Query 023278
Match_columns 284
No_of_seqs 27 out of 29
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 04:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gf3a2 d.16.1.3 (A:218-321) S 75.4 1.1 8.2E-05 31.4 3.4 42 83-124 15-61 (104)
2 d3bmva2 b.3.1.1 (A:579-683) Cy 48.4 38 0.0028 23.4 8.0 69 106-179 2-72 (105)
3 d1fcqa_ c.1.8.9 (A:) Bee venom 37.0 8.9 0.00065 33.3 2.8 30 105-137 37-71 (321)
4 d1bhga2 b.18.1.5 (A:22-225) be 36.5 2.8 0.0002 32.0 -0.5 15 188-202 80-94 (204)
5 d2j2za1 b.1.11.1 (A:1-124) Pil 19.5 29 0.0021 24.9 2.5 33 90-122 81-123 (124)
6 d1g2914 b.40.6.3 (1:302-372) M 19.2 50 0.0036 20.8 3.4 35 87-121 27-61 (71)
7 d1yfna1 b.136.1.1 (A:4-111) St 18.7 26 0.0019 26.2 2.0 52 109-183 47-98 (108)
8 d1u2ca1 b.1.6.2 (A:58-160) Dys 17.4 20 0.0015 25.2 1.1 18 80-97 44-61 (103)
9 d1qhoa2 b.3.1.1 (A:577-686) Cy 17.4 75 0.0055 21.9 4.3 75 107-187 3-83 (110)
10 d1v43a2 b.40.6.3 (A:304-373) H 14.9 63 0.0046 20.2 3.0 35 85-119 24-58 (70)
No 1
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=75.39 E-value=1.1 Score=31.44 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=29.5
Q ss_pred cchhhccCCCceE-eEecC----CCCCCCCCceEEEEccccCCCCCC
Q 023278 83 SWAMFELGKAPVY-WKTMN----GLPPMSGEKLKIFYNPYAKKLLPN 124 (284)
Q Consensus 83 sWa~FElG~apVy-Wkt~n----GlpP~sGe~L~lfyNp~as~l~PN 124 (284)
....|..++.||| |+..+ |+|..-|..+||.+.=......|+
T Consensus 15 ~~~~~~~~~fP~fi~~~~~~~~YGfP~~~~~g~Ki~~~~~g~~~dPd 61 (104)
T d2gf3a2 15 ESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPD 61 (104)
T ss_dssp HHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTT
T ss_pred CccccccCCCCEEEEECCCCeEEecCCCCCCceEEEEecCCCccCcc
Confidence 3456677778887 77666 899999999999886333333443
No 2
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Probab=48.37 E-value=38 Score=23.43 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhh-hhh-hhCCCCCCceEEEeeeccceeeEEEEee
Q 023278 106 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAM-LRK-NRGQNDSPFYTIQICVPKHAINLIFSFT 179 (284)
Q Consensus 106 sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M-~~k-~RGkad~PiYtI~I~vPkHa~~LiFSFT 179 (284)
+|++.++-|.=.-.++.+++.-.|.- |.|-+..-+|... .++ ..+..+.|++++.|.||.. ..++|-|-
T Consensus 2 ~~~~v~V~F~v~~~~t~~Gq~v~vvG----s~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~-~~~eYKyv 72 (105)
T d3bmva2 2 TGNQICVRFVVNNASTVYGENVYLTG----NVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAG-TTIQFKFI 72 (105)
T ss_dssp SSSEEEEEEEEESCCCCTTCEEEEEE----SSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETT-CEEEEEEE
T ss_pred CCCEEEEEEEEcccccCCCCEEEEEe----CcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCC-CeEEEEEE
Confidence 46677777765445677888755553 3677777777433 333 4566678999999999985 47888874
No 3
>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=36.97 E-value=8.9 Score=33.33 Aligned_cols=30 Identities=40% Similarity=0.864 Sum_probs=19.7
Q ss_pred CCCCceEEEEccccCCCCCC--Cce-e--eeecCCCCC
Q 023278 105 MSGEKLKIFYNPYAKKLLPN--EDF-G--IGFNGGFNQ 137 (284)
Q Consensus 105 ~sGe~L~lfyNp~as~l~PN--e~f-G--iaFNGGFNQ 137 (284)
-.||.++|||.| -|-|- ++= | +.+|||.=|
T Consensus 37 f~Gq~itIFY~~---G~yP~~~~~~~~~~~~~NGGlPQ 71 (321)
