Query 023271
Match_columns 284
No_of_seqs 134 out of 247
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 04:01:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023271.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023271hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 66.4 2 0.00014 33.3 3.2 33 63-95 39-75 (137)
2 d1s3za_ d.108.1.1 (A:) Aminogl 36.2 52 0.0038 22.9 6.9 57 59-119 4-62 (147)
3 d1yvoa1 d.108.1.1 (A:4-172) Hy 29.3 28 0.002 25.4 4.4 61 61-123 3-72 (169)
4 d1yr0a1 d.108.1.1 (A:4-166) Ph 26.2 49 0.0036 23.6 5.3 60 61-123 5-73 (163)
5 d2ozga2 d.108.1.10 (A:8-290) P 25.0 93 0.0068 24.7 7.3 79 58-142 2-100 (283)
6 d1vhsa_ d.108.1.1 (A:) Putativ 21.0 1.3E+02 0.0097 21.2 9.3 62 60-122 4-72 (165)
7 d2rnrb1 b.55.1.9 (B:1-108) TFI 18.7 26 0.0019 25.8 2.0 26 56-81 75-102 (108)
8 d1iyka2 d.108.1.2 (A:225-451) 17.9 1.3E+02 0.0093 24.6 6.6 61 60-122 43-113 (227)
9 d2fe7a1 d.108.1.1 (A:3-158) Pr 17.5 1.6E+02 0.012 20.7 7.8 58 61-120 4-67 (156)
10 d1mk4a_ d.108.1.1 (A:) Hypothe 16.5 68 0.005 22.9 4.2 21 61-81 5-25 (157)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=66.39 E-value=2 Score=33.34 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHhhc----cCCCChhhHHHHHHc
Q 023271 63 PKPDDFHGVKILLQTYLD----DTQWDLSGFVDLILA 95 (284)
Q Consensus 63 p~~~DfhgIK~LL~qlf~----~~~~dls~LaDlIl~ 95 (284)
|++-|||-+|++|.-.+. .+.||.|-||.+|=.
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk 75 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK 75 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC
Confidence 556699999999987765 378999999988643
No 2
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=36.21 E-value=52 Score=22.88 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=36.1
Q ss_pred eecCCCCCCHHHHHHHHHHhhccC--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEe
Q 023271 59 VFFDPKPDDFHGVKILLQTYLDDT--QWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTA 119 (284)
Q Consensus 59 effdp~~~DfhgIK~LL~qlf~~~--~~dls~LaDlIl~Q~~vGtvVK~~~dedddvyg~~Sv 119 (284)
+....++.|..++..|.++++... ......+.+.+... ....+|..++ +.+.|++++
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~---~~~vG~~~~ 62 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMAD---GVAIGFADA 62 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEET---TEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEEC---CEEEEEEEE
Confidence 346678889999999999998653 23445566665544 4344444432 457777654
No 3
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.33 E-value=28 Score=25.41 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=38.2
Q ss_pred cCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEecCCCCCCceEEEEeeeCC
Q 023271 61 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTVG--TVVKMEGDDDDTPFSIVTALNLG 123 (284)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf-------~~~~~dls~LaDlIl~Q~~vG--tvVK~~~dedddvyg~~SvLNL~ 123 (284)
+...+.|..+|..+++++. +....+..++...+..+..-+ -+|-.+ .++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeecccccc
Confidence 3456789999999988754 234566777777665543322 333333 345699988775544
No 4
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=26.24 E-value=49 Score=23.64 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=37.3
Q ss_pred cCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEecCCCCCCceEEEEeeeCC
Q 023271 61 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTV--GTVVKMEGDDDDTPFSIVTALNLG 123 (284)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf-------~~~~~dls~LaDlIl~Q~~v--GtvVK~~~dedddvyg~~SvLNL~ 123 (284)
+...++|..+|..++.++. +....+..+..+.+.....- ..+|-.. ++.+.|++++....
