BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023276
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 293 bits (751), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 187/276 (67%), Gaps = 6/276 (2%)
Query: 8 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSP 67
I VVL+ VG+GM+DNPMN I VPS P+E SLIQ VGIT+ G Y+EA++G G SP
Sbjct: 318 IPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSP 374
Query: 68 SP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVST 125
YG+ S K S +P KQR PEA I K AF G FILEK+ P+S
Sbjct: 375 ESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISR 434
Query: 126 GHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPIL 184
GHL L N +DNPSVTFNYFK P DLQRCV+ I + K++ S F + + + +V +
Sbjct: 435 GHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKM 494
Query: 185 VNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRV 244
++++ A +NL P+ N + S+ QFC+DTV+TIWHYHGGC VGKVV + KVLGVD LRV
Sbjct: 495 LSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRV 554
Query: 245 IDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 280
IDGSTF SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 555 IDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 200 bits (509), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 154/272 (56%), Gaps = 35/272 (12%)
Query: 8 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGE-NFAGGS 66
I V LDQP VG + DNP N I + PVP+E SLIQVVG+T+ G+++EAAS FA
Sbjct: 314 IPVALDQPHVGDFVYDNPRNGISIVPPVPMENSLIQVVGVTEDGAFLEAASNVIPFA--- 370
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
SP + P +P + I+EK++GPVS G
Sbjct: 371 ---------SPLHSVFIRAPA---SPLYVPVTT---------------IMEKILGPVSIG 403
Query: 127 HLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVN 186
L L + + NP V FNYF +P+DL+RCV G I +I+ S++ F
Sbjct: 404 LLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDFMIREWFGNRRFR 463
Query: 187 MTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVID 246
AP LP + + FCR TV TIWHYHGG VGKVVD D KV+GV++LR++D
Sbjct: 464 FVG-AP---LPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVD 519
Query: 247 GSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278
GSTF SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct: 520 GSTFNISPGTNPQATLMMLGRYMGLKMLRERM 551
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 144/276 (52%), Gaps = 36/276 (13%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ +F S
Sbjct: 308 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN-----------DFYQCS 356
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
S + PP P L + F KV GP+S G
Sbjct: 357 FSSLPF-----------TTPPFSFFPST-------SYPLPNSTF--AHFASKVAGPLSYG 396
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILV 185
L L++ N +P+V FNY+ P DL CV G+ I +++ + + +K E +
Sbjct: 397 SLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGF 456
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ LP+ + E FCR++V + WHYHGGC VGKV+D D++V G+DALRV+
Sbjct: 457 NILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVV 512
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 513 DGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 36/276 (13%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ +F S
Sbjct: 308 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN-----------DFYQCS 356
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
S + PP P A L + F KV GP+S G
Sbjct: 357 FSSLPF-----------TTPPFGFFPSA-------SYPLPNSTF--AHFASKVAGPLSYG 396
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILV 185
L L++ N +P+V FNY+ DL CV G+ I +++ + + +K E +
Sbjct: 397 SLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGF 456
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ LP+ + E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+
Sbjct: 457 NILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVV 512
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281
DGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 513 DGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 147/282 (52%), Gaps = 44/282 (15%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI+VV P VGQ + DNP N I + P P+E S + V+GIT Y + S F S
Sbjct: 310 NISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-DFYQCSISSLPF---S 365
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
+P +G F P P L + F I+ KV GP+S G
Sbjct: 366 TAP--FGFF-----------PNPTYP------------LPNTTF--AHIVNKVPGPLSHG 398
Query: 127 HLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM----SV 181
+ L+ T + P+VTFNY+ DL CV G+ I + + S + +K E +
Sbjct: 399 TVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGF 458
Query: 182 PILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDA 241
IL P LP + + E FCR+ V + WHYHGGC VG+V+D D++V G++A
Sbjct: 459 DIL-----GIP---LPENQTDDAAFETFCREAVASYWHYHGGCLVGEVLDDDFRVTGINA 510
Query: 242 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 283
LRV+DGSTF +P ++PQ +MLGRYMG +IL ERLAS ++
Sbjct: 511 LRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLASEEA 552
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 36/278 (12%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI+VV P VGQ ++DNP N I + P P+E S + V+GIT +F S
Sbjct: 310 NISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS-----------DFYQCS 358
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
S + PP P L + F I+ KV GP+S G
Sbjct: 359 LSSLPF-----------DTPPFSLFPTT-------SYPLPNQTF--AHIVSKVPGPLSAG 398
