Query 023268
Match_columns 284
No_of_seqs 216 out of 1321
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yur_A Retinoblastoma-binding 99.3 3.4E-12 1.2E-16 90.5 6.2 55 217-272 11-66 (74)
2 3ztg_A E3 ubiquitin-protein li 99.3 5.5E-12 1.9E-16 93.1 5.9 54 217-271 9-63 (92)
3 2djb_A Polycomb group ring fin 99.2 1.3E-11 4.4E-16 86.9 6.9 57 217-275 11-67 (72)
4 2ecy_A TNF receptor-associated 99.2 1.6E-11 5.6E-16 84.8 5.9 52 217-270 11-62 (66)
5 2ysl_A Tripartite motif-contai 99.2 2.5E-11 8.5E-16 85.5 6.0 52 217-269 16-68 (73)
6 1t1h_A Gspef-atpub14, armadill 99.2 1.4E-11 4.9E-16 88.0 4.6 51 218-270 5-55 (78)
7 2csy_A Zinc finger protein 183 99.2 3E-11 1E-15 87.0 5.5 50 217-269 11-60 (81)
8 2d8t_A Dactylidin, ring finger 99.2 2.8E-11 9.4E-16 85.0 4.6 50 218-270 12-61 (71)
9 1chc_A Equine herpes virus-1 r 99.1 3.5E-11 1.2E-15 83.5 5.0 51 219-271 3-53 (68)
10 2ysj_A Tripartite motif-contai 99.1 6.5E-11 2.2E-15 81.0 6.3 47 217-264 16-63 (63)
11 2egp_A Tripartite motif-contai 99.1 2.3E-11 8E-16 86.9 3.3 53 217-270 8-65 (79)
12 4ayc_A E3 ubiquitin-protein li 99.1 1.8E-11 6E-16 97.4 2.9 49 220-271 52-100 (138)
13 3lrq_A E3 ubiquitin-protein li 99.1 2.7E-11 9.1E-16 91.0 3.4 50 219-270 20-70 (100)
14 2ecw_A Tripartite motif-contai 99.1 7.1E-11 2.4E-15 85.3 5.4 53 217-270 15-71 (85)
15 3fl2_A E3 ubiquitin-protein li 99.1 4.8E-11 1.6E-15 93.0 4.3 50 219-270 50-99 (124)
16 2ct2_A Tripartite motif protei 99.1 1.7E-10 5.8E-15 84.0 6.6 54 216-270 10-68 (88)
17 2kr4_A Ubiquitin conjugation f 99.1 8.4E-11 2.9E-15 85.6 4.8 50 218-270 11-60 (85)
18 2ecv_A Tripartite motif-contai 99.1 9.7E-11 3.3E-15 84.6 5.0 53 217-270 15-71 (85)
19 2ecj_A Tripartite motif-contai 99.1 1.9E-10 6.4E-15 77.1 5.8 47 217-264 11-58 (58)
20 2ckl_A Polycomb group ring fin 99.1 7.9E-11 2.7E-15 89.5 4.2 52 219-272 13-64 (108)
21 3ng2_A RNF4, snurf, ring finge 99.1 4.9E-11 1.7E-15 83.4 2.7 52 218-271 7-64 (71)
22 2ea6_A Ring finger protein 4; 99.1 8.9E-11 3E-15 81.5 4.1 52 216-269 10-67 (69)
23 2ep4_A Ring finger protein 24; 99.1 2.5E-10 8.7E-15 80.5 6.4 57 218-276 12-70 (74)
24 3l11_A E3 ubiquitin-protein li 99.1 3.8E-11 1.3E-15 92.3 2.1 52 217-270 11-62 (115)
25 2kre_A Ubiquitin conjugation f 99.0 1.1E-10 3.6E-15 87.7 4.0 50 218-270 26-75 (100)
26 1g25_A CDK-activating kinase a 99.0 1.2E-10 4.2E-15 80.1 3.7 50 220-270 2-55 (65)
27 1bor_A Transcription factor PM 99.0 8.7E-11 3E-15 78.6 2.9 46 218-269 3-48 (56)
28 2ecm_A Ring finger and CHY zin 99.0 2E-10 6.8E-15 76.2 4.2 49 219-269 3-54 (55)
29 2y43_A E3 ubiquitin-protein li 99.0 1E-10 3.6E-15 87.4 3.1 50 219-270 20-69 (99)
30 1iym_A EL5; ring-H2 finger, ub 99.0 2.7E-10 9.4E-15 75.5 4.3 49 218-269 2-54 (55)
31 1z6u_A NP95-like ring finger p 99.0 1.5E-10 5.3E-15 93.2 3.6 50 220-271 77-126 (150)
32 2ckl_B Ubiquitin ligase protei 99.0 1.3E-10 4.3E-15 95.1 3.1 54 218-272 51-104 (165)
33 2kiz_A E3 ubiquitin-protein li 99.0 5.6E-10 1.9E-14 77.6 6.0 52 217-270 10-63 (69)
34 2ect_A Ring finger protein 126 99.0 6.2E-10 2.1E-14 79.3 6.2 54 217-272 11-66 (78)
35 1wgm_A Ubiquitin conjugation f 99.0 2.8E-10 9.5E-15 85.1 4.5 50 218-270 19-69 (98)
36 2xeu_A Ring finger protein 4; 99.0 9.2E-11 3.1E-15 80.2 1.7 51 220-272 2-58 (64)
37 1jm7_A BRCA1, breast cancer ty 99.0 2.3E-10 8E-15 87.2 3.6 49 221-270 21-70 (112)
38 2ecn_A Ring finger protein 141 99.0 1.8E-10 6E-15 80.4 2.7 54 218-275 12-65 (70)
39 3hct_A TNF receptor-associated 99.0 3.3E-10 1.1E-14 87.5 4.2 52 217-270 14-65 (118)
40 1e4u_A Transcriptional repress 98.9 9E-10 3.1E-14 78.7 5.1 52 217-270 7-62 (78)
41 2l0b_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 82.6 3.6 49 218-269 37-88 (91)
42 2c2l_A CHIP, carboxy terminus 98.9 5.7E-10 1.9E-14 98.2 4.8 52 217-270 204-255 (281)
43 1x4j_A Ring finger protein 38; 98.9 4.2E-10 1.4E-14 79.7 3.1 51 218-270 20-72 (75)
44 1rmd_A RAG1; V(D)J recombinati 98.9 5.9E-10 2E-14 85.7 3.6 50 219-270 21-70 (116)
45 2yu4_A E3 SUMO-protein ligase 98.9 9.2E-10 3.2E-14 81.6 4.5 49 218-267 4-59 (94)
46 2f42_A STIP1 homology and U-bo 98.9 9.4E-10 3.2E-14 90.8 4.7 52 217-270 102-153 (179)
47 3knv_A TNF receptor-associated 98.9 3.5E-10 1.2E-14 90.2 1.7 51 217-269 27-77 (141)
48 1jm7_B BARD1, BRCA1-associated 98.9 4.2E-10 1.5E-14 86.7 2.0 45 220-269 21-66 (117)
49 2y1n_A E3 ubiquitin-protein li 98.9 1.5E-09 5E-14 99.6 5.2 54 221-276 332-385 (389)
50 1v87_A Deltex protein 2; ring- 98.9 1.6E-09 5.5E-14 82.9 4.5 51 221-271 25-95 (114)
51 4ic3_A E3 ubiquitin-protein li 98.8 6.8E-10 2.3E-14 78.6 1.8 46 220-272 23-69 (74)
52 3htk_C E3 SUMO-protein ligase 98.8 1.1E-09 3.8E-14 94.8 3.1 52 218-269 178-231 (267)
53 2vje_A E3 ubiquitin-protein li 98.8 1.8E-09 6.1E-14 74.2 3.1 50 219-271 6-58 (64)
54 2vje_B MDM4 protein; proto-onc 98.8 1.8E-09 6.3E-14 73.9 2.8 50 219-271 5-57 (63)
55 2ecg_A Baculoviral IAP repeat- 98.8 3.2E-09 1.1E-13 75.2 3.3 45 220-271 24-69 (75)
56 4ap4_A E3 ubiquitin ligase RNF 98.7 2.3E-09 7.9E-14 83.8 2.0 52 219-272 5-62 (133)
57 2ecl_A Ring-box protein 2; RNF 98.7 7.3E-09 2.5E-13 74.5 4.2 48 220-269 14-75 (81)
58 3hcs_A TNF receptor-associated 98.7 7.6E-09 2.6E-13 84.8 4.2 52 217-270 14-65 (170)
59 2ea5_A Cell growth regulator w 98.7 2.5E-08 8.5E-13 69.2 5.8 48 218-272 12-60 (68)
60 3dpl_R Ring-box protein 1; ubi 98.6 2.4E-08 8.3E-13 75.5 4.5 48 220-269 36-100 (106)
61 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.6E-13 73.3 2.2 49 220-275 17-66 (79)
62 2bay_A PRE-mRNA splicing facto 98.6 3E-08 1E-12 67.3 3.4 50 221-273 3-53 (61)
63 4ap4_A E3 ubiquitin ligase RNF 98.5 2.1E-08 7.3E-13 78.2 1.7 52 218-271 69-126 (133)
64 3vk6_A E3 ubiquitin-protein li 98.5 6.9E-08 2.4E-12 70.9 3.1 54 222-276 2-55 (101)
65 4a0k_B E3 ubiquitin-protein li 98.4 3.7E-08 1.3E-12 75.6 0.5 48 220-269 47-111 (117)
66 1wim_A KIAA0161 protein; ring 98.4 8.8E-08 3E-12 70.7 2.5 49 219-267 3-61 (94)
67 3t6p_A Baculoviral IAP repeat- 98.4 5.7E-08 1.9E-12 88.3 1.6 47 219-272 293-340 (345)
68 2d8s_A Cellular modulator of i 98.2 3E-06 1E-10 60.6 6.5 53 217-270 11-70 (80)
69 2ct0_A Non-SMC element 1 homol 97.8 2.4E-05 8.2E-10 54.8 5.4 51 219-269 13-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00022 7.6E-09 47.8 3.7 50 219-269 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.0001 3.5E-09 66.0 1.8 52 218-269 305-372 (381)
72 3nw0_A Non-structural maintena 96.4 0.0034 1.2E-07 53.8 5.1 49 221-269 180-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.014 4.9E-07 42.7 2.8 31 220-251 2-35 (101)
74 3i2d_A E3 SUMO-protein ligase 94.1 0.04 1.4E-06 49.9 4.2 51 219-269 247-299 (371)
75 4fo9_A E3 SUMO-protein ligase 93.7 0.049 1.7E-06 49.1 4.1 51 219-269 213-265 (360)
76 2ko5_A Ring finger protein Z; 92.4 0.18 6.3E-06 36.2 4.6 55 218-276 25-79 (99)
77 2cs3_A Protein C14ORF4, MY039 91.6 0.4 1.4E-05 33.4 5.4 37 218-255 12-52 (93)
78 3m62_A Ubiquitin conjugation f 88.2 0.44 1.5E-05 48.2 4.9 51 217-270 887-938 (968)
79 1weo_A Cellulose synthase, cat 87.9 0.8 2.7E-05 32.5 4.6 50 220-270 15-70 (93)
80 1wd2_A Ariadne-1 protein homol 82.2 0.4 1.4E-05 31.6 0.9 34 221-254 6-46 (60)
81 2lbm_A Transcriptional regulat 80.8 1.6 5.6E-05 33.9 4.1 48 218-266 60-116 (142)
82 3o36_A Transcription intermedi 77.9 1.3 4.4E-05 35.9 2.8 49 220-269 3-53 (184)
83 3ql9_A Transcriptional regulat 77.4 2 6.8E-05 32.9 3.5 48 218-266 54-110 (129)
84 1z60_A TFIIH basal transcripti 75.3 2.9 9.8E-05 27.4 3.4 41 222-264 16-58 (59)
85 1wfk_A Zinc finger, FYVE domai 73.1 1.9 6.6E-05 30.6 2.3 36 217-252 5-43 (88)
86 2lri_C Autoimmune regulator; Z 73.0 3.7 0.00013 27.4 3.6 49 218-267 9-59 (66)
87 2jne_A Hypothetical protein YF 71.5 0.29 9.9E-06 35.4 -2.3 46 222-275 33-78 (101)
88 2fiy_A Protein FDHE homolog; F 70.5 0.55 1.9E-05 41.6 -1.4 55 219-276 180-239 (309)
89 2pv0_B DNA (cytosine-5)-methyl 67.0 5.2 0.00018 36.3 4.3 49 218-267 90-148 (386)
90 1joc_A EEA1, early endosomal a 66.3 2.5 8.5E-05 32.1 1.8 33 220-252 68-103 (125)
