BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023268
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CA86|PEX2_ARATH Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2
PE=1 SV=1
Length = 333
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 254/282 (90%), Gaps = 2/282 (0%)
Query: 1 MSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 60
MSAMLKEQLVKVF+LMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE
Sbjct: 52 MSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 111
Query: 61 RAVETR--AKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLA 118
R V + KVRTGLEGPGLT+ QKIWYC+A+VGGQYL++RLQSFSAFRRWGDSEQRPLA
Sbjct: 112 RGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQSFSAFRRWGDSEQRPLA 171
Query: 119 RRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMN 178
RR W L+QRIE +YKAASF NLL FLYTGRYRNLIE+AL+ARLVY +P+MNR+VSFEYMN
Sbjct: 172 RRLWTLVQRIEGIYKAASFLNLLSFLYTGRYRNLIEKALKARLVYRSPHMNRSVSFEYMN 231
Query: 179 RQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVTTCPICQASPTTPFLAL 238
RQLVWNEFSEMLLLLLPLLNSS VK + PF+KDKSSS++ED TCPICQ P PF+AL
Sbjct: 232 RQLVWNEFSEMLLLLLPLLNSSAVKNILSPFAKDKSSSTKEDTVTCPICQVDPAIPFIAL 291
Query: 239 PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGVINPK 280
PCQHRYCYYC+RTRCA++ SFRC RCNEPV+A+QR GV + K
Sbjct: 292 PCQHRYCYYCIRTRCASAASFRCLRCNEPVVAIQREGVSSGK 333
>sp|Q75JQ3|PEX2_DICDI Peroxisome biogenesis factor 2 OS=Dictyostelium discoideum GN=pex2
PE=3 SV=1
Length = 423
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 29/299 (9%)
Query: 4 MLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAV 63
+L+ Q +K+F+ KP + ++PE++ L+ +I++ SI+ T GN L NL YR+E+A
Sbjct: 126 LLRSQFMKIFTFFKPNFIHNFQPEINLVLKSVIYKLSIFNLGTTYGNQLQNLTYRNEKAF 185
Query: 64 ETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARRAWI 123
+ +R + LT QK + +GG++LW R+ + W + + ++ W
Sbjct: 186 DP---IRGSDQLNKLTMRQKWLSGLINIGGEWLWTRINRYLINNNWSEHPPNDIRKKFWN 242
Query: 124 LIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVW 183
+ E+ YKA + N L FL+ G+Y L+ R L RLVY P ++R +SFEYMNR LVW
Sbjct: 243 FLNFAESAYKALALLNFLTFLFNGKYVTLVNRILHMRLVYAHPTLSRNISFEYMNRLLVW 302
Query: 184 NEFSEMLLLLLPLLNSSTVKGL---------FGPFSKDKSSSSEE--------------- 219
+ F+E +L ++PL+N +K FG S + ++++
Sbjct: 303 HGFTEFILFIMPLINIDRIKSFLYRLLVKTSFGNSSGNNNNTASNPLQQLQKQQLLIQQQ 362
Query: 220 --DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276
+ CPIC P + + C H +CYYC++T C SF C RCN + ++R +
Sbjct: 363 QMALAKCPICMNDPISMPYSADCGHLFCYYCIKTSCMIDSSFTCPRCNSLISNIKRFSI 421
>sp|P24392|PEX2_RAT Peroxisome biogenesis factor 2 OS=Rattus norvegicus GN=Pex2 PE=2
SV=1
Length = 305
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 25/273 (9%)
Query: 8 QLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVETRA 67
Q + F KPG+L ++EPE+ AFL +WRF+I+ T G +++N++Y+++ +
Sbjct: 36 QFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTIYSKNATVGQSVLNIQYKNDSSPNPVY 95
Query: 68 KVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLAR--RAWILI 125
+ P N QK+ Y + T+GG++L R + FR R LA +A +
Sbjct: 96 Q-------PPSKN-QKLLYAVCTIGGRWLEER--CYDLFR------NRHLASFGKAKQCM 139
Query: 126 QRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNE 185