Query: 127 HLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILV 185
L L++ N + P+V FNY +P DL CV G+ I + + + +K + +
Sbjct: 399 SLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGF 458
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ + LP + + E+FCRDTV + WHYHGG VGKV+D +++V G++ALRV+
Sbjct: 459 NILGTP----LPENQTDDAAFEKFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVV 514
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 283
DGSTF +P ++PQ +MLGRY+G +I+ ER AS ++
Sbjct: 515 DGSTFPATPASHPQGFYLMLGRYVGTKIVQERSASGEA 552
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 141/278 (50%), Gaps = 36/278 (12%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NI+VV P VGQ + DNP N I + P P+E S + V+GIT +F S
Sbjct: 309 NISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-----------DFYQCS 357
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
S + PP P L + F I+ KV GP+S G
Sbjct: 358 ISSLPF-----------DTPPFSFFPTT-------SYPLPNQTF--AHIVNKVPGPLSHG 397
Query: 127 HLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILV 185
+ L + + P+V FNY+ DL CV G+ + +++ + + +K E +
Sbjct: 398 TVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGF 457
Query: 186 NMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVI 245
N+ LP + + E FCR++V + WHYHGGC VGKV+D ++V G++ALRV+
Sbjct: 458 NILGIP----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVV 513
Query: 246 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 283
DGSTF +P ++PQ +MLGRYMG++IL ER AS D+
Sbjct: 514 DGSTFPSTPASHPQGFYLMLGRYMGIQILQERSASEDA 551
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 131/281 (46%), Gaps = 54/281 (19%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS 66
NITVV P VGQ + +NP N I P P+E S++ V+GI
Sbjct: 309 NITVVQPNPYVGQFLYNNPRNFINNFPPNPIEASVVTVLGIRS----------------- 351
Query: 67 PSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTG 126
DY S S PP P L + F I+ +V GP+S G
Sbjct: 352 ----DYYQVSLSSLPFS-TPPFSLFPTT-------SYPLPNSTF--AHIVSQVPGPLSHG 397
Query: 127 HLELRTRNP-NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFK---------Y 176
+ L + + P++ FNY+ DL CV G+ + ++ +K+ +K +
Sbjct: 398 SVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGF 457
Query: 177 ESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKV 236
+ VP LP + S E FC D V + WHYHGG VGKV+D ++V
Sbjct: 458 NYLGVP-------------LPENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRV 504
Query: 237 LGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
+G+ ALRV+D STF Y P ++PQ +MLGRY+G++IL ER
Sbjct: 505 MGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +II + KF+ +S I
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREISPGI 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------DCQTDEQLDEFVRNHAETAYHPCGTCKMGSDEMAVVDDEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPLIITGNLNATTIMIG 524
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P ++P++ FNY +D Q I +II + K++ +S I
Sbjct: 393 SRGHVHIKSRDPREHPAILFNYMSTGQDWQEFRDAIRITREIINQPALDKYRGREISPGI 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L+ F RD T +H G C++G VVD + +V GV
Sbjct: 453 TC---------------QTDEQLDAFVRDHAETAFHPCGTCKMGYDEMAVVDGEGRVHGV 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 ENLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ L++R+P+ +P++ FNY +D Q I +I+ + K++ +S I
Sbjct: 393 SRGHVRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGI 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
+ L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I T +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRTTREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDAEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH++L++++P ++PS+ FNY +D Q I +I+ + ++ E +S
Sbjct: 397 SRGHIKLKSKDPFEHPSILFNYMSTEQDWQEFRAAIRITREIMHQPALDPYRGEEIS--- 453
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
P L + T L+ F R+ T +H C++G+ VVDH +V G+
Sbjct: 454 --------PGKQL----STDTQLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGL 501
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
LRV+D S N AT +M+ + +I
Sbjct: 502 QGLRVVDASIMPLIITGNLNATTIMMAEKIADQI 535
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ L++R+P+ +P++ FNY +D Q I +I+ + K++ +S
Sbjct: 393 SRGHVRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
+ L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ +RV+D S N AT +M+G M
Sbjct: 498 EGVRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + LR+ +P P + FNY P+D I +I +F F+ + +S
Sbjct: 386 SRGSVTLRSPDPKAKPVIRFNYMSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEIS--- 442
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVL 237
P + H + L+ F RD + +H G C++G+ VVD + +V+
Sbjct: 443 --------PGS----HVQSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVI 490
Query: 238 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 274
GVD LRV D S F N A +M G IL
Sbjct: 491 GVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHIL 527
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + L++R+P +PS+ FNY +D Q GI +I+ + ++ +S +
Sbjct: 395 SRGRIHLKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGV 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
V A L++F R+ T +H C++G VVD +V G+
Sbjct: 455 SVQSDA---------------ELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGM 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ LRV+D S N AT +M+ + RI
Sbjct: 500 EGLRVVDASIMPLIITGNLNATTIMMAEKIADRI 533