91 1z2q_A LM5-1; membrane protein 64.6 3.6 0.00012 28.8 2.2 34 219-252 19-55 (84)
92 1mm2_A MI2-beta; PHD, zinc fin 63.0 3.5 0.00012 26.9 1.8 50 218-268 6-57 (61)
93 1vfy_A Phosphatidylinositol-3- 62.6 3.9 0.00013 27.7 2.1 30 222-251 12-44 (73)
94 2yw8_A RUN and FYVE domain-con 61.9 3.9 0.00013 28.4 2.0 34 219-252 17-53 (82)
95 1y02_A CARP2, FYVE-ring finger 61.4 3.3 0.00011 31.2 1.6 44 220-265 18-64 (120)
96 3u5n_A E3 ubiquitin-protein li 61.3 1.8 6E-05 35.8 0.1 50 218-268 4-55 (207)
97 1x4u_A Zinc finger, FYVE domai 61.3 4 0.00014 28.5 2.0 33 219-251 12-47 (84)
98 2gmg_A Hypothetical protein PF 60.8 4.5 0.00015 29.7 2.2 36 232-274 65-100 (105)
99 2d8v_A Zinc finger FYVE domain 60.3 3.8 0.00013 27.3 1.5 35 218-254 5-40 (67)
100 1dvp_A HRS, hepatocyte growth 60.1 3 0.0001 34.7 1.3 32 220-251 160-194 (220)
101 2xqn_T Testin, TESS; metal-bin 58.1 6.7 0.00023 29.1 2.9 47 220-270 29-75 (126)
102 3t7l_A Zinc finger FYVE domain 58.1 4.5 0.00015 28.7 1.8 51 220-270 19-76 (90)
103 3zyq_A Hepatocyte growth facto 57.6 3.8 0.00013 34.3 1.6 32 220-251 163-197 (226)
104 1wil_A KIAA1045 protein; ring 56.8 37 0.0013 23.7 6.2 54 217-272 11-81 (89)
105 2l5u_A Chromodomain-helicase-D 55.1 7.4 0.00025 25.3 2.3 48 218-266 8-57 (61)
106 2cup_A Skeletal muscle LIM-pro 54.6 6 0.0002 28.1 2.0 47 220-270 32-78 (101)
107 2a20_A Regulating synaptic mem 53.9 5.8 0.0002 25.8 1.6 39 218-269 6-44 (62)
108 1m3v_A FLIN4, fusion of the LI 52.0 20 0.00069 26.4 4.7 47 221-270 32-81 (122)
109 2l43_A N-teminal domain from h 51.5 6.2 0.00021 27.8 1.6 52 217-268 21-76 (88)
110 2zet_C Melanophilin; complex, 51.2 1.4 4.9E-05 34.7 -2.0 48 219-267 66-117 (153)
111 3a1b_A DNA (cytosine-5)-methyl 50.6 13 0.00043 29.4 3.4 49 218-267 76-134 (159)
112 2lcq_A Putative toxin VAPC6; P 49.4 4.3 0.00015 32.0 0.5 16 258-273 148-163 (165)
113 3mjh_B Early endosome antigen 48.8 3.1 0.00011 24.0 -0.3 14 221-234 5-18 (34)
114 3mpx_A FYVE, rhogef and PH dom 48.8 3.7 0.00013 37.5 0.0 48 220-267 374-429 (434)
115 2yql_A PHD finger protein 21A; 47.8 2.7 9.2E-05 26.9 -0.8 49 217-266 5-55 (56)
116 2ee8_A Protein ODD-skipped-rel 47.7 42 0.0015 23.0 5.8 53 218-270 14-85 (106)
117 2ro1_A Transcription intermedi 47.4 6.9 0.00023 31.8 1.5 47 221-268 2-50 (189)
118 2jrp_A Putative cytoplasmic pr 46.3 1.9 6.4E-05 30.2 -1.8 44 222-273 3-46 (81)
119 3pwf_A Rubrerythrin; non heme 46.1 9.4 0.00032 30.4 2.0 15 259-273 154-168 (170)
120 1fp0_A KAP-1 corepressor; PHD 45.9 10 0.00035 26.9 2.0 50 217-267 21-72 (88)
121 2k16_A Transcription initiatio 45.8 7.2 0.00025 26.4 1.1 53 218-270 15-71 (75)
122 2ct7_A Ring finger protein 31; 44.5 2.6 8.8E-05 29.6 -1.4 30 223-252 27-61 (86)
123 2rgt_A Fusion of LIM/homeobox 43.4 28 0.00094 27.2 4.5 46 220-270 32-77 (169)
124 2uzg_A Ubiquitin carboxyl-term 42.8 12 0.00042 26.8 2.0 27 221-247 25-53 (97)
125 2dmd_A Zinc finger protein 64, 40.7 25 0.00085 23.7 3.5 37 234-270 36-76 (96)
126 1yuz_A Nigerythrin; rubrythrin 38.7 13 0.00043 30.5 1.8 14 259-272 187-200 (202)
127 4ayb_P DNA-directed RNA polyme 38.7 11 0.00038 23.3 1.0 17 257-273 22-38 (48)
128 2jmo_A Parkin; IBR, E3 ligase, 38.5 3.2 0.00011 28.8 -1.7 15 239-253 55-69 (80)
129 2jtn_A LIM domain-binding prot 37.8 24 0.00084 27.9 3.4 46 220-270 86-131 (182)
130 3vth_A Hydrogenase maturation 37.5 12 0.0004 37.2 1.6 27 243-269 162-194 (761)
131 1x4w_A Hypothetical protein FL 37.4 16 0.00056 24.4 1.8 28 218-246 12-43 (67)
132 2xjy_A Rhombotin-2; oncoprotei 35.7 27 0.00094 25.8 3.2 48 220-270 28-78 (131)
133 4g9i_A Hydrogenase maturation 35.0 15 0.00052 36.5 1.9 28 243-270 157-190 (772)
134 2yt9_A Zinc finger-containing 34.2 36 0.0012 22.8 3.4 14 257-270 64-77 (95)
135 1l8d_A DNA double-strand break 33.3 11 0.00036 27.6 0.4 10 260-269 49-58 (112)
136 2jvx_A NF-kappa-B essential mo 32.8 10 0.00034 20.8 0.2 14 258-271 3-16 (28)
137 1x61_A Thyroid receptor intera 32.6 54 0.0018 21.2 4.0 35 220-254 32-66 (72)
138 1xwh_A Autoimmune regulator; P 31.8 7.9 0.00027 25.6 -0.5 48 219-267 6-55 (66)
139 1wff_A Riken cDNA 2810002D23 p 31.2 24 0.00083 24.7 1.9 27 219-246 23-51 (85)
140 4rxn_A Rubredoxin; electron tr 31.2 20 0.00068 22.8 1.4 16 257-272 35-50 (54)
141 2puy_A PHD finger protein 21A; 30.4 10 0.00035 24.4 -0.1 47 220-267 4-52 (60)
142 1zbd_B Rabphilin-3A; G protein 30.1 17 0.00058 27.8 1.1 49 219-267 53-107 (134)
143 3ttc_A HYPF, transcriptional r 29.2 22 0.00074 34.7 1.9 30 239-268 64-99 (657)
144 1wg2_A Zinc finger (AN1-like) 29.0 78 0.0027 20.8 4.0 27 219-246 13-40 (64)
145 2dlq_A GLI-kruppel family memb 27.9 60 0.002 22.8 3.8 13 258-270 94-106 (124)
146 1iml_A CRIP, cysteine rich int 27.6 49 0.0017 21.7 3.1 44 220-268 26-71 (76)
147 2v3b_B Rubredoxin 2, rubredoxi 27.4 24 0.00084 22.4 1.3 18 257-274 35-52 (55)
148 3c5k_A HD6, histone deacetylas 27.3 22 0.00075 26.1 1.3 25 221-246 24-48 (109)
149 1lko_A Rubrerythrin all-iron(I 26.9 23 0.0008 28.6 1.5 14 260-273 173-186 (191)
150 3uk3_C Zinc finger protein 217 26.3 28 0.00096 20.8 1.5 14 257-270 31-44 (57)
151 6rxn_A Rubredoxin; electron tr 25.6 25 0.00087 21.5 1.1 13 257-269 29-41 (46)
152 2kn9_A Rubredoxin; metalloprot 25.5 27 0.00093 24.2 1.4 20 257-276 59-78 (81)
153 1rut_X Flinc4, fusion protein 25.2 21 0.0007 28.6 0.8 48 220-270 31-81 (188)
154 1yk4_A Rubredoxin, RD; electro 25.0 26 0.00089 22.0 1.1 15 257-271 34-48 (52)
155 1b8t_A Protein (CRP1); LIM dom 24.8 63 0.0021 25.7 3.7 45 220-268 141-185 (192)
156 1we9_A PHD finger family prote 24.4 16 0.00056 23.6 0.1 50 218-267 3-58 (64)
157 1x4v_A Hypothetical protein LO 24.3 73 0.0025 20.8 3.3 40 220-264 11-52 (63)
158 2kmk_A Zinc finger protein GFI 23.7 34 0.0012 22.1 1.6 14 257-270 56-69 (82)
159 2lce_A B-cell lymphoma 6 prote 23.3 60 0.0021 20.6 2.9 41 218-270 14-57 (74)
160 2yt5_A Metal-response element- 23.0 11 0.00039 24.6 -1.0 52 218-269 3-63 (66)
161 1e8j_A Rubredoxin; iron-sulfur 23.0 37 0.0013 21.3 1.5 14 257-270 35-48 (52)
162 1x5w_A Zinc finger protein 64, 23.0 29 0.00098 22.0 1.1 40 219-270 7-49 (70)
163 2e72_A POGO transposable eleme 22.6 22 0.00074 22.1 0.4 17 257-273 11-27 (49)
164 1wfh_A Zinc finger (AN1-like) 22.5 1.2E+02 0.0042 19.8 4.1 27 219-246 13-40 (64)
165 1dx8_A Rubredoxin; electron tr 22.5 45 0.0015 22.4 2.0 19 257-275 39-57 (70)
166 1x4s_A Protein FON, zinc finge 22.3 43 0.0015 21.7 1.7 35 218-252 8-45 (59)
167 1f62_A Transcription factor WS 21.1 66 0.0022 19.5 2.5 44 223-266 2-49 (51)
168 1zfo_A LAsp-1; LIM domain, zin 21.1 58 0.002 17.7 2.0 18 259-276 4-21 (31)
169 2ysm_A Myeloid/lymphoid or mix 20.9 40 0.0014 24.4 1.6 48 218-265 4-55 (111)
170 2m0e_A Zinc finger and BTB dom 20.9 36 0.0012 16.4 1.1 12 259-270 3-14 (29)
171 2cur_A Skeletal muscle LIM-pro 20.8 1E+02 0.0036 19.5 3.6 34 220-253 30-63 (69)
172 2ku3_A Bromodomain-containing 20.8 30 0.001 23.2 0.8 49 218-266 13-65 (71)
173 2d8x_A Protein pinch; LIM doma 20.6 84 0.0029 20.1 3.1 35 220-254 30-64 (70)
174 2epq_A POZ-, at HOOK-, and zin 20.1 89 0.003 17.4 2.9 9 257-265 37-45 (45)
175 1znf_A 31ST zinc finger from X 20.0 44 0.0015 15.9 1.3 12 259-270 2-13 (27)
No 1
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=90.49 Aligned_cols=55 Identities=27% Similarity=0.631 Sum_probs=46.3
Q ss_pred CCCCcccccccCCCCCCCCeecc-CcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
...+...|+||.+.+.+| ++++ |||.||..||..|+.......||+||+++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred cCCCCCCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 456789999999999999 5678 999999999999998644579999999766444
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.26 E-value=5.5e-12 Score=93.08 Aligned_cols=54 Identities=28% Similarity=0.637 Sum_probs=46.1
Q ss_pred CCCCcccccccCCCCCCCCeecc-CcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
...+...|+||.+.+.+| ++++ |||.||..||..|+.......||.|+.++...
