Query 023276
Match_columns 284
No_of_seqs 199 out of 1642
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238 Glucose dehydrogenase/ 100.0 1E-58 2.2E-63 448.2 18.4 259 1-283 332-622 (623)
2 PLN02785 Protein HOTHEAD 100.0 1.7E-53 3.7E-58 421.1 19.6 281 2-283 305-586 (587)
3 TIGR01810 betA choline dehydro 100.0 8.6E-48 1.9E-52 377.9 16.2 249 2-276 270-529 (532)
4 PRK02106 choline dehydrogenase 100.0 2E-46 4.4E-51 370.2 17.0 250 2-277 277-535 (560)
5 COG2303 BetA Choline dehydroge 100.0 3.5E-39 7.5E-44 317.0 10.6 246 2-275 281-535 (542)
6 PF05199 GMC_oxred_C: GMC oxid 100.0 6.3E-39 1.4E-43 262.7 10.2 136 122-269 1-144 (144)
7 TIGR02462 pyranose_ox pyranose 99.8 3.3E-20 7.2E-25 181.7 12.6 129 117-276 407-542 (544)
8 TIGR02733 desat_CrtD C-3',4' d 77.9 30 0.00065 33.7 11.4 72 200-276 420-491 (492)
9 COG1252 Ndh NADH dehydrogenase 70.3 6 0.00013 38.1 4.3 50 229-278 281-332 (405)
10 PTZ00318 NADH dehydrogenase-li 69.1 9.8 0.00021 36.5 5.5 49 229-277 298-347 (424)
11 TIGR03169 Nterm_to_SelD pyridi 68.7 9.7 0.00021 35.4 5.3 49 229-277 261-310 (364)
12 KOG2495 NADH-dehydrogenase (ub 62.1 10 0.00022 36.8 4.0 39 229-273 349-388 (491)
13 TIGR02734 crtI_fam phytoene de 58.3 46 0.00099 32.4 8.1 75 200-278 419-493 (502)
14 PRK07121 hypothetical protein; 48.6 35 0.00076 33.3 5.5 55 222-276 425-490 (492)
15 CHL00051 rps12 ribosomal prote 46.4 12 0.00026 29.8 1.4 23 5-27 58-80 (123)
16 PF13807 GNVR: G-rich domain o 42.8 30 0.00065 25.1 3.1 33 238-270 37-69 (82)
17 PF10865 DUF2703: Domain of un 39.8 96 0.0021 24.6 5.7 94 141-241 3-105 (120)
18 TIGR00981 rpsL_bact ribosomal 37.8 19 0.00042 28.6 1.4 24 5-28 58-81 (124)
19 PRK05163 rpsL 30S ribosomal pr 35.8 21 0.00046 28.4 1.3 24 5-28 58-81 (124)
20 PRK12845 3-ketosteroid-delta-1 35.5 77 0.0017 31.8 5.6 50 225-274 502-562 (564)
21 PRK08275 putative oxidoreducta 32.5 74 0.0016 31.7 5.0 53 217-274 347-401 (554)
22 PRK12843 putative FAD-binding 31.7 1.1E+02 0.0023 30.8 6.0 56 223-278 507-573 (578)
23 cd03368 Ribosomal_S12 S12-like 31.2 26 0.00057 27.2 1.2 22 6-27 57-78 (108)
24 PRK08274 tricarballylate dehyd 31.2 1.1E+02 0.0023 29.6 5.7 56 221-276 394-460 (466)
25 PRK12839 hypothetical protein; 30.7 99 0.0021 31.1 5.5 51 225-275 505-566 (572)
26 PRK12844 3-ketosteroid-delta-1 30.0 1E+02 0.0022 30.8 5.5 54 223-276 485-549 (557)
27 COG0048 RpsL Ribosomal protein 29.4 29 0.00063 27.7 1.1 24 6-29 65-88 (129)
28 PF10555 MraY_sig1: Phospho-N- 29.1 29 0.00062 16.6 0.7 10 221-230 2-11 (13)
29 PRK07057 sdhA succinate dehydr 28.1 1E+02 0.0022 31.1 5.2 54 223-276 358-425 (591)
30 PRK05675 sdhA succinate dehydr 26.3 1.3E+02 0.0029 30.1 5.5 51 225-275 338-403 (570)
31 PRK12835 3-ketosteroid-delta-1 25.3 1.7E+02 0.0038 29.4 6.2 55 223-277 505-570 (584)
32 PRK12837 3-ketosteroid-delta-1 25.2 1.5E+02 0.0031 29.3 5.5 50 225-274 449-509 (513)
33 cd00319 Ribosomal_S12_like Rib 25.1 44 0.00096 25.4 1.4 23 6-28 44-66 (95)
34 PRK08205 sdhA succinate dehydr 24.8 1.4E+02 0.003 30.0 5.4 52 224-275 354-416 (583)
35 PRK12842 putative succinate de 23.9 1.8E+02 0.0039 29.1 6.0 53 226-278 505-568 (574)
36 PRK06134 putative FAD-binding 22.6 1.6E+02 0.0034 29.7 5.2 51 225-275 508-569 (581)
37 PRK07843 3-ketosteroid-delta-1 22.6 1.6E+02 0.0036 29.3 5.4 55 222-276 491-556 (557)
38 PRK08958 sdhA succinate dehydr 21.0 1.7E+02 0.0038 29.4 5.2 52 224-275 355-421 (588)
39 PTZ00139 Succinate dehydrogena 20.5 1.9E+02 0.0041 29.4 5.4 53 224-276 377-444 (617)
40 PRK06481 fumarate reductase fl 20.1 2.4E+02 0.0052 27.7 5.9 56 221-276 437-502 (506)
41 PF00633 HHH: Helix-hairpin-he 20.0 32 0.0007 20.2 -0.1 12 10-21 12-23 (30)
No 1
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=1e-58 Score=448.19 Aligned_cols=259 Identities=40% Similarity=0.593 Sum_probs=201.5
Q ss_pred CccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCcccc
Q 023276 1 MLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG 80 (284)
Q Consensus 1 ~~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 80 (284)
.||+++||||++||||||+|||||+...++.....+.+....+........+|++.++|+++..+. ..++++.....