T d1fcqa_ 37 FRGEEIAILYDP---GMFPALLKDPNGNVVARNGGVPQ 71 (321)
T ss_dssp SSSSSEEEEESC---SCCCEEC-------CEETTSSGG
T ss_pred ccCCeEEEEeCC---CCCcceEeCCCCceeeecCCCCC
Confidence 359999999976 66662 211 1 567887766
No 4
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.55 E-value=2.8 Score=32.00 Aligned_cols=15 Identities=20% Similarity=0.711 Sum_probs=13.6
Q ss_pred eeEEEecCcccccCC
Q 023278 188 YRIKFLVPRAWRNKP 202 (284)
Q Consensus 188 Y~L~f~VP~~~~nkP 202 (284)
||-+|.||+.|++.+
T Consensus 80 Yrr~f~vp~~~~~~~ 94 (204)
T d1bhga2 80 YEREVILPERWTQDL 94 (204)
T ss_dssp EEEEEECCTTTTSCS
T ss_pred EEEEEEEcccccccC
Confidence 999999999998765
No 5
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}
Probab=19.48 E-value=29 Score=24.85 Aligned_cols=33 Identities=30% Similarity=0.658 Sum_probs=24.7
Q ss_pred CCCceEeEecCCCCCCCCC----------ceEEEEccccCCCC
Q 023278 90 GKAPVYWKTMNGLPPMSGE----------KLKIFYNPYAKKLL 122 (284)
Q Consensus 90 G~apVyWkt~nGlpP~sGe----------~L~lfyNp~as~l~ 122 (284)
.+-.+||=.-.++||...+ .+||||-|+.=+-.
T Consensus 81 drEs~~~l~i~~IP~~~~~~~~l~i~~r~~iklFyRP~~l~~~ 123 (124)
T d2j2za1 81 DRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTR 123 (124)
T ss_dssp SSCEEEEEEEEEECCCCCCSSEEEEEEEEEEEEEEECGGGCCC
T ss_pred ceeEEEEEEEEecCCCCCCCCEEEEEEeeEEEEEECCccCCCC
Confidence 4456899999999987654 47899999875443
No 6
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=19.23 E-value=50 Score=20.76 Aligned_cols=35 Identities=6% Similarity=0.097 Sum_probs=28.5
Q ss_pred hccCCCceEeEecCCCCCCCCCceEEEEccccCCC
Q 023278 87 FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL 121 (284)
Q Consensus 87 FElG~apVyWkt~nGlpP~sGe~L~lfyNp~as~l 121 (284)
+++|..++.=++........||.+.|.+||.---|
T Consensus 27 ~~~~~~~i~~~~~~~~~~~~G~~v~l~~~~~~~hl 61 (71)
T d1g2914 27 LRVGGVTFVGSFRSESRVREGVEVDVVFDMKKIHI 61 (71)
T ss_dssp EEETTEEEEEEECTTCCCCTTCEEEEEECGGGCEE
T ss_pred EEECCEEEEEEECCCCCCCCCCEEEEEECcccEEE
Confidence 45677788888999999999999999999875443
No 7
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=18.66 E-value=26 Score=26.17 Aligned_cols=52 Identities=33% Similarity=0.483 Sum_probs=38.5
Q ss_pred ceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCCC
Q 023278 109 KLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVE 183 (284)
Q Consensus 109 ~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFTnG~~ 183 (284)
++.|=..|.|.+=.-=++=+|.|+.-| ||.|| +|.||-+|+--||+=-||.-
T Consensus 47 ~IvLNIsp~Av~~L~i~nd~IsF~aRF------~G~~~-----------------~i~vP~~AV~aIyarEnG~G 98 (108)
T d1yfna1 47 QIVLNIAPRAVGNLELANDEVRFNARF------GGIPR-----------------QVSVPLAAVLAIYARENGAG 98 (108)
T ss_dssp EEEEECSGGGCEEEEECSSEEEEEEEE------TTEEE-----------------EEEEEGGGEEEEEETTTCCE
T ss_pred eEEEEcChhhccCEEEcCCEEEEEEEE------CCeeE-----------------EEEEEHHHhheeeecccCCC
Confidence 567777777654333334479999988 46654 68999999999999998853
No 8
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.36 E-value=20 Score=25.19 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.6
Q ss_pred cCCcchhhccCCCceEeE
Q 023278 80 TRPSWAMFELGKAPVYWK 97 (284)
Q Consensus 80 ~lPsWa~FElG~apVyWk 97 (284)
.||+|..|+-...-++|.