T Consensus 9 ~~~~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CCCTTTEETTTTEECSSC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred cCCcCCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 456789999999999999 5678 99999999999999765557999999987433
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=86.94 Aligned_cols=57 Identities=25% Similarity=0.458 Sum_probs=47.4
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccccccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHG 275 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~ 275 (284)
..++...|+||.+.+.+|+++++|||.||..||..|+.. ...||+|++++..-+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSSCSCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcccccc
Confidence 456789999999999999544599999999999999975 469999999988655443
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=84.85 Aligned_cols=52 Identities=27% Similarity=0.684 Sum_probs=44.5
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..++...|+||.+.+.+|+ .++|||+||..|+..|+.. ....||+|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPK-QTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 3467899999999999995 5899999999999999963 35689999998864
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.5e-11 Score=85.48 Aligned_cols=52 Identities=25% Similarity=0.707 Sum_probs=44.7
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc-CCCCccCCCCcCcc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA-SPSFRCSRCNEPVI 269 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~C~~~~~ 269 (284)
...+...|+||.+.+.+| +.++|||.||..|+..|+.. .....||.|+.++.
T Consensus 16 ~~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 456788999999999999 56799999999999999863 23568999999886
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.19 E-value=1.4e-11 Score=87.98 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=44.5
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...|+||.+.+.+| ++++|||+||..||..|+.. ....||.|+.++..
T Consensus 5 ~~~~~~C~IC~~~~~~P-v~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP-VIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSE-EEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCC-EEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 46789999999999999 56799999999999999974 35799999998863
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3e-11 Score=87.00 Aligned_cols=50 Identities=30% Similarity=0.642 Sum_probs=44.0
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
...+...|+||.+.+.+| ++++|||+||..|+..|+.. ...||+|+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP-VVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE-EECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe-eEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 345678999999999999 56899999999999999975 569999999985
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=84.97 Aligned_cols=50 Identities=30% Similarity=0.821 Sum_probs=43.7
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...|+||++.+.+| +.++|||.||+.|+..|+.. ...||+|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 45678999999999999 56799999999999999875 4699999998874
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=3.5e-11 Score=83.53 Aligned_cols=51 Identities=33% Similarity=0.835 Sum_probs=44.2
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
++...|+||.+.+.+|.+.++|||.||+.|+..|+.. ...||.|+.++...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHhh
Confidence 3567899999999997677899999999999999975 46999999998754
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.5e-11 Score=80.96 Aligned_cols=47 Identities=26% Similarity=0.767 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc-CCCCccCCC
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA-SPSFRCSRC 264 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~C 264 (284)
..++...|+||.+.+.+| +.++|||+||..||..|+.. +....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456788999999999999 56799999999999999974 235689998
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=86.92 Aligned_cols=53 Identities=28% Similarity=0.613 Sum_probs=45.1
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcC-----CCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS-----PSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~~~CP~C~~~~~~ 270 (284)
..++...|+||.+.+.+| +.++|||.||..|+..|+... ....||.|+.++..
T Consensus 8 ~~~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hcccCCCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456788999999999999 468999999999999988752 25789999999874
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=1.8e-11 Score=97.37 Aligned_cols=49 Identities=22% Similarity=0.664 Sum_probs=42.8
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
++..|+||.+.+.+| ++++|||.||..||..|+.. ...||.||.++...
T Consensus 52 ~~~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA-VTLNCAHSFCSYCINEWMKR--KIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE-EEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc-eECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCCC
Confidence 456899999999999 67899999999999999874 56899999998643
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=90.97 Aligned_cols=50 Identities=22% Similarity=0.583 Sum_probs=43.4
Q ss_pred CCcccccccCCCCCCCCee-ccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 219 EDVTTCPICQASPTTPFLA-LPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
.+...|+||++.+.+| +. ++|||.||+.||..|+... ...||.||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA-RLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc-cccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCH
Confidence 3567899999999999 55 8999999999999999864 2699999999863
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=7.1e-11 Score=85.32 Aligned_cols=53 Identities=25% Similarity=0.615 Sum_probs=45.5
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcC----CCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS----PSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~C~~~~~~ 270 (284)
...+...|+||.+.+.+| +.++|||.||..|+..|+... ....||.|+.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred hCccCCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 346778999999999999 568999999999999998863 26799999998863
No 15
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=4.8e-11 Score=93.03 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=43.7
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
++...|+||.+.+.+| ++++|||.||..||..|+.. ....||.||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 4567899999999999 67899999999999999974 34699999999875
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=84.03 Aligned_cols=54 Identities=35% Similarity=0.666 Sum_probs=45.5
Q ss_pred CCCCCcccccccCCCCCC----CCeeccCcCcccHHHHHHHHhcC-CCCccCCCCcCccc
Q 023268 216 SSEEDVTTCPICQASPTT----PFLALPCQHRYCYYCLRTRCAAS-PSFRCSRCNEPVIA 270 (284)
Q Consensus 216 ~~~~~~~~C~iC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~C~~~~~~ 270 (284)
+...+...|+||.+.+.+ | +.++|||.||..|+..|+... ....||.||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRP-KLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCE-EECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCe-EECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345678899999999988 8 568999999999999999863 34799999998764
No 17
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=8.4e-11 Score=85.61 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=44.5
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...||||.+.+++| ++++|||+||..||..|+.. ...||.|+.++..
T Consensus 11 ~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCC-eECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 45689999999999999 67899999999999999985 5699999998863
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.7e-11 Score=84.60 Aligned_cols=53 Identities=30% Similarity=0.667 Sum_probs=45.3
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc----CCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA----SPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~C~~~~~~ 270 (284)
...+...|+||.+.+.+| +.++|||.||..|+..|+.. +....||.|+.++..
T Consensus 15 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 346678999999999999 56799999999999999875 336799999999874
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=77.11 Aligned_cols=47 Identities=21% Similarity=0.682 Sum_probs=39.8
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc-CCCCccCCC
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA-SPSFRCSRC 264 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~C 264 (284)
...+...|+||.+.+.+| +.++|||+||..||..|+.. .....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999999999 56899999999999999764 346789998
No 20
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.07 E-value=7.9e-11 Score=89.52 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=44.2
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
.+...|+||.+.+.+|+++.+|||.||..||..|+.. ...||.|+.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTR 64 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSC
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccC
Confidence 4578999999999999543499999999999999975 479999999987543
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=4.9e-11 Score=83.43 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=43.5
Q ss_pred CCCcccccccCCCCCCCC------eeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 218 EEDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
..++..|+||.+.+.+|. +.++|||.||..|+..|+.. ...||.||.++..-
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChh
Confidence 456789999999887762 46899999999999999986 46999999988743
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.9e-11 Score=81.50 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=43.3
Q ss_pred CCCCCcccccccCCCCCCCC------eeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 216 SSEEDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 216 ~~~~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
....+...|+||++.+.+|. +.++|||.||..|+..|+.. ...||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34567889999999877662 46899999999999999986 469999999875
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=80.51 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=46.0
Q ss_pred CCCcccccccCCCCCCCCe--eccCcCcccHHHHHHHHhcCCCCccCCCCcCccccccccc
Q 023268 218 EEDVTTCPICQASPTTPFL--ALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~~ 276 (284)
..+...|+||++.+.++.. .++|||.||..||..|+.. ...||+||.++....+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSSCCSCCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccccccccCC
Confidence 4567899999998876632 2399999999999999986 3599999999987666544
No 24
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.06 E-value=3.8e-11 Score=92.33 Aligned_cols=52 Identities=27% Similarity=0.660 Sum_probs=44.7
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...++..|+||.+.+.+| ++++|||.||..||..|+.. ....||.|+.++..
T Consensus 11 ~~~~~~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP-VTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC-EECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCce-eEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 345678999999999999 56899999999999998864 35799999999864
No 25
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.04 E-value=1.1e-10 Score=87.70 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=44.5
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...||||.+.+.+| ++++|||+||..||..|+.. ...||.|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 45789999999999999 66799999999999999974 5799999998864
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1.2e-10 Score=80.14 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=41.2
Q ss_pred CcccccccCC-CCCCCC---eeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQA-SPTTPF---LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~-~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
++..|+||.+ ...+|. +.++|||+||..|+..++..+ ...||.|++++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCcccc
Confidence 4578999999 777773 357999999999999997653 5689999999864
No 27
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=8.7e-11 Score=78.57 Aligned_cols=46 Identities=35% Similarity=0.775 Sum_probs=39.8
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
..+...|+||.+.+.+| +.++|||.||..|+.. ....||+|++++.
T Consensus 3 e~~~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCe-EEcCCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence 35678999999999999 5789999999999876 2468999999887
No 28
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.02 E-value=2e-10 Score=76.17 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=41.0
Q ss_pred CCcccccccCCCCCC---CCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 219 EDVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
.+...|+||.+.+.+ +.+.++|||.||..|+..|+... ..||+|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 356789999998755 23678999999999999999864 69999999875
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=87.40 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=42.6
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
.+...|+||.+.+.+|+++++|||.||..|+..|+.. ...||.|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 3467899999999999543499999999999999974 4699999998874
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.00 E-value=2.7e-10 Score=75.52 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=40.3
Q ss_pred CCCcccccccCCCCCC---CCeecc-CcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASPTT---PFLALP-CQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
.+++..|+||.+.+.+ + +.++ |||.||..|+.+|+.. ...||.||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 3567789999998776 5 4555 9999999999999875 568999998764
No 31
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=93.24 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=43.5
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
+...|+||.+.+.+| ++++|||.||..||..|+.. ....||+|+.++..-
T Consensus 77 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP-VTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC-EEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 457899999999999 56899999999999999975 346899999998743
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.00 E-value=1.3e-10 Score=95.13 Aligned_cols=54 Identities=22% Similarity=0.592 Sum_probs=45.0
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
..+...|+||.+.+.+|+++.+|||.||..||..|+..+ ...||.|+.++...+
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLVSKR 104 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSGG
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCcc
Confidence 345789999999999995445999999999999999853 578999999986443
No 33
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=5.6e-10 Score=77.61 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=41.8
Q ss_pred CCCCcccccccCCCCC--CCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPT--TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...|+||++.+. .+.+.++|||.||..|+..|+.. ...||+||.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 3456789999988764 23366899999999999999986 4589999998874
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=6.2e-10 Score=79.33 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=43.6
Q ss_pred CCCCcccccccCCCCCCCC--eeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 217 SEEDVTTCPICQASPTTPF--LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
...+...|+||++.+.++. ..++|||.||..||..|+.. ...||+||+++..-+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQN 66 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCSC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCcc
Confidence 3456789999999887552 34699999999999999975 469999999987533
No 35
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=2.8e-10 Score=85.08 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCCcccccccCCCCCCCCeeccCc-CcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQ-HRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...||||.+.+++| ++++|| |+||..||..|+.. ...||+|+.++..
T Consensus 19 ~p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 45689999999999999 678999 99999999999975 5699999998863
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.99 E-value=9.2e-11 Score=80.17 Aligned_cols=51 Identities=24% Similarity=0.655 Sum_probs=42.3
Q ss_pred CcccccccCCCCCCCC------eeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 220 DVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
+...|+||.+.+.+|. +.++|||.||..|+.+|+.. ...||.||+++..-+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCccc
Confidence 4578999999877652 46799999999999999986 569999999987543
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.3e-10 Score=87.21 Aligned_cols=49 Identities=22% Similarity=0.697 Sum_probs=42.0
Q ss_pred cccccccCCCCCCCCeeccCcCcccHHHHHHHHhcC-CCCccCCCCcCccc
Q 023268 221 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAAS-PSFRCSRCNEPVIA 270 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~C~~~~~~ 270 (284)
...|+||.+.+.+|. .++|||.||..|+..|+... ....||.|+.++..
T Consensus 21 ~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 468999999999994 68999999999999999753 23589999998874
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=80.44 Aligned_cols=54 Identities=24% Similarity=0.594 Sum_probs=45.1
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccccccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHG 275 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~ 275 (284)
..+...|+||.+.+.+ +.++|||.||..|+..|+.. ...||.||.++...++.-
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccCCCccc
Confidence 4567899999999888 56899999999999999873 579999999988655443
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.97 E-value=3.3e-10 Score=87.51 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=44.9
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..++...|+||.+.+.+| +.++|||+||..||..|+... ...||.|+.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCH
Confidence 356778999999999999 568999999999999999753 3499999998875
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.93 E-value=9e-10 Score=78.73 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=41.3
Q ss_pred CCCCcccccccCCCCC--CCCeecc--CcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPT--TPFLALP--CQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~--~p~~~~~--CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+++..||||.+... ++ ...+ |||.||..|+...+.. ....||.||+++..
T Consensus 7 ~~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3567889999999774 33 3344 9999999999988754 46799999999874
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.93 E-value=4.7e-10 Score=82.58 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=41.2
Q ss_pred CCCcccccccCCCCCC---CCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
..++..|+||++.+.+ + +.++|||.||..||..|+.. ...||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 4567899999987765 5 56799999999999999975 469999999875
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=5.7e-10 Score=98.24 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=44.6
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...||||.+.+.+| ++++|||+||..||..|+..++ ..||+|+.+++.
