consensus 222 ~p~L~~l~~~~ 232 (285)
.|+|+.|+|.+
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 57777776643
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=73.48 E-value=2.2 Score=36.37 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc-ceE-----EEe------------------CCCCce
Q 023267 149 TTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL-IRI-----RVS------------------GPSLKL 204 (285)
Q Consensus 149 ~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~-~~~-----~i~------------------~~~~~L 204 (285)
.+..|++|+.+.++.+.- +.+..+...=|.|+.+.+.+.... ... .+. .....|
T Consensus 209 ~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred chHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 345677888887776642 445555566688888877763211 000 000 000112
Q ss_pred eEEEEecCCCCCeEE---EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 205 KYLELRDLPNLSNLE---INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 205 ~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
..+++++-. +..+. --+|+++.|.++..... -.+...++|.++++++... ..+..|=..+-|+|+|.|.
T Consensus 287 telDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L----s~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 287 TELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL----AECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchh----HhhhhhHhhhcCEeeeehh
Confidence 233333211 11111 12688888888766543 2356788888888886431 2233333455566666554
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=72.60 E-value=2.9 Score=35.70 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=10.5
Q ss_pred hhhhhHHHhHHHHHhccCC
Q 023267 75 VKRRNFINLVDPILGLLQT 93 (285)
Q Consensus 75 ~~~~~~~~~v~~~L~~~~~ 93 (285)
.++....-++.+.|...++
T Consensus 84 ~r~~~leiylq~ll~~f~~ 102 (490)
T KOG1259|consen 84 QRREQLEIYLQELLIYFRT 102 (490)
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3444455556666665554
No 55
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=72.50 E-value=2.4 Score=19.12 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.0
Q ss_pred ccceeecccCC
Q 023267 180 LLEVLTLKGAE 190 (285)
Q Consensus 180 ~Le~L~L~~c~ 190 (285)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555553
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.27 E-value=4.3 Score=32.60 Aligned_cols=60 Identities=30% Similarity=0.335 Sum_probs=40.7
Q ss_pred CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCC--Ccce--EEEeCCCCceeEEEEecC
Q 023267 152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAE--KLIR--IRVSGPSLKLKYLELRDL 212 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~--~~~~--~~i~~~~~~L~~L~i~~c 212 (285)
.+|+|+.|.|.+-.+-.-+ ++. +..||.|+.|.+.+-. .-.. ..+-...|+++.|++.+-
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 4789999999987764432 443 7789999999998732 2222 233344567888877654
No 57
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=68.73 E-value=4.2 Score=39.60 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=8.8
Q ss_pred hhhcCCCcceEEEEEE
Q 023267 264 QFSSFLPQLRTLKLNL 279 (285)
Q Consensus 264 ~ll~~~~~L~~L~L~~ 279 (285)
.+...++++..|.|..
T Consensus 409 ~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 409 HFRGEGPQPTRIIVEY 424 (754)
T ss_pred HHhhcCCCccEEEeeC
Confidence 3344456666666654
No 58
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=68.18 E-value=1.3 Score=37.91 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSYRWRYL 38 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l 38 (285)
+..+|+++++.|++|+..++++++|.+++|-+.+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~ 41 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKEL 41 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhh
Confidence 3578999999999999999999999999999864
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=66.81 E-value=6.8 Score=35.18 Aligned_cols=114 Identities=24% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCC-ccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCP-LLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEF 230 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp-~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~ 230 (285)
.|+++++|+++++.+.. +- ..| .|++|.+.+|..+..+.-.- ...|+.|.+.+|..+..+ .++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL---PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc---ccccceEEe
Confidence 46888888888875432 22 233 58999998887764432111 136888999888655433 456888887
Q ss_pred ecceeeeeecC-CCceEEEEEEccccchhhhHHhhhhcCC-CcceEEEEEEE
Q 023267 231 SAGELIVSFKH-VPSLVEMSIEGDYCTYFVYTLHQFSSFL-PQLRTLKLNLM 280 (285)
Q Consensus 231 ~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~ll~~~-~~L~~L~L~~~ 280 (285)
.+.... .+.. .++|++|.+........ ..+...+ ++|+.|.+..+