T Consensus 332 ~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~---e~~~f~~t~~~ 408 (623)
T KOG1238|consen 332 DHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGV---ETLGFINTVSS 408 (623)
T ss_pred HHHHhcCCCeeccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcc---eeeEEeccccc
Confidence 379999999999999999999999998776655556555555556667788999999998766431 11122221110
Q ss_pred ccccCCCCCCChHH------------------------HHHHHHhhhcCCCCCCCceeEEEEeecCCCceEEEeecCCCC
Q 023276 81 QLSKVPPKQRTPEA------------------------IAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPN 136 (284)
Q Consensus 81 ~~~~~p~~~~~p~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~ 136 (284)
. .+ ..+||+ .+..+.... ....++++..+++|+|||+|+|+|+||.
T Consensus 409 ~---~~--~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~i~~~~l~P~SrG~l~L~s~nP~ 478 (623)
T KOG1238|consen 409 N---LS--LDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGELT-----NSDSFVIFPKLLRPKSRGRLKLRSTNPR 478 (623)
T ss_pred c---Cc--CCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhhh-----cCceeEEeehhcCCCccceEEecCCCCC
Confidence 0 00 112221 111111111 1123567889999999999999999999
Q ss_pred CCCeeeeCCCCCcchHHHHHHHHHHHHHHHhcccccccccccc--chhhhhhcccCCCCcCCCCCCCChhHHHHhhccCc
Q 023276 137 DNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM--SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTV 214 (284)
Q Consensus 137 ~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~ 214 (284)
+.|+|++|||++|+|++.+++|+|.+.++.++++|+++..++. +.++|... ...+|++|+||+|..+
T Consensus 479 ~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~ 547 (623)
T KOG1238|consen 479 DNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTV 547 (623)
T ss_pred cCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987652 23444321 2578999999999999
Q ss_pred ccccccccccccC------ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhhcCC
Q 023276 215 MTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 283 (284)
Q Consensus 215 ~~~~H~~GTc~MG------~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~~~~ 283 (284)
.|.||++|||+|| +|||+++|||||+|||||||||||.+|++|||||+||||||+|+.|++++....++
T Consensus 548 ~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 548 VTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred ceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999 89999999999999999999999999999999999999999888776666555443
No 2
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.7e-53 Score=421.08 Aligned_cols=281 Identities=61% Similarity=0.990 Sum_probs=189.2
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCccccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 81 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
+|+++||||++|||+||+|||||+...+.+..+.+......+.......+.|.....|...... ......+.+......
T Consensus 305 ~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 383 (587)
T PLN02785 305 ELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPD-SIHCHHGIMSAEIGQ 383 (587)
T ss_pred HHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhhhhhhccccceecccccccCch-hhhhhcccccccccc
Confidence 7999999999999999999999999998888765432211111111111122111111000000 000011111111111
Q ss_pred cccCCCCCCChHHHHHHHHhhhcCCCCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHHHHHH
Q 023276 82 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIST 161 (284)
Q Consensus 82 ~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~~ 161 (284)
+...++....++.+..++......+...+..++++..+++|+|||+|+|+|+||.+.|.|++||+++|.|++.+++++|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~ 463 (587)
T PLN02785 384 LSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRT 463 (587)
T ss_pred ccccCcccccchhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHH
Confidence 22222222334432222211111111112223566788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccc-chhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccCceecCCCeEeccC
Q 023276 162 IEKIIESKSFSKFKYESM-SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVD 240 (284)
Q Consensus 162 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~ 240 (284)
+++++++++++.+...+. +.+.+.+..+..|-+..|....+|++|++|+|+.+.+.||++|||+||+|||+++|||||+
T Consensus 464 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~ 543 (587)
T PLN02785 464 IEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVS 543 (587)
T ss_pred HHHHHcChhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccC
Confidence 999999999887763221 1111111101111122333346788999999999999999999999999999999999999
Q ss_pred CeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhhcCC
Q 023276 241 ALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS 283 (284)
Q Consensus 241 ~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~~~~ 283 (284)
|||||||||||.+|++|||+|+||||||+|+.|+++++++.++
T Consensus 544 ~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~~~~ 586 (587)
T PLN02785 544 RLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRAAG 586 (587)
T ss_pred CeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999999876653
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=8.6e-48 Score=377.89 Aligned_cols=249 Identities=20% Similarity=0.304 Sum_probs=177.5
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccch-hHHh-hchhhHHhHHHhccCCCCCCCCCCCCcccccCccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-LIQV-VGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 79 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 79 (284)
+|+++||+|++||||||+|||||+.+.+.+..+.+.... .... ........|+..+.|+...... ...+++..
