Query 023276
Match_columns 284
No_of_seqs 199 out of 1642
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fim_B ARYL-alcohol oxidase; A 100.0 4.4E-55 1.5E-59 430.6 14.0 257 2-276 291-565 (566)
2 3q9t_A Choline dehydrogenase a 100.0 7.5E-54 2.6E-58 422.7 13.4 255 2-276 285-572 (577)
3 3qvp_A Glucose oxidase; oxidor 100.0 2.1E-50 7.2E-55 398.3 15.7 152 115-279 423-580 (583)
4 1ju2_A HydroxynitrIle lyase; f 100.0 3E-50 1E-54 394.2 14.3 244 2-281 276-521 (536)
5 1gpe_A Protein (glucose oxidas 100.0 2.2E-48 7.5E-53 384.8 7.7 258 2-278 312-584 (587)
6 2jbv_A Choline oxidase; alcoho 100.0 3.9E-47 1.3E-51 372.9 12.7 235 2-277 288-530 (546)
7 3t37_A Probable dehydrogenase; 100.0 5.7E-45 1.9E-49 353.9 14.2 146 113-274 372-521 (526)
8 1kdg_A CDH, cellobiose dehydro 100.0 7E-43 2.4E-47 342.0 9.5 240 2-276 276-542 (546)
9 1n4w_A CHOD, cholesterol oxida 100.0 6.8E-35 2.3E-39 283.3 13.9 132 114-278 369-501 (504)
10 1coy_A Cholesterol oxidase; ox 100.0 1.4E-31 4.9E-36 260.1 12.0 133 114-279 374-507 (507)
11 3pl8_A Pyranose 2-oxidase; sub 100.0 4.4E-31 1.5E-35 262.6 15.3 136 115-281 472-617 (623)
12 4dgk_A Phytoene dehydrogenase; 72.0 2.3 7.9E-05 39.6 3.3 45 233-281 451-495 (501)
13 4g6h_A Rotenone-insensitive NA 62.4 7.3 0.00025 36.9 4.7 44 229-275 354-398 (502)
14 3hyw_A Sulfide-quinone reducta 56.9 14 0.00049 33.8 5.5 51 229-279 276-334 (430)
15 3f8d_A Thioredoxin reductase ( 52.5 21 0.00072 30.3 5.6 49 229-280 270-319 (323)
16 2vqe_L 30S ribosomal protein S 43.7 8.6 0.0003 29.9 1.4 24 5-28 61-84 (135)
17 3h28_A Sulfide-quinone reducta 35.3 53 0.0018 29.7 5.7 50 229-278 276-333 (430)
18 1y0p_A Fumarate reductase flav 33.3 42 0.0014 31.9 4.8 53 224-276 505-567 (571)
19 3sx6_A Sulfide-quinone reducta 32.8 64 0.0022 29.3 5.8 50 229-278 287-344 (437)
20 3h8l_A NADH oxidase; membrane 30.8 62 0.0021 28.9 5.3 47 228-277 288-335 (409)
21 2bs2_A Quinol-fumarate reducta 27.5 55 0.0019 32.0 4.6 51 224-275 370-426 (660)
22 1fl2_A Alkyl hydroperoxide red 26.8 95 0.0033 26.1 5.6 46 228-278 259-305 (310)
23 4at0_A 3-ketosteroid-delta4-5a 26.3 47 0.0016 31.0 3.7 52 224-275 447-508 (510)
24 1qo8_A Flavocytochrome C3 fuma 25.8 66 0.0023 30.4 4.7 54 223-276 499-562 (566)
25 3vrd_B FCCB subunit, flavocyto 25.7 68 0.0023 28.4 4.6 48 229-279 275-325 (401)
26 1d4d_A Flavocytochrome C fumar 23.9 72 0.0024 30.4 4.6 54 223-276 504-568 (572)
27 2ywl_A Thioredoxin reductase r 22.9 1.3E+02 0.0046 22.9 5.4 44 229-277 126-170 (180)
28 1kf6_A Fumarate reductase flav 22.7 68 0.0023 30.9 4.2 53 222-275 355-413 (602)
29 3r9u_A Thioredoxin reductase; 22.0 1.3E+02 0.0044 25.1 5.4 45 228-277 266-311 (315)
30 2h88_A Succinate dehydrogenase 21.7 1.2E+02 0.004 29.4 5.6 53 224-276 365-431 (621)
No 1
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=100.00 E-value=4.4e-55 Score=430.60 Aligned_cols=257 Identities=19% Similarity=0.294 Sum_probs=189.7
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccch-h--HHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCcc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-L--IQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPK 78 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 78 (284)
+|+++||||++||||||+|||||+.+.+.|.++.+.+.. . ..........+|+..++|+++.... ...+++...
