Query 023278
Match_columns 284
No_of_seqs 27 out of 29
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 04:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c3v_A Alpha-amylase G-6; carb 93.2 0.086 3E-06 41.4 4.2 71 104-187 6-77 (102)
2 2laa_A Beta/alpha-amylase; SBD 91.7 0.12 4E-06 40.7 3.1 68 106-188 3-73 (104)
3 3d6x_A (3R)-hydroxymyristoyl-[ 33.4 7.7 0.00026 29.1 -0.3 20 120-142 37-57 (146)
4 2e9g_A AP-1 complex subunit ga 25.9 93 0.0032 24.3 4.7 29 172-200 40-69 (131)
5 2rp4_A Transcription factor P5 23.0 36 0.0012 26.3 1.7 13 185-197 19-31 (76)
6 1gyu_A Adapter-related protein 20.1 88 0.003 24.9 3.5 29 172-200 49-78 (140)
7 1iu1_A Gamma1-adaptin; coated 19.8 1.5E+02 0.0052 23.6 4.9 29 172-200 55-84 (146)
8 3zy7_A AP-1 complex subunit ga 19.1 1.8E+02 0.0062 22.4 5.1 29 171-199 30-59 (122)
9 1fcq_A Hyaluronoglucosaminidas 19.0 57 0.0019 30.6 2.5 30 105-137 46-80 (350)
10 2pe4_A Hyaluronidase-1; hyalur 18.9 45 0.0016 32.0 1.8 31 104-137 46-79 (424)
No 1
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=93.24 E-value=0.086 Score=41.38 Aligned_cols=71 Identities=17% Similarity=0.359 Sum_probs=44.8
Q ss_pred CCCCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 023278 104 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV- 182 (284)
Q Consensus 104 P~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFTnG~- 182 (284)
|..|+..+|||+.. -=.++-.||.+- |.+.+.= | -.|.+. .|.=-|...|.+|. +-.|+|-|+||.
T Consensus 6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~ 72 (102)
T 2c3v_A 6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG 72 (102)
T ss_dssp --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence 34499999999933 334556666322 3465531 1 124332 24445688899984 689999999999
Q ss_pred CCCCc
Q 023278 183 EWDGP 187 (284)
Q Consensus 183 ~WDGp 187 (284)
.||-.
T Consensus 73 ~WDNN 77 (102)
T 2c3v_A 73 QWDNN 77 (102)
T ss_dssp CEECG
T ss_pred ccccC
Confidence 79954
No 2
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=91.65 E-value=0.12 Score=40.68 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=44.5
Q ss_pred CCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchh-hhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 023278 106 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR-AMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV- 182 (284)
Q Consensus 106 sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR-~M~~k~RGkad~PiY-tI~I~vPkHa~~LiFSFTnG~- 182 (284)
.|+.++|||++.+++. .-.||.+- |..+++ |= .|.+. .-|-| +..|.||. +..|+|-|+||.
T Consensus 3 ~g~~vtiyY~~g~~~v--ylHyg~~~-g~Wt~~------~~v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~ 67 (104)
T 2laa_A 3 TGNKVTIYYKKGFNSP--YIHYRPAG-GSWTAA------PGVKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN 67 (104)
T ss_dssp CCCEEEEEEECSSSSC--EEEEEETT-SCCCSS------SCEECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred CCCEEEEEEcCCCCcE--EEEEcCCC-CCCCcC------Cccccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence 4899999999755543 33555222 456653 21 23222 11567 69999996 689999999998
Q ss_pred CCCCce
Q 023278 183 EWDGPY 188 (284)
Q Consensus 183 ~WDGpY 188 (284)
.||-.-
T Consensus 68 ~WDNn~ 73 (104)
T 2laa_A 68 NWDSNN 73 (104)
T ss_dssp CEESTT
T ss_pred cCcCCC
Confidence 799653
No 3
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=33.43 E-value=7.7 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCCCCceeeeecCCC-CCccccC
Q 023278 120 KLLPNEDFGIGFNGGF-NQPFMCG 142 (284)
Q Consensus 120 ~l~PNe~fGiaFNGGF-NQPIMCG 142 (284)
.+++|+.| |.|.| +||||=|
T Consensus 37 ~v~~~~~~---f~ghFp~~Pi~PG 57 (146)
T 3d6x_A 37 NISISDHV---FMGHFPGHPIYPG 57 (146)
T ss_dssp ECCTTBTH---HHHSCTTSCCCCH
T ss_pred EcCCCCCe---ecCCCCCCCcCch
Confidence 47788877 99999 7999977
No 4
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.86 E-value=93 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=20.8