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + L++R+P +PS+ FNY +D Q GI +I+ + ++ +S +
Sbjct: 395 SRGRIHLKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGV 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
V A L++F R+ T +H C++G VVD +V G+
Sbjct: 455 SVQSDA---------------ELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGM 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ LRV+D S N AT +M+ + RI
Sbjct: 500 EGLRVVDASIMPLIITGNLNATTIMMAEKIADRI 533
>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=betA PE=3 SV=1
Length = 561
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + L++R+P +PS+ FNY +D Q GI +I+ + ++ +S +
Sbjct: 395 SRGRIHLKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGV 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
V A L++F R+ T +H C++G VVD +V G+
Sbjct: 455 NVQSDA---------------ELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGM 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ LRV+D S N AT +M+ + RI
Sbjct: 500 EGLRVVDASIMPLIITGNLNATTIMMAEKIADRI 533
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 21/159 (13%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G++ LR+ +P+D+P + FNY PED ++ + +I K+F F+
Sbjct: 385 SRGNVTLRSADPHDDPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFR-------- 436
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVL 237
P + ++ F R+ + + +H G C++G VVD + +V+
Sbjct: 437 -------GPEIQPGENIETDEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVI 489
Query: 238 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276
GV+ LRV D S F + N +M G IL +
Sbjct: 490 GVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGK 528
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + L++R+P +PS+ FNY +D Q GI +I+ + ++ +S +
Sbjct: 395 SRGRIHLKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGV 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
V A L++F R+ T +H C++G VVD +V G+
Sbjct: 455 NVQSDA---------------ELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGM 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ LRV+D S N AT +M+ + RI
Sbjct: 500 EGLRVVDASIMPLIITGNLNATTIMMAEKIADRI 533
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P + FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P + FNY +D Q I +I+ + +++ +S +
Sbjct: 393 SRGHVRIKSRDPHQHPGILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++LR+R+PND+PS+ FNY E D + I +I+ + +++ +
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGREL---- 449
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
N A + L+ F R T +H C++G VVD + +V G+
Sbjct: 450 --NPGADC---------RSDKELDTFVRARAETAFHPSCSCKMGYDDMAVVDDEGRVHGL 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
D LRV+D S N A +M+ + RI
Sbjct: 499 DGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R P+ +P++ FNY +D Q I +I+ + ++ +S +
Sbjct: 393 SRGHVRIKSRAPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYHGREISPGV 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYM 269
+ LRV+D S N AT +M+G M
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S GH+ +++R+P+ +P++ FNY +D Q I +I+ + +++ +S
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT 452
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
L++F R+ T +H G C++G VVD + +V G+
Sbjct: 453 ---------------ECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGL 497
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLG 266
+ LRV+D S N AT +M+G
Sbjct: 498 EGLRVVDASIMPQIITGNLNATTIMIG 524
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 106/282 (37%), Gaps = 53/282 (18%)
Query: 6 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 65
H I V++D P VG+ + D+P + + P+ Q I F
Sbjct: 292 HGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIF--------------- 336
Query: 66 SPSPRDYGMFSPKIG-QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILE-KVMGPV 123
+P + G+ P + VP T EN GF L V
Sbjct: 337 --TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTEN-----------GFSLTPNVTHAR 383
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGISTIEKIIESKSFSKFKYESMSV 181
S G + LR+R+ D P V YF +PE D++ V GI +I + +++ +S
Sbjct: 384 SRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSP 443
Query: 182 PILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHDYK 235
+ + L+ + R T T++H G ++G V +D + +
Sbjct: 444 GV---------------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELR 488
Query: 236 VLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
V GV LRV D S NP TVMM+G I S R
Sbjct: 489 VKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++LR+R+PND+PS+ FNY E D + I +I+ + +++ +
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGREL---- 449
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
N A + L+ F R T +H C++G VVD + +V G+
Sbjct: 450 --NPGADC---------KSDKELDAFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGL 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
D LRV+D S N A +M+ + +I
Sbjct: 499 DGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++LR+R+PND+PS+ FNY E D + I +I+ + +++ +
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGREL---- 449
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
N A + L+ F R T +H C++G VVD + +V G+
Sbjct: 450 --NPGADC---------KSDKELDAFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGL 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
D LRV+D S N A +M+ + +I
Sbjct: 499 DGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++LR+R+PND+PS+ FNY E D + I +I+ + +++ +