+ L K N LIFL G++ L ER L V+ P R V FEYMNR+L+W+
Sbjct: 140 NFVVGLLKLGELMNFLIFLQKGKFATLTERLLGIHSVFCKPQSMREVGFEYMNRELLWHG 199
Query: 186 FSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVT------TCPICQASPTTPFLALP 239
F+E L+ LLPL+N +K + +S++ D T C +C PT P +
Sbjct: 200 FAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGSSGKECALCGEWPTMPH-TIG 258
Query: 240 CQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272
C+H +CYYC+++ F C +C V ++Q
Sbjct: 259 CEHVFCYYCVKSSFLFDMYFTCPKCGTEVHSVQ 291
>sp|P55098|PEX2_MOUSE Peroxisome biogenesis factor 2 OS=Mus musculus GN=Pex2 PE=2 SV=1
Length = 305
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 25/280 (8%)
Query: 1 MSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 60
+ ++ Q + F KPG+L ++EPE+ AFL +WRF+I+ T G +++N++++++
Sbjct: 29 LEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTIYSKNATVGQSVLNIQHKND 88
Query: 61 RAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLAR- 119
+ + P N QK+ Y + T+GG++L R + FR R LA
Sbjct: 89 SSPNPVYQ-------PPSKN-QKLLYAVCTIGGRWLEER--CYDLFRN------RHLASF 132
Query: 120 -RAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMN 178
+A + + L K N LIFL G++ L ER L V+ P R V FEYMN
Sbjct: 133 GKAKQCMNFVVGLLKLGELMNFLIFLQKGKFATLTERLLGIHSVFCKPQNMREVGFEYMN 192
Query: 179 RQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVT------TCPICQASPT 232
R+L+W+ F+E L+ LLPL+N +K + + ++ D T C +C PT
Sbjct: 193 RELLWHGFAEFLIFLLPLINIQKLKAKLSSWCTLCTGAAGHDSTLGSSGKECALCGEWPT 252
Query: 233 TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272
P + C+H +CYYC+++ F C +C V ++Q
Sbjct: 253 MPH-TIGCEHVFCYYCVKSSFLFDIYFTCPKCGTEVHSVQ 291
>sp|P28328|PEX2_HUMAN Peroxisome biogenesis factor 2 OS=Homo sapiens GN=PEX2 PE=1 SV=2
Length = 305
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 31/283 (10%)
Query: 1 MSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 60
+ ++ Q + F KPG+L ++EPE+ A L +WRF+I+ T G +++N++Y+++
Sbjct: 29 LEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIYSKNATVGQSVLNIKYKND 88
Query: 61 RAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRR-----WGDSEQR 115
+ R + P N QKIWY + T+GG++L R + FR +G +Q
Sbjct: 89 FSPNLRYQ-------PPSKN-QKIWYAVCTIGGRWLEER--CYDLFRNHHLASFGKVKQ- 137
Query: 116 PLARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFE 175
+ + L K N LIFL G++ L ER L V+ P V FE
Sbjct: 138 --------CVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFE 189
Query: 176 YMNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVT------TCPICQA 229
YMNR+L+W+ F+E L+ LLPL+N +K + + + D T C +C
Sbjct: 190 YMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECALCGE 249
Query: 230 SPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272
PT P + C+H +CY+C ++ F C +C V ++Q
Sbjct: 250 WPTMPH-TIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQ 291
>sp|Q06438|PEX2_CRIGR Peroxisome biogenesis factor 2 OS=Cricetulus griseus GN=PEX2 PE=1
SV=1
Length = 304
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 140/280 (50%), Gaps = 25/280 (8%)
Query: 1 MSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDE 60
+ ++ Q + F KPG+L ++EPE+ A L +WRF+I+ T G +++N++Y+++
Sbjct: 28 LEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTIYSKNATVGQSVLNIQYKND 87