T Consensus 120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~~----~~lp~~LPsSLk~L~Is~c 166 (426)
T PRK15386 120 KGSATD-SIKNVPNGLTSLSINSYNPENQ----ARIDNLISPSLKTLSLTGC 166 (426)
T ss_pred CCCCCc-ccccCcchHhheeccccccccc----cccccccCCcccEEEecCC
Confidence 644332 1233 36778777753221110 0000111 57888888654
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=65.55 E-value=4.9 Score=29.05 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCCCCccEEEeee-EE-eChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eC
Q 023267 151 SSFSSLVSLRLID-VD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NA 222 (285)
Q Consensus 151 ~~~~~L~~L~L~~-~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~ 222 (285)
..|++|+.+.+.. +. +.+. .+.+|+.|+.+.+..- +..+.-. ..+..++.+.+.+. +..+.- .+
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~----~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~ 80 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGEN----AFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNC 80 (129)
T ss_dssp TT-TT--EEEETST--EE-TT----TTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-
T ss_pred hCCCCCCEEEECCCeeEeChh----hccccccccccccccc--ccccceeeeeccccccccccccc--cccccccccccc
Confidence 3567888888763 22 4333 3567888998888752 3332211 13345777777542 333332 36
Q ss_pred CCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcce
Q 023267 223 PNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLR 273 (285)
Q Consensus 223 p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~ 273 (285)
++|+.+.+.+... ...+.++ .|+++.+.. ...... ...+.+|++||
T Consensus 81 ~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~---~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIE---ENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS-------GGG------
T ss_pred ccccccccCccccEEchhhhcCC-CceEEEECC-CccEEC---CccccccccCC
Confidence 7888888754422 2235566 888877764 222211 12345666664
No 61
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.25 E-value=3.9 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=17.9
Q ss_pred CCccEEEeeeEEeChhHHHHHH
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLL 175 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll 175 (285)
++|++|+|++..|++++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5799999999999988876554
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=64.75 E-value=4 Score=40.50 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCCCccEEEeeeEEe-ChhHHHHHHhcCCccceeecccCCCcceEE-EeCCCCceeEEEEecCCCCCeEEEeCCCceEE
Q 023267 151 SSFSSLVSLRLIDVDI-PEEVLHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKLKYLELRDLPNLSNLEINAPNLVSF 228 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l 228 (285)
..+|.|++|-+.+..- -...-..++..-|.|+.|+|++|.....+. --+..-+|++|++.++. +..+...-.+|+.|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 4677888888877531 001112335567999999999876544421 11223457777777764 44444433333333
Q ss_pred ---EEeccee----eeeecCCCceEEEEEEccc
Q 023267 229 ---EFSAGEL----IVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 229 ---~~~~~~~----~~~~~~~~~L~~l~l~~~~ 254 (285)
.+..... +-....+++|+.+.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 3222111 1122236777777776544
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=60.91 E-value=8.3 Score=32.58 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=17.8
Q ss_pred CCCCccEEEeeeEEeChhHHHHHH
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLL 175 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll 175 (285)
.+..++.++|++-.|+.++.+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~ 51 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELC 51 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHH
Confidence 356788888888888888766543
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=57.34 E-value=9.5 Score=18.28 Aligned_cols=9 Identities=56% Similarity=0.774 Sum_probs=5.5
Q ss_pred cceeecccC
Q 023267 181 LEVLTLKGA 189 (285)
Q Consensus 181 Le~L~L~~c 189 (285)
||+|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 566666665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.99 E-value=0.39 Score=40.31 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=52.6
Q ss_pred HhcCCccc---eeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee-----eeecCCCc
Q 023267 175 LCYCPLLE---VLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI-----VSFKHVPS 244 (285)
Q Consensus 175 l~~cp~Le---~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~-----~~~~~~~~ 244 (285)
-+.|..|+ .|+.-+| ++.++.|-..-+.|+.|.++-- .+..+. .+|.+|+.|-+...... ..+.++|+
T Consensus 12 raK~sdl~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 12 RAKCSDLENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhHHHHhhhhcccCC-CccHHHHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 45565444 3333333 3566665544344555555411 122222 25667777655433321 23568899