T Consensus 291 ~L~~~gI~vv~dlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~---~~~~f~~~~ 367 (566)
T 3fim_B 291 DLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA---NHLAWLRLP 367 (566)
T ss_dssp HHHHTTCCCSEECTTTTCSBBCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSC---SEEEEECCC
T ss_pred HHhhcCCCceecCcchhhhhhcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChh---hheeeeccc
Confidence 799999999999999999999999988888876554321 0 0111123345788999998765431 111222111
Q ss_pred c--cccccC---CCCCCChHHHHHHHHhhh---cCC-CCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCc
Q 023276 79 I--GQLSKV---PPKQRTPEAIAEAIENMK---ALD-DPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 149 (284)
Q Consensus 79 ~--~~~~~~---p~~~~~p~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~ 149 (284)
. ..+... ......|+++ .++.+.. ... .......++..++++|+|||+|+|+|+||++.|+|++|||++|
T Consensus 368 ~~~~~~~~~~~~~~~~~~pd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~ 446 (566)
T 3fim_B 368 SNSSIFQTFPDPAAGPNSAHWE-TIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTE 446 (566)
T ss_dssp TTCGGGGTSCCCSSSTTSCSEE-EEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSH
T ss_pred cchhhhhhhccccccCCCCCEE-EEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCc
Confidence 0 000000 0111233321 1111000 000 0111234566889999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC--
Q 023276 150 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-- 227 (284)
Q Consensus 150 ~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-- 227 (284)
.|++.|++++|++++++++++++++...+. .|+. ....+|++|++|+|+...+.||++||||||
T Consensus 447 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~P~~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~ 512 (566)
T 3fim_B 447 FDIFTMIQAVKSNLRFLSGQAWADFVIRPF-----------DPRL---RDPTDDAAIESYIRDNANTIFHPVGTASMSPR 512 (566)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGTTTEEEES-----------SGGG---SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCT
T ss_pred cHHHHHHHHHHHHHHHHhCcccCCcccccc-----------CCCc---ccccchHHHHHHHhhcccccccccCccccCCc
Confidence 999999999999999999999998875432 1220 245789999999999999999999999998
Q ss_pred ----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 228 ----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 228 ----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
+|||++||||||+|||||||||||+++++|||+|+||||||+|+.|+++
T Consensus 513 ~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 513 GASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp TCSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999999888654
No 2
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=100.00 E-value=7.5e-54 Score=422.71 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=186.7
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhH----HhhchhhHHhHHHhccCCCCCCCCCCCCcccccCc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLI----QVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSP 77 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 77 (284)
+|+++||||++||||||+|||||+.+.+.|+++.+.+.... .........+|+..++|+++.... ...++...
T Consensus 285 ~L~~~GI~vv~dlP~VG~nl~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~---~~~~~~~~ 361 (577)
T 3q9t_A 285 ELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLL---ELVGFPRI 361 (577)
T ss_dssp HHHTTTCCCSEECTTTTEEEBCCEEEEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSE---EEEEECCC
T ss_pred HHHHcCCCeeccCchhhhhhhcCcceeEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccchh---heeEEeec
Confidence 69999999999999999999999998888888755432110 011223455788889998654210 00111110
Q ss_pred cc--c---cc----------c-cCCCCCCChHHHHHHHH----hhh-cCC-CCCCCceeEEEEeecCCCce-EEEeecCC
Q 023276 78 KI--G---QL----------S-KVPPKQRTPEAIAEAIE----NMK-ALD-DPAFRGGFILEKVMGPVSTG-HLELRTRN 134 (284)
Q Consensus 78 ~~--~---~~----------~-~~p~~~~~p~~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~p~SrG-~V~L~s~d 134 (284)
.. . .+ . ..+. ..|+++..+.. ... ... .....+.++.+++++|+||| +|+|+|+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~d 439 (577)
T 3q9t_A 362 DKYLEKDAEYRKAKAANGGKDPFSPL--GQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSAD 439 (577)
T ss_dssp HHHHTTCHHHHHHHHHTTTSCSSCTT--SCCSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSC
T ss_pred ChhhhcchhhhhhhhccccccccCCC--CCceEEEEecccccccccccccCCCCCCEEEEEEEeeeccccCCEEEeCCCC
Confidence 00 0 00 0 0011 01211000000 000 000 01112345668899999999 99999999
Q ss_pred CCCCCeeeeCCCCCcchHHHHHHHHHHHHHHH-hccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccC
Q 023276 135 PNDNPSVTFNYFKEPEDLQRCVQGISTIEKII-ESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDT 213 (284)
Q Consensus 135 p~~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~ 213 (284)
|.+.|+|++|||++|.|++.|++++|++++++ ++++++++...+. .|+ ....+|++|++|+|+.
T Consensus 440 p~~~P~i~p~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~e~-----------~p~----~~~~sd~~~~~~ir~~ 504 (577)
T 3q9t_A 440 PFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEY-----------PWE----MPLDSDKEMHRAVLDR 504 (577)
T ss_dssp TTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHHHSTTGGGTEEEEE-----------SSC----CCTTCHHHHHHHHHHH
T ss_pred CCCCceEecCcCCCccHHHHHHHHHHHHHHHHHhChhhhhcccccc-----------CCC----CCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999 8999998875442 133 3467999999999999
Q ss_pred cccccccccccccC-----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 214 VMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 214 ~~~~~H~~GTc~MG-----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
..+.||++|||||| +|||++||||||+|||||||||||+++++|||+|+||||||+|+.|+++
T Consensus 505 ~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~ 572 (577)
T 3q9t_A 505 CQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572 (577)
T ss_dssp CEECSCCBCTTCBCSSTTTCSBCTTCBBTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceecCCCCCCceECCCCeEeCCCCcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 6999999999999999999999999999999999999999988866554
No 3
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=100.00 E-value=2.1e-50 Score=398.29 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=134.0
Q ss_pred EEEEeecCCCceEEEeecCCCCCCCee-eeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCC
Q 023276 115 ILEKVMGPVSTGHLELRTRNPNDNPSV-TFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPV 193 (284)
Q Consensus 115 ~~~~~~~p~SrG~V~L~s~dp~~~P~i-~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 193 (284)
+.++.++|+|||+|+|+|+||.+.|+| ++||+++|.|++.+++++|++++|+++++++.+...+. .|+
T Consensus 423 ~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~pg 491 (583)
T 3qvp_A 423 FDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET-----------IPG 491 (583)
T ss_dssp EEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEE-----------ESG
T ss_pred eeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhCcchhhcccccc-----------CCC
Confidence 445669999999999999999999999 99999999999999999999999999999988775332 133
Q ss_pred cCCCCCCCChhHHHHhhccCcccccccccccccC-----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHH
Q 023276 194 NLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 268 (284)
Q Consensus 194 ~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer 268 (284)
... ....+|++|++|+|+...+.||++|||||| +|||++||||||+|||||||||||+++++|||+|+||||||
T Consensus 492 ~~~-~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer 570 (583)
T 3qvp_A 492 DNL-AYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALK 570 (583)
T ss_dssp GGS-CTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHH
T ss_pred ccc-ccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEecCCCeEEeecccCCCCCCcCcHHHHHHHHHH
Confidence 111 124689999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 023276 269 MGVRILSERLA 279 (284)
Q Consensus 269 ~A~~i~~~~~~ 279 (284)
+||.|++ +|+
T Consensus 571 aAd~I~~-~~~ 580 (583)
T 3qvp_A 571 ISDAILE-DYA 580 (583)
T ss_dssp HHHHHHH-HHH
T ss_pred HHHHHHH-hhh
Confidence 8886654 454
No 4
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=100.00 E-value=3e-50 Score=394.20 Aligned_cols=244 Identities=38% Similarity=0.694 Sum_probs=178.0
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCccccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 81 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
+|+++||+|++|||+||+|||||+...+.+..+.+......+..... ..|+..++|++... ...