T Consensus 44 ~LPsWl~fd~~tg~~~Gt 61 (103)
T d1u2ca1 44 ALPSWLHWDPHSHILEGL 61 (103)
T ss_dssp SCCTTEEEETTTTEEEEC
T ss_pred CCCccEEEeccCCEEEEc
Confidence 689999999888888874
No 9
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}
Probab=17.36 E-value=75 Score=21.85 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCceEEEEccccCC-CCCCCceeeeecCCCCCccccCCchhhhhh-hhh-C---CCCCCceEEEeeeccceeeEEEEeec
Q 023278 107 GEKLKIFYNPYAKK-LLPNEDFGIGFNGGFNQPFMCGGEPRAMLR-KNR-G---QNDSPFYTIQICVPKHAINLIFSFTN 180 (284)
Q Consensus 107 Ge~L~lfyNp~as~-l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~-k~R-G---kad~PiYtI~I~vPkHa~~LiFSFTn 180 (284)
|.+-++-|+=.+.. ..|++.-.|. | |.|-+..-.|....+ +.- | ..+.|++++.|.||.- ..++|-|.-
T Consensus 3 ~~~~~V~f~v~~~~~T~~Gq~v~iv--G--~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~-~~~eYKyvi 77 (110)
T d1qhoa2 3 GTQTSVVFTVKSAPPTNLGDKIYLT--G--NIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAG-KTIQFKFFI 77 (110)
T ss_dssp SSEEEEEEEEESCCCCCTTCEEEEE--E--SSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETT-CEEEEEEEE
T ss_pred CCceEEEEEEeCcccCCCCCEEEEE--e--CcHHHCCCChhhccccccccCccccccCCeEEEEEEECCC-CEEEEEEEE
Confidence 44444444433322 2345543333 3 455565666643222 211 1 3467999999999985 478888864
Q ss_pred CCCCCCc
Q 023278 181 GVEWDGP 187 (284)
Q Consensus 181 G~~WDGp 187 (284)
+++||.
T Consensus 78 -~~~~g~ 83 (110)
T d1qhoa2 78 -KRADGT 83 (110)
T ss_dssp -ECTTSC
T ss_pred -EcCCCC
Confidence 355654
No 10
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.89 E-value=63 Score=20.19 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.2
Q ss_pred hhhccCCCceEeEecCCCCCCCCCceEEEEccccC
Q 023278 85 AMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 119 (284)
Q Consensus 85 a~FElG~apVyWkt~nGlpP~sGe~L~lfyNp~as 119 (284)
..+++|...+-=++....++..|+.+.|.++|..-
T Consensus 24 v~~~~~~~~i~~~~~~~~~~~~g~~i~l~~d~~~~ 58 (70)
T d1v43a2 24 LHVKFGDELVKVKLPGHIPIEPGREVKVIMDLDMI 58 (70)
T ss_dssp EEEEETTEEEEEEEESCCCCCTTCEEEEEEEGGGC
T ss_pred EEEEECCEEEEEEECCCCCCCCCCEEEEEECcccE
Confidence 34677888888889999999999999999988654
Done!