T Consensus 270 ~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~-- 344 (532)
T TIGR01810 270 HLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNHF---EGGGFVRS-- 344 (532)
T ss_pred HHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccccchhhhhHHHHHHHhcCCCCcccccc---ceeEEEec--
Confidence 689999999999999999999999998888876543211 0000 0111122465555554332110 00011111
Q ss_pred cccccCCCCCCChHHHHHHHH---hhhcCCCCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHH
Q 023276 80 GQLSKVPPKQRTPEAIAEAIE---NMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCV 156 (284)
Q Consensus 80 ~~~~~~p~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~ 156 (284)
......|++...+.. ..............+...+++|+|||+|+|+|+||.+.|.|+++|+++|.|++.|+
T Consensus 345 ------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~ 418 (532)
T TIGR01810 345 ------NDDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFR 418 (532)
T ss_pred ------CCCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHH
Confidence 000011211000000 00000000011123446789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC------cee
Q 023276 157 QGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVV 230 (284)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VV 230 (284)
++++++++++++++++.+...+. .|+ +...+|++|++|+|+...+.+|++|||||| +||
T Consensus 419 ~~~~~~~~i~~~~~~~~~~~~~~-----------~p~----~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VV 483 (532)
T TIGR01810 419 EAIRVTREILKQKALDPYRGGEI-----------SPG----PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVV 483 (532)
T ss_pred HHHHHHHHHHcCcchhhcccccc-----------CCC----CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCcc
Confidence 99999999999988877653221 133 345789999999999999999999999999 499
Q ss_pred cCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 231 DHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 231 D~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
|++||||||+|||||||||||++|++|||+|+||||||+|+.|+++
T Consensus 484 D~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 484 DPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred CCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999988754
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=2e-46 Score=370.25 Aligned_cols=250 Identities=20% Similarity=0.270 Sum_probs=177.6
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchh-H-HhhchhhHHhHHHhccCCCCCCCCCCCCcccccCccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL-I-QVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 79 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 79 (284)
+|+++||+|++|||+||+|||||+.+.+.+..+.+..... . ..........|+..++|++..... ...++....
T Consensus 277 ~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~- 352 (560)
T PRK02106 277 HLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNHF---EAGGFIRSR- 352 (560)
T ss_pred HHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCcccccc---ceeeEEecC-
Confidence 5899999999999999999999999988887765432210 0 001111123565556665332110 000111000
Q ss_pred cccccCCCCCCChHHHHHHHHh-h--hcCCCCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHH
Q 023276 80 GQLSKVPPKQRTPEAIAEAIEN-M--KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCV 156 (284)
Q Consensus 80 ~~~~~~p~~~~~p~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~ 156 (284)
.....|++...+... . ............+.+.+++|+|||+|+|+|+||++.|+|+++|+.++.|++.++
T Consensus 353 -------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~ 425 (560)
T PRK02106 353 -------AGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFR 425 (560)
T ss_pred -------CCCCCCCeEEEEeeccccccCCCCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHH
Confidence 000112110000000 0 000000011223445788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC----ceecC
Q 023276 157 QGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDH 232 (284)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG----~VVD~ 232 (284)
++++++++++++++++.+...+. .|+ ....+|+++++|+++...+.+|++|||||| +|||+
T Consensus 426 ~~~~~~~~i~~~~~~~~~~~~~~-----------~p~----~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~ 490 (560)
T PRK02106 426 DAIRLTREIMAQPALDPYRGREI-----------SPG----ADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDP 490 (560)
T ss_pred HHHHHHHHHHcChhhhhcccccc-----------CCC----cccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECC
Confidence 99999999999988877654321 233 234688999999999999999999999999 79999
Q ss_pred CCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 233 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 233 ~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
+|||||++|||||||||||+++++||++|+||||||+|+.|+++.