Q ss_pred eEEEEEEccccch---hhhHHhhhhcCCCcceEEE
Q 023267 245 LVEMSIEGDYCTY---FVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 245 L~~l~l~~~~~~~---~~~~~~~ll~~~~~L~~L~ 276 (285)
|+.|.|....+.. .+|- ...++.+|||+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYR-RKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHH-HHHHHHcccchhcc
Confidence 9999996432221 1222 35678889998875
No 66
>PLN03150 hypothetical protein; Provisional
Probab=54.47 E-value=9.3 Score=36.49 Aligned_cols=36 Identities=28% Similarity=0.201 Sum_probs=14.6
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
+++|+.|+|++..+.+. +...+..++.|+.|+|.++
T Consensus 441 L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 441 LRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred CCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCC
Confidence 34444444444433221 1112344444444444443
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=50.35 E-value=3.3 Score=36.81 Aligned_cols=34 Identities=32% Similarity=0.261 Sum_probs=21.4
Q ss_pred CccEEEeeeEEeChhHHHHHHhcCCccceeecccCC
Q 023267 155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~ 190 (285)
+|+.|++.+-.+.+ +..-+..+|.|+.|.+.++.
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCch
Confidence 67777776655533 21235667888888887764
No 68
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=50.03 E-value=10 Score=31.63 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHhcCC-hhhHhhhcccccch------hhhccccCCceeecCccchh
Q 023267 5 ISKLPDDILICILSRLT-IEEAARASILSYRW------RYLWRFFTGSLDFVDPYKIR 55 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~-~~d~~~~s~vs~rW------~~lw~~~~~~l~f~~~~~~~ 55 (285)
+.+||.+++..|+.+|+ -+|+..++++-..- +++|+ ..-..+|....+..
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk-kLcqfHF~erQi~~ 258 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK-KLCQFHFNERQIHT 258 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH-HHHHHHhhHHHHHH
Confidence 67899999999999999 68999998876444 24566 34446676665543
No 69
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=46.26 E-value=2.6 Score=32.91 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.3
Q ss_pred eeecCCCceEEEEEE
Q 023267 237 VSFKHVPSLVEMSIE 251 (285)
Q Consensus 237 ~~~~~~~~L~~l~l~ 251 (285)
.++.++|.|+.++++
T Consensus 73 ~~issl~klr~lnvg 87 (264)
T KOG0617|consen 73 TSISSLPKLRILNVG 87 (264)
T ss_pred hhhhhchhhhheecc
Confidence 344445555555544
No 70
>PLN03150 hypothetical protein; Provisional
Probab=41.18 E-value=16 Score=34.94 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 222 APNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 222 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.++|+.|.+.+... +..++.+++|+.|+|+....... +-..+..+++|+.|+|+.
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~---iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS---IPESLGQLTSLRILNLNG 499 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC---CchHHhcCCCCCEEECcC
Confidence 45556665554432 12344556666666655433211 111234555566665543
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=38.71 E-value=15 Score=32.72 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 222 APNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 222 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.|+|+.+.+++... .-.+.++..++++.|........ -.+++.++.+|+.|+|.-..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v---~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV---SSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH---HHHhhhccccceeeeecCCe
Confidence 36666666665543 12355666667766665443222 13567889999999887443
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=36.83 E-value=5.4 Score=35.88 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=15.0
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeeccc
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKG 188 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~ 188 (285)
+.+|+.|.+.+-.+.. +..++..|++|+.|+|++
T Consensus 94 ~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSF 127 (414)
T ss_pred ccceeeeeccccchhh--cccchhhhhcchheeccc
Confidence 4445555554443311 222244455555555544
No 73
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=35.93 E-value=16 Score=36.37 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=48.7
Q ss_pred CCCCCCCccEEEeeeEEeChhHHHH-----HHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCC
Q 023267 149 TTSSFSSLVSLRLIDVDIPEEVLHY-----LLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNL 215 (285)
Q Consensus 149 ~~~~~~~L~~L~L~~~~i~~~~l~~-----ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l 215 (285)
....+++|+.|.+.++.+.+..... ....+|+|..+.+.+|.+..+.......++|+.|.+.+|...