Query: 61 RAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARR 120
+ +R + P N QK+WY + T+GG++L R + FR R LA
Sbjct: 88 FSSNSRYQ-------PPSKN-QKLWYAVCTIGGRWLEER--CYDLFR------NRHLASF 131
Query: 121 AWI--LIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMN 178
+ + + L K N LIFL G++ L ER L V+ P R V F+YMN
Sbjct: 132 GKVKQCMNVMVGLLKLGELINFLIFLQKGKFATLTERLLGIHSVFCKPQNIREVGFDYMN 191
Query: 179 RQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKDKSSSSEEDVTT------CPICQASPT 232
R+L+W+ F+E L+ LLPL+N K + + ++ D C +C PT
Sbjct: 192 RELLWHGFAEFLIFLLPLINIQKFKAKLSSWCIPLTGAASSDSALASSGKECALCGEWPT 251
Query: 233 TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272
P + C+H +CYYC+++ F C +C V ++Q
Sbjct: 252 MPH-TIGCEHVFCYYCVKSSFLFDMYFTCPKCGIEVHSVQ 290
>sp|P51021|PEX2_PODAS Peroxisomal biogenesis factor 2 OS=Podospora anserina GN=PEX2 PE=3
SV=1
Length = 554
Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 133/292 (45%), Gaps = 53/292 (18%)
Query: 22 FQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAVETRAKVRTGLEGPGLTNA 81
+++ E+ L +I++ +IW T G AL NL+Y D R TG +
Sbjct: 156 HEWDAEISLALRAVIFKLTIWDHDATYGAALQNLKYTDAR--------HTGSVLVPPSKW 207
Query: 82 QKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQRPLARRAWILIQRIEALYKAASFGNLL 141
QK Y + TVGG+Y+W++ +++ + G E P +R + R+ L+ AASF + L
Sbjct: 208 QKGLYGLMTVGGRYMWSKWENWLREQDGGYDEPSPTVQRLSSMTDRLSTLHAAASFASFL 267
Query: 142 IFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLN--- 198
+FL GRYR L++R LR RL T ++R VSFEY+NRQLVW+ F+E LL +LPL+
Sbjct: 268 VFLLQGRYRTLLDRVLRMRLAPPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINR 327
Query: 199 -----SSTVKGLFGPFSKDKSSSSEEDVT--------TCPIC------------------ 227
+ T + S +EE TC IC
Sbjct: 328 WRRWLARTWRKTKKIMSTTGGEGAEEKKGEFAFLPERTCAICYQDQNQATNENELMAAAT 387
Query: 228 ---------QASPTTPFLALPCQHRYCYYCLRTRC--AASPSFRCSRCNEPV 268
Q T P+ +PC YC+ CL TR + C RC E V
Sbjct: 388 SKTGVVGSAQTDVTNPYETIPCGCVYCFVCLATRIEREEGEGWNCLRCGELV 439
>sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX2 PE=3 SV=2
Length = 381
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 140/315 (44%), Gaps = 63/315 (20%)
Query: 4 MLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPTPGNALMNLRYRDERAV 63
+LK QL K F+ P +YE EL L+ ++++ ++W T G L NL++ D R
Sbjct: 34 LLKNQLFKGFTNFHPEFRDKYESELVLALKLILFKLTVWDHAITYGGKLQNLKFIDSRH- 92
Query: 64 ETRAKVRTGLEGPGLTNAQKIWYCIATVGGQYLWARLQSFSAFRRWGDSEQR-------P 116
++ +++ + QK+ Y I VGG YLW++++ + R D
Sbjct: 93 SSKLQIQPSV-------IQKLGYGILVVGGGYLWSKIEGYLLARSEDDVATDGTSVRGAS 145
Query: 117 LARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRARLVYGTPNMNRAVSFEY 176
AR A + LY AA+ GN + FLYTGRY +I R LR RLV +R VS+E+
Sbjct: 146 AARGALKVANFASLLYSAATLGNFVAFLYTGRYATVIMRLLRIRLVPSQRTSSRQVSYEF 205
Query: 177 MNRQLVWNEFSEMLLLL----------------LPLLNSSTVKGLFGPFSKDKSSSSEED 220
NRQLVWN F+E L+ + L LN + V + +SE +
Sbjct: 206 QNRQLVWNAFTEFLIFILPLLQLPKLKRRIERKLQSLNVTRVGNV--------EEASEGE 257
Query: 221 VT-----TCPIC----------------QASPTTPFLALPCQHRYCYYCLRTRCAA--SP 257
+ TC IC T P+ A C H YCY CL T+ A
Sbjct: 258 LAHLPQKTCAICFRDEEEQEGGGGASHYSTDVTNPYQA-DCGHVYCYVCLVTKLAQGDGD 316
Query: 258 SFRCSRCNEPVIAMQ 272
+ C RC + V M+
Sbjct: 317 GWNCYRCAKQVQKMK 331
>sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 OS=Komagataella pastoris GN=PEX2
PE=3 SV=1
Length = 461
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 115/294 (39%), Gaps = 68/294 (23%)
Query: 36 IWRFSIWVDKPTPGNALMNLRYRDERAVETRAKVRTGLEGPGLTNAQKIWYCIATVGGQY 95
I++ ++W + G L NL D + + + E L +KI + + G Y
Sbjct: 67 IFKVTVWNKHSSYGLTLQNLVMYDGGVHNKKFRSKQQSE---LRVTKKILLLSSVLLG-Y 122
Query: 96 LWARLQS----FSAFRRWGDSE-----QRPLARRAWILIQRIEALYKAAS---FGNLLIF 143
++QS F + D E +R + +L +I L KA S N + F
Sbjct: 123 FVKKIQSYVYSFEDYDLETDGEDLSTLERIRLKTIKLLKSQISTLEKAHSVLSLVNFVTF 182
Query: 144 LYTGRYRNLIERALRARLV------YGTPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLL 197
L +G + +L R L R + +S+E+ NRQLVWN +E ++ +LP L
Sbjct: 183 LVSGSFPDLTTRILNIRFKPLVTTQVAFASNPETISYEFQNRQLVWNTLTEFIVFILPAL 242
Query: 198 N-----SSTVKGLFGPFSKDKSSSSEEDVT--------TCPIC----QASP--------- 231
+ S V + G K S ++ED+ C IC Q S
Sbjct: 243 SVPKFTKSLVSSITGTSPK-SSQVTDEDLKVFSSLPERVCAICFQNSQNSDSGAQNDISL 301
Query: 232 -----TTPFLALPCQHRYCYYCLRTRC-----------AASPS--FRCSRCNEP 267
T P+ C H YCY C+ ++ + P+ + C RCNEP
Sbjct: 302 NDTLVTNPY-ETTCGHIYCYVCILSKLQIFKEEGKNLPKSDPNKYWHCLRCNEP 354
>sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX2 PE=1 SV=1
Length = 271
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 173 SFEYMNRQLVWNEFSEMLLLLLPLLNSSTVKGLFGPFSKD-KSSSSEEDVTTCPICQASP 231
EY NRQL+WN E+ L T +GL K +S S+ T CP C P
Sbjct: 175 GLEYQNRQLLWNALLELFSNTLL-----TKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
Query: 232 TTPFLALPCQHRYCYYCL 249
T P+ C+ YCY C+
Sbjct: 230 TNPYQIACCRANYCYVCV 247
>sp|Q5PQN5|TRI55_RAT Tripartite motif-containing protein 55 OS=Rattus norvegicus
GN=Trim55 PE=2 SV=1
Length = 545
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
+ FSK++ + E CPIC T P + LPCQH C C
Sbjct: 7 YKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T A+ FRC C V+ + RHGV
Sbjct: 67 GTTVASGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q9BYV6|TRI55_HUMAN Tripartite motif-containing protein 55 OS=Homo sapiens GN=TRIM55
PE=1 SV=2
Length = 548
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
+ FSK++ + E CPIC T P + LPCQH C C
Sbjct: 7 YKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T A+ FRC C V+ + RHGV
Sbjct: 67 GTTMASGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q969Q1|TRI63_HUMAN E3 ubiquitin-protein ligase TRIM63 OS=Homo sapiens GN=TRIM63 PE=1
SV=1
Length = 353
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTR-CAASP--------------SFRCSRCNEPV 268
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGRFRCPTCRHEV 82
Query: 269 IAMQRHGV 276
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q38HM4|TRI63_MOUSE E3 ubiquitin-protein ligase TRIM63 OS=Mus musculus GN=Trim63 PE=1
SV=1
Length = 350
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTR-CAASP--------------SFRCSRCNEPV 268
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEV 82
Query: 269 IAMQRHGV 276
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q91Z63|TRI63_RAT E3 ubiquitin-protein ligase TRIM63 OS=Rattus norvegicus GN=Trim63
PE=2 SV=1
Length = 351
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTR-CAASP--------------SFRCSRCNEPV 268
