Query 023267
Match_columns 285
No_of_seqs 131 out of 1446
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 4.5E-19 1.5E-23 164.1 11.2 151 2-190 3-167 (594)
2 2ast_B S-phase kinase-associat 99.7 7.7E-19 2.6E-23 151.4 4.9 232 3-280 7-257 (336)
3 3ogk_B Coronatine-insensitive 99.7 1.1E-16 3.9E-21 147.9 12.9 34 7-40 15-49 (592)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.7E-10 5.9E-15 71.0 3.3 37 3-39 7-43 (53)
5 3e4g_A ATP synthase subunit S, 98.5 9.7E-09 3.3E-13 79.2 -1.3 103 154-273 61-170 (176)
6 3e4g_A ATP synthase subunit S, 98.5 5.7E-08 2E-12 74.9 2.6 88 122-218 62-155 (176)
7 2ast_B S-phase kinase-associat 98.3 1.6E-08 5.4E-13 86.5 -3.5 125 152-278 140-280 (336)
8 3l2o_B F-box only protein 4; s 98.3 8.8E-08 3E-12 79.0 1.0 33 5-37 5-37 (312)
9 2e31_A FBS1, F-box only protei 98.3 3.2E-07 1.1E-11 76.4 3.8 36 3-38 49-85 (297)
10 2ell_A Acidic leucine-rich nuc 98.2 1.4E-07 4.7E-12 72.4 -0.0 126 153-280 23-157 (168)
11 4fcg_A Uncharacterized protein 98.2 8.9E-07 3.1E-11 75.6 3.6 166 94-279 81-262 (328)
12 3ogk_B Coronatine-insensitive 98.2 4.2E-07 1.4E-11 83.7 1.6 128 153-282 377-525 (592)
13 3v7d_B Cell division control p 98.1 5.9E-07 2E-11 79.8 1.2 37 2-38 12-48 (464)
14 2je0_A Acidic leucine-rich nuc 98.1 7.3E-08 2.5E-12 72.5 -4.6 123 153-277 16-147 (149)
15 4ezg_A Putative uncharacterize 98.1 1.5E-06 5.3E-11 68.4 2.7 142 121-282 44-193 (197)
16 2p1m_B Transport inhibitor res 98.0 3.1E-07 1.1E-11 84.5 -2.6 37 242-280 455-491 (594)
17 2ra8_A Uncharacterized protein 98.0 1.8E-06 6.3E-11 74.7 2.1 77 152-231 137-227 (362)
18 4fcg_A Uncharacterized protein 98.0 1.6E-06 5.6E-11 74.0 1.6 121 153-278 182-309 (328)
19 2ovr_B FBW7, F-BOX/WD repeat p 98.0 4.1E-06 1.4E-10 74.1 3.8 36 2-37 16-51 (445)
20 4ezg_A Putative uncharacterize 97.9 1.1E-06 3.9E-11 69.2 -0.8 121 152-282 42-171 (197)
21 1h6t_A Internalin B; cell adhe 97.9 9.7E-06 3.3E-10 67.9 4.5 141 121-282 68-212 (291)
22 1a9n_A U2A', U2A'; complex (nu 97.9 2.1E-06 7.1E-11 66.4 0.2 124 152-279 17-149 (176)
23 1p22_A F-BOX/WD-repeat protein 97.9 2.3E-06 7.7E-11 75.6 0.3 36 2-37 8-47 (435)
24 1xeu_A Internalin C; cellular 97.8 6.1E-06 2.1E-10 68.1 2.5 140 121-282 41-184 (263)
25 1m9s_A Internalin B; cell inva 97.8 3.3E-06 1.1E-10 78.1 0.3 141 121-282 65-209 (605)
26 4fmz_A Internalin; leucine ric 97.8 1.9E-06 6.6E-11 73.8 -1.3 35 152-189 197-231 (347)
27 3o53_A Protein LRIM1, AGAP0063 97.8 1.9E-05 6.4E-10 66.9 4.8 154 109-281 20-180 (317)
28 2z66_A Variable lymphocyte rec 97.8 2.9E-06 1E-10 71.4 -0.6 75 202-280 126-209 (306)
29 1h6u_A Internalin H; cell adhe 97.8 4.6E-06 1.6E-10 70.5 0.6 140 121-281 63-206 (308)
30 1m9s_A Internalin B; cell inva 97.7 5.3E-06 1.8E-10 76.7 0.9 139 95-254 66-208 (605)
31 3oja_A Leucine-rich immune mol 97.7 9.9E-06 3.4E-10 73.0 2.5 12 268-279 189-200 (487)
32 3zyi_A Leucine-rich repeat-con 97.7 6.4E-06 2.2E-10 73.4 1.2 60 152-212 145-206 (452)
33 2z80_A TOLL-like receptor 2, v 97.7 5.5E-05 1.9E-09 64.9 6.9 148 121-281 76-233 (353)
34 3o53_A Protein LRIM1, AGAP0063 97.7 2.3E-05 8E-10 66.4 4.4 173 79-281 21-202 (317)
35 1h6t_A Internalin B; cell adhe 97.7 5.8E-06 2E-10 69.3 0.3 140 121-281 46-189 (291)
36 4fmz_A Internalin; leucine ric 97.7 7E-06 2.4E-10 70.3 0.4 122 151-280 107-253 (347)
37 3zyj_A Leucine-rich repeat-con 97.7 6.6E-06 2.2E-10 73.1 0.1 54 222-278 230-287 (440)
38 2z81_A CD282 antigen, TOLL-lik 97.7 1.1E-05 3.8E-10 73.4 1.6 62 151-213 358-421 (549)
39 3oja_A Leucine-rich immune mol 97.6 2.5E-05 8.6E-10 70.4 3.4 142 121-281 34-180 (487)
40 1h6u_A Internalin H; cell adhe 97.6 2.5E-05 8.6E-10 65.9 3.1 162 95-282 64-229 (308)
41 4glp_A Monocyte differentiatio 97.6 6.5E-06 2.2E-10 69.6 -0.6 89 95-190 65-156 (310)
42 3rgz_A Protein brassinosteroid 97.6 2.1E-05 7.1E-10 74.9 2.4 101 151-252 148-256 (768)
43 3zyj_A Leucine-rich repeat-con 97.6 2.1E-05 7.1E-10 69.8 2.2 146 121-280 112-265 (440)
44 2ca6_A RAN GTPase-activating p 97.6 5.3E-06 1.8E-10 72.3 -1.7 156 121-282 94-286 (386)
45 1ozn_A Reticulon 4 receptor; N 97.6 6.8E-06 2.3E-10 68.4 -1.1 146 121-281 56-212 (285)
46 2ca6_A RAN GTPase-activating p 97.5 1.3E-05 4.4E-10 69.9 -0.2 155 121-282 32-228 (386)
47 3vq2_A TLR4, TOLL-like recepto 97.5 5.4E-05 1.9E-09 69.8 3.9 97 150-252 303-408 (606)
48 3rgz_A Protein brassinosteroid 97.5 3.4E-05 1.2E-09 73.4 2.5 127 150-281 219-354 (768)
49 2z81_A CD282 antigen, TOLL-lik 97.5 0.00016 5.4E-09 65.8 6.8 146 121-279 50-205 (549)
50 3rfs_A Internalin B, repeat mo 97.5 1.3E-05 4.5E-10 66.3 -0.4 142 121-279 63-214 (272)
51 3bz5_A Internalin-J, INLJ; leu 97.5 3.1E-05 1.1E-09 69.2 2.0 115 152-278 125-241 (457)
52 3zyi_A Leucine-rich repeat-con 97.5 3.2E-05 1.1E-09 68.8 2.1 124 150-279 167-299 (452)
53 3un9_A NLR family member X1; l 97.5 4E-06 1.4E-10 72.9 -3.8 38 153-190 125-166 (372)
54 2z66_A Variable lymphocyte rec 97.5 1.3E-05 4.4E-10 67.4 -0.6 52 202-254 175-234 (306)
55 1wwl_A Monocyte differentiatio 97.5 8.3E-06 2.9E-10 69.0 -1.9 152 120-281 94-264 (312)
56 2o6q_A Variable lymphocyte rec 97.4 2.6E-05 9E-10 64.4 0.9 121 152-278 83-213 (270)
57 2z63_A TOLL-like receptor 4, v 97.4 1.4E-05 4.7E-10 73.1 -0.9 127 151-280 344-504 (570)
58 2z62_A TOLL-like receptor 4, v 97.4 2.3E-05 8E-10 64.8 0.2 102 151-255 49-161 (276)
59 1wwl_A Monocyte differentiatio 97.4 1.9E-05 6.7E-10 66.7 -0.5 172 94-281 95-285 (312)
60 2id5_A Lingo-1, leucine rich r 97.4 0.00015 5.3E-09 64.8 5.3 125 151-280 149-306 (477)
61 3rfs_A Internalin B, repeat mo 97.4 1.7E-05 5.7E-10 65.7 -1.0 100 151-253 106-215 (272)
62 2id5_A Lingo-1, leucine rich r 97.4 7.9E-05 2.7E-09 66.6 3.3 124 151-279 77-209 (477)
63 1o6v_A Internalin A; bacterial 97.4 6.2E-05 2.1E-09 67.2 2.6 120 152-280 241-385 (466)
64 2z80_A TOLL-like receptor 2, v 97.4 7.3E-05 2.5E-09 64.2 2.9 146 121-281 52-209 (353)
65 1o6v_A Internalin A; bacterial 97.4 7.7E-05 2.6E-09 66.6 3.1 140 121-281 68-210 (466)
66 1ozn_A Reticulon 4 receptor; N 97.4 5.8E-05 2E-09 62.7 2.1 145 121-279 80-234 (285)
67 3t6q_A CD180 antigen; protein- 97.4 3.6E-05 1.2E-09 71.0 0.7 39 151-190 298-336 (606)
68 2xwt_C Thyrotropin receptor; s 97.3 0.00011 3.7E-09 59.4 3.4 145 121-280 31-189 (239)
69 3goz_A Leucine-rich repeat-con 97.3 4.1E-05 1.4E-09 66.1 0.9 11 121-131 80-90 (362)
70 3bz5_A Internalin-J, INLJ; leu 97.3 6.2E-05 2.1E-09 67.2 2.0 117 152-280 104-222 (457)
71 2xwt_C Thyrotropin receptor; s 97.3 0.00012 4.1E-09 59.2 3.3 171 94-280 31-215 (239)
72 1xeu_A Internalin C; cellular 97.3 3.3E-05 1.1E-09 63.7 -0.2 120 152-281 39-161 (263)
73 3o6n_A APL1; leucine-rich repe 97.3 0.00022 7.4E-09 62.0 4.8 55 223-280 226-282 (390)
74 1xku_A Decorin; proteoglycan, 97.3 3.9E-05 1.3E-09 65.2 0.0 121 152-279 143-272 (330)
75 2o6q_A Variable lymphocyte rec 97.3 2.3E-05 7.9E-10 64.7 -1.4 145 121-280 37-191 (270)
76 1xku_A Decorin; proteoglycan, 97.3 8.9E-05 3E-09 63.0 2.2 124 153-281 120-251 (330)
77 3goz_A Leucine-rich repeat-con 97.2 3.3E-05 1.1E-09 66.7 -0.9 182 95-282 23-237 (362)
78 3j0a_A TOLL-like receptor 5; m 97.2 9.8E-05 3.3E-09 71.0 2.3 147 121-281 24-185 (844)
79 1z7x_W Ribonuclease inhibitor; 97.2 2.6E-05 9E-10 69.3 -1.7 179 95-282 4-211 (461)
80 2ra8_A Uncharacterized protein 97.2 0.00012 4.2E-09 63.2 2.3 35 153-187 192-227 (362)
81 2z7x_B TOLL-like receptor 1, v 97.2 0.00012 4.2E-09 66.1 2.4 125 151-279 345-477 (520)
82 3v47_A TOLL-like receptor 5B a 97.2 4.7E-05 1.6E-09 67.6 -0.4 103 151-255 51-166 (455)
83 2o6s_A Variable lymphocyte rec 97.2 5.5E-05 1.9E-09 59.8 -0.1 98 152-252 50-157 (208)
84 3o6n_A APL1; leucine-rich repe 97.2 8.6E-05 3E-09 64.6 1.1 116 153-279 225-348 (390)
85 1ds9_A Outer arm dynein; leuci 97.2 5.7E-06 2E-10 65.1 -5.9 99 152-276 68-180 (198)
86 1z7x_W Ribonuclease inhibitor; 97.2 1.7E-05 5.7E-10 70.6 -3.6 35 155-189 200-237 (461)
87 4glp_A Monocyte differentiatio 97.2 8.2E-06 2.8E-10 68.9 -5.5 126 153-280 90-234 (310)
88 3m19_A Variable lymphocyte rec 97.2 5.7E-05 1.9E-09 61.6 -0.3 100 152-254 81-190 (251)
89 1p9a_G Platelet glycoprotein I 97.1 5.8E-05 2E-09 63.1 -0.4 120 151-278 74-203 (290)
90 1ogq_A PGIP-2, polygalacturona 97.1 0.00018 6.3E-09 60.7 2.7 148 121-281 101-279 (313)
91 2z63_A TOLL-like receptor 4, v 97.1 0.0004 1.4E-08 63.3 5.1 123 152-281 323-456 (570)
92 2ell_A Acidic leucine-rich nuc 97.1 2.6E-05 8.9E-10 59.5 -2.7 98 153-254 48-158 (168)
93 1p9a_G Platelet glycoprotein I 97.1 0.00019 6.6E-09 59.9 2.3 123 151-280 52-182 (290)
94 3oja_B Anopheles plasmodium-re 97.1 0.00044 1.5E-08 63.8 4.9 54 223-279 232-287 (597)
95 4g8a_A TOLL-like receptor 4; l 97.1 0.00013 4.5E-09 67.2 1.3 102 151-255 73-185 (635)
96 3v47_A TOLL-like receptor 5B a 97.0 0.00015 5E-09 64.4 1.3 122 153-280 274-405 (455)
97 1ogq_A PGIP-2, polygalacturona 97.0 0.00019 6.5E-09 60.6 2.0 127 94-233 50-184 (313)
98 3g06_A SSPH2 (leucine-rich rep 97.0 0.00022 7.5E-09 66.1 2.4 74 202-280 221-294 (622)
99 3g06_A SSPH2 (leucine-rich rep 97.0 0.00044 1.5E-08 64.1 4.3 52 202-254 141-192 (622)
100 2z7x_B TOLL-like receptor 1, v 97.0 0.001 3.5E-08 60.0 6.7 129 151-281 217-385 (520)
101 3vq2_A TLR4, TOLL-like recepto 97.0 0.00023 7.9E-09 65.5 2.3 119 150-278 281-407 (606)
102 2xot_A Amphoterin-induced prot 97.0 9.7E-05 3.3E-09 63.7 -0.2 101 152-255 62-175 (361)
103 2v70_A SLIT-2, SLIT homolog 2 97.0 7.4E-05 2.5E-09 59.8 -0.9 100 152-253 55-163 (220)
104 3a79_B TLR6, VLRB.59, TOLL-lik 97.0 0.00031 1.1E-08 64.2 2.8 124 152-279 375-506 (562)
105 3un9_A NLR family member X1; l 97.0 3.3E-05 1.1E-09 67.1 -3.5 160 117-282 68-251 (372)
106 3j0a_A TOLL-like receptor 5; m 97.0 0.00026 8.8E-09 68.1 2.3 149 94-255 24-186 (844)
107 3m19_A Variable lymphocyte rec 96.9 6.6E-05 2.3E-09 61.2 -1.8 126 150-281 55-190 (251)
108 3t6q_A CD180 antigen; protein- 96.9 0.00014 4.7E-09 67.1 -0.1 38 152-189 323-360 (606)
109 3e6j_A Variable lymphocyte rec 96.9 0.00014 4.8E-09 58.5 -0.1 101 151-254 61-170 (229)
110 2z62_A TOLL-like receptor 4, v 96.8 0.00012 4.2E-09 60.4 -1.0 145 121-281 52-211 (276)
111 3a79_B TLR6, VLRB.59, TOLL-lik 96.8 0.00031 1E-08 64.2 1.5 125 151-281 350-484 (562)
112 3oja_B Anopheles plasmodium-re 96.8 0.00027 9.1E-09 65.2 0.5 115 154-279 232-354 (597)
113 2v9t_B SLIT homolog 2 protein 96.7 0.00022 7.4E-09 57.0 -0.3 100 151-253 53-162 (220)
114 1ziw_A TOLL-like receptor 3; i 96.7 0.00033 1.1E-08 65.5 0.7 12 267-278 581-592 (680)
115 1dce_A Protein (RAB geranylger 96.7 0.0001 3.5E-09 67.6 -2.8 56 222-277 507-567 (567)
116 4eco_A Uncharacterized protein 96.7 0.00064 2.2E-08 63.2 2.5 126 152-280 431-576 (636)
117 1ziw_A TOLL-like receptor 3; i 96.6 0.00037 1.3E-08 65.1 0.7 99 152-253 71-181 (680)
118 1io0_A Tropomodulin; LRR prote 96.6 5E-05 1.7E-09 59.1 -4.5 39 152-190 34-76 (185)
119 1a9n_A U2A', U2A'; complex (nu 96.6 0.0015 5E-08 50.0 3.6 101 176-280 16-123 (176)
120 3cvr_A Invasion plasmid antige 96.5 0.0013 4.6E-08 60.2 3.7 49 202-254 140-191 (571)
121 4ecn_A Leucine-rich repeat pro 96.5 0.00057 2E-08 65.8 0.9 126 153-281 672-817 (876)
122 4eco_A Uncharacterized protein 96.5 0.00081 2.8E-08 62.5 1.7 83 121-213 249-341 (636)
123 2o6s_A Variable lymphocyte rec 96.4 0.00027 9.3E-09 55.7 -1.9 35 154-189 28-62 (208)
124 4ecn_A Leucine-rich repeat pro 96.3 0.0012 3.9E-08 63.7 1.5 60 121-189 491-558 (876)
125 2je0_A Acidic leucine-rich nuc 96.2 0.0011 3.7E-08 49.1 1.0 101 177-280 15-123 (149)
126 2ft3_A Biglycan; proteoglycan, 96.2 0.00017 5.9E-09 61.3 -4.0 53 222-278 216-272 (332)
127 4g8a_A TOLL-like receptor 4; l 96.1 0.0018 6.3E-08 59.5 2.2 119 155-278 53-181 (635)
128 1jl5_A Outer protein YOPM; leu 95.8 0.002 6.7E-08 57.4 0.6 52 202-254 195-248 (454)
129 1jl5_A Outer protein YOPM; leu 95.7 0.0044 1.5E-07 55.1 2.6 33 154-189 215-247 (454)
130 2ft3_A Biglycan; proteoglycan, 95.7 0.00092 3.1E-08 56.7 -1.9 37 152-189 76-112 (332)
131 3cvr_A Invasion plasmid antige 95.6 0.0069 2.4E-07 55.5 3.6 110 155-279 121-239 (571)
132 2v9t_B SLIT homolog 2 protein 95.5 0.0022 7.6E-08 51.0 -0.2 119 154-278 32-160 (220)
133 1w8a_A SLIT protein; signaling 95.3 0.0037 1.3E-07 48.5 0.6 99 154-254 29-137 (192)
134 3e6j_A Variable lymphocyte rec 95.2 0.0032 1.1E-07 50.4 -0.2 119 154-278 40-167 (229)
135 3sb4_A Hypothetical leucine ri 95.2 0.031 1.1E-06 47.2 5.9 116 154-276 202-327 (329)
136 3sb4_A Hypothetical leucine ri 95.1 0.02 6.8E-07 48.3 4.7 85 95-189 26-134 (329)
137 1ds9_A Outer arm dynein; leuci 95.1 0.00039 1.3E-08 54.4 -5.7 103 152-280 46-150 (198)
138 2v70_A SLIT-2, SLIT homolog 2 95.1 0.0027 9.1E-08 50.6 -0.9 119 155-278 33-161 (220)
139 2xot_A Amphoterin-induced prot 95.1 0.003 1E-07 54.3 -0.7 37 152-189 86-122 (361)
140 2o6r_A Variable lymphocyte rec 94.7 0.005 1.7E-07 47.0 -0.3 100 153-255 27-136 (177)
141 4b8c_D Glucose-repressible alc 94.5 0.0036 1.2E-07 59.1 -1.8 101 151-256 221-329 (727)
142 2wfh_A SLIT homolog 2 protein 93.9 0.014 4.9E-07 45.3 0.8 98 153-254 30-137 (193)
143 2wfh_A SLIT homolog 2 protein 93.8 0.0083 2.8E-07 46.6 -0.7 102 121-235 31-138 (193)
144 2o6r_A Variable lymphocyte rec 93.7 0.016 5.4E-07 44.1 0.8 97 178-279 27-133 (177)
145 4b8c_D Glucose-repressible alc 93.4 0.0084 2.9E-07 56.6 -1.6 77 152-233 245-326 (727)
146 4ay9_X Follicle-stimulating ho 93.1 0.042 1.4E-06 46.7 2.6 62 152-213 52-115 (350)
147 1w8a_A SLIT protein; signaling 92.8 0.041 1.4E-06 42.5 1.9 97 178-279 28-135 (192)
148 4fdw_A Leucine rich hypothetic 92.6 0.06 2E-06 46.9 2.8 12 151-162 177-188 (401)
149 4ay9_X Follicle-stimulating ho 92.5 0.074 2.5E-06 45.2 3.3 172 95-281 31-213 (350)
150 1dce_A Protein (RAB geranylger 89.7 0.16 5.5E-06 46.3 2.7 75 202-280 463-543 (567)
151 4gt6_A Cell surface protein; l 87.2 0.31 1E-05 42.1 2.7 54 221-280 332-388 (394)
152 4fdw_A Leucine rich hypothetic 86.2 0.38 1.3E-05 41.8 2.8 30 155-188 158-189 (401)
153 3rw6_A Nuclear RNA export fact 84.9 0.083 2.8E-06 43.3 -2.0 38 152-189 168-206 (267)
154 3g39_A Variable lymphocyte rec 84.3 0.2 7E-06 37.6 0.1 76 178-255 29-114 (170)
155 2r9u_A Variable lymphocyte rec 83.8 0.26 8.8E-06 37.3 0.5 76 178-255 32-117 (174)
156 1io0_A Tropomodulin; LRR prote 83.2 0.58 2E-05 35.7 2.3 39 152-190 63-104 (185)
157 1pgv_A TMD-1, tropomodulin TMD 80.6 0.22 7.4E-06 38.8 -1.0 117 152-281 39-168 (197)
158 4fs7_A Uncharacterized protein 78.4 0.92 3.1E-05 39.0 2.1 111 152-275 274-393 (394)
159 4fs7_A Uncharacterized protein 74.9 2.2 7.6E-05 36.6 3.6 54 221-278 318-374 (394)
160 4gt6_A Cell surface protein; l 74.7 1.8 6E-05 37.2 2.9 53 222-278 310-365 (394)
161 2r9u_A Variable lymphocyte rec 71.0 1.1 3.9E-05 33.6 0.7 75 202-280 33-115 (174)
162 2ifg_A High affinity nerve gro 70.6 2.6 8.8E-05 35.3 3.0 60 151-212 28-90 (347)
163 3g39_A Variable lymphocyte rec 70.6 1.1 3.8E-05 33.4 0.6 75 202-280 30-112 (170)
164 4h09_A Hypothetical leucine ri 70.1 1.7 5.9E-05 36.9 1.8 30 222-251 285-318 (379)
165 2ifg_A High affinity nerve gro 70.1 1.2 4.2E-05 37.3 0.8 79 175-255 27-115 (347)
166 3rw6_A Nuclear RNA export fact 63.4 1.7 5.8E-05 35.4 0.3 33 244-276 221-257 (267)
167 1pgv_A TMD-1, tropomodulin TMD 47.4 7.4 0.00025 30.0 1.6 34 155-188 71-107 (197)
168 4h09_A Hypothetical leucine ri 38.7 15 0.00052 30.9 2.4 52 222-277 262-317 (379)
169 2kwv_A RAD30 homolog B, DNA po 32.2 25 0.00086 19.8 1.7 17 3-19 19-35 (48)
170 2lh0_A Histone chaperone RTT10 21.8 42 0.0014 20.9 1.5 18 1-18 4-22 (70)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=4.5e-19 Score=164.08 Aligned_cols=151 Identities=13% Similarity=0.206 Sum_probs=90.3
Q ss_pred CCcCCCCChHHHHHHHhcCC-hhhHhhhcccccchhhhccccCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267 2 DDRISKLPDDILICILSRLT-IEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF 80 (285)
Q Consensus 2 ~D~is~LPd~iL~~Ils~L~-~~d~~~~s~vs~rW~~lw~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (285)
+|+++.||||||.+||+||+ .+|+++++.|||||+++.......+++...+..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~-------------------------- 56 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV-------------------------- 56 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------------------------
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------------------------
Confidence 49999999999999999999 999999999999999873312334444332100
Q ss_pred HHhHHHHHhccCCCCCceEEEEeeCCC----------cccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCcccc
Q 023267 81 INLVDPILGLLQTKSLQQLRICYPVNS----------DYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFK 148 (285)
Q Consensus 81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~----------~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~ 148 (285)
.....+... +.++++.+...... ...+..|+..... +++++|.+..+.-. ...+..+
T Consensus 57 --~~~~~~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------~~~~~~l- 125 (594)
T 2p1m_B 57 --SPATVIRRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT------DDCLELI- 125 (594)
T ss_dssp --CHHHHHHHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC------HHHHHHH-
T ss_pred --CHHHHHhhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc------HHHHHHH-
Confidence 001122222 24777887764311 0345567776654 68888888744211 0000111
Q ss_pred CCCCCCCccEEEeeeE-EeChhHHHHHHhcCCccceeecccCC
Q 023267 149 TTSSFSSLVSLRLIDV-DIPEEVLHYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 149 ~~~~~~~L~~L~L~~~-~i~~~~l~~ll~~cp~Le~L~L~~c~ 190 (285)
...|++|++|+|.++ .+++.++..+..+||+|++|+|.+|.
