BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023279
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 220 bits (560), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/175 (61%), Positives = 129/175 (73%), Gaps = 9/175 (5%)
Query: 92 RAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMD-TVTDQFPDQVLVHFF 150
R++ + VP +GV S+CG+RPEMED+V+ IP FLQ+ + L+D VT+ F + HFF
Sbjct: 3 RSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFF 62
Query: 151 GVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIG 210
GVYDGHGG QVANYC ERMHLAL EE+V K DG +WQE+WKKA NSF++VDSEI
Sbjct: 63 GVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEI- 121
Query: 211 GALGGEPV--APETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
E V APET GST+VVA++ PT I VANCGDSRAVLCRGK P+ LSVDHK
Sbjct: 122 -----ETVAHAPETVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHK 171
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 125/172 (72%), Gaps = 9/172 (5%)
Query: 92 RAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFG 151
R++ + VP +G S+CG+RPEMEDAV+ IP FLQ + ++D +F Q HFFG
Sbjct: 3 RSLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDG---RFDPQSAAHFFG 59
Query: 152 VYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGG 211
VYDGHGG QVANYC ERMHLALAEE+ K L DG +W E+WKKA NSFL+VDSEI
Sbjct: 60 VYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI-- 117
Query: 212 ALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
E VAPET GST+VVA++ P+ I VANCGDSRAVLCRGK +PLSVDHK
Sbjct: 118 ----ESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 165
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 104/171 (60%), Positives = 124/171 (72%), Gaps = 9/171 (5%)
Query: 93 AVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGV 152
++ + VP +G S+CG+RPEMEDAV+ IP FLQ + ++D +F Q HFFGV
Sbjct: 1 SLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDG---RFDPQSAAHFFGV 57
Query: 153 YDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGA 212
YDGHGG QVANYC ERMHLALAEE+ K L DG +W E+WKKA NSFL+VDSEI
Sbjct: 58 YDGHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEI--- 114
Query: 213 LGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
E VAPET GST+VVA++ P+ I VANCGDSRAVLCRGK +PLSVDHK
Sbjct: 115 ---ESVAPETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 162
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 213 bits (542), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 104/164 (63%), Positives = 121/164 (73%), Gaps = 9/164 (5%)
Query: 100 VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGC 159
VP +G S+CG+RPEMEDAV+ IP FLQ + ++D +F Q HFFGVYDGHGG
Sbjct: 23 VPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDG---RFDPQSAAHFFGVYDGHGGS 79
Query: 160 QVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVA 219
QVANYC ERMHLALAEE+ K L DG +W E+WKKA NSFL+VDSEI E VA
Sbjct: 80 QVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI------ESVA 133
Query: 220 PETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
PET GST+VVA++ P+ I VANCGDSRAVLCRGK +PLSVDHK
Sbjct: 134 PETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 177
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 86 QHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD-- 143
H R+V +LD +P WG S+ G R EMEDA AV P FL++ +LM P
Sbjct: 2 NHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLT 61
Query: 144 QVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQD---GGSWQEQWKKAFAN 200
+ HFFGVYDGHGG +VA+YC +R+H ALAEE+ K L G Q QW K F +
Sbjct: 62 HLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWDKVFTS 121
Query: 201 SFLKVDSEIGGALGG----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLC 250
FL VD EI G +G E VA ET GSTAVVA++ + I+V+NCGDSRAVL
Sbjct: 122 CFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLF 181
Query: 251 RGKVPVPLSVDHK 263
RGK +PLSVDHK
Sbjct: 182 RGKEAMPLSVDHK 194
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 86 QHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD-- 143
H R+V +LD +P WG S+ G R EMEDA AV P FL++ +LM P
Sbjct: 5 NHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLT 64
Query: 144 QVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARL---QDGGSWQEQWKKAFAN 200
+ HFFGVYDGHGG +VA+YC +R+H ALAEE+ K L G Q QW K F +
Sbjct: 65 HLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTS 124
Query: 201 SFLKVDSEIGGALGG----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLC 250