T Consensus 276 ~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~--------------~~~ 339 (536)
T 1ju2_A 276 YLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGIS--NDFYQCSFSSLPFT--------------TPP 339 (536)
T ss_dssp HHHHTTCCCSEECTTTTEEEECCEEEEEEECCSSCCCCCCCCEEEEC--SSEEEEEEEECCCS--------------SCC
T ss_pred HHHhcCCceEecCcccccchhcCcceeEEEEeCCCcccccchhhhHH--HHHHHcCCCCCCCC--------------hhh
Confidence 58999999999999999999999988777766543221110000000 02222223321110 000
Q ss_pred cccCCCCCCChHHHHHHHHhhhcCCCCCCCceeEEEEeecCCCceEEEe-ecCCCCCCCeeeeCCCCCcchHHHHHHHHH
Q 023276 82 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLEL-RTRNPNDNPSVTFNYFKEPEDLQRCVQGIS 160 (284)
Q Consensus 82 ~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L-~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~ 160 (284)
+..++... ...+ ....+++...+++|+|||+|+| +|+||.+.|+|++||++++.|++.++++++
T Consensus 340 ~~~~~~~~-------------~~~~--~~~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~~~~~~~ 404 (536)
T 1ju2_A 340 FGFFPSSS-------------YPLP--NSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMK 404 (536)
T ss_dssp BTTBSSSC-------------CCCC--SSCEEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHH
T ss_pred heeecCcc-------------cCCC--CcceEEEeeecCCCCcceEEEeCCCCCcccCceecccccCCccHHHHHHHHHH
Confidence 00111100 0001 1112356677899999999999 999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccc-chhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccCceecCCCeEecc
Q 023276 161 TIEKIIESKSFSKFKYESM-SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGV 239 (284)
Q Consensus 161 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv 239 (284)
.+++++++++++.+...+. +.+++.... ...|....+|++|++|+|+...+.||++||||||+|||++||||||
T Consensus 405 ~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-----~~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG~VVD~~lrV~Gv 479 (536)
T 1ju2_A 405 KIGELLSTDALKPYKVEDLPGVEGFNILG-----IPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGI 479 (536)
T ss_dssp HHHHHHTSGGGGGGCSSCCSTTCSCCBSS-----SCCCSCTTCHHHHHHHHHHHCEECSCCEESSCBTTTBCTTSBBTTC
T ss_pred HHHHHHcCccchhhhccccccCCCccccc-----cCCCcccCCHHHHHHHHHhccCccccCcCccCCccEECCCCeEcCC
Confidence 9999999999988765331 111110000 0012234689999999999999999999999999999999999999
Q ss_pred CCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhhc
Q 023276 240 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281 (284)
Q Consensus 240 ~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~~ 281 (284)
+|||||||||||+++++|||+|+||||||+|++|+++.|+..
T Consensus 480 ~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~~~ 521 (536)
T 1ju2_A 480 NALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521 (536)
T ss_dssp BTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999998754
No 5
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=100.00 E-value=2.2e-48 Score=384.76 Aligned_cols=258 Identities=15% Similarity=0.081 Sum_probs=175.9
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCccccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 81 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
+|+++||||++||| ||+|||||+.+.+.+..+.+................|...++|++..... . ..++.......
T Consensus 312 ~L~~~gI~vv~dlP-VG~nL~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~--~-~~~~~~~~~~~ 387 (587)
T 1gpe_A 312 VLDQANVTQLLDLP-VGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNT--K-LDQWAEETVAR 387 (587)
T ss_dssp HHHHTTCCCSEECC-TTCSBBCCEEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHH--S-HHHHHHHHHHT
T ss_pred HHHhCCCCeEEeCC-CCcchhcCcccceEEEeCCCcccccchHHHHHHHHHHHhCCCCCcccccc--c-eeeEeeccccc
Confidence 68999999999999 99999999998887776533211000000001122333333332211000 0 00000000000
Q ss_pred cccCCCCCC--ChHHHHHHHHhhhcCCCC-------CCCceeEEEEeecCCCceEEEeecCCCCCCC-eeeeCCCCCcch
Q 023276 82 LSKVPPKQR--TPEAIAEAIENMKALDDP-------AFRGGFILEKVMGPVSTGHLELRTRNPNDNP-SVTFNYFKEPED 151 (284)
Q Consensus 82 ~~~~p~~~~--~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P-~i~~~yl~~~~D 151 (284)
. . ..... .|++. ..+..+...... .....++.+++++|+|||+|+|+|+||.+.| +|+++|+.++.|
T Consensus 388 ~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D 464 (587)
T 1gpe_A 388 G-G-FHNVTALKVQYE-NYRNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFD 464 (587)
T ss_dssp T-S-CSCHHHHHHHHH-HHHHHHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHH
T ss_pred c-c-ccccccccccHH-HHhhhccCCCCcceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHH
Confidence 0 0 00000 13321 112111100000 0112345678899999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC----
Q 023276 152 LQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG---- 227 (284)
Q Consensus 152 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG---- 227 (284)
++.++++++++++++++++++.+...+. .|+... ....+|++|++|+|+...+.+|++||||||
T Consensus 465 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~pg~~~-~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~ 532 (587)
T 1gpe_A 465 LLGQAAASKLARDLTSQGAMKEYFAGET-----------LPGYNL-VQNATLSQWSDYVLQNFRPNWHAVSSCSMMSREL 532 (587)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHEEEEE-----------ESGGGS-CTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGG
T ss_pred HHHHHHHHHHHHHHHcCcchhhhccccc-----------CCCccc-cCCCCHHHHHHHHHHhcCcccCccCccccCCCCC
Confidence 9999999999999999999888764331 133111 123689999999999999999999999999
Q ss_pred -ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Q 023276 228 -KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 228 -~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
+|||++||||||+|||||||||||+++++||++|+||||||+|+.|+++..