T Consensus 5 R~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 5 RDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 4566789999999987753 23456667766666554322 2333322 35688988776654
No 5
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=24.95 E-value=93 Score=24.69 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=47.5
Q ss_pred EeecCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee-----------------
Q 023271 58 FVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTAL----------------- 120 (284)
Q Consensus 58 Feffdp~~~DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGtvVK~~~dedddvyg~~SvL----------------- 120 (284)
|.+...+++|+..|..|+.+.|.....+....-+-+-.++. -|+..+ +-+.|.++++
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~~----~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYRE----QKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEET----TEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEEC----CEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 67778899999999999999997654444334443333322 233322 2344444443
Q ss_pred ---eCCcccCchhHHHHHHHHHHhc
Q 023271 121 ---NLGRYKDHKCIKELKEFLLKVC 142 (284)
Q Consensus 121 ---NL~~~k~~~~i~~L~~yLl~~~ 142 (284)
=..+|+.......|.+.+++.+
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~~ 100 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQEI 100 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHHH
Confidence 3345666666777777777543
No 6
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=21.00 E-value=1.3e+02 Score=21.18 Aligned_cols=62 Identities=6% Similarity=0.058 Sum_probs=41.7
Q ss_pred ecCCCCCCHHHHHHHHHHhhc-------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC
Q 023271 60 FFDPKPDDFHGVKILLQTYLD-------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL 122 (284)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~-------~~~~dls~LaDlIl~Q~~vGtvVK~~~dedddvyg~~SvLNL 122 (284)
++...++|...|..|..++.. ....+..++.+.+.....-+.+.-... +++.+.|++++-+.
T Consensus 4 iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 4 LRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED-ENGNVAAWISFETF 72 (165)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC-TTSCEEEEEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe-cCCceEeeeeeeec
Confidence 455677899999999877542 245667778888777665554444433 34578888876543
No 7
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.72 E-value=26 Score=25.77 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.5
Q ss_pred EEEeecCCCCC--CHHHHHHHHHHhhcc
Q 023271 56 ADFVFFDPKPD--DFHGVKILLQTYLDD 81 (284)
Q Consensus 56 VDFeffdp~~~--DfhgIK~LL~qlf~~ 81 (284)
.-|.|-++..- |.+.||.+|+|++..
T Consensus 75 ~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 75 TNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 67889887653 889999999999853
No 8
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=17.87 E-value=1.3e+02 Score=24.60 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=44.0
Q ss_pred ecCCCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC------CcceEEEecCCCCCCceEEEEeeeC
Q 023271 60 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT------TVGTVVKMEGDDDDTPFSIVTALNL 122 (284)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~~----~~~dls~LaDlIl~Q~------~vGtvVK~~~dedddvyg~~SvLNL 122 (284)
++.+.+.|...+-.||+.|+.+ ..|+-.+++-.++.+. -|-|-|..+ +++.+-.|+|.-+|
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~--~~g~ItDF~SFY~L 113 (227)
T d1iyka2 43 LRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVED--ENGIITDYFSYYLL 113 (227)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEEC--TTSCEEEEEEEEEC
T ss_pred cccCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEEC--CCCcEeEEEEEeec
Confidence 6677888999999999999854 6799999999999874 344555433 33445556655444
No 9
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.47 E-value=1.6e+02 Score=20.68 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=37.1
Q ss_pred cCCCCCCHHHHHHHHHHhhc------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 023271 61 FDPKPDDFHGVKILLQTYLD------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTAL 120 (284)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf~------~~~~dls~LaDlIl~Q~~vGtvVK~~~dedddvyg~~SvL 120 (284)
+...+.|...|-.|++++.. ...++...+...+..++.-..++-... ++.+.|++++.
T Consensus 4 R~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~--~~~ivG~~~~~ 67 (156)
T d2fe7a1 4 RPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLS--EGRPIGYAVFF 67 (156)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEEE--TTEEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEee--CCEEEEEEeEe
Confidence 34567899999999987632 234556677777777766555444432 24588876543
No 10
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=16.49 E-value=68 Score=22.92 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=17.5
Q ss_pred cCCCCCCHHHHHHHHHHhhcc
Q 023271 61 FDPKPDDFHGVKILLQTYLDD 81 (284)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf~~ 81 (284)
+...++|++.|..|+++++..
T Consensus 5 R~~~~~D~~~i~~l~~~~~~~ 25 (157)
T d1mk4a_ 5 RTITSSDYEMVTSVLNEWWGG 25 (157)
T ss_dssp EECCGGGHHHHHHHTTTSSTT
T ss_pred EeCCHHHHHHHHHHHHHHhcC
Confidence 456778999999999998765
Done!