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023278 172 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 200 (284)
Q Consensus 172 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 200 (284)
+.+..+|+|-..- =--|.+|+.|||.|+=
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kL 69 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQL 69 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 6677788885442 2347899999998864
No 5
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=23.00 E-value=36 Score=26.27 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=12.2
Q ss_pred CCceeEEEecCcc
Q 023278 185 DGPYRIKFLVPRA 197 (284)
Q Consensus 185 DGpY~L~f~VP~~ 197 (284)
||.|||.+..|++
T Consensus 19 dGdYrL~itcpkK 31 (76)
T 2rp4_A 19 DGDYRLAITCPNK 31 (76)
T ss_dssp TTBEEEEEEESCH
T ss_pred CCceEEEEEeCcH
Confidence 8999999999986
No 6
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=20.07 E-value=88 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.4
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023278 172 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 200 (284)
Q Consensus 172 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 200 (284)
+.+..+|+|-..- =--|.+|+.|||.|+=
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kL 78 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQL 78 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 5667778875442 2347899999998863
No 7
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=19.76 E-value=1.5e+02 Score=23.62 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.8
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 023278 172 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 200 (284)
Q Consensus 172 ~~LiFSFTnG~~W-DGpY~L~f~VP~~~~n 200 (284)
+.+..+|+|-... =--|.+|+.|||.|+=
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kL 84 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQL 84 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEE
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEE
Confidence 6677788885442 2357899999998863
No 8
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=19.13 E-value=1.8e+02 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=21.6
Q ss_pred eeeEEEEeecCCCCC-CceeEEEecCcccc
Q 023278 171 AINLIFSFTNGVEWD-GPYRIKFLVPRAWR 199 (284)
Q Consensus 171 a~~LiFSFTnG~~WD-GpY~L~f~VP~~~~ 199 (284)
.+.+..+|+|-..-+ --+.+|..|||.|+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~k 59 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQ 59 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccE
Confidence 377888888865432 34789999999875
No 9
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=18.97 E-value=57 Score=30.57 Aligned_cols=30 Identities=40% Similarity=0.801 Sum_probs=18.2
Q ss_pred CCCCceEEEEccccCCCCCC--Cc-eeeee--cCCCCC
Q 023278 105 MSGEKLKIFYNPYAKKLLPN--ED-FGIGF--NGGFNQ 137 (284)
Q Consensus 105 ~sGe~L~lfyNp~as~l~PN--e~-fGiaF--NGGFNQ 137 (284)
-.||.++|||.| -+-|- +. =|..+ |||.=|
T Consensus 46 f~G~~itIfY~~---G~yP~~~~~~~g~~~~~NGGiPQ 80 (350)
T 1fcq_A 46 FRGEEIAILYDP---GMFPALLKDPNGNVVARNGGVPQ 80 (350)
T ss_dssp SSSSSEEEEESC---SCCCEEC-------CEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCceeecCCCCCEeecCCCcCC
Confidence 379999999998 56662 11 46666 777655
No 10
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=18.86 E-value=45 Score=31.98 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=19.8
Q ss_pred CCCCCceEEEEccccC---CCCCCCceeeeecCCCCC
Q 023278 104 PMSGEKLKIFYNPYAK---KLLPNEDFGIGFNGGFNQ 137 (284)
Q Consensus 104 P~sGe~L~lfyNp~as---~l~PNe~fGiaFNGGFNQ 137 (284)
=-.||.++|||-|.-- -+.++ |..+|||.=|
T Consensus 46 ~f~G~~itIfY~~~lG~yP~~~~~---g~~~NGGiPQ 79 (424)
T 2pe4_A 46 TFRGPDMTIFYSSQLGTYPYYTPT---GEPVFGGLPQ 79 (424)
T ss_dssp CSCCSSEEEECTTSSSCCCEECTT---SCEETTSSGG
T ss_pred ccCCCeEEEEECCCCCCCceEcCC---CCcccCCcCC
Confidence 3469999999987221 12222 5667887755
Done!