T Consensus 533 ~sVVD~~lrV~Gv~nLrVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~ 584 (587)
T 1gpe_A 533 GGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584 (587)
T ss_dssp TCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceECCCCEEECCCCcEEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999999999999999999999999999988876654
No 6
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=100.00 E-value=3.9e-47 Score=372.88 Aligned_cols=235 Identities=25% Similarity=0.376 Sum_probs=167.8
Q ss_pred ccccCCCcceecCcccCcccccCCCCcEEEecCCCccchhHHhhchhhHHhHHHhccCCCCCCCCCCCCcccccCccccc
Q 023276 2 LSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 81 (284)
Q Consensus 2 ~L~~~gIpVv~DlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
+|+++||+|++||||||+|||||+.+.+.+..+.+..... ........|. ...+ ... ..++ +
T Consensus 288 ~L~~~gi~~~~dlP~VG~nL~dH~~~~~~~~~~~~~~~~~---~~~~~~~~f~--~~~~----~~~-~p~~--------~ 349 (546)
T 2jbv_A 288 HLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAES---TQWWEIGIFT--PTED----GLD-RPDL--------M 349 (546)
T ss_dssp HHHHTTCCCSEECTTTTCSBBCCEECCEEEEESSCCCSCC---SSSCCEEEEE--CSST----TCS-SCSE--------E
T ss_pred HHHhcCCceEeeCcchhhhhhhCccceEEEEecCCCcccc---cchhheEEEE--ecCC----CCC-CCce--------E
Confidence 5899999999999999999999999888777654311000 0000000000 0000 000 0000 0
Q ss_pred cccCCCCCCChHHHHHHHHhhhcCCCCCCCceeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcc--hHHHHHHHH
Q 023276 82 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGI 159 (284)
Q Consensus 82 ~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~--D~~~l~~~~ 159 (284)
+...|... ... +.. .... .......+.+.+++|+|||+|+|+|+||++.|+|+++|++++. |++.+++++
T Consensus 350 ~~~~~~~~-~~~-----~~~-~g~~-~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~ 421 (546)
T 2jbv_A 350 MHYGSVPF-DMN-----TLR-HGYP-TTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGI 421 (546)
T ss_dssp EEEESSCC-CTT-----TGG-GTCC-CCSSEEEEEEEETTCCCCBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHH
T ss_pred EEeccccc-ccc-----ccc-cCcc-CCCCeEEEEEEEcccCcccEEEecCCCCCCCceecccccCCCchhHHHHHHHHH
Confidence 00001000 000 000 0000 0112234567889999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccccccccccC------ceecCC
Q 023276 160 STIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHD 233 (284)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VVD~~ 233 (284)
+.+++++++++++.+...+. .|+ ....+|++|++|+|+...+.+|++|||||| +|||++
T Consensus 422 ~~~~~i~~~~~~~~~~~~~~-----------~p~----~~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~ 486 (546)
T 2jbv_A 422 RKAREIAAQPAMAEWTGREL-----------SPG----VEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486 (546)
T ss_dssp HHHHHHHTSGGGTTTEEEEE-----------ESC----TTCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTT
T ss_pred HHHHHHHcCcchhhcccccc-----------cCC----CCCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCC
Confidence 99999999999888764331 133 246789999999999999999999999999 799999
Q ss_pred CeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 234 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 234 lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
||||||+|||||||||||+++++||++|+||||||+|+.|+++.
T Consensus 487 lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~ 530 (546)
T 2jbv_A 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530 (546)
T ss_dssp CBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC----
T ss_pred CEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998887654
No 7
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=100.00 E-value=5.7e-45 Score=353.95 Aligned_cols=146 Identities=19% Similarity=0.315 Sum_probs=133.1
Q ss_pred eeEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCC
Q 023276 113 GFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAP 192 (284)
Q Consensus 113 ~~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 192 (284)
..+...+++|+|||+|+|+|+||.+.|+|+++|++++.|++.++++++.+++++++++++.+...+. .|
T Consensus 372 ~~~~~~l~~p~srG~v~~~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~-----------~p 440 (526)
T 3t37_A 372 YSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWREREL-----------LP 440 (526)
T ss_dssp EEEEEEESSCCCCBEEECSSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEEC-----------SS
T ss_pred eeeeccccCccccCcceeccCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc-----------CC
Confidence 3466788999999999999999999999999999999999999999999999999998888775432 23
Q ss_pred CcCCCCCCCChhHHHHhhccCcccccccccccccC----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHH
Q 023276 193 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 268 (284)
Q Consensus 193 ~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer 268 (284)
+ ...+|+++++|+|+...+.||++|||||| +|||++|||||++|||||||||||+++++|||+|+||||||
T Consensus 441 g-----~~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEk 515 (526)
T 3t37_A 441 G-----TPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAET 515 (526)
T ss_dssp C-----CCCSHHHHHHHHHHHEEECSCCBCTTCBCSSTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHH
T ss_pred C-----CCCCHHHHHHHHHhcCccCcccCccccCCCCCCccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHHHH
Confidence 3 34688999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 023276 269 MGVRIL 274 (284)
Q Consensus 269 ~A~~i~ 274 (284)
+||+--
T Consensus 516 aAd~~~ 521 (526)
T 3t37_A 516 FARQYH 521 (526)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998643
No 8
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=100.00 E-value=7e-43 Score=342.03 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=164.9
Q ss_pred ccccC------CCcce-----ecCcccCcccccCCCCcEEEecCCCc-cc-hhHH-h--hchhhHHhHHHhccCCCCCCC
Q 023276 2 LSGAH------NITVV-----LDQPLVGQGMSDNPMNAIFVPSPVPV-EV-SLIQ-V--VGITQFGSYIEAASGENFAGG 65 (284)
Q Consensus 2 ~L~~~------gIpVv-----~DlPgVG~NLqDH~~~~~~~~~~~~~-~~-~~~~-~--~~~~~~~~~~~~~~G~~~~~~ 65 (284)
+|+++ ||+|+ +||| ||+|||||+.+.+.+.. .+. .. .... . ........|+..++|++....
