BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023277
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 184/277 (66%), Positives = 235/277 (84%), Gaps = 3/277 (1%)
Query: 6 RPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGM 65
RPP VTNAVSWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGM
Sbjct: 148 RPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGM 207
Query: 66 PECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMT 125
PE +LGLND++L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+
Sbjct: 208 PELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMS 266
Query: 126 YRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVR 185
YRLNT VKPLIW+E+ +E+HS SR+E +VKA+SQFK RSTA NVEI +PV +DA +P +
Sbjct: 267 YRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFK 326
Query: 186 TSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPY 245
T++GS +VPE+ ++W ++SFPGGKEY++RA F LPS+ AE+ E K PI VKFEIPY
Sbjct: 327 TTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDK--EGKPPISVKFEIPY 384
Query: 246 FTVSGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 282
FT SGIQVRYLKIIEKSGY A+PWVRYIT G+Y+LR
Sbjct: 385 FTTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLR 421
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust.
Identities = 177/267 (66%), Positives = 227/267 (85%), Gaps = 3/267 (1%)
Query: 16 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 75
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 60
Query: 76 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 135
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 119
Query: 136 IWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVP 195
IW+E+ +E+HS SR+E +VKA+SQFK RSTA NVEI +PV +DA +P +T++GS +VP
Sbjct: 120 IWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVP 179
Query: 196 EDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 255
E+ ++W ++SFPGGKEY++RA F LPS+ AE+ E K PI VKFEIPYFT SGIQVRY
Sbjct: 180 ENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRY 237
Query: 256 LKIIEKSGYHALPWVRYITMAGEYELR 282
LKIIEKSGY ALPWVRYIT G+Y+LR
Sbjct: 238 LKIIEKSGYQALPWVRYITQNGDYQLR 264
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 174/267 (65%), Positives = 222/267 (83%), Gaps = 3/267 (1%)
Query: 16 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 75
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++K R +LSG PE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDK 60
Query: 76 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 135
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+L +YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTHVKPL 119
Query: 136 IWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVP 195
IW+E+ +E+HS SR+E VKA+SQFK RSTA NVEI +PV +DA +P +T++GS +VP
Sbjct: 120 IWIESVIEKHSHSRIEYXVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVP 179
Query: 196 EDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRY 255
E+ ++W ++SFPGGKEY+ RA F LPS+ AE+ E K PI VKFEIPYFT SGIQVRY
Sbjct: 180 ENSEIVWSVKSFPGGKEYLXRAHFGLPSVEAEDK--EGKPPISVKFEIPYFTTSGIQVRY 237
Query: 256 LKIIEKSGYHALPWVRYITMAGEYELR 282
LKIIEKSGY ALPWVRYIT G+Y+LR
Sbjct: 238 LKIIEKSGYQALPWVRYITQNGDYQLR 264
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 172/284 (60%), Gaps = 14/284 (4%)
Query: 11 VTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKL 70
VT + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK
Sbjct: 41 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 100
Query: 71 GLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDL 123
G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+L
Sbjct: 101 GMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL 160
Query: 124 MTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPD 183
M YR + V V R+++E+ V +S FK A +E+ +P + S
Sbjct: 161 MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 220
Query: 184 VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEI 243
V G A Y + A++WKI+ G KE + AE L + + + PI + FE+
Sbjct: 221 VICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEV 278
Query: 244 PYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 283
P F SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 279 P-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 321
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 172/284 (60%), Gaps = 14/284 (4%)
Query: 11 VTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKL 70
VT + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK
Sbjct: 34 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 93
Query: 71 GLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDL 123
G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+L
Sbjct: 94 GMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL 153
Query: 124 MTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPD 183