T Consensus 204 ~~~~~~~c~i~~~~~~dP-v~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE-EECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhcCC-eECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCch
Confidence 345788999999999999 6789999999999999998643 359999999863
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=4.2e-10 Score=79.69 Aligned_cols=51 Identities=22% Similarity=0.522 Sum_probs=42.0
Q ss_pred CCCcccccccCCCCCCC--CeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTP--FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..+...|+||++.+.++ ++.++|||.||..|+..|+.. ...||+||+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 45678999999887665 345789999999999999986 4699999998764
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=5.9e-10 Score=85.68 Aligned_cols=50 Identities=22% Similarity=0.628 Sum_probs=43.6
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
.+...|+||.+.+.+| +.++|||+||..||..|+... ...||.|+.++..
T Consensus 21 ~~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADP-VETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 3568899999999999 568999999999999999763 4689999999874
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=9.2e-10 Score=81.56 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=40.9
Q ss_pred CCCcccccccCCCCCCCCeecc-CcCcccHHHHHHHHhcC----CCCccCC--CCcC
Q 023268 218 EEDVTTCPICQASPTTPFLALP-CQHRYCYYCLRTRCAAS----PSFRCSR--CNEP 267 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~-CgH~fC~~Ci~~~~~~~----~~~~CP~--C~~~ 267 (284)
..+...||||.+.+.+| ++++ |||+||..||..|+... ....||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~dP-V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP-VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE-EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC-EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35678999999999999 5664 99999999999999752 2468999 8755
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.90 E-value=9.4e-10 Score=90.75 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=44.8
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...||||.+.+.+| ++++|||+||..||..|+...+ ..||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DP-V~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP-CITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCC-eECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCCh
Confidence 346789999999999999 6789999999999999998643 379999998864
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.89 E-value=3.5e-10 Score=90.20 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=43.8
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
..++...|+||.+.+.+| +.++|||+||..||..|+..+ ...||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSG-PQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGS-CEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcC-CCCCCCCCCccc
Confidence 356788999999999999 568999999999999998753 468999999763
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=4.2e-10 Score=86.73 Aligned_cols=45 Identities=24% Similarity=0.685 Sum_probs=39.9
Q ss_pred CcccccccCCCCCCCCeec-cCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 220 DVTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
+...|+||.+.+.+| +++ +|||+||..||..|+. ..||.|+.++.
T Consensus 21 ~~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 467899999999999 456 9999999999999875 68999999885
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.86 E-value=1.5e-09 Score=99.59 Aligned_cols=54 Identities=22% Similarity=0.458 Sum_probs=46.5
Q ss_pred cccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccccccc
Q 023268 221 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~~ 276 (284)
...|+||.+...+| +.++|||.||..|+..|... ....||.||.++.......+
T Consensus 332 ~~~C~ICle~~~~p-v~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDV-KIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCE-EEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCe-EEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCceeEec
Confidence 47999999999999 67899999999999999874 25699999999987666655
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.86 E-value=1.6e-09 Score=82.87 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=40.6
Q ss_pred cccccccCCCCCCCC-----------------eeccCcCcccHHHHHHHHhc---CCCCccCCCCcCcccc
Q 023268 221 VTTCPICQASPTTPF-----------------LALPCQHRYCYYCLRTRCAA---SPSFRCSRCNEPVIAM 271 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~-----------------~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~C~~~~~~~ 271 (284)
+..|+||++.+..|. ..++|||.||..||..|+.. .....||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999886652 15799999999999999953 2357999999988643
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=6.8e-10 Score=78.56 Aligned_cols=46 Identities=24% Similarity=0.561 Sum_probs=40.1
Q ss_pred CcccccccCCCCCCCCeeccCcCc-ccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
+...|+||.+...+| +.++|||. ||..|+..+ ..||.||+++....
T Consensus 23 ~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC------SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC------ccCCCcCcCccCcE
Confidence 457899999999999 67899999 999999865 58999999987543
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.1e-09 Score=94.81 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=44.8
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCC--CCcCcc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSR--CNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~--C~~~~~ 269 (284)
......||||.+.+++|++...|||+||..||..++...+.+.||+ |++++.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4578999999999999954469999999999999997655678999 999775
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.8e-09 Score=74.16 Aligned_cols=50 Identities=22% Similarity=0.600 Sum_probs=42.5
Q ss_pred CCcccccccCCCCCCCCeec--cCcCc-ccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 219 EDVTTCPICQASPTTPFLAL--PCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
+++..|+||.+...++ +.+ +|||. +|+.|+..+... ...||+||+++...
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence 4567899999999999 555 99999 899999998864 46899999998754
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.80 E-value=1.8e-09 Score=73.87 Aligned_cols=50 Identities=20% Similarity=0.525 Sum_probs=42.1
Q ss_pred CCcccccccCCCCCCCCeec--cCcCc-ccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 219 EDVTTCPICQASPTTPFLAL--PCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~--~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
+....|+||.+...++ +.+ +|||. ||+.|+..+... ...||+||+++...
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence 4567899999999998 556 99998 999999988764 46999999998754
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.2e-09 Score=75.21 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCCCeeccCcCc-ccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
+...|+||.+.+.+| +.++|||. ||..|+.. ...||.||.++...
T Consensus 24 ~~~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI-VFVPCGHLVTCKQCAEA------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB-CCSSSCCCCBCHHHHHH------CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE-EEecCCCHHHHHHHhhC------CCCCccCCceecCc
Confidence 457899999999999 57899999 99999953 36899999998753
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.74 E-value=2.3e-09 Score=83.78 Aligned_cols=52 Identities=23% Similarity=0.636 Sum_probs=43.5
Q ss_pred CCcccccccCCCCCCCC------eeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 219 EDVTTCPICQASPTTPF------LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~------~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
.+...|+||++.+.+|+ +.++|||+||..||..|+.. ...||.|++++...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCcccc
Confidence 45789999999988772 46899999999999999975 459999999987543
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=7.3e-09 Score=74.48 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=38.7
Q ss_pred CcccccccCCCCCC--------------CCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 220 DVTTCPICQASPTT--------------PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 220 ~~~~C~iC~~~~~~--------------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
++..|+||++.+.+ +.+..+|||.|+..||.+|+.. ...||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 46679999887765 4333459999999999999985 459999999876
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.71 E-value=7.6e-09 Score=84.83 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=44.8
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...|+||.+.+.+| +.++|||+||..|+..|+... ...||.|+.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 356789999999999999 568999999999999998753 3499999998874
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.5e-08 Score=69.25 Aligned_cols=48 Identities=29% Similarity=0.657 Sum_probs=41.0
Q ss_pred CCCcccccccCCCCCCCCeeccCcCc-ccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
..+...|+||++...++ +.++|||. ||..|+.. ...||+||.++....
T Consensus 12 ~~~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY------FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCCSSCCSSSSSSCCCC-EETTTTBCCSCTTHHHH------CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCCcCcCCCCE-EEECCCChhhhHHHHhc------CCCCCCCCcchhceE
Confidence 45678999999999999 78999999 99999983 358999999998643
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.63 E-value=2.4e-08 Score=75.46 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=39.6
Q ss_pred CcccccccCCCCCCC-----------------CeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 220 DVTTCPICQASPTTP-----------------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
++..|+||++.+..+ .+.++|||.|+..||..|+.. ...||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 456899999887755 344799999999999999975 569999999864
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=1.1e-08 Score=73.30 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=40.9
Q ss_pred CcccccccCCCCCCCCeeccCcCc-ccHHHHHHHHhcCCCCccCCCCcCcccccccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQRHG 275 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~ 275 (284)
+...|+||.+...+| +.++|||. ||..|+..+ ..||.||.++....+.-
T Consensus 17 ~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 17 EAMLCMVCCEEEINS-TFCPCGHTVCCESCAAQL------QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHTBCTTTSSSBCCE-EEETTCBCCBCHHHHTTC------SBCTTTCCBCCEEEECB
T ss_pred CCCEeEEeCcccCcE-EEECCCCHHHHHHHHHhc------CcCCCCCchhhCeEEEE
Confidence 456899999999999 67899999 999998743 49999999998754433
No 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=3e-08 Score=67.26 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=42.0
Q ss_pred cccccccCCCCCCCCeec-cCcCcccHHHHHHHHhcCCCCccCCCCcCcccccc
Q 023268 221 VTTCPICQASPTTPFLAL-PCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQR 273 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~-~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~ 273 (284)
...||||.+...+| +.. +|||+||..||.+|+..+ ..||++++++..-+-
T Consensus 3 ~~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChhhc
Confidence 36799999999999 556 999999999999999853 469999999875443
No 63
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=2.1e-08 Score=78.20 Aligned_cols=52 Identities=23% Similarity=0.627 Sum_probs=43.1
Q ss_pred CCCcccccccCCCCCCC------CeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccc
Q 023268 218 EEDVTTCPICQASPTTP------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAM 271 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~ 271 (284)
.++...|+||++.+.+| .+.++|||+||..|+.+|+.. ...||+||.++..-
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChh
Confidence 45678899999987664 146799999999999999986 46999999998753
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.47 E-value=6.9e-08 Score=70.89 Aligned_cols=54 Identities=22% Similarity=0.533 Sum_probs=45.1
Q ss_pred ccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccccccc
Q 023268 222 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 222 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~~ 276 (284)
..|+.|.-+...-....||+|+|||+|+..+.+++ ...||.|+.++..+++...
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCSEEEEEEG
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-CCCCcCcCCeeeeeEEecc
Confidence 35899998888776789999999999999987653 5799999999998877543
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.41 E-value=3.7e-08 Score=75.64 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=1.0
Q ss_pred CcccccccCCCCCCC-----------------CeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 220 DVTTCPICQASPTTP-----------------FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p-----------------~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
++..|+||++.+..+ .+..+|+|.|+..||..|+.. ...||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 456899999887653 223589999999999999985 568999999864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=8.8e-08 Score=70.66 Aligned_cols=49 Identities=18% Similarity=0.585 Sum_probs=38.9
Q ss_pred CCcccccccCCCCCCCCee--ccCcCcccHHHHHHHHhc----C--CCCccCC--CCcC
Q 023268 219 EDVTTCPICQASPTTPFLA--LPCQHRYCYYCLRTRCAA----S--PSFRCSR--CNEP 267 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~--~~CgH~fC~~Ci~~~~~~----~--~~~~CP~--C~~~ 267 (284)
.+...|+||.+....|... .+|||.||..|+..++.. + ....||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567899999998877432 379999999999999874 1 2368999 9987
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.41 E-value=5.7e-08 Score=88.30 Aligned_cols=47 Identities=21% Similarity=0.596 Sum_probs=40.6
Q ss_pred CCcccccccCCCCCCCCeeccCcCc-ccHHHHHHHHhcCCCCccCCCCcCccccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHR-YCYYCLRTRCAASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~ 272 (284)
++...|+||.+.+.+| +.++|||. ||..|+..+ ..||.||.++....