T Consensus 276 ~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL~DH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 353 (546)
T 1kdg_A 276 MIQTVQSNPTAAAALPPQNQWINLP-VGMNAQDNPSINLVFTH-PSIDAYENWADVWSNPRPADAAQYLANQSGVFAGAS 353 (546)
T ss_dssp HHHHHHTSHHHHHHSCCGGGCBCCC-TTTTBBCCCCEEEEEEC-TTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCS
T ss_pred HHHHhhccccCCcccccccccccCC-cccCcccCcceeEEEec-CCcccccchhhhhcchhHHHHHHHHHcCCcccccCC
Confidence 57788 69985 8999 99999999998887772 222 11 1100 0 011223467777888754321
Q ss_pred CCCCCcccccCccccccccCCCCCCChHHHHHHHHh----hhcC-CCCCCCceeEEEEeecC-CCceEEEeecCCCCCCC
Q 023276 66 SPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIEN----MKAL-DDPAFRGGFILEKVMGP-VSTGHLELRTRNPNDNP 139 (284)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~p-~SrG~V~L~s~dp~~~P 139 (284)
. ..+++..... .....+.+. ..+.+ .... +........+...+++| +|||+|+|+|+| ..|
T Consensus 354 ~----~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~ 420 (546)
T 1kdg_A 354 P----KLNFWRAYSG------SDGFTRYAQ-GTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGT 420 (546)
T ss_dssp C----CEEEEEEEEC------TTSCEEEEE-EEEEESCSCCCCSSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEE
T ss_pred c----ceEEEEccCC------CCcchhhhh-heecccccccccccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCC
Confidence 1 0111110000 000000000 00000 0000 00011123455678898 999999999988 567
Q ss_pred eeeeCCCCCcchHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCCCCcCCCCCCCChhHHHHhhccCcccccc
Q 023276 140 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWH 219 (284)
Q Consensus 140 ~i~~~yl~~~~D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H 219 (284)
.|+++|+.++.|++.|++++|.+++++++++...+. .|+ ...+|+++.+|++....+.+|
T Consensus 421 ~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~---------------~p~-----~~~~~~~~~~~~~~~~~t~~H 480 (546)
T 1kdg_A 421 VLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI---------------TPD-----VTQTLEEYVDAYDPATMNSNH 480 (546)
T ss_dssp EEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE---------------ESC-----TTSCHHHHHHHSCGGGGCCSC
T ss_pred cccccccCCchHHHHHHHHHHHHHHHhcCCCccccc---------------CCC-----CCCCHHHHHHHHHHhcCcccc
Confidence 899999999999999999999999999876533211 133 235788999999998899999
Q ss_pred cccccccC-----ceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 220 YHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 220 ~~GTc~MG-----~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
++|||||| +|||++|||||++|||||||||||+++++||++|+||||||+|+.|+++
T Consensus 481 ~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~ 542 (546)
T 1kdg_A 481 WVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILAL 542 (546)
T ss_dssp CBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHS
T ss_pred cccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 99999999 7999999999999999999999999999999999999999999877654
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=100.00 E-value=6.8e-35 Score=283.25 Aligned_cols=132 Identities=21% Similarity=0.289 Sum_probs=108.7
Q ss_pred eEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHHHHH-HHHHHHhccccccccccccchhhhhhcccCCC
Q 023276 114 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIS-TIEKIIESKSFSKFKYESMSVPILVNMTASAP 192 (284)
Q Consensus 114 ~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 192 (284)
.++..+++|+|||+|+|+|+|| .|+++|+.++ | +.++++++ .+++++++++. +.
T Consensus 369 ~~~~~~~~p~srG~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~----------------- 423 (504)
T 1n4w_A 369 SLYLAITKNPQRGTFVYDAATD----RAKLNWTRDQ-N-APAVNAAKALFDRINKANGT--IY----------------- 423 (504)
T ss_dssp EEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CB-----------------
T ss_pred hhheeeeccCCCcEEEecCCCC----ceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC--Cc-----------------
Confidence 4567788999999999999876 6999999999 9 88999999 99999987653 11
Q ss_pred CcCCCCCCCChhHHHHhhccCcccccccccccccCceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHH
Q 023276 193 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 272 (284)
Q Consensus 193 ~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~ 272 (284)
+ .....+ +++++ ...+.+|++||||||+|||++|||||++|||||||||||+++++||++|+||||||+|+.
T Consensus 424 ~----~~~~~~-~~~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~ 495 (504)
T 1n4w_A 424 R----YDLFGT-QLKAF---ADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVER 495 (504)
T ss_dssp C----CSSSSS-SCCSE---ECSEESSCBCSSCTTTTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHH
T ss_pred C----Cchhhh-hhhhh---ccCccccccCCceeeeEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHH
Confidence 1 000000 01112 456899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhh
Q 023276 273 ILSERL 278 (284)
Q Consensus 273 i~~~~~ 278 (284)
|+++..