CPIC T P + LPCQH C C AA+P FRC C V
Sbjct: 23 CPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEV 82
Query: 269 IAMQRHGV 276
I M RHGV
Sbjct: 83 I-MDRHGV 89
>sp|Q58D15|TRI54_BOVIN Tripartite motif-containing protein 54 OS=Bos taurus GN=TRIM54 PE=2
SV=1
Length = 366
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRS 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q9BYV2|TRI54_HUMAN Tripartite motif-containing protein 54 OS=Homo sapiens GN=TRIM54
PE=1 SV=3
Length = 358
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q5REJ9|TRI54_PONAB Tripartite motif-containing protein 54 OS=Pongo abelii GN=TRIM54
PE=2 SV=1
Length = 358
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
F P D S E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 211 KDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
+D SS D+ C +C T LPCQH +C CL + + RC C
Sbjct: 44 EDMDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPEC 97
>sp|Q9ERP3|TRI54_MOUSE Tripartite motif-containing protein 54 OS=Mus musculus GN=Trim54
PE=1 SV=1
Length = 366
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
F P D + E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|Q5XIH6|TRI54_RAT Tripartite motif-containing protein 54 OS=Rattus norvegicus
GN=Trim54 PE=2 SV=1
Length = 364
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 206 FGPFSKDKSSSSE-EDVTTCPICQASPTTPFLALPCQHRYCYYCLR-------------- 250
F P D + E CPIC + P + LPCQH C C
Sbjct: 7 FKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRG 66
Query: 251 -TRCAASPSFRCSRCNEPVIAMQRHGV 276
T ++ FRC C V+ + RHGV
Sbjct: 67 STTVSSGGRFRCPSCRHEVV-LDRHGV 92
>sp|A7ESB8|KYNU_SCLS1 Kynureninase OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980
/ Ss-1) GN=bna5 PE=3 SV=1
Length = 475
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 12/80 (15%)
Query: 56 RYRDERAVETRAKVR-TGLEGPGLTNAQKIWYCIATVGGQ------YLWARLQSFSAFRR 108
R+RD+ + ++A ++ T LE PGL++ I++C ++G Q YL A L ++S+
Sbjct: 39 RFRDQFIIPSKANIKATKLEKPGLSDESSIYFCGNSLGLQPKCVKEYLQAHLDTWSSIGV 98
Query: 109 WG---DSEQRPLARRAWILI 125
G D E PL + W L+
Sbjct: 99 HGHFRDLEDSPLTQ--WQLL 116
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270
CP+C LPCQH +C CL+ A RC C PV +
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRVFKAHKELRCPECRTPVFS 58
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS--PSFRCSRC 264
E + TCPIC P L LPCQH +CY CL + CA + + +C C
Sbjct: 38 EQLLTCPICLDRYKQPKL-LPCQHTFCYPCLES-CADTLHRNLKCPEC 83
>sp|Q86T96|RN180_HUMAN E3 ubiquitin-protein ligase RNF180 OS=Homo sapiens GN=RNF180 PE=2
SV=2
Length = 592
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 210 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPS 258
+D + E+D C +C P++ PC H +C CLRT +PS
Sbjct: 418 DEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPS 466
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 210 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPS 258
+D + E+D C +C P++ PC+H +C CLRT +PS
Sbjct: 418 DEDNEYAEEKDSYICAVCLDVYFNPYMCYPCRHIFCEPCLRTLAKDNPS 466
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.050, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 38.5 bits (88), Expect = 0.051, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 38.5 bits (88), Expect = 0.052, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 38.5 bits (88), Expect = 0.054, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPEC 52