T Consensus 491 ~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 491 EGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred CCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999887653
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=317.03 Aligned_cols=246 Identities=24% Similarity=0.317 Sum_probs=179.2
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhh--HHhHHHhccCCCCCCCCCCCCcccccCccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ--FGSYIEAASGENFAGGSPSPRDYGMFSPKI 79 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 79 (284)
+|.++||+|+.++||||+|||||..+.+.+..+.+............. ...|+..+.|+..... ...+
T Consensus 281 ~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~----~~~g------ 350 (542)
T COG2303 281 HLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNH----FEGG------ 350 (542)
T ss_pred hhhhcCCeeeecCcchhHHHHhhhhhhhheeccCccccccccccccccccceeEEeecCCCccccc----cccc------
Confidence 578899999999999999999999988888776554111100001111 1234444555433211 1111
Q ss_pred cccccCCCCCCChHHHHHHHHhhhcCC--CCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHH
Q 023276 80 GQLSKVPPKQRTPEAIAEAIENMKALD--DPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 157 (284)
Q Consensus 80 ~~~~~~p~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~ 157 (284)
|..+.+....|+++.++ ....... ........+.....+|.|||+|++++.||...|.|+++|++++.|++.+++
T Consensus 351 --f~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~ 427 (542)
T COG2303 351 --FVRSGPAGEYPDGQYHF-APLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRA 427 (542)
T ss_pred --ccccCccccCCCccccc-ccccccccccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHH
Confidence 22222223344432111 1111000 011122345678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC----cee-cC
Q 023276 158 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVV-DH 232 (284)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG----~VV-D~ 232 (284)
+++..+++..++.+..+...+. .|+ +...+++++.+|++....+.+|++|||||| .|| |+
T Consensus 428 ~~~~~r~i~~~~~~~~~~~~e~-----------~~~----~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~ 492 (542)
T COG2303 428 GIRLTREIIGQPALDARRKAEL-----------APG----PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDP 492 (542)
T ss_pred HHHHHHHHhcCccchhhHHHhh-----------cCC----CccccHHHHHHHHHhccCccccccccccCCCCchhhcccc
Confidence 9999999999877776654331 233 356788899999999999999999999999 355 59
Q ss_pred CCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 023276 233 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 233 ~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
+|||||++||||||||+||+++++||++|++|||||+|+.|++
T Consensus 493 ~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~ 535 (542)
T COG2303 493 YLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILG 535 (542)
T ss_pred ccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998887
No 6
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=6.3e-39 Score=262.67 Aligned_cols=136 Identities=35% Similarity=0.603 Sum_probs=111.5
Q ss_pred CCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCc--CC-CC
Q 023276 122 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVN--LL-PR 198 (284)
Q Consensus 122 p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~-p~ 198 (284)
|+|||+|+|+++||++.|.|+++|+.++.|++.++++++.+++++++. ++++...+.. |+. .. ..
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-----------~~~~~~~~~~ 68 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL-----------PGPSPFCPDA 68 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE-----------SCGCSCCGCS
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc-----------cccccccccc
Confidence 899999999999999999999999999999999999999999999998 7766532210 110 00 02
Q ss_pred CCCChhHHHHhhccCcccccccccccccC-----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHH
Q 023276 199 HSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 269 (284)
Q Consensus 199 ~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~ 269 (284)
...++++|++|+++...+.+|++|||||| +|||++|||||++||||+||||||+.+++||++|+||+||||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 69 SLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp TTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred ccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 34678899999999999999999999999 999999999999999999999999999999999999999995
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.83 E-value=3.3e-20 Score=181.73 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=107.2
Q ss_pred EEeecCCCceEEEeec--CCCCCCCeeeeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCc
Q 023276 117 EKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVN 194 (284)
Q Consensus 117 ~~~~~p~SrG~V~L~s--~dp~~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 194 (284)
..-..|...++|+|++ +|.++.|++..+|-.++.|++.+.++.+.+.+++...+... +.
T Consensus 407 ~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~------------------~~- 467 (544)
T TIGR02462 407 FGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYL------------------PG- 467 (544)
T ss_pred EeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCc------------------cc-
Confidence 4456699999999976 59999999999999999999999999999999876543210 10
Q ss_pred CCCCCCCChhHHHHhhccCcccccccccccccC-----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHH
Q 023276 195 LLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 269 (284)
Q Consensus 195 ~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~ 269 (284)
.. . .|. ....++|++|||||| +|||+++||||++||||+|+|+||+.+++||++|+||+|+|+
T Consensus 468 ----~~---~---~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~ 535 (544)
T TIGR02462 468 ----SL---P---QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKS 535 (544)
T ss_pred ----cc---c---ccc--CCCccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHH
Confidence 00 0 011 123578999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 023276 270 GVRILSE 276 (284)
Q Consensus 270 A~~i~~~ 276 (284)
|+.|+++
T Consensus 536 a~~i~~~ 542 (544)
T TIGR02462 536 AEYIINN 542 (544)
T ss_pred HHHHHHh
Confidence 9998865
No 8
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=77.93 E-value=30 Score=33.70 Aligned_cols=72 Identities=11% Similarity=-0.043 Sum_probs=42.9
Q ss_pred CCChhHHHHhhccCcccccccccccccCceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 200 SNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 200 ~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
..|..+++.|....-++.+|..=+......-....+ ..++||+.|.+|++|-. =...+++=|..+|+.|+++
T Consensus 420 v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~-t~i~gLyl~G~~~~pG~----Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 420 LATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSR-TPVKGLWLCGDSIHPGE----GTAGVSYSALMVVRQILAS 491 (492)
T ss_pred ccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCC-CCCCCeEEecCccCCCC----cHHHHHHHHHHHHHHHhhc
Confidence 456678888876555566665433322111112223 48999999999999831 1233555677777777653
No 9
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=70.29 E-value=6 Score=38.06 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=35.2
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCC-CCCccHHHHHHHHHHHHHHHHHhhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYS-PGTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~-~~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
+||+.|++.|.++++++ |++-++.. |.--+.-..+..|+.+|..|.+...
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred EeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999 99988875 1111223345567776766655543
No 10
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=69.08 E-value=9.8 Score=36.48 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=36.3
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
.||+.+|+.+.+|++++ |++-++..+...+....+.-|+.+|+.|.+..
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999 98887654333334445667888887776654
No 11
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=68.65 E-value=9.7 Score=35.37 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=36.5
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
.||+.+|..+.+|++++ |++.++..+...+....+..|+.+|+.|.+..