T Consensus 126 -~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 126 -AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp -HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred -HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 013678888888877 47777777777788888888887764
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=7.7e-19 Score=151.35 Aligned_cols=232 Identities=19% Similarity=0.209 Sum_probs=140.0
Q ss_pred CcCCCCChHHHHHHHhcCChhhHhhhcccccchhhhccc--cCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267 3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRF--FTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF 80 (285)
Q Consensus 3 D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~~--~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (285)
..++.||||++.+||+||+.+|+++++.|||+|+++... ....+++....+.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~-------------------------- 60 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-------------------------- 60 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--------------------------
Confidence 357999999999999999999999999999999987320 1225665554211
Q ss_pred HHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEE
Q 023267 81 INLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLR 160 (285)
Q Consensus 81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~ 160 (285)
...+.+.+. +.++.+.+........ ... ....++++++++..+.-. ...+|.. ...+++|++|+
T Consensus 61 ~~~~~~~~~----~~l~~L~l~~n~l~~~-~~~---~~~~~~L~~L~L~~~~l~-----~~~~~~~---~~~~~~L~~L~ 124 (336)
T 2ast_B 61 PDVTGRLLS----QGVIAFRCPRSFMDQP-LAE---HFSPFRVQHMDLSNSVIE-----VSTLHGI---LSQCSKLQNLS 124 (336)
T ss_dssp HHHHHHHHH----TTCSEEECTTCEECSC-CCS---CCCCBCCCEEECTTCEEC-----HHHHHHH---HTTBCCCSEEE
T ss_pred HHHHHhhhh----ccceEEEcCCcccccc-chh---hccCCCCCEEEccCCCcC-----HHHHHHH---HhhCCCCCEEe
Confidence 111222211 1345555432111000 000 001257777776533200 0002221 34678889999
Q ss_pred eeeEEeChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeE-----EEeCC-CceEEEEe
Q 023267 161 LIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNL-----EINAP-NLVSFEFS 231 (285)
Q Consensus 161 L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l-----~i~~p-~L~~l~~~ 231 (285)
|.++.+++..... ++.||+|++|+|.+|..++.. .+-...++|+.|.+.+|..+... ....| +|++|.+.
T Consensus 125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 8888887766554 456889999999888655431 11223567888999888445532 12577 89999887
Q ss_pred cce--e-----eeeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 232 AGE--L-----IVSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 232 ~~~--~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+.. . ...+..+++|+.+++++.. ... .. ...+..+++|+.|+|+.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~-~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--DC-FQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--GG-GGGGGGCTTCCEEECTTC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH--HH-HHHHhCCCCCCEeeCCCC
Confidence 763 1 2234568899999988654 221 12 223467789998888754
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.1e-16 Score=147.92 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCChHHHHHHHhcC-ChhhHhhhcccccchhhhcc
Q 023267 7 KLPDDILICILSRL-TIEEAARASILSYRWRYLWR 40 (285)
Q Consensus 7 ~LPd~iL~~Ils~L-~~~d~~~~s~vs~rW~~lw~ 40 (285)
.||||+|.+||+|| +.+|+++++.|||+|++++.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 89999999999999 89999999999999999865
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.01 E-value=1.7e-10 Score=71.03 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.2
Q ss_pred CcCCCCChHHHHHHHhcCChhhHhhhcccccchhhhc
Q 023267 3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLW 39 (285)
Q Consensus 3 D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw 39 (285)
+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999753
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=9.7e-09 Score=79.22 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=68.4
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE---eCC---CCceeEEEEecCCCCCeEEEeCCCceE
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV---SGP---SLKLKYLELRDLPNLSNLEINAPNLVS 227 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i---~~~---~~~L~~L~i~~c~~l~~l~i~~p~L~~ 227 (285)
..|++|+|+++.+++.++..+ .+|++|++|+|.+|..+++..+ ... +++|++|++++|..++.-.+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------ 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH------
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH------
Confidence 468999999999999888875 7899999999999987776433 221 346888888888765443331
Q ss_pred EEEecceeeeeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcce
Q 023267 228 FEFSAGELIVSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLR 273 (285)
Q Consensus 228 l~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~ 273 (285)
.+..+++|+.|+|.+.. .+........+-..+|+++
T Consensus 134 ----------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 134 ----------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp ----------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred ----------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 13456777777777532 1222223445555667665
No 6
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=5.7e-08 Score=74.89 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=66.4
Q ss_pred CceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhc---CCccceeecccCCCcceEEE
Q 023267 122 RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCY---CPLLEVLTLKGAEKLIRIRV 197 (285)
Q Consensus 122 ~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~---cp~Le~L~L~~c~~~~~~~i 197 (285)
.+++|++..+.-. + ..+....+|++|++|+|++|. |+|.++..|... |+.||+|+|++|..+++..+
T Consensus 62 ~L~~LDLs~~~It--d-------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSCIM--S-------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCCCC--G-------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCCcc--H-------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 5788887755311 1 112223579999999999997 999999998763 89999999999998877332
Q ss_pred e--CCCCceeEEEEecCCCCCeE
Q 023267 198 S--GPSLKLKYLELRDLPNLSNL 218 (285)
Q Consensus 198 ~--~~~~~L~~L~i~~c~~l~~l 218 (285)
. +.+++|++|.+.+|+.++..
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 2 24688999999999877653
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.34 E-value=1.6e-08 Score=86.53 Aligned_cols=125 Identities=27% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCCCccEEEeeeE-EeChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCC-ceeEEEEecCC-CCCe-----EEE
Q 023267 152 SFSSLVSLRLIDV-DIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSL-KLKYLELRDLP-NLSN-----LEI 220 (285)
Q Consensus 152 ~~~~L~~L~L~~~-~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~-~L~~L~i~~c~-~l~~-----l~i 220 (285)
.+++|++|+|+++ .+++.++..++..||+|++|++.+|..+... .+-...+ +|+.|.+.+|. .+.. +..
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 4677777777777 4776667777777777777777777444321 1112334 67777777774 2321 112
Q ss_pred eCCCceEEEEecce-e----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 221 NAPNLVSFEFSAGE-L----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 221 ~~p~L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.+|+|++|.+.+.. . ...+..+++|+.++++... ...+..+ ..+..+++|+.|+++
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETL-LELGEIPTLKTLQVF 280 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGG-GGGGGCTTCCEEECT
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHH-HHHhcCCCCCEEecc
Confidence 46777777776543 1 1234566777777776543 1222222 234557777777664
No 8
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.34 E-value=8.8e-08 Score=79.03 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHhcCChhhHhhhcccccchhh
Q 023267 5 ISKLPDDILICILSRLTIEEAARASILSYRWRY 37 (285)
Q Consensus 5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~ 37 (285)
++.||+||+.+|||||+++|+++++.|||+||.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999996
No 9
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.31 E-value=3.2e-07 Score=76.40 Aligned_cols=36 Identities=25% Similarity=0.636 Sum_probs=33.7
Q ss_pred CcCCCCChHHHHHHHhcCChhhHh-hhcccccchhhh
Q 023267 3 DRISKLPDDILICILSRLTIEEAA-RASILSYRWRYL 38 (285)
Q Consensus 3 D~is~LPd~iL~~Ils~L~~~d~~-~~s~vs~rW~~l 38 (285)
..+..||+|+|.+||++||+++++ +++.|||+|+.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 367899999999999999999999 999999999975
No 10
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.23 E-value=1.4e-07 Score=72.42 Aligned_cols=126 Identities=23% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-EE---EeCCCceEE
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-LE---INAPNLVSF 228 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-l~---i~~p~L~~l 228 (285)
.++|++|+|.+..+++..+...+..+++|+.|++.+|. +..+..-...++|+.|.++++. +.. +. -..|+|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence 46677777777766544444445667777777777764 2222112234567777777765 333 21 136788888
Q ss_pred EEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 229 EFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 229 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
.+.+.... ..+..+++|+.+++++.............+..+++|+.|+++..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 87765431 24567899999999876543322211245688999999887653
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.17 E-value=8.9e-07 Score=75.65 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267 94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY 173 (285)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ 173 (285)
..++.+.+....... +...+.. -++++.|.+..+. ...+|..+ ..+++|++|+|++..++ .+..
T Consensus 81 ~~l~~L~L~~n~l~~--lp~~l~~--l~~L~~L~L~~n~-------l~~lp~~~---~~l~~L~~L~Ls~n~l~--~lp~ 144 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ--FPDQAFR--LSHLQHMTIDAAG-------LMELPDTM---QQFAGLETLTLARNPLR--ALPA 144 (328)
T ss_dssp TTCCEEEEESSCCSS--CCSCGGG--GTTCSEEEEESSC-------CCCCCSCG---GGGTTCSEEEEESCCCC--CCCG
T ss_pred cceeEEEccCCCchh--cChhhhh--CCCCCEEECCCCC-------ccchhHHH---hccCCCCEEECCCCccc--cCcH
Confidence 456777776543321 1111111 2577777776433 12345433 35788888888887765 2333
Q ss_pred HHhcCCccceeecccCCCcceEE--Ee--------CCCCceeEEEEecCCCCCeEE---EeCCCceEEEEeccee---ee
Q 023267 174 LLCYCPLLEVLTLKGAEKLIRIR--VS--------GPSLKLKYLELRDLPNLSNLE---INAPNLVSFEFSAGEL---IV 237 (285)
Q Consensus 174 ll~~cp~Le~L~L~~c~~~~~~~--i~--------~~~~~L~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~---~~ 237 (285)
-+..++.|+.|+|.+|...+.+. +. ...++|+.|.+.++. +..+. -..++|++|.+.+... +.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 46778888888888875443321 10 114568888888774 44332 1467888888876543 22
Q ss_pred eecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 238 SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 238 ~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.+..+++|+.+++++..... .+...+..+++|+.|+|+.
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALR---NYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCC---BCCCCTTCCCCCCEEECTT
T ss_pred hhccCCCCCEEECcCCcchh---hhHHHhcCCCCCCEEECCC
Confidence 45678888888887644321 1222356788888888764
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.16 E-value=4.2e-07 Score=83.69 Aligned_cols=128 Identities=17% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeeccc---CCCcceE-------EEeCCCCceeEEEEecCCC-CCe----
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKG---AEKLIRI-------RVSGPSLKLKYLELRDLPN-LSN---- 217 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~---c~~~~~~-------~i~~~~~~L~~L~i~~c~~-l~~---- 217 (285)
|++|++|.+....+++..+..+...||+|++|++.+ |+.++.. .+...+++|+.|.+++|.+ +..
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 566666666444466666666555666666666653 3333221 0111245677777766542 111
Q ss_pred -EEEeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267 218 -LEINAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 218 -l~i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
+.-.+|+|++|.+.+... ...+.++++|++++|.+..+ ....+..++..+++|+.|+|+.+.+
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHhcCccCeeECcCCcC
Confidence 111367888888765533 22345678888888887553 3345555666788888888876553
No 13
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.10 E-value=5.9e-07 Score=79.82 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267 2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYL 38 (285)
Q Consensus 2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l 38 (285)
.|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999864
No 14
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.07 E-value=7.3e-08 Score=72.46 Aligned_cols=123 Identities=27% Similarity=0.194 Sum_probs=72.9
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-EE---EeCCCceEE
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-LE---INAPNLVSF 228 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-l~---i~~p~L~~l 228 (285)
.++|++|++.+..++++.+...+..+++|+.|++.++. +..+..-...++|+.|.++++. +.. +. -..|+|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEE
Confidence 35677777776666533344445666777777776653 2222111233466777777664 332 21 136778888
Q ss_pred EEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267 229 EFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 229 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L 277 (285)
.+.+.... ..+..+++|+.+++++........-....+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77665431 34677899999999876543322211245678899998865
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.05 E-value=1.5e-06 Score=68.40 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=92.7
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcc-eEEEeC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLI-RIRVSG 199 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~i~~ 199 (285)
++++++.+....- -.+| ....+++|++|++.+..+++-. -+..+|+|++|++.++.-.. ....-+
T Consensus 44 ~~L~~L~l~~n~i-------~~l~----~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINV-------TDLT----GIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HTCCEEEEESSCC-------SCCT----TGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred CCccEEeccCCCc-------cChH----HHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhc
Confidence 5788888864321 2233 2346789999999988654432 36678999999998864321 112123
Q ss_pred CCCceeEEEEecCCCCCe--EE--EeCCCceEEEEecce-e--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267 200 PSLKLKYLELRDLPNLSN--LE--INAPNLVSFEFSAGE-L--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL 272 (285)
Q Consensus 200 ~~~~L~~L~i~~c~~l~~--l~--i~~p~L~~l~~~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L 272 (285)
..++|+.|.++++. +.. .. ...|+|+.|.+.+.. . ...+..+++|+.++++........ .+..+++|
T Consensus 110 ~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L 183 (197)
T 4ezg_A 110 GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-----GIEDFPKL 183 (197)
T ss_dssp TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-----TGGGCSSC
T ss_pred CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-----HhccCCCC
Confidence 45678899988875 333 11 146889999887764 2 124677899999999876543211 35788999
Q ss_pred eEEEEEEEee
Q 023267 273 RTLKLNLMAV 282 (285)
Q Consensus 273 ~~L~L~~~~~ 282 (285)
+.|+++...+
T Consensus 184 ~~L~l~~N~i 193 (197)
T 4ezg_A 184 NQLYAFSQTI 193 (197)
T ss_dssp CEEEECBC--
T ss_pred CEEEeeCccc
Confidence 9999876554
No 16
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.01 E-value=3.1e-07 Score=84.53 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=19.3
Q ss_pred CCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 242 VPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 242 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+++|+.++|+.... .+..+..++..+++|+.|+|+.+
T Consensus 455 ~~~L~~L~L~~~~i--~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 455 AKKMEMLSVAFAGD--SDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTCCEEEEESCCS--SHHHHHHHHHHCTTCCEEEEESC
T ss_pred chhccEeeccCCCC--cHHHHHHHHhcCCCcCEEECcCC
Confidence 45555555554332 22334444455666666666654
No 17
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=1.8e-06 Score=74.68 Aligned_cols=77 Identities=27% Similarity=0.304 Sum_probs=45.8
Q ss_pred CCCCccEEEeeeEEeC--------hhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-----E
Q 023267 152 SFSSLVSLRLIDVDIP--------EEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-----L 218 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~--------~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-----l 218 (285)
.+|+|+.|.+..+.+. ..++..++..+|.||+|.|.++.+..-..+. .++|+.|.+..|. +.. +
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG-LPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB-CCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC-CChHHHHHH
Confidence 4678888887664321 1236677888888888888776432211122 3567777777664 211 1
Q ss_pred E-EeCCCceEEEEe
Q 023267 219 E-INAPNLVSFEFS 231 (285)
Q Consensus 219 ~-i~~p~L~~l~~~ 231 (285)
. ...|+|++|.++
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 1 145777777764
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.98 E-value=1.6e-06 Score=74.01 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=66.7
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE---eCCCceEEE
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI---NAPNLVSFE 229 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~l~ 229 (285)
+++|++|+|++..++ .+..-+..++.|++|+|.++.-..-...-...++|+.|.+.+|.....+.- ..++|++|.
T Consensus 182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 667777777776655 222235667777777777664221100011235677777777653333321 356777777
Q ss_pred Eeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 230 FSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 230 ~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
+.+... +..+.++++|+.++|++..... .+-..+..+++++.+.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGGGSCTTCEEECC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchh---hccHHHhhccCceEEeCC
Confidence 765321 2335567777777777643211 112234566667766553
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.95 E-value=4.1e-06 Score=74.05 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=34.6
Q ss_pred CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhh
Q 023267 2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRY 37 (285)
Q Consensus 2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~ 37 (285)
.|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~ 51 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI 51 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence 489999999999999999999999999999999986
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.89 E-value=1.1e-06 Score=69.15 Aligned_cols=121 Identities=15% Similarity=0.222 Sum_probs=87.6
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe--EE--EeCCCceE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN--LE--INAPNLVS 227 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~--l~--i~~p~L~~ 227 (285)
.+++|++|++++..+++ +. -+..+++|++|++.+| .+..+..-...++|+.|.+.++. +.. .. -..|+|++
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCE
Confidence 46899999999988764 22 2778999999999998 34443222345789999999885 332 11 15799999
Q ss_pred EEEecceee----eeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267 228 FEFSAGELI----VSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
|.+.+.... ..+..+++|++++++... .... ..+..+++|+.|+++.+.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-----~~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-----MPLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-----GGGGGCSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-----HhhcCCCCCCEEECCCCCC
Confidence 999876542 346789999999998754 3222 1367899999999876543
No 21
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.87 E-value=9.7e-06 Score=67.93 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=94.6
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.|.+..+.- -.++. ...+++|++|+|++..+++ +.. +..++.|++|++.++.- ..+.--..
T Consensus 68 ~~L~~L~L~~n~l-------~~~~~----l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i-~~~~~l~~ 132 (291)
T 1h6t_A 68 PNVTKLFLNGNKL-------TDIKP----LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGI-SDINGLVH 132 (291)
T ss_dssp TTCCEEECCSSCC-------CCCGG----GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCC-CCCGGGGG
T ss_pred CCCCEEEccCCcc-------CCCcc----cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcC-CCChhhcC
Confidence 5777777654321 11222 4568899999998888765 222 67889999999988742 22211123
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.++|+.|.++++. +..+. -..++|+.|.+.+.... ..+..+++|+.++++....... . -+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l----~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL----R-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC----G-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC----h-hhccCCCCCEEE
Confidence 4678899998885 44442 14689999998776531 1277899999999987665332 1 257899999999
Q ss_pred EEEEee
Q 023267 277 LNLMAV 282 (285)
Q Consensus 277 L~~~~~ 282 (285)
++...+
T Consensus 207 l~~n~i 212 (291)
T 1h6t_A 207 LFSQEC 212 (291)
T ss_dssp EEEEEE
T ss_pred CcCCcc
Confidence 987654
No 22
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.87 E-value=2.1e-06 Score=66.38 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=78.0
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE----EeCCCceE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE----INAPNLVS 227 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~ 227 (285)
.+++|+.|+|++..++. +..+...+|.|+.|+++++. +..+..-...++|+.|.++++. +..+. -..|+|++
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence 45678888888777653 23344445688888888763 3333222234578888888775 55553 24688888
Q ss_pred EEEeccee---ee--eecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 228 FEFSAGEL---IV--SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 228 l~~~~~~~---~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
|.+.+... +. .+..+++|+.+++++.............+..+++|+.|+++.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 88876543 11 456788999999987654322222123467788888887764
No 23
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.86 E-value=2.3e-06 Score=75.62 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCcCCCCChH----HHHHHHhcCChhhHhhhcccccchhh
Q 023267 2 DDRISKLPDD----ILICILSRLTIEEAARASILSYRWRY 37 (285)
Q Consensus 2 ~D~is~LPd~----iL~~Ils~L~~~d~~~~s~vs~rW~~ 37 (285)
.|.++.||+| |+.+||+||+++|++++++|||+|++
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4888999999 99999999999999999999999994
No 24
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=6.1e-06 Score=68.13 Aligned_cols=140 Identities=19% Similarity=0.152 Sum_probs=96.8
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.+.+..+. .-.+| ....+++|++|+|++..+++-. . +..++.|+.|++.++.--.-..+..