T Consensus 293 ~~~~~C~IC~~~~~~~-v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV-VFIPCGHLVVCQECAPSL------RKCPICRGIIKGTV 340 (345)
T ss_dssp HTTCBCTTTSSSBCCE-EEETTCCEEECTTTGGGC------SBCTTTCCBCCEEE
T ss_pred cCCCCCCccCCcCCce-EEcCCCChhHhHHHHhcC------CcCCCCCCCccCeE
Confidence 3568999999999999 67899999 999999865 58999999987543
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3e-06 Score=60.56 Aligned_cols=53 Identities=26% Similarity=0.556 Sum_probs=42.7
Q ss_pred CCCCcccccccCCCC--CCCCeeccCc-----CcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASP--TTPFLALPCQ-----HRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~--~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...|+||++.. .++ ..++|+ |.|...||..|+.......||+|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 445678899998765 467 457996 99999999999986545699999998863
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=2.4e-05 Score=54.85 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=41.1
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
+....|+||.+.+..-.....|+|.|=..||..|++......||.|+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 456789999998764433457999999999999998654479999998876
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.27 E-value=0.00022 Score=47.76 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCcccccccCCCCCCCCeeccCc--C---cccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQ--H---RYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~Cg--H---~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
++...|.||++...+|. ..||. + .|=..|+..|+....+..||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46678999988777774 46765 3 788899999998655679999998875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.19 E-value=0.0001 Score=66.05 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=39.5
Q ss_pred CCCcccccccCCCCCC----C---CeeccCcCcccHHHHHHHHhcCC---------CCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASPTT----P---FLALPCQHRYCYYCLRTRCAASP---------SFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~----p---~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~C~~~~~ 269 (284)
.+....|+||.+.... | +....|||.|-..|+.+|+.+.+ ...||.|+++++
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4567899999876554 3 22347999999999999997521 257999999886
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.39 E-value=0.0034 Score=53.80 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=39.9
Q ss_pred cccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 221 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
...|.+|.+....-.....|+|.|=..|+..|++......||.|+.+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5689999998775544455999999999999987655679999998754
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.92 E-value=0.014 Score=42.68 Aligned_cols=31 Identities=23% Similarity=0.776 Sum_probs=25.5
Q ss_pred CcccccccCCC-CCCCCee--ccCcCcccHHHHHH
Q 023268 220 DVTTCPICQAS-PTTPFLA--LPCQHRYCYYCLRT 251 (284)
Q Consensus 220 ~~~~C~iC~~~-~~~p~~~--~~CgH~fC~~Ci~~ 251 (284)
++..|++|.+. ...| +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~a-v~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-VKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBC-CEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCc-eEECCcCChHHhHHHCHH
Confidence 35789999975 5566 55 89999999999997
No 74
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.04 Score=49.86 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=40.7
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHH--HHHHHhcCCCCccCCCCcCcc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYC--LRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~C--i~~~~~~~~~~~CP~C~~~~~ 269 (284)
.-.+.||+-...+..|+....|.|.-|.+- +.......+.+.||+|++.+.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 346899999999999999999999977755 333334457899999998875
No 75
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.73 E-value=0.049 Score=49.13 Aligned_cols=51 Identities=22% Similarity=0.519 Sum_probs=40.2
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHH--HHHHHhcCCCCccCCCCcCcc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYC--LRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~C--i~~~~~~~~~~~CP~C~~~~~ 269 (284)
.-.+.||+-......|+....|.|.-|.+- +.......+.+.||+|++.+.
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 346899999999999999999999977644 333333457899999999876
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.36 E-value=0.18 Score=36.21 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=41.8
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccccccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~~ 276 (284)
.-....|..|....++= ..+..|-.|..|+...+.. ...||+|++++..--+++.
T Consensus 25 ~~G~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSV--SNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CSCCCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSS--SSEETTTTEECCCCSCTTT
T ss_pred ccCcccChhhccccCCe--eeecchhhHHHHHHHHHhh--ccCCcccCCcCCcceecCc
Confidence 34568899999877754 3578999999999887764 4599999999975444433
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.58 E-value=0.4 Score=33.35 Aligned_cols=37 Identities=24% Similarity=0.726 Sum_probs=29.0
Q ss_pred CCCcccccccCCCCCCCCeeccC----cCcccHHHHHHHHhc
Q 023268 218 EEDVTTCPICQASPTTPFLALPC----QHRYCYYCLRTRCAA 255 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~C----gH~fC~~Ci~~~~~~ 255 (284)
......|.+|.+.+.+.+- ..| +|.||..|-...++.
T Consensus 12 ~~a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 3567899999998876642 344 899999999988874
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.23 E-value=0.44 Score=48.25 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=44.1
Q ss_pred CCCCcccccccCCCCCCCCeeccCc-CcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQ-HRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
...+...|||-.+...+| |+++.| +.|=..+|..|+.. +..||..|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DP-VilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDP-VILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCC-eEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCc
Confidence 345789999999999999 678997 68999999999985 4589999998874
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.86 E-value=0.8 Score=32.53 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=36.4
Q ss_pred CcccccccCCCCC-----CCC-eeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPT-----TPF-LALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~-----~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
..-.|.||.+..- ++. ....|+.-.|..|..--.+ +.+..||.|+.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 4568999987522 122 2368999999999875444 467899999998863
No 80
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.20 E-value=0.4 Score=31.61 Aligned_cols=34 Identities=21% Similarity=0.699 Sum_probs=21.8
Q ss_pred cccccccCCCCC-----CCCeecc--CcCcccHHHHHHHHh
Q 023268 221 VTTCPICQASPT-----TPFLALP--CQHRYCYYCLRTRCA 254 (284)
Q Consensus 221 ~~~C~iC~~~~~-----~p~~~~~--CgH~fC~~Ci~~~~~ 254 (284)
...||-|..... +-++... |++.|||.|..+|..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 356888876544 2222223 899999999877654
No 81
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.83 E-value=1.6 Score=33.91 Aligned_cols=48 Identities=15% Similarity=0.424 Sum_probs=35.5
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHh---------cCCCCccCCCCc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA---------ASPSFRCSRCNE 266 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---------~~~~~~CP~C~~ 266 (284)
...+..|.+|.+.-.-- -...|-.+||..|+...+. ..+.+.||.|..
T Consensus 60 Dg~~d~C~vC~~GG~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 44578899998755433 3468999999999996442 346799999974
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.94 E-value=1.3 Score=35.88 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=33.7
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcCcc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPVI 269 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~~~ 269 (284)
++..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|...-.
T Consensus 3 ~~~~C~~C~~~g~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGELL-CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSSCE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCeee-ecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 456799998654433 34678888888887654432 24689999987654
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=77.35 E-value=2 Score=32.86 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHH--------h-cCCCCccCCCCc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC--------A-ASPSFRCSRCNE 266 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~--------~-~~~~~~CP~C~~ 266 (284)
...+..|.+|.+.-.-. -...|-..||..|+...+ . ..+.+.|+.|..
T Consensus 54 Dg~~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44567799998765544 346899999999998642 1 245799999965
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=75.34 E-value=2.9 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.565 Sum_probs=29.1
Q ss_pred ccccccCCCCCCC--CeeccCcCcccHHHHHHHHhcCCCCccCCC
Q 023268 222 TTCPICQASPTTP--FLALPCQHRYCYYCLRTRCAASPSFRCSRC 264 (284)
Q Consensus 222 ~~C~iC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C 264 (284)
..|-.|+..+.+. +....|++.||.+|=. ...+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV--FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH--TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH--HHHhhccCCcCC
Confidence 4588898877543 4467899999999953 222345689988
No 85
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.11 E-value=1.9 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCCcccccccCCCCCC---CCeeccCcCcccHHHHHHH
Q 023268 217 SEEDVTTCPICQASPTT---PFLALPCQHRYCYYCLRTR 252 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~ 252 (284)
...+...|.+|...+.. -+....||.+||..|....
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34566789999886542 2345789999999997643
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.99 E-value=3.7 Score=27.42 Aligned_cols=49 Identities=14% Similarity=0.453 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcC
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 267 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~ 267 (284)
..+...|.+|.+.-.. ..-..|...|-..|+...+.. ...+.||.|...
T Consensus 9 ~~~~~~C~vC~~~~~l-l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDGTDV-LRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCCTTC-EECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCCCeE-EECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456789999875432 245778999999999766554 246899999754
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.49 E-value=0.29 Score=35.38 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=32.5
Q ss_pred ccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccccccc
Q 023268 222 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHG 275 (284)
Q Consensus 222 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~ 275 (284)
..||.|..... + .=++.+|..|-..... ...||.|++++..++-=|
T Consensus 33 ~~CP~Cq~eL~-~----~g~~~hC~~C~~~f~~---~a~CPdC~q~LevLkACG 78 (101)
T 2jne_A 33 LHCPQCQHVLD-Q----DNGHARCRSCGEFIEM---KALCPDCHQPLQVLKACG 78 (101)
T ss_dssp CBCSSSCSBEE-E----ETTEEEETTTCCEEEE---EEECTTTCSBCEEEEETT
T ss_pred ccCccCCCcce-e----cCCEEECccccchhhc---cccCcchhhHHHHHHHhc
Confidence 89999997543 1 2345569888765443 458999999998776544
No 88
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.48 E-value=0.55 Score=41.57 Aligned_cols=55 Identities=22% Similarity=0.465 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCCCeec---cCc--CcccHHHHHHHHhcCCCCccCCCCcCccccccccc
Q 023268 219 EDVTTCPICQASPTTPFLAL---PCQ--HRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~---~Cg--H~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~~~ 276 (284)
.....||+|...+...++.. .=| +.+|..|-..|-- ....||.|+.. ..++-+++
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~-~~l~y~~~ 239 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES-KHLAYLSL 239 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC-SCCEEECC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC-CCeeEEEe
Confidence 55789999999877653221 133 6889999888765 36799999987 44544444
No 89
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=66.96 E-value=5.2 Score=36.28 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=35.0
Q ss_pred CCCcccccccCCCCCCCCeec--cCcCcccHHHHHHHHh--------cCCCCccCCCCcC
Q 023268 218 EEDVTTCPICQASPTTPFLAL--PCQHRYCYYCLRTRCA--------ASPSFRCSRCNEP 267 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~--------~~~~~~CP~C~~~ 267 (284)
...+..|.+|.+.-.-= ... .|...||..||...+- ....+.|=.|.-.
T Consensus 90 DG~~~yCr~C~~Gg~l~-~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLL-ICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCSSCE-ECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCCeEE-EeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34578899998754321 233 7889999999998662 2357999999754
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.28 E-value=2.5 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.489 Sum_probs=24.2
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHHH
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTR 252 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~ 252 (284)
+...|.+|...+. -.+....||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3457999988654 23456789999999996543
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.61 E-value=3.6 Score=28.78 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCcccccccCCCCC---CCCeeccCcCcccHHHHHHH
Q 023268 219 EDVTTCPICQASPT---TPFLALPCQHRYCYYCLRTR 252 (284)
Q Consensus 219 ~~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~ 252 (284)
.+...|.+|...+. .-+....||.+||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45678999988654 23455789999999997543
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=63.02 E-value=3.5 Score=26.92 Aligned_cols=50 Identities=20% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcCc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 268 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~~ 268 (284)
..++..|.+|.+.-..- ....|...|-..|+..-+.. .+.+.||.|....
T Consensus 6 d~~~~~C~vC~~~g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 44577899998643322 34567777778888754432 2468899997643
No 93
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=62.56 E-value=3.9 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=22.6
Q ss_pred ccccccCCCCC---CCCeeccCcCcccHHHHHH
Q 023268 222 TTCPICQASPT---TPFLALPCQHRYCYYCLRT 251 (284)
Q Consensus 222 ~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 251 (284)
..|.+|...+. -.+....||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 58999988654 2344578999999999643
No 94
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.93 E-value=3.9 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.581 Sum_probs=24.8
Q ss_pred CCcccccccCCCCC---CCCeeccCcCcccHHHHHHH
Q 023268 219 EDVTTCPICQASPT---TPFLALPCQHRYCYYCLRTR 252 (284)
Q Consensus 219 ~~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~ 252 (284)
.+...|.+|...+. --+....||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34568999988654 23345789999999997643
No 95
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.42 E-value=3.3 Score=31.25 Aligned_cols=44 Identities=20% Similarity=0.457 Sum_probs=27.3
Q ss_pred CcccccccCCCCCC---CCeeccCcCcccHHHHHHHHhcCCCCccCCCC
Q 023268 220 DVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCN 265 (284)
Q Consensus 220 ~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~ 265 (284)
+...|..|...+.. -+....||.+||..|...... ....|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--CceECHHHH
Confidence 44689999886652 235578999999999654432 233566664
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.31 E-value=1.8 Score=35.81 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcCc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 268 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~~ 268 (284)
..++..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|...-
T Consensus 4 d~~~~~C~~C~~~g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGDLL-CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEEEE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCceE-EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34567799998654322 34678888888888654432 2468999998754
No 97
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.30 E-value=4 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCcccccccCCCCC---CCCeeccCcCcccHHHHHH
Q 023268 219 EDVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 251 (284)
Q Consensus 219 ~~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 251 (284)
.+...|..|...+. .-+....||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34568999988654 2344578999999999653
No 98
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.83 E-value=4.5 Score=29.67 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccccccc
Q 023268 232 TTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQRH 274 (284)
Q Consensus 232 ~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~~ 274 (284)
..|+....||+.|+ ..+ +....||.|+..-...-++
T Consensus 65 v~p~~C~~CG~~F~-----~~~--~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEI--NIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCS--SCCSSCSSSCCCCBCCCCE
T ss_pred EECcChhhCcCeec-----ccC--CCCCCCcCCCCCccCCcce
Confidence 44557788999992 111 2346899998765544333
No 99
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.32 E-value=3.8 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.577 Sum_probs=27.2
Q ss_pred CCCcccccccCCCCCCCCeeccC-cCcccHHHHHHHHh
Q 023268 218 EEDVTTCPICQASPTTPFLALPC-QHRYCYYCLRTRCA 254 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~ 254 (284)
.++..=|.||.+.-+. ....| |-+||..|..+...