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 68999999999999999 88887755544444445667777777776544
No 12
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=62.14 E-value=10 Score=36.79 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=28.0
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHH
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRI 273 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i 273 (284)
.||+.|||.|++|++-+ |++-.|..+. +..+|++=++.+
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~~------tAQVA~QqG~yL 388 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLKP------TAQVAEQQGAYL 388 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCcc------HHHHHHHHHHHH
Confidence 89999999999999988 9985555443 344555544433
No 13
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=58.26 E-value=46 Score=32.44 Aligned_cols=75 Identities=7% Similarity=-0.009 Sum_probs=42.9
Q ss_pred CCChhHHHHhhccCcccccccccccccCceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Q 023276 200 SNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 200 ~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
..|..+++.|....-++.+|..-|...-.-.-+..+-..++||+.+.+|++|-.. ...+++=|..+|+.|+++..
T Consensus 419 ~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~G----v~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 419 TFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAG----VPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred EcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCC----HHHHHHHHHHHHHHHHhhcc
Confidence 3566778887644444555544333211111111234579999999999988321 23344566777777776543
No 14
>PRK07121 hypothetical protein; Validated
Probab=48.57 E-value=35 Score=33.33 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=41.7
Q ss_pred cccccCc-eecCC-CeEec-----cCCeEEee---ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 222 GGCQVGK-VVDHD-YKVLG-----VDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 222 GTc~MG~-VVD~~-lrV~G-----v~~LrVvD---aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
-.+.||+ ++|.+ +||.. +.|||.+. ++++= .-+++|..+..+..|..|++.+.++
T Consensus 425 ~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 425 PGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ceeeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4456776 68999 99997 89999996 34542 2346888999999999988877543
No 15
>CHL00051 rps12 ribosomal protein S12
Probab=46.43 E-value=12 Score=29.76 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=19.8
Q ss_pred cCCCcceecCcccCcccccCCCC
Q 023276 5 AHNITVVLDQPLVGQGMSDNPMN 27 (284)
Q Consensus 5 ~~gIpVv~DlPgVG~NLqDH~~~ 27 (284)
+-|-.|.+-.||-|-|||+|-.+
T Consensus 58 sngk~v~AyIPGeGhnlqehs~V 80 (123)
T CHL00051 58 TSGFEITAYIPGIGHNLQEHSVV 80 (123)
T ss_pred cCCCEEEEEcCCCCccccccCEE
Confidence 56778899999999999999754
No 16
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=42.82 E-value=30 Score=25.10 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=26.7
Q ss_pred ccCCeEEeeccCCCCCCCCccHHHHHHHHHHHH
Q 023276 238 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMG 270 (284)
Q Consensus 238 Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A 270 (284)
.+.+.||+|..+.|..|....-.-++++|-=++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 456889999999999998888888887776433
No 17
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=39.77 E-value=96 Score=24.62 Aligned_cols=94 Identities=7% Similarity=0.057 Sum_probs=50.4
Q ss_pred eeeCCCCCc--------chHHHHHHHHHHHHHHHhccccccccccc-cchhhhhhcccCCCCcCCCCCCCChhHHHHhhc
Q 023276 141 VTFNYFKEP--------EDLQRCVQGISTIEKIIESKSFSKFKYES-MSVPILVNMTASAPVNLLPRHSNASTSLEQFCR 211 (284)
Q Consensus 141 i~~~yl~~~--------~D~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~ 211 (284)
|++.|+... .--+.+.++++.++++++..++.-.+.+. ++..++....+..|. -....-.+++|+-
T Consensus 3 I~w~~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~-----I~inG~piE~~l~ 77 (120)
T PF10865_consen 3 IEWQHLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPT-----IRINGRPIEDLLG 77 (120)
T ss_pred EEEEEeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCe-----eeECCEehhHhhC
Confidence 556666544 34568899999999999887766443211 221111110000010 0123346777773
Q ss_pred cCcccccccccccccCceecCCCeEeccCC
Q 023276 212 DTVMTIWHYHGGCQVGKVVDHDYKVLGVDA 241 (284)
Q Consensus 212 ~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~~ 241 (284)
. ....-+|++|.=...=|.++|++.++|
T Consensus 78 ~--~v~~s~C~~c~~~~g~~~~CRt~~~~g 105 (120)
T PF10865_consen 78 A--EVGESPCESCGCSCGGDVDCRTLEYEG 105 (120)
T ss_pred C--ccccCcccccccccCCCccceeEEECC
Confidence 2 233345555554444677888887776
No 18
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=37.84 E-value=19 Score=28.63 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=19.7
Q ss_pred cCCCcceecCcccCcccccCCCCc
Q 023276 5 AHNITVVLDQPLVGQGMSDNPMNA 28 (284)
Q Consensus 5 ~~gIpVv~DlPgVG~NLqDH~~~~ 28 (284)
+-|-.|.+=.||-|-|||+|-.+.