FL VD EI G +G E VA ET GSTAVVA++ + I+V+NCGDSRAVL
Sbjct: 125 CFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLF 184
Query: 251 RGKVPVPLSVDHK 263
RGK +PLSVDHK
Sbjct: 185 RGKEAMPLSVDHK 197
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 86 QHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD-- 143
H R+V +LD +P WG S+ G R EMEDA AV P FL++ +LM P
Sbjct: 3 NHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLT 62
Query: 144 QVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARL---QDGGSWQEQWKKAFAN 200
+ HFFGVYDGHGG +VA+YC +R+H ALAEE+ K L G Q QW K F +
Sbjct: 63 HLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTS 122
Query: 201 SFLKVDSEIGGALGG----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLC 250
FL VD EI G +G E VA ET GSTAVVA++ + I+V+NCGDSRAVL
Sbjct: 123 CFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLF 182
Query: 251 RGKVPVPLSVDHK 263
RGK +PLSVDHK
Sbjct: 183 RGKEAMPLSVDHK 195
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 116/193 (60%), Gaps = 15/193 (7%)
Query: 86 QHEETKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD-- 143
H R+V +LD +P WG S+ G R EMEDA AV P FL++ +LM P
Sbjct: 12 NHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLT 71
Query: 144 QVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARL---QDGGSWQEQWKKAFAN 200
+ HFFGVYDGHGG +VA+YC +R+H ALAEE+ K L G Q QW K F +
Sbjct: 72 HLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTS 131
Query: 201 SFLKVDSEIGGALGG----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLC 250
FL VD EI G +G E VA ET GSTAVVA++ + I+V+NCGDSRAVL
Sbjct: 132 CFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLF 191
Query: 251 RGKVPVPLSVDHK 263
RGK +PLSVDHK
Sbjct: 192 RGKEAMPLSVDHK 204
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 115/187 (61%), Gaps = 15/187 (8%)
Query: 92 RAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD--QVLVHF 149
R+V +LD +P WG S+ G R EMEDA AV P FL++ +LM P + HF
Sbjct: 5 RSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHF 64
Query: 150 FGVYDGHGGCQVANYCCERMHLALAEELVTAKARL---QDGGSWQEQWKKAFANSFLKVD 206
FGVYDGHGG +VA+YC +R+H ALAEE+ K L G Q QW K F + FL VD
Sbjct: 65 FGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVD 124
Query: 207 SEIGGALGG----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPV 256
EI G +G E VA ET GSTAVVA++ + I+V+NCGDSRAVL RGK +
Sbjct: 125 GEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAM 184
Query: 257 PLSVDHK 263
PLSVDHK
Sbjct: 185 PLSVDHK 191
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 109/179 (60%), Gaps = 15/179 (8%)
Query: 100 VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPD--QVLVHFFGVYDGHG 157
+P WG S+ G R EMEDA AV P FL++ +LM P + HFFGVYDGHG
Sbjct: 2 IPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHG 61
Query: 158 GCQVANYCCERMHLALAEELVTAKARL---QDGGSWQEQWKKAFANSFLKVDSEIGGALG 214
G +VA+YC +R+H ALAEE+ K L G Q QW K F + FL VD EI G +G
Sbjct: 62 GHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIG 121
Query: 215 G----------EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
E VA ET GSTAVVA++ + I+V+NCGDSRAVL RGK +PLSVDHK
Sbjct: 122 RAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHK 180
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 102 RWGVNSVCGKRPEMEDA---VAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGG 158
R+G++S+ G R EMEDA V +P+ L+ + FF VYDGH G
Sbjct: 23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLESWS------------------FFAVYDGHAG 64
Query: 159 CQVANYCCERM--HLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGE 216
QVA YCCE + H+ ++ + G E K FL++D + + +
Sbjct: 65 SQVAKYCCEHLLDHITNNQDFKGSA-----GAPSVENVKNGIRTGFLEIDEHMR-VMSEK 118
Query: 217 PVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
+ +GSTAV +ISP NCGDSR +LCR + + DHK
Sbjct: 119 KHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHK 165
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 102 RWGVNSVCGKRPEMEDA---VAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGG 158
R+G++S+ G R EMEDA V +P+ L+ + FF VYDGH G
Sbjct: 23 RYGLSSMQGWRVEMEDAHTAVIGLPSGLESWS------------------FFAVYDGHAG 64
Query: 159 CQVANYCCERM--HLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGE 216
QVA YCCE + H+ ++ + G E K FL++D + + +
Sbjct: 65 SQVAKYCCEHLLDHITNNQDFKGSA-----GAPSVENVKNGIRTGFLEIDEHMR-VMSEK 118
Query: 217 PVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHK 263