T Consensus 41 ~~L~~L~l~~n~-------i~~l~----~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 41 SGVQNFNGDNSN-------IQSLA----GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp TTCSEEECTTSC-------CCCCT----TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred CcCcEEECcCCC-------cccch----HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-
Confidence 688888776432 12233 2346899999999998876533 2 7889999999999874211111112
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.+|+.|.++++. +..+. ...++|+.|.+.+.... ..+..+++|+.++++....... ..+..+++|+.|+
T Consensus 106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWID 178 (263)
T ss_dssp -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCEEE
T ss_pred -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-----HHhccCCCCCEEe
Confidence 679999999885 55442 15688999998776532 2466789999999987665332 4467899999999
Q ss_pred EEEEee
Q 023267 277 LNLMAV 282 (285)
Q Consensus 277 L~~~~~ 282 (285)
++....
T Consensus 179 l~~N~~ 184 (263)
T 1xeu_A 179 LTGQKC 184 (263)
T ss_dssp EEEEEE
T ss_pred CCCCcc
Confidence 987654
No 25
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.79 E-value=3.3e-06 Score=78.14 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=92.9
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.|.+..+.- -.++. ...+++|+.|+|++..+++-. -+..++.|+.|+|.++.- ..+.--..
T Consensus 65 ~~L~~L~Ls~N~l-------~~~~~----l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l-~~l~~l~~ 129 (605)
T 1m9s_A 65 PNVTKLFLNGNKL-------TDIKP----LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGI-SDINGLVH 129 (605)
T ss_dssp TTCCEEECTTSCC-------CCCGG----GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCC-CCCGGGGG
T ss_pred CCCCEEEeeCCCC-------CCChh----hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCC-CCCccccC
Confidence 5777777653321 11222 346788888888888776532 367788899999888742 22111123
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.++|+.|.+++|. +..+. -..++|+.|.+.+.... ..+..+++|+.|+|+...+... .-+..+++|+.|+
T Consensus 130 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 130 LPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE 203 (605)
T ss_dssp CTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-----GGGTTCTTCSEEE
T ss_pred CCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-----hHHccCCCCCEEE
Confidence 4678889988885 54442 14689999998876541 1277899999999987654332 2367889999999
Q ss_pred EEEEee
Q 023267 277 LNLMAV 282 (285)
Q Consensus 277 L~~~~~ 282 (285)
|+...+
T Consensus 204 L~~N~l 209 (605)
T 1m9s_A 204 LFSQEC 209 (605)
T ss_dssp CCSEEE
T ss_pred ccCCcC
Confidence 886543
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.78 E-value=1.9e-06 Score=73.81 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=16.6
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
.+++|+.|++.+..+++... +..++.|++|++.+|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN 231 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred CCCccceeecccCCCCCCch---hhcCCcCCEEEccCC
Confidence 34555555555544433221 344555555555544
No 27
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.78 E-value=1.9e-05 Score=66.93 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeec
Q 023267 109 YDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTL 186 (285)
Q Consensus 109 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L 186 (285)
..+...+..... +++++|.+..+.- -.++... ...+++|++|+|++..+++.. . +..++.|++|++
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~L 87 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPL-------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDL 87 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCC-------CCCCHHH--HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEEC
T ss_pred cchhhhHHHHhccCCCCCEEECcCCcc-------CcCCHHH--hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEEC
Confidence 345555555443 5888888764431 1222211 246899999999987764321 1 678999999999
Q ss_pred ccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhH
Q 023267 187 KGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYT 261 (285)
Q Consensus 187 ~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~ 261 (285)
.++. +..+. ..++|+.|.+.++. +..+.. ..++|++|.+.+... ...+..+++|+.++++...... ..
T Consensus 88 s~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~ 160 (317)
T 3o53_A 88 NNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VN 160 (317)
T ss_dssp CSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EE
T ss_pred cCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--cc
Confidence 9874 22222 22679999999886 666654 468999999987654 2345678999999998765433 22
Q ss_pred HhhhhcCCCcceEEEEEEEe
Q 023267 262 LHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 262 ~~~ll~~~~~L~~L~L~~~~ 281 (285)
...+...+++|+.|+|+...
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSC
T ss_pred HHHHhhccCcCCEEECCCCc
Confidence 33445678999999987543
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.76 E-value=2.9e-06 Score=71.44 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=41.2
Q ss_pred CceeEEEEecCCCCCeEE----EeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267 202 LKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL 272 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L 272 (285)
++|+.|.+.++. +..+. -..++|++|.+.+... +..+..+++|+.++++....... ....+..+++|
T Consensus 126 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L 201 (306)
T 2z66_A 126 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSL 201 (306)
T ss_dssp TTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTC
T ss_pred cCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc---CHHHhcCCCCC
Confidence 345566655553 22111 1246777777665432 23455677888888776543221 11234667788
Q ss_pred eEEEEEEE
Q 023267 273 RTLKLNLM 280 (285)
Q Consensus 273 ~~L~L~~~ 280 (285)
+.|+|+..
T Consensus 202 ~~L~L~~N 209 (306)
T 2z66_A 202 QVLNMSHN 209 (306)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 88877643
No 29
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.76 E-value=4.6e-06 Score=70.53 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=91.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.|.+..+.- -.++. ...+++|++|+|++..+++-. -+..++.|++|++.++.- ..+.--..
T Consensus 63 ~~L~~L~L~~n~i-------~~~~~----~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l-~~~~~l~~ 127 (308)
T 1h6u_A 63 NNLIGLELKDNQI-------TDLAP----LKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQI-TDVTPLAG 127 (308)
T ss_dssp TTCCEEECCSSCC-------CCCGG----GTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSCC-CCCGGGTT
T ss_pred CCCCEEEccCCcC-------CCChh----HccCCCCCEEEccCCcCCCch---hhcCCCCCCEEECCCCCC-CCchhhcC
Confidence 5777777654321 12222 356788899988888876532 266788899999888742 22111234
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.++|+.|.+.++. +..+. -..++|+.|.+.+.... ..+..+++|+.++++......... +..+++|+.|+
T Consensus 128 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~ 201 (308)
T 1h6u_A 128 LSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASLPNLIEVH 201 (308)
T ss_dssp CTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEE
T ss_pred CCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEE
Confidence 4678888888875 44332 25688999988776432 126788999999998765433211 57889999998
Q ss_pred EEEEe
Q 023267 277 LNLMA 281 (285)
Q Consensus 277 L~~~~ 281 (285)
|+...
T Consensus 202 L~~N~ 206 (308)
T 1h6u_A 202 LKNNQ 206 (308)
T ss_dssp CTTSC
T ss_pred ccCCc
Confidence 87543
No 30
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.75 E-value=5.3e-06 Score=76.73 Aligned_cols=139 Identities=22% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHH
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYL 174 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l 174 (285)
.++.|.++...... +.. ....++++.|.+..+.-. .+| .+..+++|+.|+|++..+.+- . -
T Consensus 66 ~L~~L~Ls~N~l~~--~~~---l~~l~~L~~L~Ls~N~l~-------~l~----~l~~l~~L~~L~Ls~N~l~~l--~-~ 126 (605)
T 1m9s_A 66 NVTKLFLNGNKLTD--IKP---LTNLKNLGWLFLDENKIK-------DLS----SLKDLKKLKSLSLEHNGISDI--N-G 126 (605)
T ss_dssp TCCEEECTTSCCCC--CGG---GGGCTTCCEEECCSSCCC-------CCT----TSTTCTTCCEEECTTSCCCCC--G-G
T ss_pred CCCEEEeeCCCCCC--Chh---hccCCCCCEEECcCCCCC-------CCh----hhccCCCCCEEEecCCCCCCC--c-c
Confidence 46677765433221 111 222367888877644311 122 245678888888888877652 2 2
Q ss_pred HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEE
Q 023267 175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSI 250 (285)
Q Consensus 175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l 250 (285)
+..+|+|+.|+|.+|.- ..+..-...++|+.|.+++|. +..+. ...|+|+.|.+.+.... ..+..+++|+.|+|
T Consensus 127 l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp GGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred ccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 66788888888888742 222222244678888888875 43321 25688888888765431 24667888888888
Q ss_pred Eccc
Q 023267 251 EGDY 254 (285)
Q Consensus 251 ~~~~ 254 (285)
....
T Consensus 205 ~~N~ 208 (605)
T 1m9s_A 205 FSQE 208 (605)
T ss_dssp CSEE
T ss_pred cCCc
Confidence 7654
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.74 E-value=9.9e-06 Score=72.99 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=6.8
Q ss_pred CCCcceEEEEEE
Q 023267 268 FLPQLRTLKLNL 279 (285)
Q Consensus 268 ~~~~L~~L~L~~ 279 (285)
.+++|+.|+|+.
T Consensus 189 ~l~~L~~L~Ls~ 200 (487)
T 3oja_A 189 VFAKLKTLDLSS 200 (487)
T ss_dssp CCTTCCEEECCS
T ss_pred cCCCCCEEECCC
Confidence 356666666553
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.73 E-value=6.4e-06 Score=73.42 Aligned_cols=60 Identities=30% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDL 212 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c 212 (285)
.+++|++|+|++..++.-. ...+..+++|+.|++.+|..+..+... ...++|+.|.++++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 4677777777766654211 113455677777777666554443211 12345566665555
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.72 E-value=5.5e-05 Score=64.95 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=95.1
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~ 198 (285)
++++.|.+..+. ...++.. ....+++|++|+|++..++.-. ...+..+++|++|++.++.-. .....-
T Consensus 76 ~~L~~L~L~~n~-------l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSNG-------INTIEED--SFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp TTCCEEECTTSC-------CCEECTT--TTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred CCCCEEECCCCc-------cCccCHh--hcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCCCCcccCchhhh
Confidence 577777765332 1222222 1346789999999988776422 234678999999999886321 110122
Q ss_pred CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
...++|+.|.+.++..+..+.. ..++|+++.+.+... +..+..+++|++++++........ ..+...++
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~ 222 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTS 222 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTT
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcc
Confidence 3456899999998854555531 467888888877543 234667899999999876643322 22345678
Q ss_pred cceEEEEEEEe
Q 023267 271 QLRTLKLNLMA 281 (285)
Q Consensus 271 ~L~~L~L~~~~ 281 (285)
+|+.|+++...
T Consensus 223 ~L~~L~L~~n~ 233 (353)
T 2z80_A 223 SVECLELRDTD 233 (353)
T ss_dssp TEEEEEEESCB
T ss_pred cccEEECCCCc
Confidence 89998887543
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.72 E-value=2.3e-05 Score=66.36 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=107.3
Q ss_pred hHHHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccE
Q 023267 79 NFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVS 158 (285)
Q Consensus 79 ~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~ 158 (285)
.+.......... .+.++.+.++...... .....+ ...++++.|.+..+.- ...+. ...+++|++
T Consensus 21 ~l~~~~~~~~~~--~~~L~~L~L~~n~l~~-~~~~~~--~~l~~L~~L~Ls~n~l-------~~~~~----~~~l~~L~~ 84 (317)
T 3o53_A 21 SLKQALASLRQS--AWNVKELDLSGNPLSQ-ISAADL--APFTKLELLNLSSNVL-------YETLD----LESLSTLRT 84 (317)
T ss_dssp THHHHHHHHHTT--GGGCSEEECTTSCCCC-CCHHHH--TTCTTCCEEECTTSCC-------EEEEE----ETTCTTCCE
T ss_pred chhhhHHHHhcc--CCCCCEEECcCCccCc-CCHHHh--hCCCcCCEEECCCCcC-------Ccchh----hhhcCCCCE
Confidence 344444444332 2357888876543221 111122 1226899888764331 11221 357899999
Q ss_pred EEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE---E-eCCCceEEEEecce
Q 023267 159 LRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE---I-NAPNLVSFEFSAGE 234 (285)
Q Consensus 159 L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~---i-~~p~L~~l~~~~~~ 234 (285)
|+|++..+++- ..++.|++|++.++. +..+... ..++|+.|.++++. +..+. + ..++|++|.+.+..
T Consensus 85 L~Ls~n~l~~l------~~~~~L~~L~l~~n~-l~~~~~~-~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 85 LDLNNNYVQEL------LVGPSIETLHAANNN-ISRVSCS-RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EECCSSEEEEE------EECTTCCEEECCSSC-CSEEEEC-CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC
T ss_pred EECcCCccccc------cCCCCcCEEECCCCc-cCCcCcc-ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC
Confidence 99999887652 356999999999874 3333322 35679999999885 44332 1 46899999998765
Q ss_pred eee----ee-cCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 235 LIV----SF-KHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 235 ~~~----~~-~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
... .+ ..+++|+.++++........ -...+++|+.|+|+...
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVK-----GQVVFAKLKTLDLSSNK 202 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEE-----CCCCCTTCCEEECCSSC
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccc-----cccccccCCEEECCCCc
Confidence 421 12 36799999999876643321 12358999999987543
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.70 E-value=5.8e-06 Score=69.34 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=97.7
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.+.+..+.- -.++. ...+++|++|+|++..+++-. . +..+++|+.|++.++.- ..+.--..
T Consensus 46 ~~L~~L~l~~~~i-------~~~~~----~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~~~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDI-------KSVQG----IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDLSSLKD 110 (291)
T ss_dssp HTCCEEECTTSCC-------CCCTT----GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCGGGGTT
T ss_pred CcccEEEccCCCc-------ccChh----HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCChhhcc
Confidence 5788887754321 12222 346899999999998876532 2 78999999999998742 22111234
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.++|+.|.++++. +..+. ...|+|+.|.+.+.... ..+..+++|+.++++......... +..+++|+.|+
T Consensus 111 l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~ 184 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLY 184 (291)
T ss_dssp CTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEE
T ss_pred CCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-----hcCCCccCEEE
Confidence 5689999999885 54442 15689999999876542 246678999999999766533211 67899999999
Q ss_pred EEEEe
Q 023267 277 LNLMA 281 (285)
Q Consensus 277 L~~~~ 281 (285)
|+...
T Consensus 185 L~~N~ 189 (291)
T 1h6t_A 185 LSKNH 189 (291)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 87643
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.67 E-value=7e-06 Score=70.32 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCC----------------
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPN---------------- 214 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~---------------- 214 (285)
..+++|++|+|.+..+++..- +..++.|+.|++.+|.....+..-...++|+.|.+.+|.-
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred cCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 455666666666655443211 4556666666666654332221122233445555444421
Q ss_pred -----CCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 215 -----LSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 215 -----l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+..+. ...++|+.+.+.+.... ..+..+++|+++++++........ +..+++|+.|+++.+
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTN 253 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCC
Confidence 11111 12344444444333221 114456667777666544322111 566777777777654
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.66 E-value=6.6e-06 Score=73.06 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 222 APNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 222 ~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.++|+.|.+.+.... ..+.++++|+.++|+........ ...+..+++|+.|+|+
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLH 287 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECC
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcC
Confidence 355555555544321 12445666666666654432211 2234566777777665
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.66 E-value=1.1e-05 Score=73.44 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=38.5
Q ss_pred CCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEE-EeCCCCceeEEEEecCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKLKYLELRDLP 213 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~c~ 213 (285)
..+++|++|+|++..+++-. ....+..+++|++|+++++.- ..+. .-...++|+.|.++++.
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSC
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCC
Confidence 46788888888888776543 235678888999998888732 1110 00122456666666654
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.63 E-value=2.5e-05 Score=70.35 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=98.5
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.|.+..+.- -.++... ...+++|++|+|++..+++.. . +..++.|+.|+|+++. +..+. .
T Consensus 34 ~~L~~L~Ls~n~l-------~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~ 97 (487)
T 3oja_A 34 WNVKELDLSGNPL-------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---V 97 (487)
T ss_dssp GGCCEEECCSSCC-------CCCCGGG--GTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---E
T ss_pred CCccEEEeeCCcC-------CCCCHHH--HhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---C
Confidence 4788888875432 2233222 357899999999988765321 1 7789999999999883 33322 2
Q ss_pred CCceeEEEEecCCCCCeEEE-eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267 201 SLKLKYLELRDLPNLSNLEI-NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL 275 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 275 (285)
.++|+.|.++++. +..+.. ..|+|+.|.+.+... +..++.+++|+.++++...... .....+...+++|+.|
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHL 174 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEE
Confidence 2679999999986 555543 468999999987653 3456778999999998866543 2233344578999999
Q ss_pred EEEEEe
Q 023267 276 KLNLMA 281 (285)
Q Consensus 276 ~L~~~~ 281 (285)
+|+...
T Consensus 175 ~Ls~N~ 180 (487)
T 3oja_A 175 NLQYNF 180 (487)
T ss_dssp ECTTSC
T ss_pred ecCCCc
Confidence 987543
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.62 E-value=2.5e-05 Score=65.94 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHH
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYL 174 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l 174 (285)
.++.+.++...... +.. ....++++.|.+..+.-. .++ ....+++|++|+|++..+++- ..
T Consensus 64 ~L~~L~L~~n~i~~--~~~---~~~l~~L~~L~L~~n~l~-------~~~----~~~~l~~L~~L~l~~n~l~~~--~~- 124 (308)
T 1h6u_A 64 NLIGLELKDNQITD--LAP---LKNLTKITELELSGNPLK-------NVS----AIAGLQSIKTLDLTSTQITDV--TP- 124 (308)
T ss_dssp TCCEEECCSSCCCC--CGG---GTTCCSCCEEECCSCCCS-------CCG----GGTTCTTCCEEECTTSCCCCC--GG-
T ss_pred CCCEEEccCCcCCC--Chh---HccCCCCCEEEccCCcCC-------Cch----hhcCCCCCCEEECCCCCCCCc--hh-
Confidence 46777776543321 111 122268888888654311 122 245689999999999887653 22
Q ss_pred HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEE
Q 023267 175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSI 250 (285)
Q Consensus 175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l 250 (285)
+..+++|++|++.++.-. .+.--...++|+.|.++++. +..+. ...++|+.|.+.+.... ..+..+++|+.+++
T Consensus 125 l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202 (308)
T ss_dssp GTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEc
Confidence 778999999999987421 11112234678999999885 44432 25689999998876542 12677899999999
Q ss_pred EccccchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267 251 EGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 251 ~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
+........ . +..+++|+.|+|+...+
T Consensus 203 ~~N~l~~~~-~----l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 203 KNNQISDVS-P----LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TTSCCCBCG-G----GTTCTTCCEEEEEEEEE
T ss_pred cCCccCccc-c----ccCCCCCCEEEccCCee
Confidence 876653322 1 57899999999987654
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.61 E-value=6.5e-06 Score=69.55 Aligned_cols=89 Identities=20% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH--HH
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV--LH 172 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~--l~ 172 (285)
.++.+.+.-.......+..........+++++.+..+.-. -..|..++. ..+++|++|+|++..+++.. +.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT------GTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB------SCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec------cchhhhhhh-ccCCCCCEEEeecccccchhhhhH
Confidence 3555555433222233445555555578999999755422 122222211 35677777777777765421 11
Q ss_pred -HHHhcCCccceeecccCC
Q 023267 173 -YLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 173 -~ll~~cp~Le~L~L~~c~ 190 (285)
.-+..++.|++|+|.++.
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHTTBCSCCCEEEEECCS
T ss_pred HHHhhhccCCCEEEeeCCC
Confidence 112356777777776653
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.59 E-value=2.1e-05 Score=74.91 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCCCccEEEeeeEEeChhHHH--HHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeE--EEeCCCce
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLH--YLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNL--EINAPNLV 226 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~--~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l--~i~~p~L~ 226 (285)
..+++|++|+|++..+++.... ..+.+|+.|++|++.++.-...... ...++|+.|.+.++.-...+ .-..++|+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 4577888888887776554322 2367788888888877642222111 34456777777666421111 11345666
Q ss_pred EEEEeccee----eeeecCCCceEEEEEEc
Q 023267 227 SFEFSAGEL----IVSFKHVPSLVEMSIEG 252 (285)
Q Consensus 227 ~l~~~~~~~----~~~~~~~~~L~~l~l~~ 252 (285)
+|.+.+... +..+..+++|+.++++.
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 666554432 12244455555555544
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.59 E-value=2.1e-05 Score=69.81 Aligned_cols=146 Identities=21% Similarity=0.141 Sum_probs=90.4
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS-- 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~-- 198 (285)
++++.|.+..+.- -.+|... ...+++|++|+|++..++.-. ...+..+++|++|+|.++..+..+.-.