T Consensus 496 I~~~~~ 501 (504)
T 1n4w_A 496 IIKQDV 501 (504)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 877654
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=99.97 E-value=1.4e-31 Score=260.09 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=110.4
Q ss_pred eEEEEeecCCCceEEEeecCCCCCCCeeeeCCCCCcchHHHHHHHHH-HHHHHHhccccccccccccchhhhhhcccCCC
Q 023276 114 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIS-TIEKIIESKSFSKFKYESMSVPILVNMTASAP 192 (284)
Q Consensus 114 ~~~~~~~~p~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~p 192 (284)
.++.++++|+|||+|+|+|+|| .|+++|+.++ | +.++++++ .+++++++.+. +...
T Consensus 374 ~~~~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~~~--------------- 430 (507)
T 1coy_A 374 SLYLAITKNPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMAKKVFDKINQKEGT--IYRT--------------- 430 (507)
T ss_dssp EEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CBCS---------------
T ss_pred eeeEEEeeeCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHHHHHHHHHHhhcCC--cccC---------------
Confidence 4556778999999999998876 8999999999 9 67888888 99999987652 2210
Q ss_pred CcCCCCCCCChhHHHHhhccCcccccccccccccCceecCCCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHH
Q 023276 193 VNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVR 272 (284)
Q Consensus 193 ~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~ 272 (284)
+...+|+ ++| ...+.+|++||||||+|||++|||||++|||||||||||+++++||++|+||||||+|+.
T Consensus 431 -----~~~~~d~--~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~ 500 (507)
T 1coy_A 431 -----DLFGVYY--KTW---GDDFTYHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDK 500 (507)
T ss_dssp -----SCC--CC--CSS---BCSEESCCBCSSCTTTTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHH
T ss_pred -----cccccch--hhh---cccccccccCCcchhheECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHH
Confidence 0112333 334 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 023276 273 ILSERLA 279 (284)
Q Consensus 273 i~~~~~~ 279 (284)
|++++++
T Consensus 501 I~~~~~~ 507 (507)
T 1coy_A 501 IISSDIQ 507 (507)
T ss_dssp HHHHTC-
T ss_pred HHHHhcC
Confidence 9988764
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=99.97 E-value=4.4e-31 Score=262.61 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=115.1
Q ss_pred EEEEeecCCCceEEEeec--CCCCCCCeeeeCCCCCcc-hHHHHHHHHHHHHHHHhccccccccccccchhhhhhcccCC
Q 023276 115 ILEKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPE-DLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASA 191 (284)
Q Consensus 115 ~~~~~~~p~SrG~V~L~s--~dp~~~P~i~~~yl~~~~-D~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
.+...+.|.++|+|+|++ +|+++.|+++++|..++. |++.+.++++.+++++...+.....
T Consensus 472 ~~~~e~~p~~~n~v~L~~~~~D~~g~P~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~---------------- 535 (623)
T 3pl8_A 472 RFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGGFLPG---------------- 535 (623)
T ss_dssp EEEECCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEEECTT----------------
T ss_pred EEEEeeccCCCCEEEECCCCcCCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHhcCCcccC----------------
Confidence 335667899999999987 899999999999999999 9999999999999999865432111
Q ss_pred CCcCCCCCCCChhHHHHhhccCcccccccccccccC------cee-cCCCeEeccCCeEEeeccCCCCCCCCccHHHHHH
Q 023276 192 PVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVV-DHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 264 (284)
Q Consensus 192 p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VV-D~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~a 264 (284)
+++.+ ....+++|++|||||| +|| |++|||||++||||+|+|+||+.+++||++|+||
T Consensus 536 ----------~~~~~-----~~~~~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a 600 (623)
T 3pl8_A 536 ----------SLPQF-----MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMS 600 (623)
T ss_dssp ----------SCSEE-----CCTTTTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHH
T ss_pred ----------chhhc-----cCCCCcccCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHH
Confidence 00100 0135689999999999 586 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q 023276 265 LGRYMGVRILSERLASN 281 (284)
Q Consensus 265 iaer~A~~i~~~~~~~~ 281 (284)
+|+|+|+.|+++...++
T Consensus 601 ~a~r~a~~i~~~~~~~~ 617 (623)
T 3pl8_A 601 LAIKSCEYIKQNFTPSP 617 (623)
T ss_dssp HHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 99999999998876554
No 12
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=71.97 E-value=2.3 Score=39.61 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=24.7
Q ss_pred CCeEeccCCeEEeeccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhhc
Q 023276 233 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 281 (284)
Q Consensus 233 ~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~~ 281 (284)
..+.-.++||+.+.+|++|-. + ...+++=|..+|+.|+++..+++
T Consensus 451 ~~~~t~i~gLyl~G~~t~pG~--G--v~ga~~SG~~aA~~il~dL~gG~ 495 (501)
T 4dgk_A 451 HNRDKTITNLYLVGAGTHPGA--G--IPGVIGSAKATAGLMLEDLIGGS 495 (501)
T ss_dssp -----CCTTEEECCCH----------HHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCCCCEEEECCCCCCcc--c--HHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567999999999998731 1 22334448999999999887764
No 13
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=62.43 E-value=7.3 Score=36.87 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=35.7
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHH
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
+||+.||+.+.+|++++ |++..|..+.+ ...+..|+.+|+.|.+
T Consensus 354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a---~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTA---QVAHQEAEYLAKNFDK 398 (502)
T ss_dssp EBCTTSBBTTCSSEEECGGGEESSSCCCH---HHHHHHHHHHHHHHHH
T ss_pred eECCccccCCCCCEEEEEcccCCCCCCch---HHHHHHHHHHHHHHHH
Confidence 69999999999999999 99999877653 3466677877877754
No 14
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=56.92 E-value=14 Score=33.78 Aligned_cols=51 Identities=6% Similarity=-0.002 Sum_probs=38.1
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCC-----CCcc--HHHHHHHHHHHHHHHHHhhhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSP-----GTNP--QATVMMLGRYMGVRILSERLA 279 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~-----~~n~--~~t~~aiaer~A~~i~~~~~~ 279 (284)
+||+.+|+-+.+|++.+ |++-+|... .+.| ...+...|+-+|+.|++...+
T Consensus 276 ~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g 334 (430)
T 3hyw_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRN 334 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999 999888542 2333 335666788888888766543
No 15
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=52.50 E-value=21 Score=30.29 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=34.8
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhhhhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 280 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~~~ 280 (284)
.||++++. .++|++++ |+.-.| +........+.-|..+|..|.+...+.