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 268
CPIC P+ +ALPC H +CY C+ +P+ C C PV
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPV 50
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 268
CPIC P+ +ALPC H +CY C+ +P+ C C PV
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT--CPLCKVPV 50
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 38.5 bits (88), Expect = 0.059, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL + RC C
Sbjct: 8 DLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGELRCPEC 52
>sp|P36113|YKZ7_YEAST RING finger protein YKR017C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR017C PE=1 SV=1
Length = 551
Score = 37.7 bits (86), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 147 GRYRNLIERALRARLVYGTPNMNRAVSFEYMN----RQL-VWNEFSEMLLLLLPLLNSST 201
G + +++R + ++ P+ + + ++ + R L VW E + LL+ L L ++
Sbjct: 98 GIFERMLQRVDHLQPIFAIPSADILILLQHYDWNEERLLEVWTEKMDELLVELGLSTTAN 157
Query: 202 VKGLFGPFSKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLR 250
+K S + + D T C IC T AL C H YC C R
Sbjct: 158 IKKDNDYNSHFREVEFKNDFT-CIICCDKKDTETFALECGHEYCINCYR 205
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 37.7 bits (86), Expect = 0.100, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCN 265
++ TCP C+ L+ C H +CY CLRTR +C +CN
Sbjct: 986 KETLTCPSCKVKRKDAVLS-KCFHVFCYDCLRTRYETRQR-KCPKCN 1030
>sp|Q9SIZ8|RKP_ARATH E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2
SV=2
Length = 1280
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 210 SKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269
S +K ++ ED TC IC A +A PC HR CY C+ RC CN VI
Sbjct: 1204 SFNKDTTDIED-NTCCICYAGEANAMIA-PCSHRSCYGCITRHLLNCQ--RCFFCNATVI 1259
Query: 270 AMQR 273
+ R
Sbjct: 1260 DVIR 1263
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 223 TCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNE 266
TCP+C++ P + L C H +C +C+ ++ +F C C E
Sbjct: 162 TCPLCRSLFKEPVI-LECGHNFCKHCIDKSWESASAFSCPECKE 204
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 211 KDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
+D SS D+ C +C T LPCQH +C CL + + RC C
Sbjct: 39 EDMDESSLLDLLECSVCLERLDTTAKVLPCQHTFCRRCLESIVCSRHELRCPEC 92
>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus musculus GN=Trim10
PE=2 SV=2
Length = 489
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 214 SSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC-----AASPSFRCSRCNEP 267
S +S D CPICQ + P + + C H +C CL C + S C C EP
Sbjct: 6 SVTSLADEVNCPICQGTLREP-VTIDCGHNFCRGCLTRYCEIPGPESEESLSCPLCKEP 63
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 221 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 274
V CPIC T LPC H++C C++ S + C CN V ++ H
Sbjct: 43 VMDCPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTA--CPLCNARVTSILHH 94
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 50/198 (25%)
Query: 106 FRRWGDSEQR-----PLARRAWILIQRIEALYKAASFGNLLIFLYTGRYRNLIERALRAR 160
R W + QR P+AR L+ R NL++F + G Y ++ +RA R
Sbjct: 184 MRSWHRAIQRWPVVLPVAREVLQLVLR----------ANLMLFYFEGFYYHISKRASGVR 233