T Consensus 112 ~~L~~L~L~~n~l-------~~~~~~~--~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 112 ANLNTLELFDNRL-------TTIPNGA--FVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp SSCCEEECCSSCC-------SSCCTTT--SCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred ccCCEEECCCCcC-------CeeCHhH--hhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 6788888764421 2333322 245788888888877654321 123567888888888887666554321
Q ss_pred CCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267 199 GPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL 272 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L 272 (285)
...++|+.|.+.++. +..+. ...++|+.|.+.+.... ..+.++++|+++++......... ...+..+++|
T Consensus 182 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L 257 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE---RNAFDNLQSL 257 (440)
T ss_dssp TTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC---TTSSTTCTTC
T ss_pred hcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC---hhhhcCCCCC
Confidence 234578888888774 44432 14577888888766432 24567888888888765543221 1234677888
Q ss_pred eEEEEEEE
Q 023267 273 RTLKLNLM 280 (285)
Q Consensus 273 ~~L~L~~~ 280 (285)
+.|+|+..
T Consensus 258 ~~L~L~~N 265 (440)
T 3zyj_A 258 VEINLAHN 265 (440)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 88887643
No 44
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.58 E-value=5.3e-06 Score=72.31 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH---HHHHHhcC---------Cccceeeccc
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV---LHYLLCYC---------PLLEVLTLKG 188 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~---l~~ll~~c---------p~Le~L~L~~ 188 (285)
++++.|.+..+.-.. .+...+|..+ ..+++|++|+|+++.+++.. +...+..+ |.|++|+|.+
T Consensus 94 ~~L~~L~Ls~n~l~~--~~~~~l~~~l---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGP--TAQEPLIDFL---SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCCEEECCSCCCCT--TTHHHHHHHH---HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred CcccEEECCCCcCCH--HHHHHHHHHH---HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 567777665433111 1111233222 34677888888877776544 33333344 7888888877
Q ss_pred CCCc-ce-EEE---eCCCCceeEEEEecCCCCCeE---------EEeCCCceEEEEeccee--------eeeecCCCceE
Q 023267 189 AEKL-IR-IRV---SGPSLKLKYLELRDLPNLSNL---------EINAPNLVSFEFSAGEL--------IVSFKHVPSLV 246 (285)
Q Consensus 189 c~~~-~~-~~i---~~~~~~L~~L~i~~c~~l~~l---------~i~~p~L~~l~~~~~~~--------~~~~~~~~~L~ 246 (285)
|.-- .. ..+ -...++|+.|.+.+|. +... ....|+|+.|.+.+... +..+..+++|+
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 6421 01 000 0123468888888874 4311 11467888888876543 12356778888
Q ss_pred EEEEEccccchh-hhHHhhhhc--CCCcceEEEEEEEee
Q 023267 247 EMSIEGDYCTYF-VYTLHQFSS--FLPQLRTLKLNLMAV 282 (285)
Q Consensus 247 ~l~l~~~~~~~~-~~~~~~ll~--~~~~L~~L~L~~~~~ 282 (285)
.++|+....... ...+...+. .+++|+.|+|+.+.+
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 888887654332 223334443 388888888876543
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.57 E-value=6.8e-06 Score=68.44 Aligned_cols=146 Identities=18% Similarity=0.070 Sum_probs=89.6
Q ss_pred CCceEEEEEecCCCCCCCceeec-CccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE-EE
Q 023267 121 KRVQRLELDFSESKTEGHELHTF-SPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RV 197 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~-p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i 197 (285)
++++.|.+....- ..+ |.. ...+++|++|+|.+.. ++.-. ...+..+++|++|++.++.-.... ..
T Consensus 56 ~~L~~L~l~~n~l-------~~~~~~~---~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~ 124 (285)
T 1ozn_A 56 RNLTILWLHSNVL-------ARIDAAA---FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGL 124 (285)
T ss_dssp TTCCEEECCSSCC-------CEECTTT---TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCCEEECCCCcc-------ceeCHhh---cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhH
Confidence 5777777653321 122 222 3467888999888775 43321 123567888999999887421110 11
Q ss_pred eCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCC
Q 023267 198 SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFL 269 (285)
Q Consensus 198 ~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~ 269 (285)
-...++|+.|.+.++. +..+.. ..++|++|.+.+.... ..+..+++|+.++++....... ....+..+
T Consensus 125 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l 200 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV---HPHAFRDL 200 (285)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTC
T ss_pred hhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc---CHhHccCc
Confidence 1234678888888875 444331 4688999998876432 1256789999999987654322 12335678
Q ss_pred CcceEEEEEEEe
Q 023267 270 PQLRTLKLNLMA 281 (285)
Q Consensus 270 ~~L~~L~L~~~~ 281 (285)
++|+.|+|+...
T Consensus 201 ~~L~~L~l~~n~ 212 (285)
T 1ozn_A 201 GRLMTLYLFANN 212 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred ccccEeeCCCCc
Confidence 899999887543
No 46
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.51 E-value=1.3e-05 Score=69.85 Aligned_cols=155 Identities=18% Similarity=0.115 Sum_probs=97.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeC---h---hHH---HHHHhcCCccceeecccCCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIP---E---EVL---HYLLCYCPLLEVLTLKGAEK 191 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~---~---~~l---~~ll~~cp~Le~L~L~~c~~ 191 (285)
++++.|.+..+.-. ......++. ....+++|++|+|+++.++ + .++ ...+..++.|++|+|.++.-
T Consensus 32 ~~L~~L~L~~n~i~--~~~~~~l~~---~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 32 DSVKEIVLSGNTIG--TEAARWLSE---NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp SCCCEEECTTSEEC--HHHHHHHHH---TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCccEEECCCCCCC--HHHHHHHHH---HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 68988887643211 000011111 1346899999999987543 1 233 33467899999999998742
Q ss_pred cc----eE--EEeCCCCceeEEEEecCCCCCeEE---E-e----C---------CCceEEEEecceee--------eeec
Q 023267 192 LI----RI--RVSGPSLKLKYLELRDLPNLSNLE---I-N----A---------PNLVSFEFSAGELI--------VSFK 240 (285)
Q Consensus 192 ~~----~~--~i~~~~~~L~~L~i~~c~~l~~l~---i-~----~---------p~L~~l~~~~~~~~--------~~~~ 240 (285)
.. .+ .+ ...++|+.|.+.+|. +.... + . . |+|++|.+.+.... -.+.
T Consensus 107 ~~~~~~~l~~~l-~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 107 GPTAQEPLIDFL-SKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CTTTHHHHHHHH-HHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 21 01 11 234689999999986 43211 1 1 1 89999999765431 2345
Q ss_pred CCCceEEEEEEccccchh-hhHHhh-hhcCCCcceEEEEEEEee
Q 023267 241 HVPSLVEMSIEGDYCTYF-VYTLHQ-FSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 241 ~~~~L~~l~l~~~~~~~~-~~~~~~-ll~~~~~L~~L~L~~~~~ 282 (285)
.+++|+.++++....... ...+.. .+..+++|+.|+|+...+
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 789999999998665421 122333 667899999999986654
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.50 E-value=5.4e-05 Score=69.77 Aligned_cols=97 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE------EeCC
Q 023267 150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE------INAP 223 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~------i~~p 223 (285)
...+++|++|++.++.++. +..+ .+|.|++|++.++.......+. ..++|+.|.++++. +..+. ...+
T Consensus 303 l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence 3456777777777777622 3232 6777777777776544433222 33456666666553 33221 1345
Q ss_pred CceEEEEeccee---eeeecCCCceEEEEEEc
Q 023267 224 NLVSFEFSAGEL---IVSFKHVPSLVEMSIEG 252 (285)
Q Consensus 224 ~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~ 252 (285)
+|++|.+.+... +..+.++++|+.++++.
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCC
Confidence 555555544322 11233445555555543
No 48
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.49 E-value=3.4e-05 Score=73.43 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCC-eEE----EeCCC
Q 023267 150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLS-NLE----INAPN 224 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~-~l~----i~~p~ 224 (285)
...+++|++|+|++..+++. +...+..+++|++|++.+|.-...+... ..++|+.|.+.+|. +. .+. -.+++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENK-FTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSE-EEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCc-cCCccCHHHHhhcCc
Confidence 45678899999988887654 3345778899999999887532221111 44578888887774 21 111 11377
Q ss_pred ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
|++|.+.+.... ..++.+++|++++++...... .-....+..+++|+.|+|+...
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSE
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCc
Confidence 888887765432 235667888888877654321 0111224566777777766543
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.49 E-value=0.00016 Score=65.78 Aligned_cols=146 Identities=20% Similarity=0.187 Sum_probs=85.9
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~ 198 (285)
++++.|.+..+. .-.++... ...+++|++|+|++..+++..- ..+.++++|++|++.++.-. .....-
T Consensus 50 ~~L~~L~Ls~n~-------i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 50 ANLQVLILKSSR-------INTIEGDA--FYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp TTCCEEECTTSC-------CCEECTTT--TTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CcccEEECCCCC-------cCccChhh--ccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhh
Confidence 577777765332 12233221 3467889999998887765432 23578899999999887421 111122
Q ss_pred CCCCceeEEEEecCCCCCeEE----EeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 199 GPSLKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
...++|+.|.+.++.....+. ...++|+.|.+.+... +..+..+++|++++++......... .+...++
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~ 196 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILS 196 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTT
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcc
Confidence 344578888888876444442 1357788888776543 2235567788888887654332211 2234466
Q ss_pred cceEEEEEE
Q 023267 271 QLRTLKLNL 279 (285)
Q Consensus 271 ~L~~L~L~~ 279 (285)
+|+.|+++.
T Consensus 197 ~L~~L~L~~ 205 (549)
T 2z81_A 197 SVRYLELRD 205 (549)
T ss_dssp TBSEEEEES
T ss_pred cccEEEccC
Confidence 666666654
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.49 E-value=1.3e-05 Score=66.34 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=90.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~ 198 (285)
++++.|.+..+.-. .++ ....+++|++|+|.+..+++-. ...+..++.|++|++.++.- ..+.- -
T Consensus 63 ~~L~~L~l~~n~l~-------~~~----~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~ 129 (272)
T 3rfs_A 63 PNVRYLALGGNKLH-------DIS----ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQL-QSLPDGVF 129 (272)
T ss_dssp TTCCEEECTTSCCC-------CCG----GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTT
T ss_pred CCCcEEECCCCCCC-------Cch----hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcC-CccCHHHh
Confidence 67777776533211 111 2456788999998887765321 22356788999999988742 21111 1
Q ss_pred CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
...++|+.|.+.++. +..+.- ..++|+.|.+.+.... ..+..+++|+.+++......... ...+..++
T Consensus 130 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~ 205 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLT 205 (272)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCT
T ss_pred ccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC---HHHHhCCc
Confidence 234678889988884 554432 4688999988776542 12467899999999876543221 23457789
Q ss_pred cceEEEEEE
Q 023267 271 QLRTLKLNL 279 (285)
Q Consensus 271 ~L~~L~L~~ 279 (285)
+|+.|+|+.
T Consensus 206 ~L~~L~l~~ 214 (272)
T 3rfs_A 206 SLQYIWLHD 214 (272)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEccC
Confidence 999988864
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.49 E-value=3.1e-05 Score=69.19 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEF 230 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~ 230 (285)
.+++|++|++++..+++-. +..++.|++|++.++...+.+.+. ..++|+.|.++++. +..+.+ ..++|+.|.+
T Consensus 125 ~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l 198 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFNK-ITELDVSQNKLLNRLNC 198 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-TCTTCCEEECCSSC-CCCCCCTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccc-cCCcCCEEECCCCc-cceeccccCCCCCEEEC
Confidence 4455555555554443321 344555555555555433333222 22345555555553 333322 2455555555
Q ss_pred eccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 231 SAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 231 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.+... ...++.+++|+.++++....... . +..+++|+.|+++
T Consensus 199 ~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i--p----~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 199 DTNNITKLDLNQNIQLTFLDCSSNKLTEI--D----VTPLTQLTYFDCS 241 (457)
T ss_dssp CSSCCSCCCCTTCTTCSEEECCSSCCSCC--C----CTTCTTCSEEECC
T ss_pred cCCcCCeeccccCCCCCEEECcCCccccc--C----ccccCCCCEEEee
Confidence 44332 12344556666666554433221 0 3445555555554
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.49 E-value=3.2e-05 Score=68.81 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267 150 TSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPN 224 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 224 (285)
...+++|++|+|.++. ++.- -...+.++++|+.|+|.++.- ..+.--...++|+.|.++++. +..+.- ..++
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 243 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSS 243 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTT
T ss_pred HhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCc-CcccCcccccCccC
Confidence 3468999999998743 2111 112356789999999998742 222112344678999998885 555432 4688
Q ss_pred ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
|+.|.+.+.... ..+.++++|+.++|++....... ...+..+++|+.|+|+.
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCS
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccC
Confidence 999988776542 23567899999999876543221 23356788888888763
No 53
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.48 E-value=4e-06 Score=72.92 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCCccEEEeeeEEeChhHHHHHH----hcCCccceeecccCC
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLL----CYCPLLEVLTLKGAE 190 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll----~~cp~Le~L~L~~c~ 190 (285)
+++|++|+|++..+++.+...+. ..++.|++|+|.+|.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 34566666666666665543332 245666666666663
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.48 E-value=1.3e-05 Score=67.43 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=24.3
Q ss_pred CceeEEEEecCCCCCeEEE----eCCCceEEEEeccee----eeeecCCCceEEEEEEccc
Q 023267 202 LKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~ 254 (285)
++|+.|.++++. +..+.. ..|+|++|.+.+... ...+..+++|+.++++...
T Consensus 175 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 175 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 345555555553 333311 235555555554432 1123445666666665443
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.47 E-value=8.3e-06 Score=68.97 Aligned_cols=152 Identities=22% Similarity=0.175 Sum_probs=96.5
Q ss_pred hCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChh--HHHHHHh-cCCccceeecccCCCcceE-
Q 023267 120 DKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEE--VLHYLLC-YCPLLEVLTLKGAEKLIRI- 195 (285)
Q Consensus 120 ~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~--~l~~ll~-~cp~Le~L~L~~c~~~~~~- 195 (285)
.+++++|.+..+.-. ...|..++ ...+++|++|+|++..+++. .+..+.. ..++|++|+|.++.-....
T Consensus 94 l~~L~~L~L~~n~l~------~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVT------GTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCB------SCCCCCSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCccc------chhHHHHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 479999999866422 13444332 25789999999999987664 2333221 2399999999987432111
Q ss_pred -EEeCCCCceeEEEEecCCCCCe------EE-EeCCCceEEEEecceee-------eeecCCCceEEEEEEccccchhhh
Q 023267 196 -RVSGPSLKLKYLELRDLPNLSN------LE-INAPNLVSFEFSAGELI-------VSFKHVPSLVEMSIEGDYCTYFVY 260 (285)
Q Consensus 196 -~i~~~~~~L~~L~i~~c~~l~~------l~-i~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~ 260 (285)
.+ ...++|+.|.++++.-... +. ...++|++|.+.+.... ..+..+++|+.++++........
T Consensus 167 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 244 (312)
T 1wwl_A 167 EQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA- 244 (312)
T ss_dssp TTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-
T ss_pred HHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-
Confidence 12 2346799999998862211 11 24689999998876542 12346799999999876543311
Q ss_pred HHhhhhcCCCcceEEEEEEEe
Q 023267 261 TLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 261 ~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.......+++|+.|+|+...
T Consensus 245 -~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 245 -GAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp -CCSCCCCCTTCCEEECTTSC
T ss_pred -chhhhhhcCCCCEEECCCCc
Confidence 11223557899999887543
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.44 E-value=2.6e-05 Score=64.39 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
.+++|++|+|.+..++.-. ...+..+++|++|++.++.- ..+. .-...++|+.|.++++. +..+.. ..++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSL 159 (270)
T ss_dssp SCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccc
Confidence 4677777777766554321 12345667777777766531 1111 01233567777777664 333321 34677
Q ss_pred eEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
+.|.+.+.... ..+..+++|+.++++........ ...+..+++|+.|+|+
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECC
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC---HHHhccccCCCEEEec
Confidence 77776654331 12445677777777654432211 1224556677776664
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.44 E-value=1.4e-05 Score=73.10 Aligned_cols=127 Identities=13% Similarity=-0.016 Sum_probs=64.9
Q ss_pred CCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCC--------------C-
Q 023267 151 SSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP--------------N- 214 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~--------------~- 214 (285)
..+++|++|++++..++... ....+.+++.|++|++.++.-......-...++|+.|.+.++. .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 45777888888776654332 1223556788888887776421111101122345555444331 0
Q ss_pred ---------CCeEE----EeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 215 ---------LSNLE----INAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 215 ---------l~~l~----i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
+..+. -..|+|+.|.+.+... +..+..+++|+.++++....... ....+..+++|+.|+
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLN 500 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEE
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC---ChhhhhcccCCCEEe
Confidence 11110 0245666666655432 23355667777777765443221 112345677788777
Q ss_pred EEEE
Q 023267 277 LNLM 280 (285)
Q Consensus 277 L~~~ 280 (285)
|+..
T Consensus 501 l~~n 504 (570)
T 2z63_A 501 MASN 504 (570)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.41 E-value=2.3e-05 Score=64.83 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeE---EE-eCCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNL---EI-NAPN 224 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l---~i-~~p~ 224 (285)
..+++|++|+|++..++...- ..+..++.|++|+|.++.- ..+.. -...++|+.|.+.++. +..+ .+ ..++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred ccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence 457778888887766543211 1245678888888877632 22111 1233567777777664 3222 12 4577
Q ss_pred ceEEEEeccee-----eeeecCCCceEEEEEEcccc
Q 023267 225 LVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYC 255 (285)
Q Consensus 225 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~ 255 (285)
|++|.+.+... +..+..+++|+.++++....
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 78887765432 22355678888888876554
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.39 E-value=1.9e-05 Score=66.68 Aligned_cols=172 Identities=15% Similarity=0.055 Sum_probs=100.3
Q ss_pred CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCC--CCCCCccEEEeeeEEeChhHH
Q 023267 94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTT--SSFSSLVSLRLIDVDIPEEVL 171 (285)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~--~~~~~L~~L~L~~~~i~~~~l 171 (285)
..++.+.++........-..+. ....+++++|.+....-. ..|..+... ..+++|++|+|++..++...-
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~-------~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWA-------TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCBCS-------SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCCCc-------chhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 3577888876543210000000 012268888888754422 113222111 123889999999888754321
Q ss_pred HHHHhcCCccceeecccCCCcceE----EE-eCCCCceeEEEEecCCCCCeEE-------EeCCCceEEEEecceee---
Q 023267 172 HYLLCYCPLLEVLTLKGAEKLIRI----RV-SGPSLKLKYLELRDLPNLSNLE-------INAPNLVSFEFSAGELI--- 236 (285)
Q Consensus 172 ~~ll~~cp~Le~L~L~~c~~~~~~----~i-~~~~~~L~~L~i~~c~~l~~l~-------i~~p~L~~l~~~~~~~~--- 236 (285)
..+..+++|++|++.++.-.+.+ .+ ....++|+.|.+.++. +..+. -..++|+.|.+.+....
T Consensus 167 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 167 -EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp -TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred -HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 23567899999999987633221 11 1345679999999885 54221 13489999998766432
Q ss_pred --eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 237 --VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 237 --~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
..+..+++|+.++++.......... +. ++|+.|+|+...
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~----~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQVPKG----LP--AKLSVLDLSYNR 285 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSSCCSS----CC--SEEEEEECCSSC
T ss_pred chhhhhhcCCCCEEECCCCccChhhhh----cc--CCceEEECCCCC
Confidence 2334578999999987664421111 11 788988887544
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.39 E-value=0.00015 Score=64.75 Aligned_cols=125 Identities=20% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce--EEEeCCCCceeEEEEecCCC--------------
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR--IRVSGPSLKLKYLELRDLPN-------------- 214 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~i~~~~~~L~~L~i~~c~~-------------- 214 (285)
..+++|++|+|.+..++.-. ...+..++.|+.|+|.++.-... ..+ ...++|+.|.+.+|..
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccc
Confidence 46778888888887765432 23456778888888876532110 011 1223455555555432
Q ss_pred ---------CCeEE----EeCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267 215 ---------LSNLE----INAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 215 ---------l~~l~----i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L 277 (285)
+..+. -..++|+.|.+.+.... ..+.++++|++++|.+....... ...+..+++|+.|+|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNV 303 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEEC
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEEC
Confidence 22221 02456666666554321 12445677777777654432211 123467788888887
Q ss_pred EEE
Q 023267 278 NLM 280 (285)
Q Consensus 278 ~~~ 280 (285)
+..
T Consensus 304 ~~N 306 (477)
T 2id5_A 304 SGN 306 (477)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.38 E-value=1.7e-05 Score=65.70 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=52.8
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPN 224 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 224 (285)
..+++|++|+|.+..++.. ....+..++.|+.|++.++. +..+.- -...++|+.|.+.++. +..+.. ..++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence 3466777777766665421 11224556777777776663 221110 1223456777776664 433321 3466
Q ss_pred ceEEEEecceee----eeecCCCceEEEEEEcc
Q 023267 225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~ 253 (285)
|+.|.+.+.... ..+..+++|+.+++.+.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 777766654431 12445677777777653
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.38 E-value=7.9e-05 Score=66.64 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=78.1
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
..+++|++|+|.+..++.-. ...+.++++|++|+|.++.-.... ..-...++|+.|.+.++. +..+.. ..++|
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSL 154 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTC
T ss_pred hCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCC
Confidence 46788888888876654321 123567888888888876421110 001234578888888774 444421 46788
Q ss_pred eEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
+.|.+.+.... ..+.++++|+.+++......... ...+..+++|+.|+++.
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC---TTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC---hhhcccCcccceeeCCC
Confidence 88888776432 23567888999888875543221 12356788999988875
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.38 E-value=6.2e-05 Score=67.23 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE---------------------eCCCCceeEEEEe
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV---------------------SGPSLKLKYLELR 210 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i---------------------~~~~~~L~~L~i~ 210 (285)
.+++|++|++++..+++..- +..++.|++|++.++.-.....+ -...++|+.|.+.
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred cCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence 45666666666655543221 45556666666655421100000 1122345555555
Q ss_pred cCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 211 DLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 211 ~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+|. +..+. -..|+|+.|.+.+.... ..+..+++|+.++++........ . +..+++|+.|+++..