T Consensus 270 ~vd~~~~t-~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 270 KVDEWMRT-SVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp CCCTTCBC-SSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcee-cCCCEEEcceecCCC--CcccceeehhhHHHHHHHHHHHHHHHh
Confidence 68999986 89999999 877665 333445566667777777776655443
No 16
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=43.70 E-value=8.6 Score=29.87 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.5
Q ss_pred cCCCcceecCcccCcccccCCCCc
Q 023276 5 AHNITVVLDQPLVGQGMSDNPMNA 28 (284)
Q Consensus 5 ~~gIpVv~DlPgVG~NLqDH~~~~ 28 (284)
+-|..|.+=.||.|-|||+|-.+.
T Consensus 61 ~ngk~VtAyIPG~GhnlqEhs~VL 84 (135)
T 2vqe_L 61 TSGYEVTAYIPGEGHNLQEHSVVL 84 (135)
T ss_dssp TTSCEEEEECCSSCCCCCTTCEEE
T ss_pred CCCCEEEEEcCCCCCccCcCCEEE
Confidence 568889999999999999996543
No 17
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=35.30 E-value=53 Score=29.72 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=36.2
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCC-----CC--CccHHHHHHHHHHHHHHHHHhhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYS-----PG--TNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~-----~~--~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
.||+.+|.-+.+|++++ |+.-+|.. |. ..+....+..|..+|+.|.+...
T Consensus 276 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCccccCCCCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999 88777642 11 12345566678888887776554
No 18
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=33.34 E-value=42 Score=31.86 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=39.5
Q ss_pred cccCce-ecCCCeEe-----ccCCeEEee---ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 224 CQVGKV-VDHDYKVL-----GVDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 224 c~MG~V-VD~~lrV~-----Gv~~LrVvD---aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
..||++ ||.++||. -+.|||.+. ++++- .-+++|..+..+..|.+|++.+.+.
T Consensus 505 ~t~GGl~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~ 567 (571)
T 1y0p_A 505 HTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY 567 (571)
T ss_dssp EECCEEEBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 357774 89999994 589999983 45553 3356888888999999988877543
No 19
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=32.85 E-value=64 Score=29.29 Aligned_cols=50 Identities=8% Similarity=-0.082 Sum_probs=35.9
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCC-----CCCc--cHHHHHHHHHHHHHHHHHhhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYS-----PGTN--PQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~-----~~~n--~~~t~~aiaer~A~~i~~~~~ 278 (284)
.||+.+|.-+.+|++++ |+.-+|.. +... +....+..|..+|+.|.+...
T Consensus 287 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~ 344 (437)
T 3sx6_A 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLE 344 (437)
T ss_dssp CBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999 88877742 1112 344566677788887776543
No 20
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=30.76 E-value=62 Score=28.88 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=33.2
Q ss_pred ceecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 228 KVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 228 ~VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
-.||+.+|+.+.+|++++ |++-+|.. ........-|..+|+.|.+..
T Consensus 288 i~vd~~~~~~~~~~vfa~GD~~~~~~~---~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 288 IPTDLNMVSIKYDNVYAVGDANSMTVP---KLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp BCBBTTSBBSSCTTEEECGGGBTTCCS---CCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCcccccCCCCCEEEeehhccCCCC---cHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999 77766432 233445666777777766543
No 21
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=27.55 E-value=55 Score=32.05 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred cccCc-eecCCCeEeccCCeEEeec----cCCC-CCCCCccHHHHHHHHHHHHHHHHH
Q 023276 224 CQVGK-VVDHDYKVLGVDALRVIDG----STFY-YSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 224 c~MG~-VVD~~lrV~Gv~~LrVvDa----Sv~P-~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
..||+ .||.+++| -|+||+.+.- ++.- .-.++|..+..+..|.+|++.+.+
T Consensus 370 yt~GGi~vd~~~~v-~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~ 426 (660)
T 2bs2_A 370 YSMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 426 (660)
T ss_dssp EECCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eccceEEECCCCce-ecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 35777 58999999 9999999932 3332 234678878888888887777654
No 22
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=26.82 E-value=95 Score=26.06 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=32.4
Q ss_pred ceecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Q 023276 228 KVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 278 (284)
Q Consensus 228 ~VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~~ 278 (284)
-+||+++| -.++|++++ |+.-.|. ......+.-|..+|..|.+...
T Consensus 259 i~vd~~~~-t~~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 259 IIIDAKCE-TNVKGVFAAGDCTTVPY----KQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp BCCCTTCB-CSSTTEEECSTTBSCSS----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCc-cCCCCEEEeecccCCcc----hhhhhhHhhHHHHHHHHHHHHH
Confidence 37899998 688999999 7766552 2344556677788877766543
No 23
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=26.32 E-value=47 Score=31.00 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=39.0
Q ss_pred cccCc-eecCCCeEec-----cCCeEEee---ccCC-CCCCCCccHHHHHHHHHHHHHHHHH
Q 023276 224 CQVGK-VVDHDYKVLG-----VDALRVID---GSTF-YYSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 224 c~MG~-VVD~~lrV~G-----v~~LrVvD---aSv~-P~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
+.||+ .+|.++||.. +.|||.+. ++++ ..-+++|.....+..|.+|++.+.+
T Consensus 447 ~t~GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 447 FTLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp EECCEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcCeeECCCCceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 46776 5788888864 77899984 3666 3446788899999999998876643
No 24
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=25.82 E-value=66 Score=30.45 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=39.6
Q ss_pred ccccCce-ecCCCeEe-----ccCCeEEee---ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 223 GCQVGKV-VDHDYKVL-----GVDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 223 Tc~MG~V-VD~~lrV~-----Gv~~LrVvD---aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
...||++ ||.++||. -+.|||.+. ++++- .-+++|..+..+..|.+|++.+.+.