T Consensus 5 ~ee~pWC~ICneDAtl--rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDATL--RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCCE--EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCeE--EecCCCCceehHHHHHHHcc
Confidence 4556779999997553 45788 99999999988653
No 100
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.13 E-value=3 Score=34.68 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=24.1
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHH
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 251 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 251 (284)
+...|..|...+. -.+....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3579999987654 3345678999999999654
No 101
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=58.14 E-value=6.7 Score=29.12 Aligned_cols=47 Identities=13% Similarity=0.329 Sum_probs=34.6
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-..|..|...+....-...=|..||..|..... ...|..|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 4578999988776421234678899999987644 4589999999874
No 102
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.09 E-value=4.5 Score=28.67 Aligned_cols=51 Identities=22% Similarity=0.525 Sum_probs=31.6
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHHHHhc----CCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAA----SPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~C~~~~~~ 270 (284)
+...|.+|...+. .-+....||++||..|....... .+...|-.|-..+..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 4567999987554 23456789999999997654321 112345555544433
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.63 E-value=3.8 Score=34.29 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=24.0
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHH
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRT 251 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~ 251 (284)
+...|..|...+. .-+....||.+||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4568999987554 2345679999999999754
No 104
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.76 E-value=37 Score=23.74 Aligned_cols=54 Identities=17% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCCCcccccccCC---CCCCCCeeccCcCcccHHHHHHHHh--------------cCCCCccCCCCcCccccc
Q 023268 217 SEEDVTTCPICQA---SPTTPFLALPCQHRYCYYCLRTRCA--------------ASPSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 217 ~~~~~~~C~iC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~--------------~~~~~~CP~C~~~~~~~~ 272 (284)
....+..|.||.. .-..|. ..|+-+|=-.|+...-. .+..+.||.|..-..-++
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pC--RvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLt 81 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPC--RVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLT 81 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSC--SSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSC
T ss_pred CCCCCcccCccccccccceecc--ccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcc
Confidence 3456789999974 334664 57999999999998511 123689999955433333
No 105
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=55.07 E-value=7.4 Score=25.33 Aligned_cols=48 Identities=21% Similarity=0.571 Sum_probs=33.0
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 266 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~ 266 (284)
..++..|.+|.+.-..- ....|...|-..|+..-+.. +..+.||.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll-~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEII-LCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEE-ECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEE-ECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34567899998743222 34577788889999864432 34789999965
No 106
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=54.58 E-value=6 Score=28.08 Aligned_cols=47 Identities=17% Similarity=0.402 Sum_probs=34.0
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-..|..|...+....-...=|..||..|..+. ....|..|++++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE----DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC----CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh----cCCccccCCCcccc
Confidence 457899998877543223466889999997543 24689999999873
No 107
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=53.88 E-value=5.8 Score=25.82 Aligned_cols=39 Identities=38% Similarity=0.820 Sum_probs=26.3
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~ 269 (284)
..+...|.||...-- +..||| -|.+|- ...|..|+..++
T Consensus 6 ~~d~~~C~iC~KTKF----ADG~Gh-~C~yCk--------~r~CaRCGg~v~ 44 (62)
T 2a20_A 6 KGDAPTCGICHKTKF----ADGCGH-NCSYCQ--------TKFCARCGGRVS 44 (62)
T ss_dssp SSCCCCCSSSSCSCC----CSSCCE-EBTTTC--------CEECTTSEEEEE
T ss_pred cCCcchhhhhcccee----ccCCCc-cccccC--------CeeecccCCEee
Confidence 356789999986422 368898 566662 457778876654
No 108
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.01 E-value=20 Score=26.40 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=35.9
Q ss_pred cccccccCCCCC---CCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 221 VTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 221 ~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
-..|..|...+. ..+. ..=|..||..|...... +...|..|++++..
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~--~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG--NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHC--CCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcC--CCCccccCCCCcCc
Confidence 478999988875 3443 56788999999988764 22389999999975
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.48 E-value=6.2 Score=27.85 Aligned_cols=52 Identities=13% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCCcccccccCCCC-C--CC-CeeccCcCcccHHHHHHHHhcCCCCccCCCCcCc
Q 023268 217 SEEDVTTCPICQASP-T--TP-FLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 268 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~-~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~ 268 (284)
...++..|.+|...- . +. .....|.-.|=..|+.....-++.+.||.|....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345678999998653 1 11 1224677777788886543333578999997644
No 110
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.25 E-value=1.4 Score=34.73 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=33.5
Q ss_pred CCcccccccCCCCC----CCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcC
Q 023268 219 EDVTTCPICQASPT----TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEP 267 (284)
Q Consensus 219 ~~~~~C~iC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~ 267 (284)
.++..|.+|...+. ...+...|.|.+|..|-. +...+..+.|-+|.+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 35789999998642 222457899999999973 3334457888888653
No 111
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=50.56 E-value=13 Score=29.41 Aligned_cols=49 Identities=16% Similarity=0.487 Sum_probs=33.3
Q ss_pred CCCcccccccCCCCCCCCeec--cCcCcccHHHHHHHHhc--------CCCCccCCCCcC
Q 023268 218 EEDVTTCPICQASPTTPFLAL--PCQHRYCYYCLRTRCAA--------SPSFRCSRCNEP 267 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~--~CgH~fC~~Ci~~~~~~--------~~~~~CP~C~~~ 267 (284)
+.....|.+|.+--.-- ... .|...||..||...+.. ...+.|=+|.-.
T Consensus 76 DG~~~yC~wC~~Gg~l~-~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVL-MCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TSSBSSCTTTSCCSEEE-ECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCcceeeEecCCCeEE-eeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 34567899998754211 112 68899999999875532 357899999643
No 112
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=49.40 E-value=4.3 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=11.9
Q ss_pred CCccCCCCcCcccccc
Q 023268 258 SFRCSRCNEPVIAMQR 273 (284)
Q Consensus 258 ~~~CP~C~~~~~~~~~ 273 (284)
...||.|+.++...+|
T Consensus 148 ~~~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 148 GGVCPDCGSKVKLIPR 163 (165)
T ss_dssp GGBCTTTCCBEEECCC
T ss_pred CCcCCCCCCcceeCCc
Confidence 3489999998766554
No 113
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.82 E-value=3.1 Score=24.01 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=7.3
Q ss_pred cccccccCCCCCCC
Q 023268 221 VTTCPICQASPTTP 234 (284)
Q Consensus 221 ~~~C~iC~~~~~~p 234 (284)
...||+|+....++
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 35566665554443
No 114
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.76 E-value=3.7 Score=37.52 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=0.0
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHHHHhc-----CCCCccCCCCcC
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAA-----SPSFRCSRCNEP 267 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~~CP~C~~~ 267 (284)
+...|..|...+. ..+....||++||..|-.....- .+...|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4578999987554 22346789999999998654421 123456666443
No 115
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.83 E-value=2.7 Score=26.93 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=30.1
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCc
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 266 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~ 266 (284)
...++..|.+|.+.-..- ....|...|-..|+..-+.. ...+.||.|..
T Consensus 5 ~~~~~~~C~vC~~~g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSSCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCCeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345677899998753222 33567777777777643332 24677888853
No 116
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=47.74 E-value=42 Score=23.04 Aligned_cols=53 Identities=19% Similarity=0.425 Sum_probs=31.5
Q ss_pred CCCcccccccCCCCC---------------CCCeeccCcCcccHHH-HHHHHhc---CCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPT---------------TPFLALPCQHRYCYYC-LRTRCAA---SPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~---------------~p~~~~~CgH~fC~~C-i~~~~~~---~~~~~CP~C~~~~~~ 270 (284)
.+....|++|...+. .|+....|+-.|-..- +..+... +..+.|+.|+..+..
T Consensus 14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 345678888876543 4555556776664432 2223322 234789999988765
No 117
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=47.43 E-value=6.9 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=31.6
Q ss_pred cccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcCc
Q 023268 221 VTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEPV 268 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~~ 268 (284)
+..|.+|.+.-..- ....|...|...|+..-+.. .+.+.||.|...-
T Consensus 2 ~~~C~~C~~~g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCcee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 35799998654332 34677788888888654432 3568999998654
No 118
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.28 E-value=1.9 Score=30.19 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=25.0
Q ss_pred ccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCcccccc
Q 023268 222 TTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIAMQR 273 (284)
Q Consensus 222 ~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~~~~ 273 (284)
..||.|...+.- .=++..|..|-..... ...||.|++++..++.
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~---~afCPeCgq~Le~lkA 46 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSL---QALCPDCRQPLQVLKA 46 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEE---EEECSSSCSCCCEEEE
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCC---cccCcchhhHHHHHHh
Confidence 568888765431 1224457666544332 2378888877765443
No 119
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=46.05 E-value=9.4 Score=30.44 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.0
Q ss_pred CccCCCCcCcccccc
Q 023268 259 FRCSRCNEPVIAMQR 273 (284)
Q Consensus 259 ~~CP~C~~~~~~~~~ 273 (284)
..||+|+.+-..+.+
T Consensus 154 ~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCHHHcee
Confidence 389999987665544
No 120
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.91 E-value=10 Score=26.85 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=33.7
Q ss_pred CCCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcC
Q 023268 217 SEEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 267 (284)
Q Consensus 217 ~~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~ 267 (284)
...++..|.+|.+.-..- ....|.-.|-..|+..-+.. ++.+.||.|...
T Consensus 21 ~d~n~~~C~vC~~~g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345677899998754322 34567777888888665443 247899999754
No 121
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.82 E-value=7.2 Score=26.37 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCCcccccccCCCCCC-C-CeeccCcCcccHHHHHHHHhcC--CCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTT-P-FLALPCQHRYCYYCLRTRCAAS--PSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~-p-~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~C~~~~~~ 270 (284)
..+...|++|...-.. . .....|..-|=..|+....... ..+.||.|......
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3456779999875432 1 1224566667778876543321 46899999876543
No 122
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=44.51 E-value=2.6 Score=29.62 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=19.8
Q ss_pred cccccCCCC-----CCCCeeccCcCcccHHHHHHH
Q 023268 223 TCPICQASP-----TTPFLALPCQHRYCYYCLRTR 252 (284)
Q Consensus 223 ~C~iC~~~~-----~~p~~~~~CgH~fC~~Ci~~~ 252 (284)
-||-|.... ..++....||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 388776532 123233459999999998776
No 123
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.40 E-value=28 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.357 Sum_probs=34.0
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-..|..|...+..... ..=|..||..|..... ...|..|++++..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRF----GTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHH----SCBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeecccccccc----cccccccccccCC
Confidence 56889999887765432 4568999999987765 3478888887764
No 124
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=42.75 E-value=12 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.2
Q ss_pred cccccccCCCCCCCCeecc--CcCcccHH
Q 023268 221 VTTCPICQASPTTPFLALP--CQHRYCYY 247 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~--CgH~fC~~ 247 (284)
...|..|...-.+-+..+. |||++|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 3579999966666678888 99999954
No 125
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=40.69 E-value=25 Score=23.74 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=19.8
Q ss_pred CCeeccCcCcccHHHH-HHHHhc---CCCCccCCCCcCccc
Q 023268 234 PFLALPCQHRYCYYCL-RTRCAA---SPSFRCSRCNEPVIA 270 (284)
Q Consensus 234 p~~~~~CgH~fC~~Ci-~~~~~~---~~~~~CP~C~~~~~~ 270 (284)
|+....|+-.|-..-. ..+... +..+.|+.|+..+..
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 4444455555544322 222221 234789999988765
No 126
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=38.71 E-value=13 Score=30.55 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=10.4
Q ss_pred CccCCCCcCccccc
Q 023268 259 FRCSRCNEPVIAMQ 272 (284)
Q Consensus 259 ~~CP~C~~~~~~~~ 272 (284)
+.||+|+.+-..+.
T Consensus 187 ~~CP~C~~~k~~F~ 200 (202)
T 1yuz_A 187 EKCPICFRPKDTFT 200 (202)
T ss_dssp SBCTTTCCBGGGCE
T ss_pred CCCCCCCCChHHhe
Confidence 69999998755443
No 127
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.67 E-value=11 Score=23.27 Aligned_cols=17 Identities=41% Similarity=0.858 Sum_probs=12.2
Q ss_pred CCCccCCCCcCcccccc
Q 023268 257 PSFRCSRCNEPVIAMQR 273 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~~ 273 (284)
+...||.|+..+-..-|
T Consensus 22 P~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 22 PGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp SSSCCTTTCCSCEECCC
T ss_pred CCcccCccCcEEEEEec
Confidence 46789999988754433
No 128
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=38.49 E-value=3.2 Score=28.78 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=12.8
Q ss_pred cCcCcccHHHHHHHH
Q 023268 239 PCQHRYCYYCLRTRC 253 (284)
Q Consensus 239 ~CgH~fC~~Ci~~~~ 253 (284)
.||+.||..|-..|.
