BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023272
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RCF|A Chain A, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|B Chain B, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|C Chain C, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|D Chain D, Carboxysome Shell Protein, Orfa From H. Neapolitanus
 pdb|2RCF|E Chain E, Carboxysome Shell Protein, Orfa From H. Neapolitanus
          Length = 91

 Score = 28.5 bits (62), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 234 WKMAGLPRQASVEHRGMVPGELIL 257
           W+  G PRQ +V+  G +PG+ +L
Sbjct: 28  WEKPGAPRQVAVDAIGCIPGDWVL 51


>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
          Length = 243

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 80  GVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNE 129
           GVF   Y  +   VL   IS R ++     I +K+  P  +PF    TNE
Sbjct: 138 GVF---YFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184


>pdb|2HEU|A Chain A, Atomic Resolution Structure Of Apo-Form Of Rafe From
           Streptococcus Pneumoniae
 pdb|2HEU|B Chain B, Atomic Resolution Structure Of Apo-Form Of Rafe From
           Streptococcus Pneumoniae
 pdb|2HEU|C Chain C, Atomic Resolution Structure Of Apo-Form Of Rafe From
           Streptococcus Pneumoniae
          Length = 401

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 179 NPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKMAG 238
           +P++   + V +  ++  +  KNW+   +T  + + +R         VL +P+ SW +  
Sbjct: 211 DPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFAR-------GDVLMTPNGSWAITA 263

Query: 239 LPRQASVEHRG--MVPGE 254
           +  Q      G  M+PG+
Sbjct: 264 INEQKPNFKIGTFMIPGK 281


>pdb|2HQ0|A Chain A, Structure Of Rafe From Streptococcus Pneumoniae
 pdb|2I58|A Chain A, Crystal Structure Of Rafe From Streptococcus Pneumoniae
           Complexed With Raffinose
 pdb|2I58|B Chain B, Crystal Structure Of Rafe From Streptococcus Pneumoniae
           Complexed With Raffinose
          Length = 388

 Score = 27.3 bits (59), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 179 NPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAVLRSPSKSWKMAG 238
           +P++   + V +  ++  +  KNW+   +T  + + +R         VL +P+ SW +  
Sbjct: 198 DPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFAR-------GDVLMTPNGSWAITA 250

Query: 239 LPRQASVEHRG--MVPGE 254
           +  Q      G  M+PG+
Sbjct: 251 INEQKPNFKIGTFMIPGK 268


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,973,906
Number of Sequences: 62578
Number of extensions: 244015
Number of successful extensions: 785
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)