BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023276
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 137/276 (49%), Gaps = 36/276 (13%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ + + + F+
Sbjct: 281 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLP 334
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
+ +G F P P L + F KV GP+S G
Sbjct: 335 FTTPPFGFF-----------PSSSYP------------LPNSTF--AHFASKVAGPLSYG 369
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILV 185
L L++ N +P+V FNY+ DL CV G E +
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+
Sbjct: 430 NILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVV 485
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 486 DGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 137/276 (49%), Gaps = 36/276 (13%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ + + + F+
Sbjct: 281 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLP 334
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
+ +G F P P L + F KV GP+S G
Sbjct: 335 FTTPPFGFF-----------PSSSYP------------LPNSTF--AHFASKVAGPLSYG 369
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILV 185
L L++ N +P+V FNY+ DL CV G E +
Sbjct: 370 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 429
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+
Sbjct: 430 NILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVV 485
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 486 DGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 130/275 (47%), Gaps = 36/275 (13%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI VVL P VGQ + DNP N I + P P+E S + V+GIT NF S
Sbjct: 282 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPSTVTVLGITS-----------NFYQCS 330
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
S + +PP P L + F + KV GP+S G
Sbjct: 331 FSSLPF-----------SIPPFAFFPNP-------TYPLPNSTF--AHFVNKVPGPLSYG 370
Query: 127 HLELRT-RNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILV 185
+ L + + P+V FNY+ DL CV G E +
Sbjct: 371 SITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGF 430
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
++ LP + + E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+
Sbjct: 431 DILGIP----LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVV 486
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 280
DGSTF YSP ++PQ +MLGRY+G +IL ER A+
Sbjct: 487 DGSTFPYSPASHPQGFYLMLGRYVGSKILQERSAA 521
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 115 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 174
+ ++ PV+ G ++L T NP D P + Y D+ +Q
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF 471
Query: 175 XYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG-------GCQVG 227
P + R ++E + RD TI+H G G G
Sbjct: 472 VIR--------------PFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 228 KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 267
VVD D KV GVD LR++DGS ++P + Q + ++G+
Sbjct: 518 -VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 102/283 (36%), Gaps = 55/283 (19%)
Query: 6 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 65
H I V++D P VG+ + D+P + + P+ Q I F
Sbjct: 292 HGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIF--------------- 336
Query: 66 SPSPRDYGMFSPKIG-QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILE-KVMGPV 123
+P + G+ P + VP T EN GF L V
Sbjct: 337 --TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTEN-----------GFSLTPNVTHAR 383
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYESMSV 181
S G + LR+R+ D P V YF +PE D++ V G E +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAR-------------EIAAQ 430
Query: 182 PILVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH------DY 234
P + T L P + L+ + R T T++H G ++G V D +
Sbjct: 431 PAMAEWTGR---ELSPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 235 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
+V GV LRV D S NP TVMM+G I S R
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 102/283 (36%), Gaps = 55/283 (19%)
Query: 6 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 65
H I V++D P VG+ + D+P + + P+ Q I F
Sbjct: 292 HGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIF--------------- 336
Query: 66 SPSPRDYGMFSPKIG-QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILE-KVMGPV 123
+P + G+ P + VP T EN GF L V
Sbjct: 337 --TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTEN-----------GFSLTPNVTHAR 383
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYESMSV 181
S G + LR+R+ D P V YF +PE D++ V G E +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAR-------------EIAAQ 430
Query: 182 PILVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH------DY 234
P + T L P + L+ + R T T++H G ++G V D +
Sbjct: 431 PAMAEWTGR---ELSPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 235 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
+V GV LRV D S NP TVMM+G I S R
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 101/283 (35%), Gaps = 55/283 (19%)
Query: 6 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 65
H I V++D P VG+ + D+P + + P+ Q I F
Sbjct: 292 HGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIF--------------- 336
Query: 66 SPSPRDYGMFSPKIG-QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILE-KVMGPV 123
+P + G+ P + VP T EN GF L V