T Consensus 499 ~~t~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~ 562 (566)
T 1qo8_A 499 HHTMGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKH 562 (566)
T ss_dssp EEECCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccEEECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3467874 89999995 688999983 35553 3456888888888899988877543
No 25
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=25.65 E-value=68 Score=28.42 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=34.0
Q ss_pred eecCC-CeEeccCCeEEe-ecc-CCCCCCCCccHHHHHHHHHHHHHHHHHhhhh
Q 023276 229 VVDHD-YKVLGVDALRVI-DGS-TFYYSPGTNPQATVMMLGRYMGVRILSERLA 279 (284)
Q Consensus 229 VVD~~-lrV~Gv~~LrVv-DaS-v~P~~~~~n~~~t~~aiaer~A~~i~~~~~~ 279 (284)
.||++ +|.-+.+|++.+ |+. ..|... +...++.-|.-+|+.|+....+
T Consensus 275 ~VD~~tl~~t~~p~VfAiGDva~~~~~pk---~a~~A~~qa~v~A~ni~~~l~G 325 (401)
T 3vrd_B 275 PVDIRTFESSLQPGIHVIGDACNAAPMPK---SAYSANSQAKVAAAAVVALLKG 325 (401)
T ss_dssp CBCTTTCBBSSSTTEEECGGGBCCTTSCB---SHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCcceecCCCCEEEecccccCCCCCc---hHHHHHHHHHHHHHHHHHHhcC
Confidence 68987 899999999999 754 455432 3345566778888877765543
No 26
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.91 E-value=72 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=40.0
Q ss_pred ccccCce-ecCCCeEe------ccCCeEEee---ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 223 GCQVGKV-VDHDYKVL------GVDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 223 Tc~MG~V-VD~~lrV~------Gv~~LrVvD---aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
...||++ ||.++||. -+.|||.+. ++++= .-+++|..+..+..|.+|++.+.+.
T Consensus 504 ~~t~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~ 568 (572)
T 1d4d_A 504 HHTMGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKF 568 (572)
T ss_dssp EEECCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeCCCeEECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 3457874 89999985 378899983 45553 3357888889999999988877643
No 27
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=22.87 E-value=1.3e+02 Score=22.91 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=30.8
Q ss_pred eecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 229 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 229 VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
.||+.+|. .++|++++ |+.-.|. + .....+.-|..+|..|....
T Consensus 126 ~vd~~~~t-~~~~i~a~GD~~~~~~-~---~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 126 DTDEGGRT-SYPRVYAAGVARGKVP-G---HAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp CCCTTCBC-SSTTEEECGGGGTCCS-C---CHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCc-CCCCEEEeecccCcch-h---hHHHHHHhHHHHHHHHHHHh
Confidence 48999998 88999999 7766553 1 23445566777777776543
No 28
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=22.70 E-value=68 Score=30.87 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.7
Q ss_pred cccccCc-eecCCCeEeccCCeEEe-ec---cCCC-CCCCCccHHHHHHHHHHHHHHHHH
Q 023276 222 GGCQVGK-VVDHDYKVLGVDALRVI-DG---STFY-YSPGTNPQATVMMLGRYMGVRILS 275 (284)
Q Consensus 222 GTc~MG~-VVD~~lrV~Gv~~LrVv-Da---Sv~P-~~~~~n~~~t~~aiaer~A~~i~~ 275 (284)
.-..||+ .||.++|| -++||+.+ ++ ++.- .-.++|..+-.+..|.++++.+.+
T Consensus 355 ~h~t~GGi~vd~~~~~-~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~ 413 (602)
T 1kf6_A 355 AHYTMGGIETDQNCET-RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATE 413 (602)
T ss_dssp EEEECCEEECCTTSBC-SSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred heeeCCeEEECCCCcc-ccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3345787 48999999 99999999 33 3322 234567777777778887776654
No 29
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=21.99 E-value=1.3e+02 Score=25.07 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=31.2
Q ss_pred ceecCCCeEeccCCeEEe-eccCCCCCCCCccHHHHHHHHHHHHHHHHHhh
Q 023276 228 KVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSER 277 (284)
Q Consensus 228 ~VVD~~lrV~Gv~~LrVv-DaSv~P~~~~~n~~~t~~aiaer~A~~i~~~~ 277 (284)
=.||+.+|. .++|++++ |+.-.+ .......+.-|..+|..|.+..
T Consensus 266 i~vd~~~~t-~~~~v~a~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 266 VSVDLKMQT-SVAGLFAAGDLRKDA----PKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp BCCCTTCBC-SSTTEEECGGGBTTC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccc-CCCCEEEeecccCCc----hhhhhhHHhhHHHHHHHHHHHH
Confidence 378999997 89999999 765322 2234455667787777776544
No 30
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=21.68 E-value=1.2e+02 Score=29.40 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=39.7
Q ss_pred cccCc-eecCCCeEec--------cCCeEEee----ccCCC-CCCCCccHHHHHHHHHHHHHHHHHh
Q 023276 224 CQVGK-VVDHDYKVLG--------VDALRVID----GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 276 (284)
Q Consensus 224 c~MG~-VVD~~lrV~G--------v~~LrVvD----aSv~P-~~~~~n~~~t~~aiaer~A~~i~~~ 276 (284)
..||+ .||.++||.. |+||+.+. +|+.= .-.++|..+-.+..|.+|++.+.+.
T Consensus 365 ~tmGGi~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~ 431 (621)
T 2h88_A 365 YNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAET 431 (621)
T ss_dssp EESCBEEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcEeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHh
Confidence 36787 4899999954 99999983 24543 2357888888999999988877654
Done!