T Consensus 58 ~ngk~v~AyIPG~Ghnlqehs~VL 81 (124)
T TIGR00981 58 TNGFEVTAYIPGEGHNLQEHSVVL 81 (124)
T ss_pred CCCCEEEEEcCCCCCCccccCEEE
Confidence 456778888999999999997543
No 19
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=35.83 E-value=21 Score=28.43 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=19.5
Q ss_pred cCCCcceecCcccCcccccCCCCc
Q 023276 5 AHNITVVLDQPLVGQGMSDNPMNA 28 (284)
Q Consensus 5 ~~gIpVv~DlPgVG~NLqDH~~~~ 28 (284)
+-|-.|.+=.||-|-|||+|-.+.
T Consensus 58 ~ngk~v~AyIPGeGhnlqehs~VL 81 (124)
T PRK05163 58 TNGFEVTAYIPGEGHNLQEHSVVL 81 (124)
T ss_pred CCCCEEEEEcCCCCCCccccCEEE
Confidence 456678888999999999997543
No 20
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.46 E-value=77 Score=31.82 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=36.7
Q ss_pred ccCc-eecCCCeEec-----cCCeEEee---ccCCC-CCCC-CccHHHHHHHHHHHHHHHH
Q 023276 225 QVGK-VVDHDYKVLG-----VDALRVID---GSTFY-YSPG-TNPQATVMMLGRYMGVRIL 274 (284)
Q Consensus 225 ~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P-~~~~-~n~~~t~~aiaer~A~~i~ 274 (284)
.+|+ .+|.++||.. +.|||.+. ++++- .-++ +++....+..|..|++.+.
T Consensus 502 T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 502 TCGGLRADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred ecCCeeECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 3454 5788888875 78899995 45653 3343 8889999999999888764
No 21
>PRK08275 putative oxidoreductase; Provisional
Probab=32.53 E-value=74 Score=31.71 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=36.3
Q ss_pred ccccccccccCc-eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHH
Q 023276 217 IWHYHGGCQVGK-VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRIL 274 (284)
Q Consensus 217 ~~H~~GTc~MG~-VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~ 274 (284)
..|.+|.-.||+ .||.+++- .++||+.+ |++..+ .|-.+..+.-|.++++.+.
T Consensus 347 ~~~~~g~~~~Ggi~~d~~~~t-~i~gl~a~Ge~~~~~----~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 347 EIGFCSGHSASGVWVNEKAET-TVPGLYAAGDMASVP----HNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CceeecccccCcEEECCCCcc-CCCCEEECcccCCch----hHHHHHHHHHHHHHHHHHH
Confidence 456677778887 58999984 79999998 544222 4555556666777666553
No 22
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=31.66 E-value=1.1e+02 Score=30.82 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=38.3
Q ss_pred ccccCc-eecCCCeEec-----cCCeEEee---ccCCCC-C-CCCccHHHHHHHHHHHHHHHHHhhh
Q 023276 223 GCQVGK-VVDHDYKVLG-----VDALRVID---GSTFYY-S-PGTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 223 Tc~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P~-~-~~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
.+.||+ .+|.++||.. +.|||.+. ++++-. - ..+++....+..|..|++.+.+...
T Consensus 507 ~~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 507 IGAATGLVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred cccCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 344554 5788888886 88999884 344431 1 2367778888889988887766544
No 23
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=31.15 E-value=26 Score=27.22 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.8
Q ss_pred CCCcceecCcccCcccccCCCC
Q 023276 6 HNITVVLDQPLVGQGMSDNPMN 27 (284)
Q Consensus 6 ~gIpVv~DlPgVG~NLqDH~~~ 27 (284)
-|=.|.+=.||-|-|||+|-.+
T Consensus 57 ngk~v~AyIPG~Ghnlqehs~V 78 (108)
T cd03368 57 NGKEVTAYIPGEGHNLQEHSVV 78 (108)
T ss_pred CCCEEEEEcCCCCCCccccCEE
Confidence 3556778899999999999754
No 24
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=31.15 E-value=1.1e+02 Score=29.61 Aligned_cols=56 Identities=16% Similarity=-0.002 Sum_probs=38.6
Q ss_pred ccccccCc-eecCCCeEec-----cCCeEEee---cc-CCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 221 HGGCQVGK-VVDHDYKVLG-----VDALRVID---GS-TFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 221 ~GTc~MG~-VVD~~lrV~G-----v~~LrVvD---aS-v~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
.-.+.||+ .+|.++||.. +.|||.+. ++ ++- .-+++|..+-.+..|..+++.+.+.
T Consensus 394 ~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 394 GITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred ceeeecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 34456776 5899999964 89999995 33 553 3345677777777888877776554
No 25
>PRK12839 hypothetical protein; Provisional
Probab=30.71 E-value=99 Score=31.10 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=37.3
Q ss_pred ccCc-eecCCCeEec-----cCCeEEee---ccCCCC-C-CCCccHHHHHHHHHHHHHHHHH
Q 023276 225 QVGK-VVDHDYKVLG-----VDALRVID---GSTFYY-S-PGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 225 ~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P~-~-~~~n~~~t~~aiaer~A~~i~~ 275 (284)
.||+ .+|.++||.. +.|||.+. +|++-. - .+++.....+..|..|++.+.+
T Consensus 505 T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 505 TFAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred cCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 4554 5788888876 78899995 455531 1 3588889999999998887754
No 26
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.01 E-value=1e+02 Score=30.79 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=38.5
Q ss_pred ccccCc-eecCCCeEec-----cCCeEEee---ccCCC-CCCC-CccHHHHHHHHHHHHHHHHHh
Q 023276 223 GCQVGK-VVDHDYKVLG-----VDALRVID---GSTFY-YSPG-TNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 223 Tc~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P-~~~~-~n~~~t~~aiaer~A~~i~~~ 276 (284)
.+.+|+ .+|.++||.. +.|||.+. ++++- .-+. ++.....+..|..|++.+.+.