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999987654
No 129
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.76 E-value=24 Score=27.90 Aligned_cols=46 Identities=15% Similarity=0.357 Sum_probs=31.9
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-+.|..|...+....- ..=|..||..|..... ...|..|+.++..
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRF----GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTT----SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCcccccc----ccccccCCCccCC
Confidence 45778888776654322 3568889999987644 3578888888764
No 130
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=37.48 E-value=12 Score=37.17 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=19.5
Q ss_pred cccHHHHHHHHhcC------CCCccCCCCcCcc
Q 023268 243 RYCYYCLRTRCAAS------PSFRCSRCNEPVI 269 (284)
Q Consensus 243 ~fC~~Ci~~~~~~~------~~~~CP~C~~~~~ 269 (284)
..|..|-.++-.-. +...||.|+-.+.
T Consensus 162 ~mC~~C~~EY~dp~~RRfhAqp~aC~~CGP~l~ 194 (761)
T 3vth_A 162 PMCEKCSREYHDPHDRRFHAQPVACFDCGPSLS 194 (761)
T ss_dssp CCCHHHHHHHTCTTSTTTTCTTCCCTTTSCCEE
T ss_pred CCCHHHHHHhcCcccccccCCCCcCCccCCeeE
Confidence 45999999976421 2457999997764
No 131
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.39 E-value=16 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCcccccccCCCCCCC----CeeccCcCcccH
Q 023268 218 EEDVTTCPICQASPTTP----FLALPCQHRYCY 246 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p----~~~~~CgH~fC~ 246 (284)
.....+|..|.+....+ ... -||.+||.
T Consensus 12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~ 43 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELVQQELGSC-RCGYVFCM 43 (67)
T ss_dssp CSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCT
T ss_pred CccCCcchhhCCeecccccCceEe-cCCCEehh
Confidence 34567999998876655 444 79999996
No 132
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.69 E-value=27 Score=25.75 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=34.9
Q ss_pred CcccccccCCCCC---CCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPT---TPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-..|..|...+. .++ ...=|..||..|...... ....|..|++++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFG--QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHC--CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCC--CccChhhcCCccCc
Confidence 4578999988774 343 346788999999887653 12389999998864
No 133
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=34.96 E-value=15 Score=36.47 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=19.9
Q ss_pred cccHHHHHHHHhcC------CCCccCCCCcCccc
Q 023268 243 RYCYYCLRTRCAAS------PSFRCSRCNEPVIA 270 (284)
Q Consensus 243 ~fC~~Ci~~~~~~~------~~~~CP~C~~~~~~ 270 (284)
..|..|-.++-.-. +...||.|+-.+.-
T Consensus 157 ~mC~~C~~EY~dp~dRRfhAqp~aC~~CGP~l~l 190 (772)
T 4g9i_A 157 PMCDFCRSEYEDPLNRRYHAEPTACPVCGPSYRL 190 (772)
T ss_dssp CCCHHHHHHHHCSSSTTTTCTTCCCTTTSCCEEE
T ss_pred CCChhHHHHhCCCCCCCCcCCCCCCccCCceEEE
Confidence 45999999986421 24589999977653
No 134
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.20 E-value=36 Score=22.83 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=10.9
Q ss_pred CCCccCCCCcCccc
Q 023268 257 PSFRCSRCNEPVIA 270 (284)
Q Consensus 257 ~~~~CP~C~~~~~~ 270 (284)
..+.|+.|+..+..
T Consensus 64 ~~~~C~~C~~~f~~ 77 (95)
T 2yt9_A 64 KPYICQSCGKGFSR 77 (95)
T ss_dssp SSBCCSSSCCCBSS
T ss_pred CceECCCccchhCC
Confidence 35789999988765
No 135
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.28 E-value=11 Score=27.56 Aligned_cols=10 Identities=20% Similarity=0.853 Sum_probs=5.6
Q ss_pred ccCCCCcCcc
Q 023268 260 RCSRCNEPVI 269 (284)
Q Consensus 260 ~CP~C~~~~~ 269 (284)
.||+|+.++.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 4666665544
No 136
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=32.76 E-value=10 Score=20.80 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=9.5
Q ss_pred CCccCCCCcCcccc
Q 023268 258 SFRCSRCNEPVIAM 271 (284)
Q Consensus 258 ~~~CP~C~~~~~~~ 271 (284)
++.||+|+......
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 46788888766543
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.56 E-value=54 Score=21.16 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=23.5
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHh
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA 254 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 254 (284)
+-..|..|...+....-...=|..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 45778888776653312345678899988877664
No 138
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.81 E-value=7.9 Score=25.56 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=29.3
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcC
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 267 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~ 267 (284)
.++..|.+|.+.-..- ....|...|-..|+..-+.. ...+.||.|...
T Consensus 6 ~~~~~C~vC~~~g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGGELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCSSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCCCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4567899998653322 33566666667777643322 246788888653
No 139
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.18 E-value=24 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.637 Sum_probs=20.4
Q ss_pred CCcccccccCCCCC--CCCeeccCcCcccH
Q 023268 219 EDVTTCPICQASPT--TPFLALPCQHRYCY 246 (284)
Q Consensus 219 ~~~~~C~iC~~~~~--~p~~~~~CgH~fC~ 246 (284)
.....|..|.+... +|+.. .||.+||.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~C-rCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFEC-RCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEEC-TTCCEECT
T ss_pred ccCccchhhCCeecccCCeEc-CCCCEecc
Confidence 34578999987544 48766 69999997
No 140
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.16 E-value=20 Score=22.84 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=11.4
Q ss_pred CCCccCCCCcCccccc
Q 023268 257 PSFRCSRCNEPVIAMQ 272 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~ 272 (284)
..+.||+|+.+-..+.
T Consensus 35 ~dw~CP~Cg~~K~~F~ 50 (54)
T 4rxn_A 35 DDWVCPLCGVGKDEFE 50 (54)
T ss_dssp TTCBCTTTCCBGGGEE
T ss_pred CCCcCcCCCCcHHHce
Confidence 4689999998654443
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=30.35 E-value=10 Score=24.44 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=28.1
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCcC
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNEP 267 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~~ 267 (284)
++..|.+|.+.-..- ....|...|-..|+..-+.. .+.+.||.|...
T Consensus 4 ~~~~C~vC~~~g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 456788887643222 33566777777777643332 235778888553
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.11 E-value=17 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.539 Sum_probs=31.4
Q ss_pred CCcccccccCCCCC----CCCeeccCcCcccHHHHHHHH--hcCCCCccCCCCcC
Q 023268 219 EDVTTCPICQASPT----TPFLALPCQHRYCYYCLRTRC--AASPSFRCSRCNEP 267 (284)
Q Consensus 219 ~~~~~C~iC~~~~~----~p~~~~~CgH~fC~~Ci~~~~--~~~~~~~CP~C~~~ 267 (284)
.+...|.+|...+. ...+...|.|.+|..|-.... .....+.|-+|.+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 46789999998763 122346788888888865331 11245777777653
No 143
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=29.17 E-value=22 Score=34.66 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=21.5
Q ss_pred cCcCcccHHHHHHHHhcC------CCCccCCCCcCc
Q 023268 239 PCQHRYCYYCLRTRCAAS------PSFRCSRCNEPV 268 (284)
Q Consensus 239 ~CgH~fC~~Ci~~~~~~~------~~~~CP~C~~~~ 268 (284)
--.-..|..|-.++-.-. +...||.|+=.+
T Consensus 64 M~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 64 MAAFPLCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp GGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred ccCCCCChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 344567999999986421 246899999776
No 144
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.04 E-value=78 Score=20.83 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=20.0
Q ss_pred CCcccccccCCCCC-CCCeeccCcCcccH
Q 023268 219 EDVTTCPICQASPT-TPFLALPCQHRYCY 246 (284)
Q Consensus 219 ~~~~~C~iC~~~~~-~p~~~~~CgH~fC~ 246 (284)
....+|..|.+... .++.. -||.+||.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKC-KCGSTFCG 40 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEEC-TTSCEECS
T ss_pred CcCCcChhhCCcccccCeEe-ecCCEecc
Confidence 45679999987544 35555 79999996
No 145
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.87 E-value=60 Score=22.79 Aligned_cols=13 Identities=23% Similarity=0.973 Sum_probs=8.0
Q ss_pred CCccCCCCcCccc
Q 023268 258 SFRCSRCNEPVIA 270 (284)
Q Consensus 258 ~~~CP~C~~~~~~ 270 (284)
.+.|+.|+..+..
T Consensus 94 ~~~C~~C~~~f~~ 106 (124)
T 2dlq_A 94 PYKCSSCSQQFMQ 106 (124)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCccchhCC
Confidence 3567777766543
No 146
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.58 E-value=49 Score=21.72 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=31.3
Q ss_pred CcccccccCCCCCC-CCeeccCcCcccH-HHHHHHHhcCCCCccCCCCcCc
Q 023268 220 DVTTCPICQASPTT-PFLALPCQHRYCY-YCLRTRCAASPSFRCSRCNEPV 268 (284)
Q Consensus 220 ~~~~C~iC~~~~~~-p~~~~~CgH~fC~-~Ci~~~~~~~~~~~CP~C~~~~ 268 (284)
+-..|..|...+.. ++ ...=|..||. .|..... ...|..|+...
T Consensus 26 ~CF~C~~C~~~L~~~~~-~~~~g~~yC~~~cy~~~f----~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGH-AEHEGKPYCNHPCYSAMF----GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTE-EEETTEEEETTTHHHHHS----SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCce-ECcCCeEeeCHHHHHHHh----CccCCCcCCce
Confidence 45789999887665 43 3467889999 6987654 35788887543
No 147
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.37 E-value=24 Score=22.45 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=12.7
Q ss_pred CCCccCCCCcCccccccc
Q 023268 257 PSFRCSRCNEPVIAMQRH 274 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~~~ 274 (284)
..+.||+|+.+-..+...
T Consensus 35 ~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp TTCCCTTTCCCGGGEEEC
T ss_pred CCCcCCCCCCCHHHceec
Confidence 367899999876555443
No 148
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.28 E-value=22 Score=26.07 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=19.8
Q ss_pred cccccccCCCCCCCCeeccCcCcccH
Q 023268 221 VTTCPICQASPTTPFLALPCQHRYCY 246 (284)
Q Consensus 221 ~~~C~iC~~~~~~p~~~~~CgH~fC~ 246 (284)
...|..|...- +.++.+.|||++|.
T Consensus 24 ~~~C~~C~~~~-~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQ-ENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCS-SEEEETTTCCEEEC
T ss_pred CCcCccccCCC-CeeeeeecCccccC
Confidence 56799998764 45688999999994
No 149
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=26.90 E-value=23 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.3
Q ss_pred ccCCCCcCcccccc
Q 023268 260 RCSRCNEPVIAMQR 273 (284)
Q Consensus 260 ~CP~C~~~~~~~~~ 273 (284)
.||+|+.+-..+..
T Consensus 173 ~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 173 LCPACAHPKAHFEL 186 (191)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCCCCcCCHHHHHh
Confidence 89999987554443
No 150
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.31 E-value=28 Score=20.80 Aligned_cols=14 Identities=14% Similarity=0.600 Sum_probs=10.9
Q ss_pred CCCccCCCCcCccc
Q 023268 257 PSFRCSRCNEPVIA 270 (284)
Q Consensus 257 ~~~~CP~C~~~~~~ 270 (284)
..+.|+.|+..+..
T Consensus 31 ~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQ 44 (57)
T ss_dssp CCEECSSSSCEESS
T ss_pred CCcCCCCCcchhCC
Confidence 35789999987764
No 151
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.57 E-value=25 Score=21.54 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=9.9
Q ss_pred CCCccCCCCcCcc
Q 023268 257 PSFRCSRCNEPVI 269 (284)
Q Consensus 257 ~~~~CP~C~~~~~ 269 (284)
..+.||+|+.+-.