Sbjct: 337 --TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTEN-----------GFSLTPNVTHAR 383
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYESMSV 181
S G + LR+R+ D P V YF +PE D++ V G E +
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAR-------------EIAAQ 430
Query: 182 PILVNMTASAPVNLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH------DY 234
P + T L P + L+ + R T T +H G ++G V D +
Sbjct: 431 PAMAEWTGR---ELSPGVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPEL 487
Query: 235 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
+V GV LRV D S NP TVMM+G I S R
Sbjct: 488 RVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 422 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 478
Query: 258 PQATVMMLGRYMGVRILSE 276
P T+ L RI+ +
Sbjct: 479 PFVTITALAERNVERIIKQ 497
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D +H GGC +GK D +V G L V DGS S G +
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVD 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D ++ GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 426 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 482
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 483 PFVTITALAERNVERIIKQDVTAS 506
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 194 NLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGS 248
LLP N++ ++ F +V+T H G C++GK VVD + ++ +D L V+D S
Sbjct: 437 ELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDAS 495
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 198 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 257
R+ T L+ F D +H GGC +GK D +V G L V DGS S G
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVL 480
Query: 258 PQATVMMLGRYMGVRILSERLASN 281
P T+ L RI+ + + ++
Sbjct: 481 PFVTITALAERNVERIIKQDVTAS 504
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 219 HYHGGCQVGK-----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
H+ +G VVD + KV G + L ++D + P NPQ T+M +I
Sbjct: 480 HWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKI 539
Query: 274 LS 275
L+
Sbjct: 540 LA 541
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 229 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 275
VVD + KV G + L ++D + P NPQ T+M +IL+
Sbjct: 490 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 536
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 218 WHYHGGC-----QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 272
WH C ++G VVD KV G LRVIDGS P T + VM + M ++
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALK 574
Query: 273 I 273
+
Sbjct: 575 V 575
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 219 HYHG--GC-----QVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGV 271
+YHG C ++G VVD+ +V GV LRVIDGS P T + VM + M +
Sbjct: 514 NYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMAL 569
Query: 272 RI 273
+I
Sbjct: 570 KI 571
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 189 ASAPVNLLPRHSNASTSLEQ---FCRDTVMT-IWHYHGGCQVGKVVDHDYKVLG 238
AS P+ LLP++ NA+ +++Q DT ++ + HG C G V Y + G
Sbjct: 394 ASRPLRLLPQYRNATITVQQADDAYEDTALSPLITTHGFCVTGGVFTSIYDISG 447
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 176 YESMSVPI-LVNMTASAPVNLLPRHSNASTSLEQF--CRDTVMTIWHYHGGCQVGKVVDH 232
Y S+++ + L ++ + + + S++S +L F R+ V+ IW H Q+ ++
Sbjct: 44 YRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINF 103
Query: 233 DYKVLGVDALRVIDGSTFYYSPGTNPQATV 262
+ K++G Y S NP+++V
Sbjct: 104 EGKIIG----------KAYTSSMCNPRSSV 123
>pdb|2O8S|A Chain A, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
pdb|2O8S|B Chain B, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 39 VSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQ----LSKVPPKQRTP 92
VS Q + + G SG N +GGS + Y + S IG+ +SK P R
Sbjct: 26 VSHKQAATLCRQGRTCALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARET 85
Query: 93 EAIAEAIENMKALDD 107
E E I ++K++DD
Sbjct: 86 EYYREKIGSVKSIDD 100
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 89/263 (33%), Gaps = 59/263 (22%)
Query: 36 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ-------------- 81
PV L+++VG + Y+E + A + +D FSP +GQ
Sbjct: 347 PVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKD--PFSP-LGQPHFELDFVCMFGTA 403
Query: 82 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSV 141
P +T + + ++ ++ + DP G + L + +P P++
Sbjct: 404 FQWHFPTPKTGDHLTVVVDLVRPISDP-----------------GEVTLNSADPFQQPNI 446
Query: 142 TFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYES---MSVPILVNMTASAPVNLLPR 198
N+F D+ +G ES +P+
Sbjct: 447 NLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMPL--------------- 491
Query: 199 HSNASTSLEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKVLGVDALRVIDGSTFYYS 253
++ + + D T +H G ++ K VVD KV G+ LRV D S
Sbjct: 492 --DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPII 549
Query: 254 PGTNPQATVMMLGRYMGVRILSE 276
P Q +V +G I +E
Sbjct: 550 PDCRIQNSVYAVGEKCADMIKAE 572
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 250 FYYSPGTNPQATVMMLGRYMGVRI 273
FYY PG++P +V+M + +GV +
Sbjct: 4 FYYLPGSSPCRSVIMTAKAVGVEL 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,425,957
Number of Sequences: 62578
Number of extensions: 341621
Number of successful extensions: 736
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 38
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)