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 3567899999999999876432211 111478888888888988877776655678999999988644
No 74
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=32.98 E-value=70 Score=19.06 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=23.8
Q ss_pred CceEEEEEEccccchh-hhHHhhhhcCCCcceEEEEEE
Q 023267 243 PSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 243 ~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.+|+.+.+.+...... ..-+.-++.+.+.|+.+.+++
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 6677777765443322 334456678888888888764
No 75
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=31.95 E-value=31 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHhcCCccceeeccc
Q 023267 173 YLLCYCPLLEVLTLKG 188 (285)
Q Consensus 173 ~ll~~cp~Le~L~L~~ 188 (285)
.++..+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 4677889999998754
No 76
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=30.83 E-value=0.71 Score=43.24 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=6.9
Q ss_pred CCCccEEEeeeEEe
Q 023267 153 FSSLVSLRLIDVDI 166 (285)
Q Consensus 153 ~~~L~~L~L~~~~i 166 (285)
+.+|++|.|++-.+
T Consensus 172 L~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPL 185 (1255)
T ss_pred HhhhhhhhcCCChh
Confidence 34555555555443
No 77
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.38 E-value=10 Score=25.50 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=26.4
Q ss_pred CCChHHHHHHHhcCChhhHhhhccccc--chhhhcc
Q 023267 7 KLPDDILICILSRLTIEEAARASILSY--RWRYLWR 40 (285)
Q Consensus 7 ~LPd~iL~~Ils~L~~~d~~~~s~vs~--rW~~lw~ 40 (285)
.+||+.=.....++.++|.+++..+-+ .|+++||
T Consensus 10 ~~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR 45 (98)
T COG4829 10 RVPDSMDADAVERVRAREKARSRELQAQGKLLRLWR 45 (98)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHh
Confidence 467777777778888888888876654 5899999
No 78
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=29.76 E-value=66 Score=20.39 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=20.7
Q ss_pred CccEEEeeeEEeChhHHHH-----HHhcCCccceeec
Q 023267 155 SLVSLRLIDVDIPEEVLHY-----LLCYCPLLEVLTL 186 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~l~~-----ll~~cp~Le~L~L 186 (285)
+-+.+.+....++.+++.. +-+..|.||.|.+
T Consensus 33 nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 33 NCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 4456666666677777543 3446688888765
No 79
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=28.56 E-value=9.1 Score=31.55 Aligned_cols=37 Identities=32% Similarity=0.646 Sum_probs=25.0
Q ss_pred HHHHHHHhcCChhhHhhhcccccchhhhccccCCceeecCc
Q 023267 11 DILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDP 51 (285)
Q Consensus 11 ~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~~~~~~l~f~~~ 51 (285)
.|+++|++++. +..+| +.-.|.++|+.....+.|-..
T Consensus 39 ~ii~Rll~y~~-~~~~R---L~Y~W~eLW~aLlsLl~Fl~~ 75 (237)
T PF08427_consen 39 GIIHRLLCYLK-RSRIR---LEYHWSELWRALLSLLRFLTT 75 (237)
T ss_pred HHHHHHHHHHH-hcCcc---ccccHHHHHHHHHHHHHHHHh
Confidence 36777888775 44444 689999999955555555433
No 80
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=26.50 E-value=3.9 Score=38.58 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred eecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe--E
Q 023267 141 HTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN--L 218 (285)
Q Consensus 141 ~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~--l 218 (285)
-.||..+- .+..++-|.|.+..+ ..+-.=+++|..||+|.+..-.-.+--.--+..++|+.+.+..-. ++. |
T Consensus 22 ~~FP~~v~---qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~-LKnsGi 95 (1255)
T KOG0444|consen 22 DRFPHDVE---QMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN-LKNSGI 95 (1255)
T ss_pred CcCchhHH---HhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc-cccCCC
Confidence 34565432 345566666655443 223344788999999998753211100001122345544443221 211 1
Q ss_pred E---EeCCCceEEEEeccee---eeeecCCCceEEEEEEccccc
Q 023267 219 E---INAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCT 256 (285)
Q Consensus 219 ~---i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~ 256 (285)
. .....|..++++.... +-.+..+.++--|+|+...+.