Query: 161 LVYGTPNMNRAVSFEYMN---------------------------RQLVWNEFSEMLLLL 193
V+ +N+ ++ + +Q +
Sbjct: 234 YVFIGKQLNQRPRYQILGVFLLIQLCILAAEGLRRSNLSSITSSIQQASIGSYQTSGGRG 293
Query: 194 LPLLNSS----TVKGLFGPFSKDKSSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCL 249
LP+LN T + G +S S+S+E V C +C ++ P A PC H +C+ C+
Sbjct: 294 LPVLNEEGNLITSEAEKGNWSTSDSTSTEA-VGKCTLCLSTRQHP-TATPCGHVFCWSCI 351
Query: 250 RTRCAASPSFRCSRCNEP 267
C + C C P
Sbjct: 352 MEWC--NEKQECPLCRTP 367
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL ++ RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRKELRCPEC 52
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCL--------RTRCAASPSFRCSRCNEPVI 269
EED+T CPIC + P + LPC H +C CL RT SF+C C +
Sbjct: 5 EEDLT-CPICCSLFDDPRV-LPCSHNFCKKCLDGVLEENSRTMQWRPSSFKCPTCRKETP 62
Query: 270 AMQRHGV 276
M +G+
Sbjct: 63 TMGVNGL 69
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis GN=sh3rf1
PE=2 SV=1
Length = 861
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
D+ CP+C LPCQH +C CL ++ RC C
Sbjct: 8 DLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPEC 52
>sp|Q8BZT2|SH3R2_MOUSE Putative E3 ubiquitin-protein ligase SH3RF2 OS=Mus musculus
GN=Sh3rf2 PE=1 SV=2
Length = 735
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
CP+C LPCQH +C CL+ A RC C
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|O15344|TRI18_HUMAN Midline-1 OS=Homo sapiens GN=MID1 PE=1 SV=1
Length = 667
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 219 EDVTTCPICQASPTTPFLALPCQHRYCYYC----LRTRCAASPS------FRCSRCNEPV 268
E TCPIC P L LPC H C+ C L + CA + S F+C C +
Sbjct: 5 ESELTCPICLELFEDPLL-LPCAHSLCFNCAHRILVSHCATNESVESITAFQCPTCRHVI 63
Query: 269 IAMQR 273
QR
Sbjct: 64 TLSQR 68
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRT 251
CPIC S P L PC HR C CL T
Sbjct: 1040 CPICLESADDPVLT-PCAHRMCRECLLT 1066
>sp|Q498M5|SH3R2_RAT Putative E3 ubiquitin-protein ligase SH3RF2 OS=Rattus norvegicus
GN=Sh3rf2 PE=2 SV=1
Length = 735
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 224 CPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264
CP+C LPCQH +C CL+ A RC C
Sbjct: 12 CPVCFEKLDVTAKVLPCQHTFCKPCLQRIFKAHKELRCPEC 52
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain
Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 214 SSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271
S +S+ TC IC ++ + +PC H +C+ C+ R S S +C C PV ++
Sbjct: 9 SGTSDASDNTCTICMSTVSDLGKTMPCLHDFCFVCI--RAWTSTSVQCPLCRCPVQSI 64
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes GN=TRIM10
PE=3 SV=1
Length = 481
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 214 SSSSEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC-------AASPSFRCSRCNE 266
S +S D CPICQ + P + + C H +C CL C SP+ C C E
Sbjct: 6 SVTSLADEVNCPICQGTLREP-VTIDCGHNFCRACLTRYCEIPGPDLEESPT--CPLCKE 62
Query: 267 P 267
P
Sbjct: 63 P 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,603,062
Number of Sequences: 539616
Number of extensions: 3922826
Number of successful extensions: 10724
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 10593
Number of HSP's gapped (non-prelim): 248
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)