T Consensus 318 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 318 FNN-ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT----P-LANLTRITQLGLNDQ 385 (466)
T ss_dssp SSC-CSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG----G-GTTCTTCCEEECCCE
T ss_pred CCc-CCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccc----h-hhcCCCCCEEeccCC
Confidence 553 22211 13466666666554321 23456677777777654432211 1 567778887777654
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.37 E-value=7.3e-05 Score=64.17 Aligned_cols=146 Identities=17% Similarity=0.132 Sum_probs=95.6
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~ 198 (285)
+++++|.+.... .-.+|... ...+++|++|+|++..+++.. ...+..+++|++|++.++.- ..+.- -
T Consensus 52 ~~L~~L~l~~n~-------i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~ 120 (353)
T 2z80_A 52 EAVKSLDLSNNR-------ITYISNSD--LQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL-SNLSSSWF 120 (353)
T ss_dssp TTCCEEECTTSC-------CCEECTTT--TTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-SSCCHHHH
T ss_pred ccCcEEECCCCc-------CcccCHHH--hccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC-CcCCHhHh
Confidence 467777765332 12333321 356899999999987765421 12357789999999998742 22111 1
Q ss_pred CCCCceeEEEEecCCCCCeEE-----EeCCCceEEEEecce-e-e---eeecCCCceEEEEEEccccchhhhHHhhhhcC
Q 023267 199 GPSLKLKYLELRDLPNLSNLE-----INAPNLVSFEFSAGE-L-I---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSF 268 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~-----i~~p~L~~l~~~~~~-~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~ 268 (285)
...++|++|.+.++. +..+. -..++|++|.+.+.. . . ..+.++++|++++++....... ....+..
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~ 196 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---EPKSLKS 196 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---CTTTTTT
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---CHHHHhc
Confidence 235689999999885 44432 257899999998752 2 2 2466799999999987654322 1233577
Q ss_pred CCcceEEEEEEEe
Q 023267 269 LPQLRTLKLNLMA 281 (285)
Q Consensus 269 ~~~L~~L~L~~~~ 281 (285)
+++|+.|+++...
T Consensus 197 l~~L~~L~l~~n~ 209 (353)
T 2z80_A 197 IQNVSHLILHMKQ 209 (353)
T ss_dssp CSEEEEEEEECSC
T ss_pred cccCCeecCCCCc
Confidence 8999999998654
No 65
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.37 E-value=7.7e-05 Score=66.62 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP 200 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~ 200 (285)
++++.|++..+.- ..+|. ...+++|++|++.+..+.+.. . +..+++|++|++.+|.- ..+.--..
T Consensus 68 ~~L~~L~Ls~n~l-------~~~~~----~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l-~~~~~~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNNQL-------TDITP----LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQI-TDIDPLKN 132 (466)
T ss_dssp TTCCEEECCSSCC-------CCCGG----GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCCGGGTT
T ss_pred cCCCEEECCCCcc-------CCchh----hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCC-CCChHHcC
Confidence 5777777654321 11221 346788888888877765432 2 67788888888887632 21111234
Q ss_pred CCceeEEEEecCCCCCeEE--EeCCCceEEEEeccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267 201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L 277 (285)
.++|+.|.+.+|. +..+. -..++|+.+.+..... ...+.++++|+.++++....... ..+..+++|+.|++
T Consensus 133 l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 133 LTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIA 206 (466)
T ss_dssp CTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEEC
T ss_pred CCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEe
Confidence 5678888887774 33221 1467888888754322 12366788999999887654322 12577889999888
Q ss_pred EEEe
Q 023267 278 NLMA 281 (285)
Q Consensus 278 ~~~~ 281 (285)
+.+.
T Consensus 207 ~~n~ 210 (466)
T 1o6v_A 207 TNNQ 210 (466)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7543
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.36 E-value=5.8e-05 Score=62.75 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=88.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~ 198 (285)
++++.|.+...... -.++.. ....+++|++|+|.+..+++.. ...+..+++|++|++.++.- ..+.. -
T Consensus 80 ~~L~~L~l~~n~~l------~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~ 149 (285)
T 1ozn_A 80 ALLEQLDLSDNAQL------RSVDPA--TFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNAL-QALPDDTF 149 (285)
T ss_dssp TTCCEEECCSCTTC------CCCCTT--TTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred cCCCEEeCCCCCCc------cccCHH--HhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcc-cccCHhHh
Confidence 67888887644211 112111 1345788888888887765421 22356788888888887642 11111 1
Q ss_pred CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
...++|+.|.+.++. +..+.. ..++|+.|.+.+.... ..+..+++|+.+++++....... ...+..++
T Consensus 150 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~ 225 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLR 225 (285)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCT
T ss_pred ccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHcccCc
Confidence 234578888888774 554432 3578888888765432 23556788888888876543221 23356788
Q ss_pred cceEEEEEE
Q 023267 271 QLRTLKLNL 279 (285)
Q Consensus 271 ~L~~L~L~~ 279 (285)
+|+.|+|+.
T Consensus 226 ~L~~L~l~~ 234 (285)
T 1ozn_A 226 ALQYLRLND 234 (285)
T ss_dssp TCCEEECCS
T ss_pred ccCEEeccC
Confidence 888887764
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.36 E-value=3.6e-05 Score=71.02 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~ 190 (285)
..+++|++|++.+..+++.. ...+..+|.|++|++.++.
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCS
T ss_pred cccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCC
Confidence 45677777777776655321 1224556667777666653
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.34 E-value=0.00011 Score=59.45 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=87.1
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEe-
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS- 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~- 198 (285)
.+++.+.+.... .-.+|... ...+++|++|+|.+.. ++.-. ...+.++++|++|++.+|+.+..+.-.
T Consensus 31 ~~l~~L~l~~n~-------l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETH-------LRTIPSHA--FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCC-------CSEECTTT--TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCc-------ceEECHHH--ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 478888876443 22344322 3467899999998774 43211 112467899999999886666554311
Q ss_pred -CCCCceeEEEEecCCCCCeEE--EeCCCce---EEEEecc-ee-e---eeecCCCceE-EEEEEccccchhhhHHhhhh
Q 023267 199 -GPSLKLKYLELRDLPNLSNLE--INAPNLV---SFEFSAG-EL-I---VSFKHVPSLV-EMSIEGDYCTYFVYTLHQFS 266 (285)
Q Consensus 199 -~~~~~L~~L~i~~c~~l~~l~--i~~p~L~---~l~~~~~-~~-~---~~~~~~~~L~-~l~l~~~~~~~~~~~~~~ll 266 (285)
...++|+.|.+.++. +..+. ...++|+ ++.+.+. .. . ..+.++++|+ +++++......... ..+
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---~~~ 176 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---YAF 176 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---TTT
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---hhc
Confidence 134678888888874 43332 1345666 8888775 33 1 2256788899 88887655432211 122
Q ss_pred cCCCcceEEEEEEE
Q 023267 267 SFLPQLRTLKLNLM 280 (285)
Q Consensus 267 ~~~~~L~~L~L~~~ 280 (285)
.. ++|+.|+|+..
T Consensus 177 ~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 177 NG-TKLDAVYLNKN 189 (239)
T ss_dssp TT-CEEEEEECTTC
T ss_pred CC-CCCCEEEcCCC
Confidence 33 68888877543
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.34 E-value=4.1e-05 Score=66.07 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=6.6
Q ss_pred CCceEEEEEec
Q 023267 121 KRVQRLELDFS 131 (285)
Q Consensus 121 ~~v~~L~l~~~ 131 (285)
+++++|.+..+
T Consensus 80 ~~L~~L~Ls~n 90 (362)
T 3goz_A 80 ANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECCSS
T ss_pred CCccEEECcCC
Confidence 56776666543
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.33 E-value=6.2e-05 Score=67.19 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEF 230 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~ 230 (285)
.+++|++|+|++..+++-. +..++.|++|++.++. +..+.+. ..++|+.|.+.++.....+.+ ..++|+.|.+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDVS-HNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCCT-TCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceeccc-cCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 3444444444444433311 3444555555554432 1111111 233455555555533333322 3456666666
Q ss_pred eccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 231 SAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 231 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
.+... .+.+..+++|+.++++....... + +..+++|+.|+++..
T Consensus 178 s~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 178 SFNKITELDVSQNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSN 222 (457)
T ss_dssp CSSCCCCCCCTTCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSS
T ss_pred CCCccceeccccCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCC
Confidence 55432 22355667777777765443321 1 456777777777643
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.31 E-value=0.00012 Score=59.15 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=101.8
Q ss_pred CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeE-EeChhHHH
Q 023267 94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDV-DIPEEVLH 172 (285)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~-~i~~~~l~ 172 (285)
..++.+.++........ ...+ ...++++.+.+..... .-.++...+ ..+++|++|+|.++ .++.-. .
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~--~~l~~L~~L~l~~n~~------l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i~-~ 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAF--SNLPNISRIYVSIDVT------LQQLESHSF--YNLSKVTHIEIRNTRNLTYID-P 98 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTT--TTCTTCCEEEEECCSS------CCEECTTTE--ESCTTCCEEEEEEETTCCEEC-T
T ss_pred CcccEEEEeCCcceEEC-HHHc--cCCCCCcEEeCCCCCC------cceeCHhHc--CCCcCCcEEECCCCCCeeEcC-H
Confidence 35788888765432200 0011 1136899999875431 123443222 46799999999983 343211 1
Q ss_pred HHHhcCCccceeecccCCCcceEEEeCCCCcee---EEEEecCCCCCeEEE----eCCCce-EEEEecceee-e--eecC
Q 023267 173 YLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLK---YLELRDLPNLSNLEI----NAPNLV-SFEFSAGELI-V--SFKH 241 (285)
Q Consensus 173 ~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~---~L~i~~c~~l~~l~i----~~p~L~-~l~~~~~~~~-~--~~~~ 241 (285)
..+.++++|++|++.++.-.. +.--....+|+ .|.+.++..+..+.. ..++|+ .+.+.+.... + ....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 235679999999999864211 11012334555 999999844666543 468899 9998776542 1 1113
Q ss_pred CCceEEEEEEccc-cchhhhHHhhhhcCC-CcceEEEEEEE
Q 023267 242 VPSLVEMSIEGDY-CTYFVYTLHQFSSFL-PQLRTLKLNLM 280 (285)
Q Consensus 242 ~~~L~~l~l~~~~-~~~~~~~~~~ll~~~-~~L~~L~L~~~ 280 (285)
.++|+++++.... ..... ...+..+ ++|+.|+++..
T Consensus 178 ~~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TCEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCC
Confidence 3799999998752 43221 1234667 89999988754
No 72
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=3.3e-05 Score=63.69 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE-EeCCCceEEEE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE-INAPNLVSFEF 230 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~-i~~p~L~~l~~ 230 (285)
.+++|+.|++.+..+++-. -+..++.|++|+|.++.- ..+.--...++|+.|.++++. +..+. +..++|+.|.+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred hcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence 4689999999998876532 367899999999998742 211113345789999999885 44331 22289999999
Q ss_pred ecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 231 SAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 231 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.+.... ..+..+++|+.++++....... ..+..+++|+.|+|+...
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc
Confidence 876542 2467899999999988665432 136788999999887543
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.27 E-value=0.00022 Score=62.04 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=30.0
Q ss_pred CCceEEEEeccee--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 223 PNLVSFEFSAGEL--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 223 p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
++|+.|.+.+... ...+..+++|++++++....... ....+..+++|+.|+|+..
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECCSS
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc---ChhHccccccCCEEECCCC
Confidence 4555555554432 12345567777777776543221 1123456777887777643
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.27 E-value=3.9e-05 Score=65.22 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=55.4
Q ss_pred CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267 152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLV 226 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 226 (285)
.+++|++|++.+..++..+ ....+..++.|++|++.++.- ..+.. ...++|+.|.+.++. +..+.. ..++|+
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNK-ITKVDAASLKGLNNLA 219 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS-SCCTTCSEEECTTSC-CCEECTGGGTTCTTCC
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCc-cccccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence 3445555555544443221 112234455555555554421 11000 011345666666553 333321 345666
Q ss_pred EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
+|.+.+.... ..+..+++|++++++...... +...+..+++|+.|+|+.
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----CCTTTTTCSSCCEEECCS
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----CChhhccCCCcCEEECCC
Confidence 6666554321 124456667777666544321 111235566677666653
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.27 E-value=2.3e-05 Score=64.73 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=94.4
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--Ee
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~ 198 (285)
+++++|.+.... .-.+|.. ....+++|++|+|.+..++.- -..++..++.|++|+|.++.- ..+. +-
T Consensus 37 ~~l~~L~l~~n~-------l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNK-------LSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVF 105 (270)
T ss_dssp TTCSEEECCSSC-------CSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTT
T ss_pred CCCCEEECcCCC-------CCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHc
Confidence 467777765432 1223322 134689999999998776532 123457789999999998742 2211 11
Q ss_pred CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
...++|+.|.+.++. +..+.. ..++|++|.+.+.... ..+..+++|++++++......... ..+..++
T Consensus 106 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 181 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---GAFDKLT 181 (270)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred ccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh---hHhccCC
Confidence 234679999999875 444432 4689999999876542 225678999999998765433211 2356789
Q ss_pred cceEEEEEEE
Q 023267 271 QLRTLKLNLM 280 (285)
Q Consensus 271 ~L~~L~L~~~ 280 (285)
+|+.|+|+..
T Consensus 182 ~L~~L~L~~N 191 (270)
T 2o6q_A 182 ELKTLKLDNN 191 (270)
T ss_dssp TCCEEECCSS
T ss_pred CcCEEECCCC
Confidence 9999998754
No 76
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.27 E-value=8.9e-05 Score=62.97 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce-E--EEeCCCCceeEEEEecCCCCCeEEE-eCCCceEE
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR-I--RVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSF 228 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~-~--~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l 228 (285)
+++|++|++.+..++... ...+..++.|+.|++.++.-... . ..-...++|+.|.+.++. +..+.. ..++|++|
T Consensus 120 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L 197 (330)
T 1xku_A 120 PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL 197 (330)
T ss_dssp CTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred cccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence 378888888887765432 33467899999999988743110 1 011234678999998885 444321 23899999
Q ss_pred EEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 229 EFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 229 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
.+.+.... ..+..+++|+.++++........ ...+..+++|+.|+|+...
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD---NGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC---TTTGGGSTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC---hhhccCCCCCCEEECCCCc
Confidence 99876542 34678999999999876543321 1235678999999987654
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.23 E-value=3.3e-05 Score=66.72 Aligned_cols=182 Identities=15% Similarity=0.086 Sum_probs=106.4
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHh-C-CceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH--
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVD-K-RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV-- 170 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~-~-~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~-- 170 (285)
.++.+.++.................. + ++++|.+..+.-...+. ..+...+ ...+++|++|+|++..+++..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~l--~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--DELVQIL--AAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH--HHHHHHH--HTSCTTCCEEECCSSCGGGSCHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH--HHHHHHH--hccCCCccEEECcCCcCChHHHH
Confidence 37888876544322222222233222 4 79999887543221110 0111100 012489999999999987644
Q ss_pred -HHHHHhcC-CccceeecccCCCcceEE-------EeCCCCceeEEEEecCCCCCeEEE--------eC-CCceEEEEec
Q 023267 171 -LHYLLCYC-PLLEVLTLKGAEKLIRIR-------VSGPSLKLKYLELRDLPNLSNLEI--------NA-PNLVSFEFSA 232 (285)
Q Consensus 171 -l~~ll~~c-p~Le~L~L~~c~~~~~~~-------i~~~~~~L~~L~i~~c~~l~~l~i--------~~-p~L~~l~~~~ 232 (285)
+...+..+ +.|++|+|.++.- +... +.....+|+.|.+++|. +..... .. ++|++|.+.+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecC
Confidence 45556666 8999999999852 2211 11112479999999985 442211 23 4999999987
Q ss_pred ceee--------eeecCC-CceEEEEEEccccchh-hhHHhhhhcC-CCcceEEEEEEEee
Q 023267 233 GELI--------VSFKHV-PSLVEMSIEGDYCTYF-VYTLHQFSSF-LPQLRTLKLNLMAV 282 (285)
Q Consensus 233 ~~~~--------~~~~~~-~~L~~l~l~~~~~~~~-~~~~~~ll~~-~~~L~~L~L~~~~~ 282 (285)
.... -.+..+ ++|+.++|+....... ...+...+.. .++|+.|+|+...+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 6431 123345 5999999997664331 2234444444 56999999986544
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.23 E-value=9.8e-05 Score=71.01 Aligned_cols=147 Identities=19% Similarity=0.152 Sum_probs=85.1
Q ss_pred CCceEEEEEecCCCCCCCceeec-CccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EE
Q 023267 121 KRVQRLELDFSESKTEGHELHTF-SPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RV 197 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~-p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i 197 (285)
+++++|++....- -.+ |.. ...+++|++|+|++..+...--...+..+++|+.|+|.++.- ..+ ..
T Consensus 24 ~~l~~LdLs~N~i-------~~i~~~~---~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~ 92 (844)
T 3j0a_A 24 NTTERLLLSFNYI-------RTVTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDA 92 (844)
T ss_dssp TTCCEEEEESCCC-------CEECSSS---CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTS
T ss_pred CCcCEEECCCCcC-------CccChhH---CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhH
Confidence 5777887765431 122 222 346788888888876321110012246788888888887742 211 11
Q ss_pred eCCCCceeEEEEecCCCCCe-E-----EEeCCCceEEEEecceee-----eeecCCCceEEEEEEccccchh-hhHHhhh
Q 023267 198 SGPSLKLKYLELRDLPNLSN-L-----EINAPNLVSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-VYTLHQF 265 (285)
Q Consensus 198 ~~~~~~L~~L~i~~c~~l~~-l-----~i~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-~~~~~~l 265 (285)
-....+|+.|.+++|. +.. + .-..++|+.|.+++.... ..++++++|+.++++...+... ..++..+
T Consensus 93 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 1234578888888875 332 1 125678888888765431 2366788888888887654322 2222222
Q ss_pred hcCCCcceEEEEEEEe
Q 023267 266 SSFLPQLRTLKLNLMA 281 (285)
Q Consensus 266 l~~~~~L~~L~L~~~~ 281 (285)
.. ++|+.|+++...
T Consensus 172 ~~--~~L~~L~L~~n~ 185 (844)
T 3j0a_A 172 QG--KTLSFFSLAANS 185 (844)
T ss_dssp HH--CSSCCCEECCSB
T ss_pred cC--CccceEECCCCc
Confidence 11 678888776543
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.22 E-value=2.6e-05 Score=69.29 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=110.4
Q ss_pred CCceEEEEeeCCCcccHHHHHHHH-HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFA-VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY 173 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ 173 (285)
.++.+.++..... -..|.... ..++++.+.+..+.-.. .....++.. ...+++|++|+|++..+++.+...
T Consensus 4 ~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~---l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 4 DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSA---LRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHH---HHTCTTCCEEECTTCCCHHHHHHH
T ss_pred cceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHH---HHhCCCcCEEeCCCCcCChHHHHH
Confidence 3556666544322 22344422 33799999998654210 001122332 235799999999999998888888
Q ss_pred HHhcCC----ccceeecccCCCcc----e-EEEeCCCCceeEEEEecCCCCCeEEE---------eCCCceEEEEeccee
Q 023267 174 LLCYCP----LLEVLTLKGAEKLI----R-IRVSGPSLKLKYLELRDLPNLSNLEI---------NAPNLVSFEFSAGEL 235 (285)
Q Consensus 174 ll~~cp----~Le~L~L~~c~~~~----~-~~i~~~~~~L~~L~i~~c~~l~~l~i---------~~p~L~~l~~~~~~~ 235 (285)
+...++ .|++|+|.+|.--. . ...-...++|+.|.++++. +....+ ..++|++|.+.+...
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 888777 79999999985221 1 1111345689999999886 432111 145799999877643
Q ss_pred e--------eeecCCCceEEEEEEccccchh-hhHHhh-hhcCCCcceEEEEEEEee
Q 023267 236 I--------VSFKHVPSLVEMSIEGDYCTYF-VYTLHQ-FSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 236 ~--------~~~~~~~~L~~l~l~~~~~~~~-~~~~~~-ll~~~~~L~~L~L~~~~~ 282 (285)
. -.+..+++|+++++++...... ...+.. +....++|+.|+|+.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 2 1244579999999997664321 122222 223567999999876543
No 80
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.20 E-value=0.00012 Score=63.21 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=27.0
Q ss_pred CCCccEEEeeeEEeChhHHHHHHh-cCCccceeecc
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLC-YCPLLEVLTLK 187 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~-~cp~Le~L~L~ 187 (285)
.++|++|+|..+.++++.+..+.. .+|+|++|+|.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 578888888877788777776653 68888888875
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00012 Score=66.12 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=80.2
Q ss_pred CCCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCe-EEEe-CCCc
Q 023267 151 SSFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSN-LEIN-APNL 225 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~-l~i~-~p~L 225 (285)
..+++|++|+|++..+++- .+...+..+++|+.|+++++.-...+. .-...++|+.|.++++. +.. +... .++|
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L 423 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRI 423 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccC
Confidence 5678888888888887652 345567788999999998864322111 11233578888888875 321 1111 2688
Q ss_pred eEEEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 226 VSFEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 226 ~~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
+.|.+.+.... ..+..+++|+.+++++......... .+..+++|+.|+++.
T Consensus 424 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcC
Confidence 88888776542 2344788999999987654422111 356788888888764
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.19 E-value=4.7e-05 Score=67.59 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=58.2
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeE------EEeC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNL------EINA 222 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l------~i~~ 222 (285)
..+++|++|+|.+..+....-...+.++++|++|+|.++.- ..+. .-...++|++|.+.+|. +... .-..
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCC-CCccccCcccccCc
Confidence 45777888888776543211112355678888888877642 2111 01223567777777775 3321 1135
Q ss_pred CCceEEEEecceee----ee-ecCCCceEEEEEEcccc
Q 023267 223 PNLVSFEFSAGELI----VS-FKHVPSLVEMSIEGDYC 255 (285)
Q Consensus 223 p~L~~l~~~~~~~~----~~-~~~~~~L~~l~l~~~~~ 255 (285)
++|++|.+.+.... .. +.++++|+.++++....