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc
Confidence 1 1234455566655433 345666777888888876553
No 81
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=22.70 E-value=1.1e+02 Score=21.70 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=30.9
Q ss_pred cCCCCChHHHHHHHhcCChhhHhhhcccccchh----hhcc
Q 023267 4 RISKLPDDILICILSRLTIEEAARASILSYRWR----YLWR 40 (285)
Q Consensus 4 ~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~----~lw~ 40 (285)
-++.+|-+++..||.++++.++.+.-.-|..-. .||.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~tdeLW~ 43 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIEDTDELWK 43 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchhhHHHHH
Confidence 378999999999999999999999888775553 3666
No 82
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=22.26 E-value=2.2e+02 Score=18.06 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=13.4
Q ss_pred eeeecCCCceEEEEEEccc
Q 023267 236 IVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 236 ~~~~~~~~~L~~l~l~~~~ 254 (285)
.+.+.+++.|+++.+....
T Consensus 26 ~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 26 KYFLENAPCLKKLTISVET 44 (72)
T ss_pred HHHHhcchhheEEEEEeec
Confidence 3456788888888887543
No 83
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=22.05 E-value=74 Score=23.29 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.7
Q ss_pred ChhHHHHHHhcCCccceeeccc
Q 023267 167 PEEVLHYLLCYCPLLEVLTLKG 188 (285)
Q Consensus 167 ~~~~l~~ll~~cp~Le~L~L~~ 188 (285)
++.++-.++..||+|+.+.+-.
T Consensus 29 SN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 29 SNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred cchHHHHHHHhCCCCeEEeCCh
Confidence 4466788999999999988854
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=21.67 E-value=44 Score=16.39 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=4.4
Q ss_pred CccEEEeeeE
Q 023267 155 SLVSLRLIDV 164 (285)
Q Consensus 155 ~L~~L~L~~~ 164 (285)
+|++|+|.+.
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00369 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=21.67 E-value=44 Score=16.39 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=4.4
Q ss_pred CccEEEeeeE
Q 023267 155 SLVSLRLIDV 164 (285)
Q Consensus 155 ~L~~L~L~~~ 164 (285)
+|++|+|.+.
T Consensus 3 ~L~~L~L~~N 12 (26)
T smart00370 3 NLRELDLSNN 12 (26)
T ss_pred CCCEEECCCC
Confidence 3444444443
No 86
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=20.74 E-value=29 Score=33.74 Aligned_cols=96 Identities=26% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeeccc-C-CCcceEEEeCCCCceeEEEEecCC--CCCeEEEeCCCceE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKG-A-EKLIRIRVSGPSLKLKYLELRDLP--NLSNLEINAPNLVS 227 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~-c-~~~~~~~i~~~~~~L~~L~i~~c~--~l~~l~i~~p~L~~ 227 (285)
-+|.|+.|+|++-.|.+-+ .+..||.|++|+|++ | ..+..+...+. +|..|.+.+-. .+.+|+ ...+|+.
T Consensus 185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc--~L~~L~lrnN~l~tL~gie-~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGC--KLQLLNLRNNALTTLRGIE-NLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhh--hheeeeecccHHHhhhhHH-hhhhhhc
Confidence 4678999999988876644 467799999999986 3 23333332222 24555555432 111111 2344555
Q ss_pred EEEeccee-----eeeecCCCceEEEEEEcc
Q 023267 228 FEFSAGEL-----IVSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 228 l~~~~~~~-----~~~~~~~~~L~~l~l~~~ 253 (285)
|+++.... -..+.....|.+|.|.+.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 55443321 011223456666666654
Done!