+ +GSTAV +ISP NCGDSR +LCR + + DHK
Sbjct: 119 KHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHK 165
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 82/181 (45%), Gaps = 36/181 (19%)
Query: 102 RWGVNSVCGKRPEMEDA---VAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGG 158
R+G++S+ G R EMEDA V IP L+ + FF VYDGH G
Sbjct: 25 RYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWS------------------FFAVYDGHAG 66
Query: 159 CQVANYCCERM--HLALAEELVTAKARLQDGGSWQ---EQWKKAFANSFLKVDSEIGGAL 213
+VANYC + H+ E+ +A + G + + E K FLK+D E
Sbjct: 67 SRVANYCSTHLLEHITTNEDF---RAAGKSGSALELSVENVKNGIRTGFLKID-EYMRNF 122
Query: 214 GGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPP 273
+ +GSTAV +ISP I NCGDSRAVL R + DHK P P
Sbjct: 123 SDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHK------PCNP 176
Query: 274 R 274
R
Sbjct: 177 R 177
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 25/136 (18%)
Query: 141 FPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFAN 200
F DQ FF VYDGHGG +VA YC +HL + V A R ++++KA
Sbjct: 47 FDDQC--SFFAVYDGHGGAEVAQYC--SLHLPTFLKTVEAYGR--------KEFEKALKE 94
Query: 201 SFLKVDSEI-------------GGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRA 247
+FL D+ + G + G + + +G TAVVA++ + VAN GDSR
Sbjct: 95 AFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRC 154
Query: 248 VLCRGKVPVPLSVDHK 263
V+CR + +S DHK
Sbjct: 155 VVCRNGKALEMSFDHK 170
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 105/266 (39%), Gaps = 63/266 (23%)
Query: 29 VNPDSKEEDSMSLVDSSGPDEFLTAVNRRSVADDVELEIFAERGKKESD----------- 77
V P+ K E ++L S G E + + + + +E FA+R KE D
Sbjct: 21 VKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRL-MEAFAKRQGKEMDSLRFLYDGIRI 79
Query: 78 -----------ESNPMIPEQHEETKRAVIQLDQ---VPRW-----GVNSVCGKRPEMEDA 118
E N +I E+ + +P+ G S GKR E ED
Sbjct: 80 QADQAPEDLDMEDNDIIEAHREQIGGENLYFQAGKPIPKISLENVGCASQIGKRKENEDR 139
Query: 119 VAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELV 178
Q D+VL +F VYDGHGG A++C M + + L
Sbjct: 140 FDFA-----------------QLTDEVL--YFAVYDGHGGPAAADFCHTHMEKCIMDLLP 180
Query: 179 TAKARLQDGGSWQEQWKKAFANSFLKVDSEIGG-ALGGEPVAPETAGSTAVVAIISPTL- 236
K + +FL++D A T+G+TA VA++ +
Sbjct: 181 KEK-----------NLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIE 229
Query: 237 IIVANCGDSRAVLCRGKVPVPLSVDH 262
++VA+ GDSRA+LCR P+ L++DH
Sbjct: 230 LVVASVGDSRAILCRKGKPMKLTIDH 255
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 95 IQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYD 154
I L+ V G S GKR E ED Q D+VL +F VYD
Sbjct: 5 ISLENV---GCASQIGKRKENEDRFDFA-----------------QLTDEVL--YFAVYD 42
Query: 155 GHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGG-AL 213
GHGG A++C M + + L K + +FL++D A
Sbjct: 43 GHGGPAAADFCHTHMEKCIMDLLPKEK-----------NLETLLTLAFLEIDKAFSSHAR 91
Query: 214 GGEPVAPETAGSTAVVAIISPTL-IIVANCGDSRAVLCRGKVPVPLSVDH 262
T+G+TA VA++ + ++VA+ GDSRA+LCR P+ L++DH
Sbjct: 92 LSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDH 141
>pdb|2POP|A Chain A, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|C Chain C, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 353
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLK-VDS 207
+GV++G+ G +V N+ +R+ L + A+ D Q SFL+ +D
Sbjct: 66 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 125
Query: 208 EIG--GALGGEPVAPE----TAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVP----VP 257
+ +L E + + G+ AVVA++ + VAN G +RA+LC+ V
Sbjct: 126 ALAEKASLQLERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQ 185
Query: 258 LSVDH 262
L+VDH
Sbjct: 186 LNVDH 190
>pdb|2POM|A Chain A, Tab1 With Manganese Ion
Length = 372
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLK-VDS 207
+GV++G+ G +V N+ +R+ L + A+ D Q SFL+ +D
Sbjct: 66 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 125
Query: 208 EIGGALGGEPVAPE-------------------------TAGSTAVVAIISPTLIIVANC 242
+ + PE + G+ AVVA++ + VAN
Sbjct: 126 ALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANV 185
Query: 243 GDSRAVLCRGKVP----VPLSVDH 262
G +RA+LC+ V L+VDH
Sbjct: 186 GTNRALLCKSTVDGLQVTQLNVDH 209
>pdb|2J4O|A Chain A, Structure Of Tab1
Length = 401
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLK-VDS 207
+GV++G+ G +V N+ +R+ L + A+ D Q SFL+ +D
Sbjct: 64 LYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDD 123
Query: 208 EIGGALGGEPVAPE-------------------------TAGSTAVVAIISPTLIIVANC 242