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77777777665431 11 55677777777766543
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.18 E-value=5.5e-05 Score=59.79 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=41.7
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
.+++|++|+|.+..++.- ....+..++.|++|+|.++.- ..+.- -...++|+.|.+.++. +..+.- ..++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQL 126 (208)
T ss_dssp TCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcC
Confidence 455566666655444321 111234556666666655421 11100 0122345555555543 322211 23555
Q ss_pred eEEEEecceee----eeecCCCceEEEEEEc
Q 023267 226 VSFEFSAGELI----VSFKHVPSLVEMSIEG 252 (285)
Q Consensus 226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~ 252 (285)
++|.+.+.... ..+..+++|+.+++.+
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 55555443221 1133455555555544
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.17 E-value=8.6e-05 Score=64.60 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE---eCCCceE
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI---NAPNLVS 227 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~ 227 (285)
+++|+.|+|.+..+++. ..+..+|.|++|++.++.- ..+.. -...++|+.|.+.++. +..+.. ..|+|+.
T Consensus 225 ~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV 299 (390)
T ss_dssp CSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCE
T ss_pred cccccEEECCCCCCccc---HHHcCCCCccEEECCCCcC-CCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCE
Confidence 45677777777776554 2466788888888887642 22211 1234567888888775 555543 3577888
Q ss_pred EEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 228 FEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 228 l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
|.+.+.... ..+..+++|+.+++++...... . +..+++|+.|+++.
T Consensus 300 L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~--~----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K----LSTHHTLKNLTLSH 348 (390)
T ss_dssp EECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C----CCTTCCCSEEECCS
T ss_pred EECCCCcceecCccccccCcCCEEECCCCcccee--C----chhhccCCEEEcCC
Confidence 877765432 2234567777777776554321 1 45677777777653
No 85
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.17 E-value=5.7e-06 Score=65.12 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=51.4
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEE
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFE 229 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~ 229 (285)
.+++|+.|+|.+..++. +...+..+|.|+.|++.++. +..+. ...++|+.|.
T Consensus 68 ~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~------------------------l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 68 GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ------------------------IASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE------------------------CCCHHHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc------------------------CCcCCccccCCCCCEEE
Confidence 45566666666666542 33334445666666665542 11110 0234555555
Q ss_pred Eecceee-----eeecCCCceEEEEEEccccchh-------hhHHhhhhcCCCcceEEE
Q 023267 230 FSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-------VYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 230 ~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~ll~~~~~L~~L~ 276 (285)
+.+.... ..+..+++|+.+++.+...... ..-....+..+++|+.|+
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5443321 1356778888888876543211 112234567788888775
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.17 E-value=1.7e-05 Score=70.60 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=16.1
Q ss_pred CccEEEeeeEEeChhH---HHHHHhcCCccceeecccC
Q 023267 155 SLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c 189 (285)
+|++|+|+++.+++.+ +...+..|+.|++|++.++
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 4555555544444433 2233334555555555544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.15 E-value=8.2e-06 Score=68.92 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCccEEEeeeEEeChhHHHHHH-hcCCccceeecccCCCcce------EEEeCCCCceeEEEEecCCCCCeEE----Ee
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLL-CYCPLLEVLTLKGAEKLIR------IRVSGPSLKLKYLELRDLPNLSNLE----IN 221 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll-~~cp~Le~L~L~~c~~~~~------~~i~~~~~~L~~L~i~~c~~l~~l~----i~ 221 (285)
+++|++|+|.+..+++..-..++ ..++.|++|+|.++.-... ..+. ..++|+.|.++++. +..+. -.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHHhcc
Confidence 35678888877765543222222 6677888888877642210 1111 24567888888775 33322 14
Q ss_pred CCCceEEEEeccee--------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 222 APNLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 222 ~p~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
.++|++|.+++... ...+..+++|+.++++.............++..+++|+.|+|+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 67788888776532 112246778888888766553322222334456667777766543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.15 E-value=5.7e-05 Score=61.65 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
.+++|++|+|++..++.-. ...+..+++|++|+|.++. +..+.- -...++|+.|.+.++. +..+.. ..++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNL 157 (251)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCC
Confidence 4566666666665544211 1224456666666666542 111110 0123456666666553 333321 23566
Q ss_pred eEEEEecceee----eeecCCCceEEEEEEccc
Q 023267 226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~ 254 (285)
+.|.+.+.... ..+..+++|+.+++++..
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66666554321 123455666666665443
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.13 E-value=5.8e-05 Score=63.13 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=63.6
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN 224 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 224 (285)
..+++|++|+|++..++. +...+..++.|+.|++.++.- ..+. .-...++|+.|.+.++. +..+.. ..++
T Consensus 74 ~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPK 149 (290)
T ss_dssp SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccC
Confidence 356777777777666542 222345667777777776531 1111 01223467777777664 433321 3466
Q ss_pred ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
|+.|.+.+.... -.+..+++|+.++++.......... +...++|+.|.|+
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLH 203 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeC
Confidence 777777655432 1234567777777776554322111 2344566666654
No 90
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.13 E-value=0.00018 Score=60.68 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=70.2
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~ 198 (285)
++++.|.+....-. ..+|..+ ..+++|++|+|++..+++. +...+..+++|++|++.++.-...+ .+.
T Consensus 101 ~~L~~L~Ls~n~l~------~~~p~~~---~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 101 TQLHYLYITHTNVS------GAIPDFL---SQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp TTCSEEEEEEECCE------EECCGGG---GGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CCCCEEECcCCeeC------CcCCHHH---hCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 56777776644311 1333332 2456777777776665421 1122455677777777665321110 111
Q ss_pred CCCCceeEEEEecCCC----------------------CCeE----EEeCCCceEEEEecceee---eeecCCCceEEEE
Q 023267 199 GPSLKLKYLELRDLPN----------------------LSNL----EINAPNLVSFEFSAGELI---VSFKHVPSLVEMS 249 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~----------------------l~~l----~i~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~ 249 (285)
...++|+.|.+.++.- +... .-..++|+.|.+.+.... ..+..+++|++++
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~ 250 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence 1111445555444320 1100 012455666665544321 1234566777777
Q ss_pred EEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 250 IEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 250 l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
++...... .+...+..+++|+.|+|+...
T Consensus 251 Ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 251 LRNNRIYG---TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCSSCCEE---CCCGGGGGCTTCCEEECCSSE
T ss_pred CcCCcccC---cCChHHhcCcCCCEEECcCCc
Confidence 76544321 112234567778877776543
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.12 E-value=0.0004 Score=63.30 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe---CCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS---GPSLKLKYLELRDLPNLSNLE---INAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~---~~~~~L~~L~i~~c~~l~~l~---i~~p~L 225 (285)
.+++|++|++.+..+....- ...+|.|++|++.++.-.....+. ...++|+.|.+.+|. +..+. ...++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L 398 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 398 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence 34555555555544322110 045666666666665321111111 134566777777664 33322 246777
Q ss_pred eEEEEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 226 VSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 226 ~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
++|.+.+.... ..+.++++|+.++++....... ....+..+++|+.|+|+...
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTTCE
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc---chhhhhcCCcCcEEECcCCc
Confidence 77777665432 2345677777777766443221 22345678888888876544
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.09 E-value=2.6e-05 Score=59.48 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=43.5
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE-----EeCCCce
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE-----INAPNLV 226 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~-----i~~p~L~ 226 (285)
+++|+.|+|.+..+++. ..+..++.|+.|++.++.-...+ .+....++|+.|.+.++. +..+. ...|+|+
T Consensus 48 l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCC
T ss_pred CCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCC
Confidence 44555555554444332 22344455555555444211100 001112344555554442 22221 1345666
Q ss_pred EEEEeccee---e----eeecCCCceEEEEEEccc
Q 023267 227 SFEFSAGEL---I----VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 227 ~l~~~~~~~---~----~~~~~~~~L~~l~l~~~~ 254 (285)
.|.+.+... . ..+..+++|+.+++....
T Consensus 124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666654432 1 145567788877776543
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.08 E-value=0.00019 Score=59.93 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLV 226 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 226 (285)
..+++|++|+|.+..++.-.. ...++.|+.|++.++.-..-...-...++|+.|.++++. +..+.. ..++|+
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQ 127 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCC
T ss_pred hcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCC
Confidence 456777777777666543221 156777777777765321111111234567777777764 444321 357788
Q ss_pred EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+|.+.+.... -.+..+++|+.++++........ ...+..+++|+.|+|+..
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP---AGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccC---HHHhcCcCCCCEEECCCC
Confidence 8887765432 12456788888888765543221 233567888888887643
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.07 E-value=0.00044 Score=63.80 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCceEEEEeccee--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 223 PNLVSFEFSAGEL--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 223 p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
++|+.|.+.+... ...+..+++|+.++|++...... ....+..+++|+.|+|+.
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISN 287 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECTT
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC---CHHHhcCccCCCEEECCC
Confidence 3455555544332 12345667777777776543221 112245677777777754
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.07 E-value=0.00013 Score=67.20 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=56.4
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEE---E-eCCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLE---I-NAPN 224 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~---i-~~p~ 224 (285)
..+++|++|+|++..++.-. ...+.++++|++|+|.++. +..+.-. ....+|++|.+.++. +..+. + ..++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 149 (635)
T ss_dssp TTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred hCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcc
Confidence 45677777777776543210 1124567777777777763 2222111 234567777777664 33332 1 3567
Q ss_pred ceEEEEeccee-----eeeecCCCceEEEEEEcccc
Q 023267 225 LVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYC 255 (285)
Q Consensus 225 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~ 255 (285)
|++|.+.+... +..+..+++|+.++++....
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 77777665432 12344567777777766543
No 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.05 E-value=0.00015 Score=64.37 Aligned_cols=122 Identities=21% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLV 226 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 226 (285)
+++|++|+|.+..+++. ....+..+++|++|+|.++.-. .+. .-...++|+.|.++++. +..+.. ..++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLE 350 (455)
T ss_dssp TSCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCC
T ss_pred ccCceEEEecCcccccc-chhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCC
Confidence 46788888887776543 2233567888888888877422 111 01134578888888875 555432 368888
Q ss_pred EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
.|.+.+.... ..+..+++|+.+++++....... ...+..+++|+.|+|+..
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCC
Confidence 8888776542 23567888888888875543221 223567888888887643
No 97
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.04 E-value=0.00019 Score=60.60 Aligned_cols=127 Identities=11% Similarity=0.050 Sum_probs=72.4
Q ss_pred CCCceEEEEeeCCCc-ccHHHHHHHHHhCCceEEEEEe-cCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHH
Q 023267 94 KSLQQLRICYPVNSD-YDVDSWVQFAVDKRVQRLELDF-SESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVL 171 (285)
Q Consensus 94 ~~l~~l~l~~~~~~~-~~~~~wl~~~~~~~v~~L~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l 171 (285)
..++.+.++...... ..+...+. .-++++.|.+.. ..-. ..+|..+ ..+++|++|+|++..++.. +
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~------~~~p~~l---~~l~~L~~L~Ls~n~l~~~-~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLV------GPIPPAI---AKLTQLHYLYITHTNVSGA-I 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEE------SCCCGGG---GGCTTCSEEEEEEECCEEE-C
T ss_pred ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCccc------ccCChhH---hcCCCCCEEECcCCeeCCc-C
Confidence 357777776543221 01112111 126899999873 3211 2345443 4679999999999887532 2
Q ss_pred HHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCe-EE--E-eCC-CceEEEEecc
Q 023267 172 HYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSN-LE--I-NAP-NLVSFEFSAG 233 (285)
Q Consensus 172 ~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~-l~--i-~~p-~L~~l~~~~~ 233 (285)
...+..+++|++|+|.++.-...+ ..-...++|+.|.+.++. +.. +. + ..+ +|+.|.+.+.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSS
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCC
Confidence 223677999999999987421111 001234679999998875 321 11 1 223 6777766554
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.03 E-value=0.00022 Score=66.11 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=41.7
Q ss_pred CceeEEEEecCCCCCeEEEeCCCceEEEEecceeeeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
++|+.|.++++. +..+.-..++|+.|.+++......-..+++|+.+++++...... ...+..+++|+.|+|+..
T Consensus 221 ~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~l----p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL----PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSC----CGGGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcC----CHHHhhccccCEEEecCC
Confidence 345566665553 44444445667777766654321111567777777776554321 122567788888877654
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.02 E-value=0.00044 Score=64.10 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=22.8
Q ss_pred CceeEEEEecCCCCCeEEEeCCCceEEEEecceeeeeecCCCceEEEEEEccc
Q 023267 202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (285)
++|++|.+++|. +..+.-..++|+.|.+.+......-..+++|+.++++...
T Consensus 141 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 141 PGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 344555555442 3332222344555544433321111334666666666543
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.001 Score=59.98 Aligned_cols=129 Identities=10% Similarity=0.175 Sum_probs=73.2
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHh--cCCccceeecccCCCcceE--EEe----CCC---------------------
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLC--YCPLLEVLTLKGAEKLIRI--RVS----GPS--------------------- 201 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~--~cp~Le~L~L~~c~~~~~~--~i~----~~~--------------------- 201 (285)
..+++|+.|++.+..+++..+..+.. .++.|++|++.+|.-.+.+ .+. ...
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~ 296 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence 45788888888888888776655443 3578999998876311000 000 111
Q ss_pred -----CceeEEEEecCCCCCeEE--EeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267 202 -----LKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP 270 (285)
Q Consensus 202 -----~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 270 (285)
.+++.|.+.++. +..+. ...++|++|.+++... +..+..+++|+.++++....... ..+...+..++
T Consensus 297 ~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l~ 374 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMK 374 (520)
T ss_dssp HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTCT
T ss_pred cccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhCC
Confidence 234555555543 22222 2457777777766543 22345677888888776554321 12233456667
Q ss_pred cceEEEEEEEe
Q 023267 271 QLRTLKLNLMA 281 (285)
Q Consensus 271 ~L~~L~L~~~~ 281 (285)
+|+.|+|+...
T Consensus 375 ~L~~L~Ls~N~ 385 (520)
T 2z7x_B 375 SLQQLDISQNS 385 (520)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 77777766443
No 101
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.00 E-value=0.00023 Score=65.54 Aligned_cols=119 Identities=15% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE-eCCCceE
Q 023267 150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVS 227 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~ 227 (285)
...+++|+.|++.+..++.-. -+..++.|++|++.+|.. ..+ .+ ..++|+.|.+.++.....+.+ ..|+|++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 354 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSY 354 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC--CCCccceeeccCCcCccchhhccCCCCCE
Confidence 346788999999888765432 366788999999998854 222 22 556789999998854444332 5789999
Q ss_pred EEEecceee------eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 228 FEFSAGELI------VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 228 l~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
+.+.+.... ..+..+++|+.++++........ ..+..+++|+.|+++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----ANFMGLEELQHLDFQ 407 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----CCCTTCTTCCEEECT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccch----hhccCCCCCCeeECC
Confidence 998876532 23567899999999865432111 223445555555544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.00 E-value=9.7e-05 Score=63.73 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
.+++|++|+|++..++.-.- ..+..++.|++|+|.++. +..+.- -...++|+.|.+.++. +..+.- ..++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 45667777766655432111 124456677777776653 222110 1123456666666654 333321 34566
Q ss_pred eEEEEecceee---e-ee---cCCCceEEEEEEcccc
Q 023267 226 VSFEFSAGELI---V-SF---KHVPSLVEMSIEGDYC 255 (285)
Q Consensus 226 ~~l~~~~~~~~---~-~~---~~~~~L~~l~l~~~~~ 255 (285)
+.|.+.+.... . .+ ..+++|+.++|+...+
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 66666554321 1 11 3456666666665443
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.00 E-value=7.4e-05 Score=59.79 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=50.7
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE----EeCCCce
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE----INAPNLV 226 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~ 226 (285)
.+++|++|+|.+..++.-. ...+.+++.|++|+|.++.-..-. ..-...++|+.|.++++. +..+. ...++|+
T Consensus 55 ~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCS
T ss_pred cCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCC
Confidence 4567777777665543311 112455677777777665321100 001123456666666654 33331 1346666
Q ss_pred EEEEeccee----eeeecCCCceEEEEEEcc
Q 023267 227 SFEFSAGEL----IVSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 227 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~ 253 (285)
.|.+.+... +..+..+++|+.+++++.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 666655433 123445666776666544
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.96 E-value=0.00031 Score=64.21 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=63.3
Q ss_pred CCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeE-EEeC-CCce
Q 023267 152 SFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNL-EINA-PNLV 226 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l-~i~~-p~L~ 226 (285)
.+++|+.|+|++..+++- .+...+..++.|+.|++.++.-...+ ..-...++|+.|.++++. +... .... ++|+
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~ 453 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVK 453 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCS
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCC
Confidence 455566666655555431 13333455666666666655321101 011122456666666664 2211 1111 5777
Q ss_pred EEEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 227 SFEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 227 ~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.|.+.+.... ..+..+++|+.++++.......... .+..+++|+.|+|+.
T Consensus 454 ~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHD 506 (562)
T ss_dssp EEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCS
T ss_pred EEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecC
Confidence 7777665432 2234677888888876554322111 356677788777654
No 105
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.96 E-value=3.3e-05 Score=67.06 Aligned_cols=160 Identities=15% Similarity=0.087 Sum_probs=107.6
Q ss_pred HHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-
Q 023267 117 FAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI- 195 (285)
Q Consensus 117 ~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~- 195 (285)
..+.++++++.+..+.-...+. ..+...+ ...+++|++|+|++..+++.++..+...+++|++|+|.+|. +++.
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~ 142 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVKC--TVVAAVL--GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA 142 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHHH--HHHHHHH--SSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred HHHHhhCCEEEecCCCCCHHHH--HHHHHHH--hhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence 3445789988876443211000 1111111 12357999999999999999998888888999999999984 2221
Q ss_pred ------EEeCCCCceeEEEEecCCCCCeEE--------EeCCCceEEEEecceee--------eeecCCCceEEEEEEcc
Q 023267 196 ------RVSGPSLKLKYLELRDLPNLSNLE--------INAPNLVSFEFSAGELI--------VSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 196 ------~i~~~~~~L~~L~i~~c~~l~~l~--------i~~p~L~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~ 253 (285)
.+.+...+|+.|.+.+|. +.... ...++|++|.+.+.... -.+..+++|++++|+..
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 112345679999999996 43311 14789999999876431 12456789999999987
Q ss_pred ccchh-hhHHhhhhcCCCcceEEEEEEEee
Q 023267 254 YCTYF-VYTLHQFSSFLPQLRTLKLNLMAV 282 (285)
Q Consensus 254 ~~~~~-~~~~~~ll~~~~~L~~L~L~~~~~ 282 (285)
..... ...+...+...++|+.|+|+...+
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 65432 345556677889999999876543
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.96 E-value=0.00026 Score=68.08 Aligned_cols=149 Identities=17% Similarity=0.075 Sum_probs=84.9
Q ss_pred CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267 94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY 173 (285)
Q Consensus 94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ 173 (285)
+.++.+.++........ ... ...-++++.|++..+.. ...++... ...+++|++|+|++..+.... ..
T Consensus 24 ~~l~~LdLs~N~i~~i~-~~~--~~~l~~L~~LdLs~n~~------~~~i~~~~--f~~L~~L~~L~Ls~N~l~~~~-p~ 91 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVT-ASS--FPFLEQLQLLELGSQYT------PLTIDKEA--FRNLPNLRILDLGSSKIYFLH-PD 91 (844)
T ss_dssp TTCCEEEEESCCCCEEC-SSS--CSSCCSCSEEEECTTCC------CCEECTTT--TSSCTTCCEEECTTCCCCEEC-TT
T ss_pred CCcCEEECCCCcCCccC-hhH--CcccccCeEEeCCCCCC------ccccCHHH--hcCCCCCCEEECCCCcCcccC-Hh
Confidence 45778888765432100 000 01125778887764421 12332221 346788999998887765431 22
Q ss_pred HHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeEEE-----eCCCceEEEEecceeee----eecC
Q 023267 174 LLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNLEI-----NAPNLVSFEFSAGELIV----SFKH 241 (285)
Q Consensus 174 ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l~i-----~~p~L~~l~~~~~~~~~----~~~~ 241 (285)
.+.++++|++|+|.+|.-...+ ..-...++|+.|.++++. +..+.. ..++|++|.+.+..... .+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 3567889999999887432211 111234578888888875 433322 46888888887764321 2222
Q ss_pred C--CceEEEEEEcccc
Q 023267 242 V--PSLVEMSIEGDYC 255 (285)
Q Consensus 242 ~--~~L~~l~l~~~~~ 255 (285)
+ ++|+.++++....
T Consensus 171 l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSL 186 (844)
T ss_dssp HHHCSSCCCEECCSBS
T ss_pred ccCCccceEECCCCcc
Confidence 3 7888888876543
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.93 E-value=6.6e-05 Score=61.24 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=85.5
Q ss_pred CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCC
Q 023267 150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAP 223 (285)
Q Consensus 150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p 223 (285)
...+++|++|+|++..+++.. ...+..++.|+.|+|.++.- ..+. .-...++|+.|.++++. +..+.. ..+
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 131 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT 131 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence 346899999999988765422 22356789999999988642 2211 11234679999998884 554432 368
Q ss_pred CceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 224 NLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 224 ~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
+|+.|.+.+.... -.+..+++|+.++|+........ ...+..+++|+.|+|+...
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSCC
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCc
Confidence 9999999876542 13567899999999876644321 1345778999999887543
No 108
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.91 E-value=0.00014 Score=67.06 Aligned_cols=38 Identities=24% Similarity=0.086 Sum_probs=19.1
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
.+++|++|++.+..+....-...+..+++|++|++.++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 45666666666554332111112445566666666554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.90 E-value=0.00014 Score=58.50 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLE---INAPNL 225 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~---i~~p~L 225 (285)
..+++|++|+|++..++.-. ...+..++.|+.|+|.++. +..+.- -...++|+.|.+.++. +..+. ...++|
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHL 137 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTC
T ss_pred hCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCC
Confidence 45677888888776653311 1234667788888887753 222111 1234567777777664 44332 145777
Q ss_pred eEEEEecceee----eeecCCCceEEEEEEccc
Q 023267 226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~ 254 (285)
+.|.+.+.... -.+..+++|+.+++.+..