T Consensus 29 ~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 29 DDWCCPVCGVSKD 41 (46)
T ss_dssp TTCBCTTTCCBGG
T ss_pred CCCcCcCCCCcHH
Confidence 3579999998644
No 152
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.55 E-value=27 Score=24.21 Aligned_cols=20 Identities=15% Similarity=0.425 Sum_probs=14.6
Q ss_pred CCCccCCCCcCccccccccc
Q 023268 257 PSFRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~~~~~ 276 (284)
..+.||+|+.+-..+...+.
T Consensus 59 ddW~CPvCga~K~~F~~i~~ 78 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDFEMVEV 78 (81)
T ss_dssp TTCCCTTTCCCGGGEEEECC
T ss_pred CCCcCCCCCCCHHHcEEccc
Confidence 36799999997766665543
No 153
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.24 E-value=21 Score=28.56 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred CcccccccCCCCCC---CCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCccc
Q 023268 220 DVTTCPICQASPTT---PFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPVIA 270 (284)
Q Consensus 220 ~~~~C~iC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~~~ 270 (284)
+-+.|..|...+.. ++ ...=|..||..|....... ...|..|++++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGN--SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHSC--CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceE-EEeCCcccccccccccccc--CCccccCCCcccc
Confidence 45788889877653 43 3456889999998776531 1269999988864
No 154
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.05 E-value=26 Score=22.02 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=10.7
Q ss_pred CCCccCCCCcCcccc
Q 023268 257 PSFRCSRCNEPVIAM 271 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~ 271 (284)
..+.||+|+.+-..+
T Consensus 34 ~dw~CP~Cg~~K~~F 48 (52)
T 1yk4_A 34 DDWVCPLCGAPKSEF 48 (52)
T ss_dssp TTCBCTTTCCBGGGE
T ss_pred CCCcCCCCCCCHHHc
Confidence 367899999865443
No 155
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.76 E-value=63 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.4
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCCCcCc
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRCNEPV 268 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~~~ 268 (284)
+-..|..|...+....-...=|..||..|..... ...|..|+.++
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f----~~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF----GPKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT----CCCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhc----CCcCCCCCCcc
Confidence 4578889987765321235678999999988765 35788998764
No 156
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.39 E-value=16 Score=23.63 Aligned_cols=50 Identities=16% Similarity=0.409 Sum_probs=26.5
Q ss_pred CCCcccccccCCCCC--CCC-eeccCcCcccHHHHHHHHh---cCCCCccCCCCcC
Q 023268 218 EEDVTTCPICQASPT--TPF-LALPCQHRYCYYCLRTRCA---ASPSFRCSRCNEP 267 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~C~~~ 267 (284)
..+...|++|..... ..+ ....|..=|=..|+.-... ....+.||.|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356778999987653 121 1123443344455542211 1246889999653
No 157
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.27 E-value=73 Score=20.83 Aligned_cols=40 Identities=18% Similarity=0.456 Sum_probs=27.4
Q ss_pred Ccccccc--cCCCCCCCCeeccCcCcccHHHHHHHHhcCCCCccCCC
Q 023268 220 DVTTCPI--CQASPTTPFLALPCQHRYCYYCLRTRCAASPSFRCSRC 264 (284)
Q Consensus 220 ~~~~C~i--C~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C 264 (284)
....|.. |.+.-..|+....|+..||. ..... +...|+.=
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~---~HR~~--e~H~C~~~ 52 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCI---KHRHP--LDHDCSGE 52 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCH---HHHST--TSSCCCST
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCc---ccCCc--cCCcCCCC
Confidence 4578988 98766678766679999996 33333 34578743
No 158
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.71 E-value=34 Score=22.11 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=10.6
Q ss_pred CCCccCCCCcCccc
Q 023268 257 PSFRCSRCNEPVIA 270 (284)
Q Consensus 257 ~~~~CP~C~~~~~~ 270 (284)
..+.|+.|+..+..
T Consensus 56 ~~~~C~~C~~~f~~ 69 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQ 69 (82)
T ss_dssp CCEECTTTSCEESS
T ss_pred CCCcCCCcchhhCC
Confidence 35789999887764
No 159
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.35 E-value=60 Score=20.61 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCCcccccccCCCCCCCCeeccCcCcccHHHHHHHHh---cCCCCccCCCCcCccc
Q 023268 218 EEDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA---ASPSFRCSRCNEPVIA 270 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~C~~~~~~ 270 (284)
.+....|.+|...+.... . +..+.. .+..+.|+.|++.+..
T Consensus 14 ~~~~~~C~~C~k~f~~~~-~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKG-N-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHH-H-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHH-H-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 345688999987766542 1 122221 1234789999988764
No 160
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.04 E-value=11 Score=24.60 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=31.4
Q ss_pred CCCcccccccCCCC----CCCCeeccCcCcccHHHHHHHHh-----cCCCCccCCCCcCcc
Q 023268 218 EEDVTTCPICQASP----TTPFLALPCQHRYCYYCLRTRCA-----ASPSFRCSRCNEPVI 269 (284)
Q Consensus 218 ~~~~~~C~iC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~~~CP~C~~~~~ 269 (284)
..++..|.+|...- ..-.....|...|=..|+...+. .++.+.|+.|.....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 45667899998642 11212356666777777764321 235688999976443
No 161
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.04 E-value=37 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.0
Q ss_pred CCCccCCCCcCccc
Q 023268 257 PSFRCSRCNEPVIA 270 (284)
Q Consensus 257 ~~~~CP~C~~~~~~ 270 (284)
..+.||+|+.+-..
T Consensus 35 ~dw~CP~Cg~~K~~ 48 (52)
T 1e8j_A 35 DDWACPVCGASKDA 48 (52)
T ss_dssp TTCCCSSSCCCTTS
T ss_pred CCCcCCCCCCcHHH
Confidence 35789999986443
No 162
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.97 E-value=29 Score=22.01 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCcccccccCCCCCCCCeeccCcCcccHHHHHHHHhc---CCCCccCCCCcCccc
Q 023268 219 EDVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCAA---SPSFRCSRCNEPVIA 270 (284)
Q Consensus 219 ~~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~C~~~~~~ 270 (284)
+....|.+|...+.... . +..+... +..+.|+.|+..+..
T Consensus 7 ~~~~~C~~C~k~f~~~~-~-----------L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKA-A-----------LRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSHH-H-----------HHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCHH-H-----------HHHHHHHcCCCCCEeCCCCCCccCC
Confidence 44567877776555431 1 2222221 234789999988765
No 163
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.63 E-value=22 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=11.7
Q ss_pred CCCccCCCCcCcccccc
Q 023268 257 PSFRCSRCNEPVIAMQR 273 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~~ 273 (284)
....||.|+..+.-.+.
T Consensus 11 ~~~~CPrCn~~f~~~~s 27 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEA 27 (49)
T ss_dssp SCCCCTTTCCCCSSHHH
T ss_pred CceeCCcccccccchHH
Confidence 45788888887764443
No 164
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.52 E-value=1.2e+02 Score=19.84 Aligned_cols=27 Identities=22% Similarity=0.704 Sum_probs=19.8
Q ss_pred CCcccccccCCCCC-CCCeeccCcCcccH
Q 023268 219 EDVTTCPICQASPT-TPFLALPCQHRYCY 246 (284)
Q Consensus 219 ~~~~~C~iC~~~~~-~p~~~~~CgH~fC~ 246 (284)
....+|..|.+... .++.. .||.+||.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC-RCGTTFCG 40 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC-SSSCEECT
T ss_pred CcCCcChhhCCccCccCEEe-ecCCEecc
Confidence 45678999987544 35555 69999996
No 165
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.46 E-value=45 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=13.9
Q ss_pred CCCccCCCCcCcccccccc
Q 023268 257 PSFRCSRCNEPVIAMQRHG 275 (284)
Q Consensus 257 ~~~~CP~C~~~~~~~~~~~ 275 (284)
..+.||+|+.+-..+....
T Consensus 39 ddw~CP~Cga~K~~F~~~~ 57 (70)
T 1dx8_A 39 DSFMCPACRSPKNQFKSIK 57 (70)
T ss_dssp TTCBCTTTCCBGGGEEECC
T ss_pred CCCcCCCCCCCHHHceEcc
Confidence 4679999999766655543
No 166
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=22.26 E-value=43 Score=21.73 Aligned_cols=35 Identities=29% Similarity=0.677 Sum_probs=24.4
Q ss_pred CCCcccccccCCC--CCCCCeeccCcCcccH-HHHHHH
Q 023268 218 EEDVTTCPICQAS--PTTPFLALPCQHRYCY-YCLRTR 252 (284)
Q Consensus 218 ~~~~~~C~iC~~~--~~~p~~~~~CgH~fC~-~Ci~~~ 252 (284)
.+....|.||... ....|....|+-.||. .|...+
T Consensus 8 m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 8 MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 3445789999852 3344567889999998 677643
No 167
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.12 E-value=66 Score=19.52 Aligned_cols=44 Identities=20% Similarity=0.666 Sum_probs=27.0
Q ss_pred cccccCCCCC--CCCeeccCcCcccHHHHHHHHhc--CCCCccCCCCc
Q 023268 223 TCPICQASPT--TPFLALPCQHRYCYYCLRTRCAA--SPSFRCSRCNE 266 (284)
Q Consensus 223 ~C~iC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~~ 266 (284)
.|.+|.+.-. +=..-..|...|=..|+..-+.. ++.+.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4778875432 11123567777888888654432 24688999965
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=21.09 E-value=58 Score=17.75 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=13.3
Q ss_pred CccCCCCcCccccccccc
Q 023268 259 FRCSRCNEPVIAMQRHGV 276 (284)
Q Consensus 259 ~~CP~C~~~~~~~~~~~~ 276 (284)
..||.|++.+-..++...
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~ 21 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC 21 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS
T ss_pred CcCCccCCEEecceeEEE
Confidence 479999999876655544
No 169
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.95 E-value=40 Score=24.36 Aligned_cols=48 Identities=19% Similarity=0.632 Sum_probs=29.9
Q ss_pred CCCcccccccCCCCCC-C-CeeccCcCcccHHHHHHHHhc--CCCCccCCCC
Q 023268 218 EEDVTTCPICQASPTT-P-FLALPCQHRYCYYCLRTRCAA--SPSFRCSRCN 265 (284)
Q Consensus 218 ~~~~~~C~iC~~~~~~-p-~~~~~CgH~fC~~Ci~~~~~~--~~~~~CP~C~ 265 (284)
..++..|.+|.+.-.. + ..-..|+..|-..|+...... ...+.||.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3567789999765432 1 123678888888888755432 2457777664
No 170
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.93 E-value=36 Score=16.45 Aligned_cols=12 Identities=17% Similarity=0.736 Sum_probs=8.1
Q ss_pred CccCCCCcCccc
Q 023268 259 FRCSRCNEPVIA 270 (284)
Q Consensus 259 ~~CP~C~~~~~~ 270 (284)
..|+.|+..+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 467888776653
No 171
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.77 E-value=1e+02 Score=19.51 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=21.0
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHH
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRC 253 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~ 253 (284)
+-..|..|...+....-...=|..||..|.....
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3467777776664332234557778888876654
No 172
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.76 E-value=30 Score=23.19 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCcccccccCCCC---CCCC-eeccCcCcccHHHHHHHHhcCCCCccCCCCc
Q 023268 218 EEDVTTCPICQASP---TTPF-LALPCQHRYCYYCLRTRCAASPSFRCSRCNE 266 (284)
Q Consensus 218 ~~~~~~C~iC~~~~---~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~C~~ 266 (284)
..+...|.+|.+.- .+.. ....|.-.|=..|+.....-++.+.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45677899997642 2221 2256666777788764332235688998864
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.64 E-value=84 Score=20.05 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcccccccCCCCCCCCeeccCcCcccHHHHHHHHh
Q 023268 220 DVTTCPICQASPTTPFLALPCQHRYCYYCLRTRCA 254 (284)
Q Consensus 220 ~~~~C~iC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 254 (284)
+-..|..|...+..-.-...-|..||..|......
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 45677777766554322235677788888766553
No 174
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.14 E-value=89 Score=17.38 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=6.9
Q ss_pred CCCccCCCC
Q 023268 257 PSFRCSRCN 265 (284)
Q Consensus 257 ~~~~CP~C~ 265 (284)
..+.||.|+
T Consensus 37 ~~~~C~~cg 45 (45)
T 2epq_A 37 VGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCcCCC
Confidence 457899985
No 175
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.02 E-value=44 Score=15.95 Aligned_cols=12 Identities=17% Similarity=0.941 Sum_probs=8.9
Q ss_pred CccCCCCcCccc
Q 023268 259 FRCSRCNEPVIA 270 (284)
Q Consensus 259 ~~CP~C~~~~~~ 270 (284)
..|+.|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 468888887754
Done!