+ + PE + G+ AVVA++ + VAN
Sbjct: 124 ALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANV 183
Query: 243 GDSRAVLCRGKVP----VPLSVDH 262
G +RA+LC+ V L+VDH
Sbjct: 184 GTNRALLCKSTVDGLQVTQLNVDH 207
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 188 GSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRA 247
G Q + + F N K+DS + AL + GS+AV+A+I + + + N G+ RA
Sbjct: 127 GMNQYEISQQFENVLQKLDS-LNNAL--------SVGSSAVLALIHRSHLYLGNIGNCRA 177
Query: 248 VLCRGK-----VPVPLSVDHKV 264
+LC+ LSVDH +
Sbjct: 178 LLCKTDEHDTLTVTQLSVDHNL 199
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 57/158 (36%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALA------EELVTAKARLQDGGS------------- 189
GV+DGH GC + ER+ +A E L+ + ++ G +
Sbjct: 68 LLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPND 127
Query: 190 -----------------WQE------------QWKKAFANSFLKVDSEIG-GALGGEP-- 217
WQE K+A N+F ++D++I A G+P
Sbjct: 128 YFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNS 187
Query: 218 ------VAPETAGSTAVVAIISPTLIIVANCGDSRAVL 249
+ +G+TA VA + + VAN GDSRA+L
Sbjct: 188 FLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAML 225
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 57/158 (36%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALA------EELVTAKARLQDGGS------------- 189
GV+DGH GC + ER+ +A E L+ + ++ G +
Sbjct: 68 LLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPND 127
Query: 190 -----------------WQE------------QWKKAFANSFLKVDSEIG-GALGGEP-- 217
WQE K+A N+F ++D++I A G+P
Sbjct: 128 YFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNS 187
Query: 218 ------VAPETAGSTAVVAIISPTLIIVANCGDSRAVL 249
+ +G+TA VA + + VAN GDSRA+L
Sbjct: 188 FLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAML 225
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 42/139 (30%)
Query: 100 VPRWGVNSVC----GKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDG 155
V W +V G+RP EDA+ L+ P+ V V+DG
Sbjct: 8 VNEWYTTTVAATXLGRRPTDEDAI-------------LVSAPATSRPN---VRIKAVFDG 51
Query: 156 HGGCQVANYCCERM--HLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGAL 213
H G + YC + HL E A+ + + L +D+EI L
Sbjct: 52 HAGEATSQYCAKHAAKHLGKLSEFTFAEVK----------------KACLSLDAEIIRKL 95
Query: 214 GGEPVAPETAGSTAVVAII 232
G + V AGST ++ I
Sbjct: 96 GPKHV----AGSTGIIVAI 110
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 149 FFGVYDGHGGCQVANYCCERMHLALAEELVTAKA--------RLQDGGSWQEQWKKAFAN 200
FFG+ HG ++A E + ALA+ + A L GG+ E W++ A+
Sbjct: 349 FFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLAD 408
Query: 201 -SFLKVDSEIGGALG 214
S ++D GG +G
Sbjct: 409 ISGQQLDYRTGGDVG 423
>pdb|1RGY|A Chain A, Citrobacter Freundii Gn346 Class C Beta-Lactamase
Complexed With Transition-State Analog Of Cefotaxime
Length = 360
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 133 LMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQE 192
L D VT +P+ + G+ H +A Y + L + +++ A L+ +WQ
Sbjct: 84 LSDPVTKYWPELTGKQWRGISLLH----LATYTAGGLPLQIPDDITDKAALLRFYQNWQP 139
Query: 193 QW----KKAFANS 201
QW K+ +ANS
Sbjct: 140 QWTPGAKRLYANS 152
>pdb|3EB7|A Chain A, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
pdb|3EB7|B Chain B, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
pdb|3EB7|C Chain C, Crystal Structure Of Insecticidal Delta-Endotoxin Cry8ea1
From Bacillus Thuringiensis At 2.2 Angstroms Resolution
Length = 589
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 207 SEIGGALGGEPVAPETAGSTAVVAI 231
+E+G LGG+P++ ++GST V+ +
Sbjct: 465 NEVGHYLGGDPISFNSSGSTGVIRL 489
>pdb|1FR1|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR1|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
pdb|1FR6|B Chain B, Refined Crystal Structure Of Beta-Lactamase From
Citrobacter Freundii Indicates A Mechanism For
Beta-Lactam Hydrolysis
Length = 361
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 133 LMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQE 192
L D VT +P+ + G+ H +A Y + L + +++ A L+ +WQ
Sbjct: 85 LSDPVTQYWPELTGKQWQGISLLH----LATYTAGGLPLQVPDDVTDKAALLRFYQNWQP 140
Query: 193 QW----KKAFANS 201
QW K+ +ANS
Sbjct: 141 QWAPGAKRLYANS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,710,352
Number of Sequences: 62578
Number of extensions: 356250
Number of successful extensions: 840
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 31
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)