M YR + V V R+++E+ V +S FK A +E+ +P + S
Sbjct: 154 MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 213
Query: 184 VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEI 243
V G A Y + A++WKI+ G KE + AE L + + + PI + FE+
Sbjct: 214 VICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEV 271
Query: 244 PYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELRL 283
P F SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 272 P-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 314
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 172/283 (60%), Gaps = 14/283 (4%)
Query: 11 VTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKL 70
VT + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK
Sbjct: 155 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214
Query: 71 GLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDL 123
G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+L
Sbjct: 215 GMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL 274
Query: 124 MTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPD 183
M YR + V V R+++E+ V +S FK A +E+ +P + S
Sbjct: 275 MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQ 334
Query: 184 VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEI 243
V G A Y + A++WKI+ G KE + AE L + + + PI + FE+
Sbjct: 335 VICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEV 392
Query: 244 PYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
P F SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 393 P-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 171/286 (59%), Gaps = 14/286 (4%)
Query: 8 PMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPE 67
P + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPE
Sbjct: 16 PRGSHMQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 75
Query: 68 CKLGLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGS 120
CK G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG
Sbjct: 76 CKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 135
Query: 121 FDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDAS 180
F+LM YR + V V R+++E+ V +S FK A +E+ +P + S
Sbjct: 136 FELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTS 195
Query: 181 NPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVK 240
V G A Y + A++WKI+ G KE + AE L + + + PI +
Sbjct: 196 GVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMN 253
Query: 241 FEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
FE+P F SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 254 FEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 298
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 170/279 (60%), Gaps = 14/279 (5%)
Query: 15 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 74
+ WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 68
Query: 75 RILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 127
+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 69 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 128
Query: 128 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTS 187
+ V V R+++E+ V +S FK A +E+ +P + S V
Sbjct: 129 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 188
Query: 188 MGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFT 247
G A Y + A++WKI+ G KE + AE L + + + PI + FE+P F
Sbjct: 189 KGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FA 245
Query: 248 VSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 246 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 284
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 172/294 (58%), Gaps = 25/294 (8%)
Query: 11 VTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKL 70
VT + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK
Sbjct: 155 VTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKF 214
Query: 71 GLNDRILLEAQGRSTK-----------------GK-AIDLDDIKFHQCVRLARFENDRTI 112
G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+I
Sbjct: 215 GMNDKIVIEKQGKGTADETSKSMEQKLISEEDLGKQSIAIDDCTFHQCVRLSKFDSERSI 274
Query: 113 SFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIE 172
SFIPPDG F+LM YR + V V R+++E+ V +S FK A +E+
Sbjct: 275 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVR 334
Query: 173 LPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPE 232
+P + S V G A Y + A++WKI+ G KE + AE L + +
Sbjct: 335 IPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKW 392
Query: 233 RKAPIRVKFEIPYFTVSGIQVRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
+ PI + FE+P F SG++VRYLK+ E S + + WVRYI +G YE R
Sbjct: 393 ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 445
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 167/274 (60%), Gaps = 14/274 (5%)
Query: 20 EGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLE 79
EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 80 AQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV 132
QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR +
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI 136
Query: 133 KPLIWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSAS 192
V V R+++E+ V +S FK A +E+ +P + S V G A
Sbjct: 137 ILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 196
Query: 193 YVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQ 252
Y + A++WKI+ G KE + AE L + + + PI + FE+P F SG++
Sbjct: 197 YKASENAIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLK 253
Query: 253 VRYLKIIEK----SGYHALPWVRYITMAGEYELR 282
VRYLK+ E S + + WVRYI +G YE R
Sbjct: 254 VRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 287
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 161/268 (60%), Gaps = 14/268 (5%)
Query: 26 KNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 85
+NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 179
Query: 86 ------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWV 138
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V
Sbjct: 180 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 239
Query: 139 EAQVERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSMGSASYVPEDE 198
V R+++E+ V +S FK A +E+ +P + S V G A Y +
Sbjct: 240 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 299
Query: 199 ALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKI 258
A++WKI+ G KE + AE L + + + PI + FE+P F SG++VRYLK+
Sbjct: 300 AIVWKIKRMAGMKESQISAEIEL--LPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKV 356
Query: 259 IEK----SGYHALPWVRYITMAGEYELR 282
E S + + WVRYI +G YE R
Sbjct: 357 FEPKLNYSDHDVIKWVRYIGRSGIYETR 384
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 140/274 (51%), Gaps = 27/274 (9%)
Query: 15 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG-LN 73
+ WR G++Y NE + DVVE ++ +++ +G + +++ G + LSGMP+ L +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 74 DRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ-- 131
R+L DD+ FH C+R R+E++R +SFIPPDG+F L++YR+++Q
Sbjct: 68 PRLL---------------DDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNL 112
Query: 132 VKPLIWVEAQV---ERHSRSRVEILVKARSQFKERSTATNVEIELPVSSDASNPDVRTSM 188
V ++V+ + E S R +I + + + V + +P N ++ +
Sbjct: 113 VAIPVYVKHNISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMP--KVVLNMNLTPTQ 170
Query: 189 GSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSITAEEATPERKAPIRVKFEIPYFTV 248
GS ++ P + L W + K L+ L ++ + PE + ++F+I +
Sbjct: 171 GSYTFDPVTKVLAWDVGKITPQKLPSLKG---LVNLQSGAPKPEENPNLNIQFKIQQLAI 227
Query: 249 SGIQVRYLKIIEKSGYHALPWVRYITMAGEYELR 282
SG++V L + + Y V+YIT AG++++R
Sbjct: 228 SGLKVNRLDMYGEK-YKPFKGVKYITKAGKFQVR 260
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 148/291 (50%), Gaps = 34/291 (11%)
Query: 15 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 74
+S RS+ Q +KNEVFLDVVE +++L+ SNG +++ DV G ++++++L E ++GL +
Sbjct: 23 LSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTE 80
Query: 75 RILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV-K 133
+ G I +D++ FH V L FE+ R + PP G +M Y+L+ +
Sbjct: 81 EFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPS 140
Query: 134 PL---IWVEAQVERHSRSRVEILVKARSQFKERSTATNVEIELP-------VSSDASNPD 183
PL ++ Q +R S R+++ +K R +S A NV + LP +S + S+P+
Sbjct: 141 PLPFRLFPSVQWDRGS-GRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPE 199
Query: 184 VRTSMGSASYVPEDEALIWKIRSFPGGKEYMLRAEFTLPSIT---------AEEATPERK 234
+ + AL W + GG + L F + + A+P
Sbjct: 200 QKAELAEG-------ALRWDLPRVQGGSQ--LSGLFQMDVPGPPGPPSHGLSTSASPLGL 250
Query: 235 APIRVKFEIPYFTVSGIQVRYLKIIEKSGYHALP--WVRYITMAGEYELRL 283
P + FE+P T SG+QVR+L++ + +A P WVR+++ + Y +R+
Sbjct: 251 GPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 115 IPPDGSFDLMTYRLNTQVKPLIWVEAQVERH-------SRSRVEILVKARSQFKERSTAT 167
IP D +D++T+ W +H RS V+I VK + TA
Sbjct: 205 IPLDVXYDVVTHAAGNS-----WXFENRXQHVVDGDYTPRSAVDIFVKDLGLVAD--TAK 257
Query: 168 NVEIELPVSSDASNPDVRTSMGSASYVPEDEALIWKIRSFPG 209
+ LP++S A N TS +A Y ED++ + KI S G
Sbjct: 258 ALRFPLPLASTALN--XFTSASNAGYGKEDDSAVIKIFSGEG 297
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 154 VKARSQFKERSTATNVEIELPVSS-DASNPDVRTSMGSASYVPED 197
+KA + + T +NV++ + S D+S+PD+ + G AS+VP +
Sbjct: 11 IKAPALHSQGYTGSNVKVAVLASGIDSSHPDLNVA-GGASFVPSE 54
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 154 VKARSQFKERSTATNVEIELPVSS-DASNPDVRTSMGSASYVPED 197
+KA + + T +NV++ + S D+S+PD+ + G AS+VP +
Sbjct: 11 IKAPALHSQGYTGSNVKVAVLASGIDSSHPDLNVA-GGASFVPSE 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,251,778
Number of Sequences: 62578
Number of extensions: 326254
Number of successful extensions: 1024
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 26
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)