T Consensus 485 ~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 485 VGTSGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred cEECCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 334555 5788888887 88999995 34553 2233 788889999999988877654
No 27
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=29.39 E-value=29 Score=27.69 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred CCCcceecCcccCcccccCCCCcE
Q 023276 6 HNITVVLDQPLVGQGMSDNPMNAI 29 (284)
Q Consensus 6 ~gIpVv~DlPgVG~NLqDH~~~~~ 29 (284)
-|+.|..=.||-|.|||+|-.+.+
T Consensus 65 NG~~VtAyiPg~Gh~lqEH~~Vli 88 (129)
T COG0048 65 NGKEVTAYIPGEGHNLQEHSEVLI 88 (129)
T ss_pred CCcEEEEEcCCCCccccccCEEEE
Confidence 688999999999999999976433
No 28
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=29.11 E-value=29 Score=16.59 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=6.8
Q ss_pred ccccccCcee
Q 023276 221 HGGCQVGKVV 230 (284)
Q Consensus 221 ~GTc~MG~VV 230 (284)
.||=.||+++
T Consensus 2 ~gTPTMGGi~ 11 (13)
T PF10555_consen 2 SGTPTMGGIV 11 (13)
T ss_pred CCCccceeEE
Confidence 4677788764
No 29
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.12 E-value=1e+02 Score=31.06 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=38.2
Q ss_pred ccccCce-ecCCCeEe--------ccCCeEEeec-cC-CC---CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 223 GCQVGKV-VDHDYKVL--------GVDALRVIDG-ST-FY---YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 223 Tc~MG~V-VD~~lrV~--------Gv~~LrVvDa-Sv-~P---~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
...||+| ||.++||. .++|||.+.- +. -. .-.++|..+-.+..|.+|++.+.+.
T Consensus 358 h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 358 HYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred heeCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3457886 89999996 4899999843 21 11 1234678888889999988877653
No 30
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.31 E-value=1.3e+02 Score=30.15 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=36.7
Q ss_pred ccCce-ecCCCeEe---------ccCCeEEe-eccC--CC--CCCCCccHHHHHHHHHHHHHHHHH
Q 023276 225 QVGKV-VDHDYKVL---------GVDALRVI-DGST--FY--YSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 225 ~MG~V-VD~~lrV~---------Gv~~LrVv-DaSv--~P--~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
.||++ +|.+++|. .|.||+-+ +++. +- .-.++|..+-.+..|.++++.+.+
T Consensus 338 t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 338 MMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred cCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 46775 89999983 49999998 3332 11 123578889999999998877654
No 31
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.28 E-value=1.7e+02 Score=29.42 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=36.8
Q ss_pred ccccCc-eecCCCeEec-----cCCeEEee---ccCCCC-CC-CCccHHHHHHHHHHHHHHHHHhh
Q 023276 223 GCQVGK-VVDHDYKVLG-----VDALRVID---GSTFYY-SP-GTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 223 Tc~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P~-~~-~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
.+.||+ ++|.++||.. +.|||.+. ++++-. -+ .++.....+..|..|++.+.+..
T Consensus 505 ~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 505 LGTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred cccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 344564 5677777776 57899985 455532 22 36777888888888888776543
No 32
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=25.20 E-value=1.5e+02 Score=29.32 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=35.4
Q ss_pred ccCc-eecCCCeEec-----cCCeEEee---ccCC-CCCC-CCccHHHHHHHHHHHHHHHH
Q 023276 225 QVGK-VVDHDYKVLG-----VDALRVID---GSTF-YYSP-GTNPQATVMMLGRYMGVRIL 274 (284)
Q Consensus 225 ~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~-P~~~-~~n~~~t~~aiaer~A~~i~ 274 (284)
.||+ .+|.++||.. +.|||.+- ++++ ..-+ ++|.....+..|..|+..+.
T Consensus 449 T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa 509 (513)
T PRK12837 449 TKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMA 509 (513)
T ss_pred eCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHh
Confidence 4554 4677777776 78899984 3455 2333 48889999999999888764
No 33
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins. S12 and S23 are located at the interface of the large and small ribosomal subunits, adjacent to the decoding center. They play an important role in translocation during the peptide elongation step of protein synthesis. They are also involved in important RNA and protein interactions. Ribosomal protein S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. S23 interacts with domain III of the eukaryotic elongation factor 2 (eEF2), which catalyzes translocation. Mutations in S12 and S23 have been found to affect translational accuracy. Antibiotics such as streptomycin may also bind S12/S23 and cause the ribosome to misread the genetic code.
Probab=25.07 E-value=44 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=18.4
Q ss_pred CCCcceecCcccCcccccCCCCc
Q 023276 6 HNITVVLDQPLVGQGMSDNPMNA 28 (284)
Q Consensus 6 ~gIpVv~DlPgVG~NLqDH~~~~ 28 (284)
-|=.|.+=.||-|.|||+|-.+.