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777665432 124557777777776543
No 110
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.83 E-value=0.00012 Score=60.39 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=86.3
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~ 198 (285)
++++.|.+..+. ...++... ...+++|++|+|++..++.... ..+..++.|++|++.++.-. ....+
T Consensus 52 ~~L~~L~l~~n~-------l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~- 120 (276)
T 2z62_A 52 PELQVLDLSRCE-------IQTIEDGA--YQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPI- 120 (276)
T ss_dssp TTCSEEECTTCC-------CCEECTTT--TTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCC-
T ss_pred cCCcEEECCCCc-------CCccCHHH--ccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhc-
Confidence 678888775432 12333321 3468899999999887654321 23567899999999887422 22122
Q ss_pred CCCCceeEEEEecCCCCCeEEE-----eCCCceEEEEecceeee----eecCCCceE----EEEEEccccchhhhHHhhh
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI-----NAPNLVSFEFSAGELIV----SFKHVPSLV----EMSIEGDYCTYFVYTLHQF 265 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i-----~~p~L~~l~~~~~~~~~----~~~~~~~L~----~l~l~~~~~~~~~~~~~~l 265 (285)
...++|+.|.+.++. +..+.+ ..++|++|.+.+..... .+..+++|+ +++++..........
T Consensus 121 ~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---- 195 (276)
T 2z62_A 121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---- 195 (276)
T ss_dssp TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT----
T ss_pred ccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc----
Confidence 234679999998875 444321 46899999988765321 233334444 677766544322111
Q ss_pred hcCCCcceEEEEEEEe
Q 023267 266 SSFLPQLRTLKLNLMA 281 (285)
Q Consensus 266 l~~~~~L~~L~L~~~~ 281 (285)
.....+|+.|+|+...
T Consensus 196 ~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 196 AFKEIRLKELALDTNQ 211 (276)
T ss_dssp SSCSCCEEEEECCSSC
T ss_pred ccCCCcccEEECCCCc
Confidence 1233478888887543
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.82 E-value=0.00031 Score=64.24 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=84.0
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcc--eE-EEeCCCCceeEEEEecCCCCCe-E----EEeC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLI--RI-RVSGPSLKLKYLELRDLPNLSN-L----EINA 222 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~--~~-~i~~~~~~L~~L~i~~c~~l~~-l----~i~~ 222 (285)
..+++|++|+|++..+++... ..+..++.|++|++.++.-.. .+ ..-...++|+.|.++++. +.. + ....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence 468999999999988876332 235789999999999874211 11 111344679999999886 332 2 2246
Q ss_pred CCceEEEEecceee-eeecCC-CceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 223 PNLVSFEFSAGELI-VSFKHV-PSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 223 p~L~~l~~~~~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
++|+.|.+.+.... ...... ++|+.++++....... ..-+..+++|+.|+|+...
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~i----p~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI----PKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCC----CTTTTSSCCCSEEECCSSC
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCccc----ChhhcCCCCCCEEECCCCC
Confidence 89999999876542 222233 6999999998665422 2223488999999987543
No 112
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.76 E-value=0.00027 Score=65.25 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=64.0
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE---eCCCceEE
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI---NAPNLVSF 228 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~l 228 (285)
++|+.|+|.+..+++. ..+..+|.|+.|+|.++.- ..+. .-...++|+.|.++++. +..+.. ..|+|+.|
T Consensus 232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVL 306 (597)
T ss_dssp SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEE
T ss_pred CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc-CCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEE
Confidence 4566666666665543 2356677777777777642 2111 01234567777777764 555443 25677777
Q ss_pred EEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 229 EFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 229 ~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.+.+.... ..+..+++|+.|+|++...... . +..+++|+.|+|+.
T Consensus 307 ~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~--~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K----LSTHHTLKNLTLSH 354 (597)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C----CCTTCCCSEEECCS
T ss_pred ECCCCCCCccCcccccCCCCCEEECCCCCCCCc--C----hhhcCCCCEEEeeC
Confidence 77655431 2234566777777765443221 1 45566777766653
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.72 E-value=0.00022 Score=57.01 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN 224 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~ 224 (285)
..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++.- ..+. +-...++|+.|.+.++. +..+.. ..++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHN 129 (220)
T ss_dssp TTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCC
Confidence 45677777777776654321 11245677778887776531 1111 01223567777777664 433321 3467
Q ss_pred ceEEEEecceee----eeecCCCceEEEEEEcc
Q 023267 225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~ 253 (285)
|+.|.+.+.... -.+..+++|+.+++.+.
T Consensus 130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 777777665431 12445677777777654
No 114
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.70 E-value=0.00033 Score=65.46 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=6.1
Q ss_pred cCCCcceEEEEE
Q 023267 267 SFLPQLRTLKLN 278 (285)
Q Consensus 267 ~~~~~L~~L~L~ 278 (285)
..+++|+.|+|+
T Consensus 581 ~~l~~L~~L~L~ 592 (680)
T 1ziw_A 581 NNQVSLKSLNLQ 592 (680)
T ss_dssp TTCTTCCEEECT
T ss_pred CCCCCCCEEECC
Confidence 344555555544
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.68 E-value=0.0001 Score=67.60 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=33.9
Q ss_pred CCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267 222 APNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 222 ~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L 277 (285)
.++|+.|.+++... +..++.+++|+.++|++............+...+|+|+.|++
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 45666666655432 234567788888888776544333334455666788887753
No 116
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.68 E-value=0.00064 Score=63.19 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeC---------CCCceeEEEEecCCCCCeEEE--
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG---------PSLKLKYLELRDLPNLSNLEI-- 220 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~---------~~~~L~~L~i~~c~~l~~l~i-- 220 (285)
.+++|++|+|++..++.- -..+...++.|++|+|.++.-. .+.... ...+|+.|.++++. +..+.-
T Consensus 431 ~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF 507 (636)
T ss_dssp CCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG
T ss_pred cCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh
Confidence 455788888888776521 2245567888888888876422 111000 01167788887774 443321
Q ss_pred ---eCCCceEEEEeccee---eeeecCCCceEEEEEEccc---cchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 221 ---NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY---CTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 221 ---~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
..|+|+.|.+.+... +..+..+++|+.++|+... .......+...+..+++|+.|+|+..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 456777777765443 2345567777777774311 00001111122345667777766543
No 117
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.65 E-value=0.00037 Score=65.10 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=43.4
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEE----EeCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLE----INAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L 225 (285)
.+++|++|+|++..++.-. ...+..|++|++|++.++.- ..+. .-....+|+.|.+.++. +..+. ...++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENL 147 (680)
T ss_dssp HCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTC
T ss_pred cccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCc-ccccCchhhcccccC
Confidence 3456666666555443211 01234556666666655421 1111 00123456666666553 22221 134556
Q ss_pred eEEEEecceee------eeecCCCceEEEEEEcc
Q 023267 226 VSFEFSAGELI------VSFKHVPSLVEMSIEGD 253 (285)
Q Consensus 226 ~~l~~~~~~~~------~~~~~~~~L~~l~l~~~ 253 (285)
++|.+.+.... +....+++|++++++..
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 66655543221 01123456666666543
No 118
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.63 E-value=5e-05 Score=59.10 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCCCccEEEeeeE-EeChhHHH---HHHhcCCccceeecccCC
Q 023267 152 SFSSLVSLRLIDV-DIPEEVLH---YLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 152 ~~~~L~~L~L~~~-~i~~~~l~---~ll~~cp~Le~L~L~~c~ 190 (285)
..+.|++|+|.++ .+++++.. ..+..++.|++|+|.+|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3456666666666 56665533 234455666666666553
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.59 E-value=0.0015 Score=50.05 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=70.0
Q ss_pred hcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeee---e-ecCCCceEEE
Q 023267 176 CYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIV---S-FKHVPSLVEM 248 (285)
Q Consensus 176 ~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~---~-~~~~~~L~~l 248 (285)
..|+.|++|++.++.- ..+ .+....++|+.|.++++. +..+. -..++|++|.+.+..... . +..+++|+.+
T Consensus 16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4689999999999742 222 222333489999999985 66653 146899999998765421 1 3678999999
Q ss_pred EEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+++........ . ...+..+++|+.|+++..
T Consensus 94 ~L~~N~i~~~~-~-~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 94 ILTNNSLVELG-D-LDPLASLKSLTYLCILRN 123 (176)
T ss_dssp ECCSCCCCCGG-G-GGGGGGCTTCCEEECCSS
T ss_pred ECCCCcCCcch-h-hHhhhcCCCCCEEEecCC
Confidence 99987653321 1 224578999999988753
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.55 E-value=0.0013 Score=60.17 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=21.9
Q ss_pred CceeEEEEecCCCCCeEEEeCCCceEEEEeccee---eeeecCCCceEEEEEEccc
Q 023267 202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~ 254 (285)
++|+.|.++++. +..+.-..++|+.|.+.+... +. +. ++|+.++|++..
T Consensus 140 ~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 140 ALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred ccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 345555555443 332222344555555544332 11 11 556666665543
No 121
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.50 E-value=0.00057 Score=65.75 Aligned_cols=126 Identities=14% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--C-------CCCceeEEEEecCCCCCeEEE---
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--G-------PSLKLKYLELRDLPNLSNLEI--- 220 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~-------~~~~L~~L~i~~c~~l~~l~i--- 220 (285)
+++|+.|+|++..++.- -..+...++.|+.|+|.++.- ..+.-. . .+++|+.|.+++|. +..+..
T Consensus 672 ~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~ 748 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFR 748 (876)
T ss_dssp CCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGS
T ss_pred CCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCC-CccchHHhh
Confidence 34788888888777621 234456789999999987632 211100 0 11268888888874 444331
Q ss_pred --eCCCceEEEEeccee---eeeecCCCceEEEEEEccc---cchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 221 --NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY---CTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 221 --~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
..|+|+.|.+.+... +..+..+++|+.++|+... .......+...+..+++|+.|+|+...
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 357788888776543 3345577888888886411 000011122234567777777776443
No 122
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.46 E-value=0.00081 Score=62.51 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhH----HHHH--HhcCCccceeecccCCCcc
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEV----LHYL--LCYCPLLEVLTLKGAEKLI 193 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~----l~~l--l~~cp~Le~L~L~~c~~~~ 193 (285)
++++.|.+..+.-. ..+|.. ...+++|++|+|++.. +++.. +..+ +..+++|++|++.++.-.
T Consensus 249 ~~L~~L~L~~n~l~------~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 249 KDLTDVEVYNCPNL------TKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TTCCEEEEECCTTC------SSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred CCCCEEEecCCcCC------ccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 68889998765422 234543 3467888889888887 76522 2222 234578888888776422
Q ss_pred eEE---EeCCCCceeEEEEecCC
Q 023267 194 RIR---VSGPSLKLKYLELRDLP 213 (285)
Q Consensus 194 ~~~---i~~~~~~L~~L~i~~c~ 213 (285)
.+. .-...++|+.|.+.++.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCc
Confidence 111 11123456666666553
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.36 E-value=0.00027 Score=55.71 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=14.6
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
++|++|+|.+..++.- ....+..++.|++|++.++
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCC
Confidence 3455555544443321 1112334455555555443
No 124
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.0012 Score=63.66 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=31.2
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eCh----hHHHHH---HhcCCccceeecccC
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPE----EVLHYL---LCYCPLLEVLTLKGA 189 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~----~~l~~l---l~~cp~Le~L~L~~c 189 (285)
++++.|.+..+.-. -.+|..+ ..+++|+.|+|++.. +++ ..+..+ +..+|+|+.|+|.++
T Consensus 491 ~~L~~L~Ls~N~l~------~~iP~~l---~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 491 KDLTDVELYNCPNM------TQLPDFL---YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTCCEEEEESCTTC------CSCCGGG---GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CCCCEEECcCCCCC------ccChHHH---hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 67888888765422 2334322 245666666666665 544 112221 133446666666554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.24 E-value=0.0011 Score=49.14 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=69.7
Q ss_pred cCCccceeecccCCCc-ceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee----eeecCCCceEEE
Q 023267 177 YCPLLEVLTLKGAEKL-IRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI----VSFKHVPSLVEM 248 (285)
Q Consensus 177 ~cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l 248 (285)
..+.|++|++.+|.-. ..+ ..-...++|+.|.+.+|. +..+. ...++|++|.+++.... ..+..+++|+.+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3488999999998532 122 122445789999999885 55442 24689999999876542 234468999999
Q ss_pred EEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+++....... .....+..+++|+.|+++..
T Consensus 94 ~ls~N~i~~~--~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 94 NLSGNKIKDL--STIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ECTTSCCCSH--HHHGGGGGCTTCCEEECTTC
T ss_pred ECCCCcCCCh--HHHHHHhhCCCCCEEeCcCC
Confidence 9998665332 22245688999999998754
No 126
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.23 E-value=0.00017 Score=61.26 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 222 APNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 222 ~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.++|++|.+.+.... ..+..+++|++++++....... ...+..+++|+.|+++
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----p~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV----PAGLPDLKLLQVVYLH 272 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC----CTTGGGCTTCCEEECC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec----ChhhhcCccCCEEECC
Confidence 345555555443221 1234455555555554332211 1113445555555554
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.13 E-value=0.0018 Score=59.49 Aligned_cols=119 Identities=23% Similarity=0.268 Sum_probs=53.0
Q ss_pred CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267 155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNLVSF 228 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l 228 (285)
++++|+|++-.|+.-. ..-+.++++|+.|+|++|. +..+.-. ...++|++|.++++. ++.+.. ..++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 4566666554432210 0113445666666666552 2211110 123455666666553 444432 23556666
Q ss_pred EEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 229 EFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 229 ~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.+.+... ...++++++|++++++...... ......+..+++|+.|+|+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCcccc--CCCchhhccchhhhhhccc
Confidence 5554432 1234555666666665433221 1111223445555555554
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.77 E-value=0.002 Score=57.38 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=29.5
Q ss_pred CceeEEEEecCCCCCeEEEeCCCceEEEEecceee--eeecCCCceEEEEEEccc
Q 023267 202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~ 254 (285)
++|+.|.+.++. +..+.-..++|++|.+.+.... ..++.+++|+.++++...
T Consensus 195 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 195 PFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCc
Confidence 456666666553 3333323456777776654321 135567778888877644
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.71 E-value=0.0044 Score=55.11 Aligned_cols=33 Identities=24% Similarity=0.146 Sum_probs=15.7
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
++|++|++++..++. +.. +..++.|++|++.++
T Consensus 215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCC
Confidence 355555555554431 111 344555555555543
No 130
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=95.67 E-value=0.00092 Score=56.71 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=17.4
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
.+++|++|+|.+..++... ...+..++.|++|++.++
T Consensus 76 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSS
T ss_pred CCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCC
Confidence 4555555555554443211 111344555555555554
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.62 E-value=0.0069 Score=55.47 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=50.1
Q ss_pred CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEecce
Q 023267 155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGE 234 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~ 234 (285)
+|++|+|++..++. +.. .+++|+.|+|+++.- .. +....++|+.|.++++. +..+..-.++|+.|.+.+..
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~--lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL-TM--LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC-SC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc-Cc--CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC
Confidence 56666666555433 111 456666666665531 11 11123456666666664 32221112666666665543
Q ss_pred ee-e-eecCCCce-------EEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 235 LI-V-SFKHVPSL-------VEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 235 ~~-~-~~~~~~~L-------~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.. + .+. .+| +.+++++..+...... +..+++|+.|+|+.
T Consensus 192 L~~lp~~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 192 LESLPAVP--VRNHHSEETEIFFRCRENRITHIPEN----ILSLDPTCTIILED 239 (571)
T ss_dssp CSSCCCCC----------CCEEEECCSSCCCCCCGG----GGGSCTTEEEECCS
T ss_pred CCchhhHH--HhhhcccccceEEecCCCcceecCHH----HhcCCCCCEEEeeC
Confidence 21 0 011 144 6666665443322111 22356666666553
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.46 E-value=0.0022 Score=51.02 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=61.3
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVS 227 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 227 (285)
++|+.|+|.+..++.-. ...+..++.|+.|+|.++.- ..+. .-...++|+.|.++++. +..+.- ..++|+.
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence 46777777665543211 11245567777777766531 1110 01123456677776664 433321 3466777
Q ss_pred EEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 228 FEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
|.+.+.... ..+..+++|+.++|+......... ..+..+++|+.|+|+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLA 160 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeC
Confidence 776655432 234456777777776654332211 223456667766664
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.30 E-value=0.0037 Score=48.52 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=61.5
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVS 227 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 227 (285)
++|++|+|.+..++.-.-...+...+.|++|+|.++.- ..+. .-...++|+.|.+++.. +..+.. ..++|++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 47888888877764422222356778888888877632 1110 01123567888887774 544432 3578888
Q ss_pred EEEecceee----eeecCCCceEEEEEEccc
Q 023267 228 FEFSAGELI----VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~ 254 (285)
|.+.+.... ..+..+++|+.+++++..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 888766542 235678889999887654
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.16 E-value=0.0032 Score=50.40 Aligned_cols=119 Identities=16% Similarity=0.069 Sum_probs=64.7
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVS 227 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~ 227 (285)
++|++|+|++..++... ...+..++.|+.|+|.++.- ..+.- -...++|+.|.++++. +..+.- ..++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence 66777777776654321 12245667777777776532 22111 1233567777777663 444321 3567777
Q ss_pred EEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 228 FEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 228 l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
|.+.+.... ..+..+++|+.++|+......... ..+..+++|+.|+|+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECT
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEee
Confidence 777655432 234456777777776654332111 234566777766654
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.15 E-value=0.031 Score=47.16 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCce-
Q 023267 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNLV- 226 (285)
Q Consensus 154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L~- 226 (285)
.+++.+.+.+. +...++..+...|+.|+.|+|.++. +..+.-. ..+.+|+.|.+.+- +..|.- .+++|+
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence 44555656543 5556677777789999999998753 2222111 23456788877652 444442 567888
Q ss_pred EEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267 227 SFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 227 ~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 276 (285)
.+.+.+... ...+.+|++|+++.+.......... ..+.+|++|+.+.
T Consensus 278 ~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGD---ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred EEEEcccceEEchhhhhCCccCCEEEeCCCccCccch---hhhcCCcchhhhc
Confidence 888876432 2346789999999997555433221 2357899999875
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.13 E-value=0.02 Score=48.33 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=46.8
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCC--CCCC------cee-----ecCccccCCCC--------C
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESK--TEGH------ELH-----TFSPYFKTTSS--------F 153 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~--~~~~------~~~-----~~p~~~~~~~~--------~ 153 (285)
.++.+.+...... .--.++... .++++.|++....-. .... ... .+|...| .+ |
T Consensus 26 ~l~~L~l~g~i~~--~~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF--~~~~~~~~~g~ 100 (329)
T 3sb4_A 26 SITHLTLTGKLNA--EDFRHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAF--SNVVNGVTKGK 100 (329)
T ss_dssp HCSEEEEEEEECH--HHHHHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTT--EEEETTEEEEC
T ss_pred ceeEEEEeccccH--HHHHHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHh--ccccccccccc
Confidence 3778888754321 111223221 368999999755422 0000 001 2333322 34 8
Q ss_pred CCccEEEeeeEE---eChhHHHHHHhcCCccceeecccC
Q 023267 154 SSLVSLRLIDVD---IPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 154 ~~L~~L~L~~~~---i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
++|++|.|.+ . |++.. +.+|++|++|.+...
T Consensus 101 ~~L~~l~L~~-~i~~I~~~a----F~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAA----FKGCDNLKICQIRKK 134 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred CCCcEEECCc-cccchhHHH----hhcCcccceEEcCCC
Confidence 8999999976 4 44443 467999999999653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.12 E-value=0.00039 Score=54.43 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=61.5
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEe
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFS 231 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~ 231 (285)
.+++|++|+|++..+++ +. -+..++.|+.|++.++. +.. +....-..|+|++|.+.
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~------l~~---------------l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL------IKK---------------IENLDAVADTLEELWIS 101 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE------ECS---------------CSSHHHHHHHCSEEEEE
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC------ccc---------------ccchhhcCCcCCEEECc
Confidence 45667777777666654 22 34456666666666541 111 11111124778888877
Q ss_pred cceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 232 AGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 232 ~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
+.... ..+..+++|+.++++....... .....+..+++|+.|+++..