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGREL---- 449
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
N A + L+ F R T +H C++G VVD + +V G+
Sbjct: 450 --NPGADC---------KSDKELDAFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGL 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
D LRV+D S N A +M+ + +I
Sbjct: 499 DGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++LR+R+PND+PS+ FNY E D + I +I+ + +++ +
Sbjct: 394 SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGREL---- 449
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
N A + L+ F R T +H C++G VVD + +V G+
Sbjct: 450 --NPGADCKTD---------KELDAFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGL 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
D LRV+D S N A +M+ + +I
Sbjct: 499 DGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + LR +P +P + FNY PED ++ + +I K+F +++
Sbjct: 385 SRGSVTLRASDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYR-------- 436
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVL 237
P ++ F R+ + + +H G C++G VVD + +V+
Sbjct: 437 -------GPEIQPGERVQTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVI 489
Query: 238 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
GVD LRV D S F + N A +M G IL ++
Sbjct: 490 GVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAADHILGKQ 529
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 49/287 (17%)
Query: 7 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------EVSLIQVVGITQFGSYI 54
+I VVLD P VGQ + D+ I PV ++ L ++ T G
Sbjct: 283 DIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTGLG--- 339
Query: 55 EAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGF 114
AS AGG RD ++ P I Q +P +A A++ F+
Sbjct: 340 --ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAINYNGSNAIEMHGFQAHV 387
Query: 115 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF 174
M S G ++LR+R+PND+PS+ FNY E D + I +I+ + ++
Sbjct: 388 ---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRY 444
Query: 175 KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVV 230
+ + N A + L+ F R T +H C++G VV
Sbjct: 445 RGREL------NPGADC---------KSDKELDAFVRARAETAFHPSCSCKMGYDDMAVV 489
Query: 231 DHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
D + +V G++ LRV+D S N A +M+ + +I +
Sbjct: 490 DEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRK 536
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G + L +++P+ PS+ FNY + +D + I +II +F +++ +S
Sbjct: 395 SRGRIRLTSKDPHAAPSILFNYMAKEKDWEEFRDAIRLTREIIAQPAFDRYRGREISPGP 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGV 239
V + L+ F + T +H G C++G+ V D +V G+
Sbjct: 455 DV---------------QSDEELDNFVKQHAETAYHPCGSCRMGEGDMAVTDAQGRVHGL 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ LRV+D S F P N A +ML + RI
Sbjct: 500 EGLRVVDASLFPVIPTGNLNAPTIMLAEKIADRI 533
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++L+++NP D PS+ FNY +D Q GI +I++ + ++ +S I
Sbjct: 395 SRGRVQLKSKNPRDYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGI 454
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
V L++F R+ T +H C++G VVD + +V G+
Sbjct: 455 DV---------------QTDEQLDKFIREHAETAFHPSCSCKMGTDEMAVVDGEGRVHGM 499
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
LRV+D S N A +M+ + +I
Sbjct: 500 QGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 533
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 122 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSV 181
P S G +E+ + NP+D P + FNY D Q I +I+ + +F+ E +
Sbjct: 388 PESRGRVEIVSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQP 447
Query: 182 PILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYK 235
I V A ++Q+ ++ V + +H C++G V+D + +
Sbjct: 448 GINVATDA---------------EIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECR 492
Query: 236 VLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277
V G+ LRV+D S F P N A +M+ IL ++
Sbjct: 493 VRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLILHKQ 534
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 120 MGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM 179
M +S G + L +R+P PS+ FNY +D Q I +IIE + +++ +
Sbjct: 391 MRSMSRGRIRLTSRDPKAAPSILFNYMSHDKDWQEFRDAIRITREIIEQPTMDEYRGREI 450
Query: 180 SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHD 233
S V A L++F R T +H G C++G VVD
Sbjct: 451 SPGPNVQSDA---------------ELDEFVRQHAETAYHPAGSCKMGSADDAMAVVDGA 495
Query: 234 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+V G++ LRVID S N A +M+ M ++
Sbjct: 496 GRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMADKV 535
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 124 STGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPI 183
S G ++L +R+PN +PS+ FNY +P D + GI +I+ + +++ ++
Sbjct: 394 SRGRVKLTSRDPNAHPSILFNYMADPLDWREFRDGIRITREIMRQPALDRYRGRELN--- 450
Query: 184 LVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGV 239
P L L+ F R T +H C++G VVD++ +V G+
Sbjct: 451 --------PGAEL----TTDEQLDTFVRMRAETAFHPSCSCKMGYDDMAVVDNEGRVHGM 498
Query: 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 273
+ALRV+D S N A +ML + RI
Sbjct: 499 EALRVVDASIMPRITTGNLNAPTIMLAEKIADRI 532
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,757,913
Number of Sequences: 539616
Number of extensions: 4855535
Number of successful extensions: 11167
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 10849
Number of HSP's gapped (non-prelim): 219
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)