Query 023272
Match_columns 284
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 04:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74f1 f.23.25.1 (F:1-32) Pet 39.9 13 0.00093 23.0 3.1 14 71-84 14-27 (32)
2 d1r31a1 d.58.20.1 (A:111-220) 24.8 20 0.0015 26.9 2.6 27 171-197 5-31 (110)
3 d2hthb1 b.55.1.12 (B:3-131) Va 14.0 24 0.0018 26.2 0.8 45 95-147 30-74 (129)
4 d1c16a2 d.19.1.1 (A:1-180) Cla 13.8 54 0.0039 24.6 2.8 31 152-182 1-32 (164)
5 d1t7va2 d.19.1.1 (A:5-183) Zin 12.3 72 0.0052 23.8 3.2 32 152-183 2-34 (179)
6 d1v54d_ f.23.1.1 (D:) Mitochon 11.5 29 0.0021 27.2 0.6 49 42-93 52-100 (144)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 10.7 1.3E+02 0.0095 17.6 3.2 18 62-81 2-19 (27)
8 d2p0ma2 b.12.1.1 (A:2-112) 15- 10.2 1E+02 0.0073 21.5 3.2 24 152-175 1-24 (111)
9 d1mhca2 d.19.1.1 (A:1-181) Cla 9.8 95 0.0069 23.2 3.1 31 152-182 1-32 (181)
10 d1k5na2 d.19.1.1 (A:1-181) Cla 9.3 93 0.0068 23.3 2.9 31 152-182 1-32 (181)
No 1
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=39.94 E-value=13 Score=22.99 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 023272 71 LLLVLAWGVGVFML 84 (284)
Q Consensus 71 lLLvLAWGvGilmL 84 (284)
-|.+..||+|.|+|
T Consensus 14 glifvgwglgalll 27 (32)
T d2e74f1 14 GLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHh
Confidence 35677999999876
No 2
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=24.77 E-value=20 Score=26.89 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=24.1
Q ss_pred ceeEeeecChhhHHHHHHHHHHHhhhc
Q 023272 171 ELQVQGVDNPVLLRKVIVTEAAKVIQN 197 (284)
Q Consensus 171 ~lqi~GV~~p~~fRk~Vl~~~s~~~~~ 197 (284)
.||+.+|.||..+|+.|+.++.++.+.
T Consensus 5 QIql~~v~d~~~a~~~i~~~k~~l~~~ 31 (110)
T d1r31a1 5 QVQIVGIQDPLNARLSLLRRKDEIIEL 31 (110)
T ss_dssp EEEEESCSCHHHHHHHHHHTHHHHHHH
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999988743
No 3
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.00 E-value=24 Score=26.24 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=31.4
Q ss_pred hhccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchh
Q 023272 95 KKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCL 147 (284)
Q Consensus 95 rkdi~srkLyvT~~~IVYKvsRPs~~P~~Gv~r~Ek~vpL~~V~DiiieQG~L 147 (284)
|..+.+=++|||.+-+||-=+.+.-- =-.+||..|.++=++|+-+
T Consensus 30 k~~~~~G~l~LTthRli~~~~~~~~~--------s~~lpl~~i~~~e~~~~~f 74 (129)
T d2hthb1 30 KIKFDAGTLLLSTHRLIWRDQKNHEC--------CMAILLSQIVFIEEQAAGI 74 (129)
T ss_dssp SSCCCCEEEEEESSEEEEEETTCCSC--------CEEEEGGGEEEEEEECCTT
T ss_pred cccccceEEEEEeceEEEecCCCCce--------EEEEEhHHceeeeEEcccc
Confidence 33467889999999999943333211 1258999998888888753
No 4
>d1c16a2 d.19.1.1 (A:1-180) Class I MHC homolog {Mouse (Mus musculus), t22 [TaxId: 10090]}
Probab=13.82 E-value=54 Score=24.64 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.6
Q ss_pred ceeEEEEeeeecCCCCC-CCceeEeeecChhh
Q 023272 152 GIHTFRVESIARGKAAP-VDELQVQGVDNPVL 182 (284)
Q Consensus 152 Gihs~riE~ig~~k~~~-~D~lqi~GV~~p~~ 182 (284)
|-||||.=-.+.++|+| .-+..++|.+|...