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~--~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEEECCCH--HHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCcCCccccCCCCCEEECCCCcCCch--hHHHHHhcCCCCCEEEecCC
Confidence 65431 1356789999999987664332 11134678999999998753
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.08 E-value=0.0027 Score=50.57 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=51.3
Q ss_pred CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267 155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSF 228 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l 228 (285)
.+++|+|++..++...-...+..++.|+.|+|.++. +..+.- -...++|+.|.++++. +..+.- ..++|++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEE
Confidence 455555555444332111123455666666665542 111110 0122345555555553 332221 24555666
Q ss_pred EEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 229 EFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 229 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.+.+.... ..+.++++|+.++|+........ ...+..+++|+.|+|+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLL 161 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEec
Confidence 55544321 22445556666666544332211 1123445555555554
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.05 E-value=0.003 Score=54.28 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=15.2
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c 189 (285)
.+++|++|+|++..++.-. ...+..+++|+.|+|.++
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp TCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCCC
Confidence 3445555555444432110 112334455555555443
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=94.69 E-value=0.005 Score=46.97 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLV 226 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 226 (285)
.++|++|++.+..++.- ....+..++.|++|++.++. +..+.- -...++|+.|.+.++. +..+.- ..++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccC
Confidence 36778888777665431 11234667788888887753 221110 1233567777777664 443321 347778
Q ss_pred EEEEecceee----eeecCCCceEEEEEEcccc
Q 023267 227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYC 255 (285)
Q Consensus 227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~ 255 (285)
+|.+.+.... ..+..+++|+.+++++..+
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 8877665431 1235678888888876543
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.46 E-value=0.0036 Score=59.09 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267 151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLE---INAPNL 225 (285)
Q Consensus 151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L 225 (285)
..+++|+.|+|++..+.. +..-+..++.|+.|+|.++.- ..+ .+ ....+|+.|.++++. +..+. ...++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~-~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSL-TELPAEI-KNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp -CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCC-SCCCGGG-GGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred ccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcC-cccChhh-hCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 356888888888877642 221233688889998887642 211 11 234568888888875 44432 145788
Q ss_pred eEEEEeccee---eeeecCCCceEEEEEEccccc
Q 023267 226 VSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCT 256 (285)
Q Consensus 226 ~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~ 256 (285)
++|.+.+... +..++.+++|+.|+|++..+.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 8888876543 334667888888888776553
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.89 E-value=0.014 Score=45.25 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=67.1
Q ss_pred CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLV 226 (285)
Q Consensus 153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~ 226 (285)
.++|++|+|.+..++. +...+..++.|+.|+|.++.- ..+.- -...++|+.|.+++.. +..+.- ..++|+
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence 4689999999888753 223577899999999998642 22111 1234578999998875 555432 358899
Q ss_pred EEEEecceee----eeecCCCceEEEEEEccc
Q 023267 227 SFEFSAGELI----VSFKHVPSLVEMSIEGDY 254 (285)
Q Consensus 227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~ 254 (285)
.|.+.+.... -.+..+++|+.+++++..
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9988876542 135568899999987653
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.78 E-value=0.0083 Score=46.62 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267 121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S 198 (285)
Q Consensus 121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~ 198 (285)
+++++|.+.... .-.+|.. ...+++|++|+|++..++.-. ...+.+++.|++|+|.++. +..+.- -
T Consensus 31 ~~l~~L~L~~n~-------i~~ip~~---~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQ-------FTLVPKE---LSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSC-------CCSCCGG---GGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred CCCCEEECCCCc-------CchhHHH---hhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 577777765432 1234432 346789999999988765422 1235678999999998864 222111 1
Q ss_pred CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEeccee
Q 023267 199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL 235 (285)
Q Consensus 199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~ 235 (285)
...++|+.|.+.+.. +..+.- ..++|+.+.+.+...
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 234678899988875 544432 357899998876543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=93.73 E-value=0.016 Score=44.07 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=66.0
Q ss_pred CCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267 178 CPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE 247 (285)
Q Consensus 178 cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~ 247 (285)
.+.|++|++.++. +..+.- -...++|+.|.+.++. +..+.- ..++|+.|.+.+.... ..+..+++|+.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 4799999999864 222111 1234679999999885 554432 4689999999876542 12467899999
Q ss_pred EEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 248 MSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 248 l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
++++........ ...+..+++|+.|+|+.
T Consensus 105 L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 105 LALDTNQLKSVP---DGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp EECCSSCCSCCC---TTTTTTCTTCCEEECCS
T ss_pred EECcCCcceEeC---HHHhcCCcccCEEEecC
Confidence 999876654221 23356789999998864
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.36 E-value=0.0084 Score=56.61 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEE---EeCCCce
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLE---INAPNLV 226 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~ 226 (285)
.+++|++|+|++..++ .+..-+..++.|+.|+|+++.- ..+ .+ ....+|+.|.+.++. +..+. -..++|+
T Consensus 245 ~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~-~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAEL-GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQ 319 (727)
T ss_dssp GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSG-GGGTTCSEEECCSSC-CCCCCSSTTSCTTCC
T ss_pred CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhh-cCCCCCCEEECCCCC-CCccChhhhcCCCcc
Confidence 3455666666555543 1222234556666666655431 111 01 112345555555553 33221 1345555
Q ss_pred EEEEecc
Q 023267 227 SFEFSAG 233 (285)
Q Consensus 227 ~l~~~~~ 233 (285)
.|.+.+.
T Consensus 320 ~L~L~~N 326 (727)
T 4b8c_D 320 FLGVEGN 326 (727)
T ss_dssp CEECTTS
T ss_pred EEeCCCC
Confidence 5555443
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=93.13 E-value=0.042 Score=46.75 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCC
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLP 213 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~ 213 (285)
++++|++|+|++..+.+.-=...+.+++.|+++.+.+++.+..+.- -...++|+.|.+.++.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 4566666666654321100001234455555555444444433211 1123456666666553
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=92.84 E-value=0.041 Score=42.47 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCccceeecccCCCcceEE---EeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceE
Q 023267 178 CPLLEVLTLKGAEKLIRIR---VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLV 246 (285)
Q Consensus 178 cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~ 246 (285)
.+.|++|++.+..- ..+. +-...++|+.|.++++. +..+.- ..++|+.|.+.+.... ..+.++++|+
T Consensus 28 ~~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 28 PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 35899999998642 2221 12234679999999885 555431 4689999999876542 2366789999
Q ss_pred EEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267 247 EMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279 (285)
Q Consensus 247 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~ 279 (285)
.++++........ ...+..+++|+.|+|+.
T Consensus 106 ~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 106 TLNLYDNQISCVM---PGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EEECCSSCCCEEC---TTSSTTCTTCCEEECTT
T ss_pred EEECCCCcCCeeC---HHHhhcCCCCCEEEeCC
Confidence 9999986654321 12356788999998764
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.62 E-value=0.06 Score=46.93 Aligned_cols=12 Identities=17% Similarity=-0.067 Sum_probs=7.2
Q ss_pred CCCCCccEEEee
Q 023267 151 SSFSSLVSLRLI 162 (285)
Q Consensus 151 ~~~~~L~~L~L~ 162 (285)
.+|++|+.+.|.
T Consensus 177 ~~c~~L~~l~l~ 188 (401)
T 4fdw_A 177 YYCYNLKKADLS 188 (401)
T ss_dssp TTCTTCCEEECT
T ss_pred hCcccCCeeecC
Confidence 355666666664
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=92.53 E-value=0.074 Score=45.22 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=93.3
Q ss_pred CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHH
Q 023267 95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHY 173 (285)
Q Consensus 95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ 173 (285)
.++.+.++...... +..- .+..-++++.|.+....-. -.+|...| .++++|+++...+.. +..- -..
T Consensus 31 ~l~~L~Ls~N~i~~--i~~~-~f~~l~~L~~L~Ls~N~i~------~~i~~~~f--~~L~~l~~~l~~~~N~l~~l-~~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTKLRV--IQKG-AFSGFGDLEKIEISQNDVL------EVIEADVF--SNLPKLHEIRIEKANNLLYI-NPE 98 (350)
T ss_dssp TCSEEEEESCCCSE--ECTT-SSTTCTTCCEEEEECCTTC------CEECTTSB--CSCTTCCEEEEEEETTCCEE-CTT
T ss_pred CCCEEEccCCcCCC--cCHH-HHcCCCCCCEEECcCCCCC------CccChhHh--hcchhhhhhhcccCCccccc-Cch
Confidence 47788877543321 1100 0111268888888754321 22343322 356676665444332 2210 012
Q ss_pred HHhcCCccceeecccCCCcceEEE-eCCCCceeEEEEecCCCCCeEEEe-----CCCceEEEEecceeee---eecCCCc
Q 023267 174 LLCYCPLLEVLTLKGAEKLIRIRV-SGPSLKLKYLELRDLPNLSNLEIN-----APNLVSFEFSAGELIV---SFKHVPS 244 (285)
Q Consensus 174 ll~~cp~Le~L~L~~c~~~~~~~i-~~~~~~L~~L~i~~c~~l~~l~i~-----~p~L~~l~~~~~~~~~---~~~~~~~ 244 (285)
.+..+++|+.|++.++.-...... .....++..|.+.++..+..+... ...++.+.+.+..... .+...++
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 356789999999988642111111 113456778888887666665432 3467888887765422 2234577
Q ss_pred eEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 245 LVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 245 L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
|+++.+.... ..... ...+..+++|+.|+|+...
T Consensus 179 L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 179 LDELNLSDNNNLEELP---NDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSC
T ss_pred hhHHhhccCCcccCCC---HHHhccCcccchhhcCCCC
Confidence 8888886422 22221 1235778999999987543
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=89.69 E-value=0.16 Score=46.34 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=47.6
Q ss_pred CceeEEEEecCCCCCeEE---EeCCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267 202 LKLKYLELRDLPNLSNLE---INAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL 275 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 275 (285)
++|+.|.++++. +..+. ...++|+.|.+++... + .++.+++|+.|+|++....... ....+..+++|+.|
T Consensus 463 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEE
T ss_pred ccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEE
Confidence 467778777774 44332 1467888888776543 3 5677888888888876543321 01234678888888
Q ss_pred EEEEE
Q 023267 276 KLNLM 280 (285)
Q Consensus 276 ~L~~~ 280 (285)
+|+..
T Consensus 539 ~L~~N 543 (567)
T 1dce_A 539 NLQGN 543 (567)
T ss_dssp ECTTS
T ss_pred EecCC
Confidence 87643
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.25 E-value=0.31 Score=42.08 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=27.1
Q ss_pred eCCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267 221 NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM 280 (285)
Q Consensus 221 ~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~ 280 (285)
.|.+|+++.+..... ...+.+|.+|+++.+.+....+ .....+.+|+.+.+.-.
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH------HTCBCCCCC--------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCCC
Confidence 356677777654332 2346678888888887532111 22466778887776543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=86.24 E-value=0.38 Score=41.79 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=18.0
Q ss_pred CccEEEeee-EE-eChhHHHHHHhcCCccceeeccc
Q 023267 155 SLVSLRLID-VD-IPEEVLHYLLCYCPLLEVLTLKG 188 (285)
Q Consensus 155 ~L~~L~L~~-~~-i~~~~l~~ll~~cp~Le~L~L~~ 188 (285)
+|+++.|.+ +. +++.. +.+|++|+.+++..
T Consensus 158 ~L~~i~lp~~l~~I~~~a----F~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDI----FYYCYNLKKADLSK 189 (401)
T ss_dssp CCCEEECCTTCCEECSST----TTTCTTCCEEECTT
T ss_pred CceEEEeCCCccEehHHH----hhCcccCCeeecCC
Confidence 466666654 11 33332 46788888888864
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=84.86 E-value=0.083 Score=43.29 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=24.8
Q ss_pred CCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccC
Q 023267 152 SFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGA 189 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c 189 (285)
.+|+|+.|+|++-.+++- .+..++..+|+|+.|+|++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 467777777777766542 24445566777777777653
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=84.35 E-value=0.2 Score=37.64 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267 178 CPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE 247 (285)
Q Consensus 178 cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~ 247 (285)
.+.|+.|+|.+..- ..+. .-....+|+.|.+++.. +..+.- ..++|+.|.+.+.... -.+..+++|+.
T Consensus 29 ~~~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 29 PTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 37899999987632 1111 01233578888888775 554432 4678888888776542 13567888999
Q ss_pred EEEEcccc
Q 023267 248 MSIEGDYC 255 (285)
Q Consensus 248 l~l~~~~~ 255 (285)
++|++..+
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 98887543
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=83.84 E-value=0.26 Score=37.27 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=50.3
Q ss_pred CCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267 178 CPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE 247 (285)
Q Consensus 178 cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~ 247 (285)
.+.|+.|+|.+..- ..+ ..-...++|+.|.+++.. +..+.- ..++|++|.+.+.... -.+..+++|+.
T Consensus 32 ~~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 32 PTDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp CTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEEeCCCCc-cccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 38899999988642 111 111234578899998874 555532 4588999988776542 12567889999
Q ss_pred EEEEcccc
Q 023267 248 MSIEGDYC 255 (285)
Q Consensus 248 l~l~~~~~ 255 (285)
++|++..+
T Consensus 110 L~L~~N~~ 117 (174)
T 2r9u_A 110 IYLYNNPW 117 (174)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCc
Confidence 99987654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=83.19 E-value=0.58 Score=35.69 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=28.0
Q ss_pred CCCCccEEEeeeEEeChhHH---HHHHhcCCccceeecccCC
Q 023267 152 SFSSLVSLRLIDVDIPEEVL---HYLLCYCPLLEVLTLKGAE 190 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l---~~ll~~cp~Le~L~L~~c~ 190 (285)
..++|++|+|++..+++++. ...+..++.|++|+|.++.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 35778888888888887764 3445667788888887763
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.62 E-value=0.22 Score=38.75 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=55.9
Q ss_pred CCCCccEEEeeeE-EeChhHHH---HHHhcCCccceeecccCCCcc--eEEEeC---CCCceeEEEEecCCCCCeEEEeC
Q 023267 152 SFSSLVSLRLIDV-DIPEEVLH---YLLCYCPLLEVLTLKGAEKLI--RIRVSG---PSLKLKYLELRDLPNLSNLEINA 222 (285)
Q Consensus 152 ~~~~L~~L~L~~~-~i~~~~l~---~ll~~cp~Le~L~L~~c~~~~--~~~i~~---~~~~L~~L~i~~c~~l~~l~i~~ 222 (285)
.-+.|++|+|.+. .|++++.. ..+..-..|++|+|.+|.--. ...|.. ....|+.|.+.+.. +..-.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~- 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA- 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH-
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH-
Confidence 3456777777765 57666533 334455677777777653110 000100 11235555555442 1110000
Q ss_pred CCceEEEEecceeeeeecCCCceEEEEEEcc---ccc-hhhhHHhhhhcCCCcceEEEEEEEe
Q 023267 223 PNLVSFEFSAGELIVSFKHVPSLVEMSIEGD---YCT-YFVYTLHQFSSFLPQLRTLKLNLMA 281 (285)
Q Consensus 223 p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~---~~~-~~~~~~~~ll~~~~~L~~L~L~~~~ 281 (285)
...-.+.....|++++|+.. .+. ....++.+.+..-+.|+.|++++..
T Consensus 117 -----------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 -----------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp -----------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred -----------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 00112334556777777532 111 1123556666667777777776654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=78.38 E-value=0.92 Score=39.02 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267 152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNL 225 (285)
Q Consensus 152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L 225 (285)
.++.|+.+.+....+.+.. ..+|..|+.+.+... +..+.-. ..+.+|+.+.+..- ++.|.- .|.+|
T Consensus 274 ~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTC
T ss_pred cccccceeccCceeecccc----ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCC
Confidence 4455555555554444432 345777777766431 1111101 12334555544311 233321 35677
Q ss_pred eEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267 226 VSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL 275 (285)
Q Consensus 226 ~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 275 (285)
+++.+..... ...+.+|++|+++.+... ..... .-+.+|++|+..
T Consensus 346 ~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~~~~----~~F~~c~~L~~I 393 (394)
T 4fs7_A 346 SNINFPLSLRKIGANAFQGCINLKKVELPKR-LEQYR----YDFEDTTKFKWI 393 (394)
T ss_dssp CEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GGGGG----GGBCTTCEEEEE
T ss_pred CEEEECccccEehHHHhhCCCCCCEEEECCC-CEEhh----heecCCCCCcEE
Confidence 7776654432 234678999999999753 22222 235788888864
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.86 E-value=2.2 Score=36.55 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=34.3
Q ss_pred eCCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 221 NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 221 ~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
.|.+|+++.+..... ...+.+|.+|+++.+...-...... .+.+|++|+.+++.
T Consensus 318 ~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGAN----AFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTT----TBTTCTTCCEEEEE
T ss_pred CCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehHH----HhhCCCCCCEEEEC
Confidence 356777777754332 2345679999999886431122222 35789999998875
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.70 E-value=1.8 Score=37.20 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=33.2
Q ss_pred CCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267 222 APNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN 278 (285)
Q Consensus 222 ~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~ 278 (285)
|.+|+++.+..... ...+.+|.+|+++.|-..--.....+ +.+|++|+.+++.
T Consensus 310 c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~ 365 (394)
T 4gt6_A 310 CISLKSIDIPEGITQILDDAFAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYS 365 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEES
T ss_pred CCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEEC
Confidence 56677666654322 23466789999999864221222333 4789999988764
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=71.01 E-value=1.1 Score=33.58 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=52.9
Q ss_pred CceeEEEEecCCCCCeEE----EeCCCceEEEEecceeee----eecCCCceEEEEEEccccchhhhHHhhhhcCCCcce
Q 023267 202 LKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGELIV----SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLR 273 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~ 273 (285)
.+++.|.+++.. +..+. -..++|++|.+.+..... .+.++++|+.++|+........ ...+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP---RGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC---HHHhccccCCC
Confidence 468889998875 55442 246899999998775421 2467899999999986654322 13357789999
Q ss_pred EEEEEEE
Q 023267 274 TLKLNLM 280 (285)
Q Consensus 274 ~L~L~~~ 280 (285)
.|+|+..
T Consensus 109 ~L~L~~N 115 (174)
T 2r9u_A 109 HIYLYNN 115 (174)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9988643
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=70.65 E-value=2.6 Score=35.27 Aligned_cols=60 Identities=17% Similarity=-0.024 Sum_probs=32.3
Q ss_pred CCCCCccEEEeee-EEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecC
Q 023267 151 SSFSSLVSLRLID-VDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDL 212 (285)
Q Consensus 151 ~~~~~L~~L~L~~-~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c 212 (285)
..+++|++|+|++ -.++.-. ...+.++++|+.|+|++.. +..+.- -...++|+.|.+++.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred CCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 3567788888875 4433211 1124567888888887763 222110 012345666666654
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=70.56 E-value=1.1 Score=33.44 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred CceeEEEEecCCCCCeEE----EeCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcce
Q 023267 202 LKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLR 273 (285)
Q Consensus 202 ~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~ 273 (285)
.+++.|.+.+.. +..+. ...++|++|.+.+.... -.+.++++|+.++|+......... ..+..+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR---GAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH---HHhcCCCCCC
Confidence 468889998875 55542 24689999999877542 224678999999999866543221 2357789999
Q ss_pred EEEEEEE
Q 023267 274 TLKLNLM 280 (285)
Q Consensus 274 ~L~L~~~ 280 (285)
.|+|+..
T Consensus 106 ~L~L~~N 112 (170)
T 3g39_A 106 HIWLLNN 112 (170)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9988743
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.11 E-value=1.7 Score=36.91 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=14.2
Q ss_pred CCCceEEEEeccee----eeeecCCCceEEEEEE
Q 023267 222 APNLVSFEFSAGEL----IVSFKHVPSLVEMSIE 251 (285)
Q Consensus 222 ~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~ 251 (285)
|++|+.+.+.+... ...+.+|.+|+++.|.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34555555543211 1234456666666654
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=70.06 E-value=1.2 Score=37.33 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=52.2
Q ss_pred HhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceeee----eecCCCc
Q 023267 175 LCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELIV----SFKHVPS 244 (285)
Q Consensus 175 l~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~~----~~~~~~~ 244 (285)
+..+++|++|+|.+.+.+..+.- -....+|+.|.+++.. +..+.- ..++|+.|.+++..... .+...+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence 67788899999987555554431 1234678999998874 666542 46889999888765421 122233
Q ss_pred eEEEEEEcccc
Q 023267 245 LVEMSIEGDYC 255 (285)
Q Consensus 245 L~~l~l~~~~~ 255 (285)
|+.|+|....+
T Consensus 105 L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 LQELVLSGNPL 115 (347)
T ss_dssp CCEEECCSSCC
T ss_pred ceEEEeeCCCc
Confidence 88888876543
No 166
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=63.39 E-value=1.7 Score=35.42 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=20.6
Q ss_pred ceEEEEEEccccchh----hhHHhhhhcCCCcceEEE
Q 023267 244 SLVEMSIEGDYCTYF----VYTLHQFSSFLPQLRTLK 276 (285)
Q Consensus 244 ~L~~l~l~~~~~~~~----~~~~~~ll~~~~~L~~L~ 276 (285)
+|++|.|.+...... ..-...++..+|+|+.|+
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 788888876554321 111235677889998774
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=47.43 E-value=7.4 Score=29.99 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=16.2
Q ss_pred CccEEEeeeEEeChhH---HHHHHhcCCccceeeccc
Q 023267 155 SLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKG 188 (285)
Q Consensus 155 ~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~ 188 (285)
.|+.|+|++..+++.+ +...+.....|++|+|.+
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 4555555555554444 333344445555555544
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=38.71 E-value=15 Score=30.88 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=31.2
Q ss_pred CCCceEEEEecceee---eeecCCCceEEEEEEccccchh-hhHHhhhhcCCCcceEEEE
Q 023267 222 APNLVSFEFSAGELI---VSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLKL 277 (285)
Q Consensus 222 ~p~L~~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~L 277 (285)
+.+|+.+.+...... ..+.+|++|+++.+........ ..+ +.+|++|+.+.|
T Consensus 262 ~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~l 317 (379)
T 4h09_A 262 CTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEEC
T ss_pred eehhccccccccceeccccccccccccccccccccccceehhhh----hcCCCCCCEEEc
Confidence 456666666543322 2456789999999975433221 222 467777877765
No 169
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=32.20 E-value=25 Score=19.81 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=11.8
Q ss_pred CcCCCCChHHHHHHHhc
Q 023267 3 DRISKLPDDILICILSR 19 (285)
Q Consensus 3 D~is~LPd~iL~~Ils~ 19 (285)
+-++.||.||-..|++-
T Consensus 19 eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGTTTSCHHHHHHHTTC
T ss_pred HHHHHCcHHHHHHHHhc
Confidence 44677777777777764
No 170
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=21.85 E-value=42 Score=20.90 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCC-cCCCCChHHHHHHHh
Q 023267 1 MDD-RISKLPDDILICILS 18 (285)
Q Consensus 1 ~~D-~is~LPd~iL~~Ils 18 (285)
|.| .++.||.++-..|..
T Consensus 4 M~~~wL~~LP~~Lq~kV~a 22 (70)
T 2lh0_A 4 MSKLFLDELPESLSRKIGT 22 (70)
T ss_dssp SSCCGGGGSCHHHHHHHHH
T ss_pred chHHHHHhCCHHHHHHHHH
Confidence 677 689999998777654
Done!