T Consensus 44 ngk~v~ayIPg~Gh~lqeh~~VL 66 (95)
T cd00319 44 SGYEVTAYIPGEGHNLQEHSVVL 66 (95)
T ss_pred CCCEEEEECCCCCcccccccEEE
Confidence 45567788999999999997543
No 34
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.75 E-value=1.4e+02 Score=30.05 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=36.2
Q ss_pred cccCce-ecCCCeE-----eccCCeEEe-eccC--CC--CCCCCccHHHHHHHHHHHHHHHHH
Q 023276 224 CQVGKV-VDHDYKV-----LGVDALRVI-DGST--FY--YSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 224 c~MG~V-VD~~lrV-----~Gv~~LrVv-DaSv--~P--~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
..||+| +|.+++| -.|+||+.+ +++. +- .-.++|..+-.+..|.+|++.+.+
T Consensus 354 ~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 354 YAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred EECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 368886 8999998 479999999 3321 11 123467788888888888776654
No 35
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=23.92 E-value=1.8e+02 Score=29.13 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=37.0
Q ss_pred cCc-eecCCCeEec-----cCCeEEee---ccCCCC-CC-CCccHHHHHHHHHHHHHHHHHhhh
Q 023276 226 VGK-VVDHDYKVLG-----VDALRVID---GSTFYY-SP-GTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 226 MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P~-~~-~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
+|+ .+|.++||.. +.|||.+. ++++-. -+ .+++....+..|..|++.+.++..
T Consensus 505 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 505 FDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCCcCCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 444 4677777765 68899986 345431 12 388889999999999988876543
No 36
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=22.60 E-value=1.6e+02 Score=29.68 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=35.5
Q ss_pred ccCc-eecCCCeEec-----cCCeEEee---ccCCC-CC-CCCccHHHHHHHHHHHHHHHHH
Q 023276 225 QVGK-VVDHDYKVLG-----VDALRVID---GSTFY-YS-PGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 225 ~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P-~~-~~~n~~~t~~aiaer~A~~i~~ 275 (284)
.||+ .+|.++||.. +.|||.+. ++++= .- .+++.....+..|..|++.+.+
T Consensus 508 T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 508 TFAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred cCCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 4555 5677777776 78899996 34442 11 2577888888889988887754
No 37
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.57 E-value=1.6e+02 Score=29.34 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=37.2
Q ss_pred cccccCc-eecCCCeEec-----cCCeEEee---ccCCC-CCCC-CccHHHHHHHHHHHHHHHHHh
Q 023276 222 GGCQVGK-VVDHDYKVLG-----VDALRVID---GSTFY-YSPG-TNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 222 GTc~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P-~~~~-~n~~~t~~aiaer~A~~i~~~ 276 (284)
-.+.+|+ .+|.++||.. +.|||.+. ++++- .-++ ++.....+..|..|++.+.++
T Consensus 491 ~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 491 DLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred cceeCCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 3445664 5777777776 88999983 24442 2233 777788888999988877653
No 38
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.05 E-value=1.7e+02 Score=29.44 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=36.6
Q ss_pred cccCce-ecCCCeEe---------ccCCeEEeec-cC-CC---CCCCCccHHHHHHHHHHHHHHHHH
Q 023276 224 CQVGKV-VDHDYKVL---------GVDALRVIDG-ST-FY---YSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 224 c~MG~V-VD~~lrV~---------Gv~~LrVvDa-Sv-~P---~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
..||+| ||.+++|. -|+||+.+.- +. -. .-.++|..+-.+..|.+|++.+.+
T Consensus 355 ~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 421 (588)
T PRK08958 355 YMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred EeCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 357876 89999984 4999999832 21 11 123567788888889888877654
No 39
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=20.45 E-value=1.9e+02 Score=29.40 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=37.7
Q ss_pred cccCce-ecCCCeEe---------ccCCeEEe-ecc---CCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 224 CQVGKV-VDHDYKVL---------GVDALRVI-DGS---TFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 224 c~MG~V-VD~~lrV~---------Gv~~LrVv-DaS---v~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
..||++ ||.++||. .|+||+.+ +++ +.= .-.++|..+..+..|.+|++.+.+.
T Consensus 377 ~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 377 YNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred eecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 357775 89999984 49999999 332 211 2234688888889999988877653
No 40
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=20.08 E-value=2.4e+02 Score=27.73 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=39.6
Q ss_pred ccccccCc-eecCCCeEec-----cCCeEEee---ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 221 HGGCQVGK-VVDHDYKVLG-----VDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 221 ~GTc~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
.-.+.||+ .+|.++||.. +.|||.+. ++++- .-.++|..+..+..|..+++.+.+.
T Consensus 437 ~~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 437 GIHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred ceeecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 33455776 4799999854 88999983 34442 3445888888888899888877654
No 41
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=20.00 E-value=32 Score=20.22 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=7.4
Q ss_pred ceecCcccCccc
Q 023276 10 VVLDQPLVGQGM 21 (284)
Q Consensus 10 Vv~DlPgVG~NL 21 (284)
=...+||||+-.
T Consensus 12 eL~~lpGIG~~t 23 (30)
T PF00633_consen 12 ELMKLPGIGPKT 23 (30)
T ss_dssp HHHTSTT-SHHH
T ss_pred HHHhCCCcCHHH
Confidence 346789999743
Done!