T Consensus 1 GsHSL~Y~~T~vs~p~~g~P~f~~vg~vDd~q 32 (164)
T d1c16a2 1 GSHSLRYFYTAVSRPGLGEPWFIIVGYVDDMQ 32 (164)
T ss_dssp CCEEEEEEEEEECCSSSSCCEEEEEEEETTEE
T ss_pred CCceEeEEEEEecCCCCCCcEEEEEEEECCEE
Confidence 67999999999998876 44677778777643
No 5
>d1t7va2 d.19.1.1 (A:5-183) Zinc-alpha-2-glycoprotein, ZAG {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.28 E-value=72 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=24.4
Q ss_pred ceeEEEEeeeecCCCCC-CCceeEeeecChhhH
Q 023272 152 GIHTFRVESIARGKAAP-VDELQVQGVDNPVLL 183 (284)
Q Consensus 152 Gihs~riE~ig~~k~~~-~D~lqi~GV~~p~~f 183 (284)
|=||||--..+.++|+| .-+..++|.+|-..|
T Consensus 2 GsHsL~y~~T~~s~~~~~~p~f~~vg~vDd~qf 34 (179)
T d1t7va2 2 GRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQF 34 (179)
T ss_dssp CEEEEEEEEEEESSCCTTSCSEEEEEEETTEEE
T ss_pred CcceEEEEEEEecCCCCCCceEEEEEEECCEEE
Confidence 67999999999998877 446777777765443
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.50 E-value=29 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=27.8
Q ss_pred ccceehhhcHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023272 42 SEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYV 93 (284)
Q Consensus 42 ~e~ILY~ASFeE~~~~~vkYdt~~W~liSlLLvLAWGvGilmLLylPirryv 93 (284)
|-+-||.+||.+.-...- ..|-.|-.+- ...++|+|+-+++++=+|.|+
T Consensus 52 EKkalYrisF~~t~ae~~-~p~gewK~v~--g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 52 EKVELYRLKFKESFAEMN-RSTNEWKTVV--GAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp HHHHHHHHHCSSCHHHHT-CCCSHHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccccc-CCCCchhHHH--HHHHHHHHHHHHHHHHHHHHc
Confidence 567899999988766653 3466675543 223444555333333344443
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.67 E-value=1.3e+02 Score=17.57 Aligned_cols=18 Identities=33% Similarity=0.999 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023272 62 DTIIWFSISLLLVLAWGVGV 81 (284)
Q Consensus 62 dt~~W~liSlLLvLAWGvGi 81 (284)
++.-|+ +||.|+.|.|..
T Consensus 2 ~~lgwv--~llvvftwsiam 19 (27)
T d2e74h1 2 DVLGWV--ALLVVFTWSIAM 19 (27)
T ss_dssp HHHHHH--HHHHHHHHHHHH
T ss_pred cchhHh--HHHHHhhheeee
Confidence 456675 688899998754
No 8
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=10.19 E-value=1e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=19.6
Q ss_pred ceeEEEEeeeecCCCCCCCceeEe
Q 023272 152 GIHTFRVESIARGKAAPVDELQVQ 175 (284)
Q Consensus 152 Gihs~riE~ig~~k~~~~D~lqi~ 175 (284)
|.|+++|.|-...+|+--..|.|+
T Consensus 1 g~Y~I~v~TG~~~~AGT~a~V~i~ 24 (111)
T d2p0ma2 1 GVYRVCVSTGASIYAGSKNKVELW 24 (111)
T ss_dssp CEEEEEEEECSSSSCCCSSEEEEE
T ss_pred CeEEEEEEECCCCCCCCCCeEEEE
Confidence 789999999999888776666553
No 9
>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
Probab=9.78 E-value=95 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=22.5
Q ss_pred ceeEEEEeeeecCCCCCC-CceeEeeecChhh
Q 023272 152 GIHTFRVESIARGKAAPV-DELQVQGVDNPVL 182 (284)
Q Consensus 152 Gihs~riE~ig~~k~~~~-D~lqi~GV~~p~~ 182 (284)
|-|||+.-..+.++|+|. -+..++|.+|-..
T Consensus 1 GsHSL~y~~T~~s~~~~g~P~f~~vg~vDd~~ 32 (181)
T d1mhca2 1 GSHSLRYFHTAVSRPGRGEPQYISVGYVDDVQ 32 (181)
T ss_dssp CCEEEEEEEEEESSCCTTSCSEEEEEEETTEE
T ss_pred CCceeeEEEEEecCCCCCCCeEEEEEEECCeE
Confidence 679999999998888763 4566667666543
No 10
>d1k5na2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Human (Homo sapiens), HLA-B27 [TaxId: 9606]}
Probab=9.31 E-value=93 Score=23.32 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=22.6
Q ss_pred ceeEEEEeeeecCCCCC-CCceeEeeecChhh
Q 023272 152 GIHTFRVESIARGKAAP-VDELQVQGVDNPVL 182 (284)
Q Consensus 152 Gihs~riE~ig~~k~~~-~D~lqi~GV~~p~~ 182 (284)
|=|||+.=..+.++|+| .-+..++|.+|-..
T Consensus 1 GsHSL~y~~T~~s~~~~g~P~f~~vg~vDd~q 32 (181)
T d1k5na2 1 GSHSMRYFHTSVSRPGRGEPRFITVGYVDDTL 32 (181)
T ss_dssp CCEEEEEEEEEECCTTSSSCEEEEEEEETTEE
T ss_pred CCceeeEEEEEecCCCCCCCeEEEEEEECCEE
Confidence 67999999999888876 34566677766543
Done!