Query 023280
Match_columns 284
No_of_seqs 233 out of 1226
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 2.6E-78 5.6E-83 567.0 23.8 268 17-284 67-336 (347)
2 PLN03019 carbonic anhydrase 100.0 1.3E-73 2.9E-78 532.8 24.3 258 26-284 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 5.5E-67 1.2E-71 478.7 23.4 255 28-283 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 1.7E-63 3.7E-68 461.4 20.6 242 37-280 39-283 (301)
5 cd00884 beta_CA_cladeB Carboni 100.0 7.1E-54 1.5E-58 377.2 16.2 189 83-272 1-190 (190)
6 PLN02154 carbonic anhydrase 100.0 2.8E-53 6E-58 391.2 20.5 206 71-277 70-275 (290)
7 PRK10437 carbonic anhydrase; P 100.0 1.8E-53 3.8E-58 381.6 18.5 196 76-280 3-199 (220)
8 cd00883 beta_CA_cladeA Carboni 100.0 9.7E-53 2.1E-57 367.7 15.9 180 84-272 1-182 (182)
9 COG0288 CynT Carbonic anhydras 100.0 6.5E-52 1.4E-56 369.0 18.1 199 75-280 2-203 (207)
10 PRK15219 carbonic anhydrase; P 100.0 1E-51 2.2E-56 375.7 18.8 190 70-272 50-244 (245)
11 KOG1578 Predicted carbonic anh 100.0 3E-52 6.4E-57 377.6 12.7 246 18-275 15-260 (276)
12 cd03378 beta_CA_cladeC Carboni 100.0 2.1E-47 4.5E-52 325.7 16.7 150 73-272 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.3E-43 2.8E-48 300.1 12.2 152 110-269 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 6.6E-42 1.4E-46 280.4 14.3 119 106-272 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 5.7E-39 1.2E-43 270.4 13.6 141 106-271 1-141 (142)
16 KOG1578 Predicted carbonic anh 98.4 9E-09 2E-13 94.5 -5.5 188 80-272 3-249 (276)
17 TIGR01838 PHA_synth_I poly(R)- 66.0 52 0.0011 33.8 10.2 150 27-181 60-274 (532)
18 PF10070 DUF2309: Uncharacteri 57.8 24 0.00052 38.0 6.3 39 238-276 539-583 (788)
19 COG1254 AcyP Acylphosphatases 57.2 8.9 0.00019 30.2 2.3 19 254-272 29-47 (92)
20 TIGR02742 TrbC_Ftype type-F co 44.7 41 0.00088 28.1 4.5 55 93-166 58-112 (130)
21 PRK11181 23S rRNA (guanosine-2 43.9 1.1E+02 0.0025 27.8 7.7 72 95-179 54-133 (244)
22 PF00355 Rieske: Rieske [2Fe-2 34.9 14 0.0003 28.1 0.2 14 257-270 66-79 (97)
23 PF00009 GTP_EFTU: Elongation 33.8 25 0.00055 29.9 1.7 14 167-180 3-16 (188)
24 PF12503 CMV_1a_C: Cucumber mo 32.0 18 0.00039 28.0 0.4 14 1-14 30-43 (85)
25 PF04019 DUF359: Protein of un 31.9 1.6E+02 0.0035 24.2 6.1 76 102-185 6-81 (121)
26 PRK14066 exodeoxyribonuclease 29.9 95 0.0021 23.4 4.0 28 28-55 1-30 (75)
27 PRK11440 putative hydrolase; P 29.9 1E+02 0.0022 26.4 4.8 47 126-182 90-136 (188)
28 cd01891 TypA_BipA TypA (tyrosi 29.6 35 0.00075 29.1 1.8 13 167-179 2-14 (194)
29 cd03528 Rieske_RO_ferredoxin R 29.3 21 0.00046 27.1 0.4 15 256-270 61-75 (98)
30 PRK14432 acylphosphatase; Prov 28.7 42 0.00091 26.2 2.0 20 254-273 27-46 (93)
31 PF08184 Cuticle_2: Cuticle pr 28.6 28 0.00061 24.3 0.8 13 258-270 7-19 (59)
32 PF00561 Abhydrolase_1: alpha/ 28.3 53 0.0012 27.4 2.8 31 152-183 28-58 (230)
33 cd03478 Rieske_AIFL_N AIFL (ap 27.9 20 0.00043 27.3 0.0 15 256-270 60-74 (95)
34 COG1116 TauB ABC-type nitrate/ 26.8 39 0.00084 31.4 1.7 15 166-180 28-42 (248)
35 PRK14440 acylphosphatase; Prov 26.4 52 0.0011 25.5 2.1 20 253-272 27-46 (90)
36 PF05952 ComX: Bacillus compet 26.4 65 0.0014 23.2 2.4 25 236-260 5-29 (57)
37 PRK14430 acylphosphatase; Prov 26.4 50 0.0011 25.7 2.0 19 254-272 29-47 (92)
38 PRK14423 acylphosphatase; Prov 25.9 61 0.0013 25.1 2.4 20 253-272 29-48 (92)
39 PRK14445 acylphosphatase; Prov 25.3 65 0.0014 24.9 2.5 20 253-272 28-47 (91)
40 cd01890 LepA LepA subfamily. 25.2 41 0.00088 27.7 1.4 12 168-179 1-12 (179)
41 TIGR02377 MocE_fam_FeS Rieske 24.3 31 0.00067 26.8 0.5 14 256-269 63-76 (101)
42 KOG0025 Zn2+-binding dehydroge 24.1 1.2E+02 0.0025 29.4 4.3 42 123-175 153-194 (354)
43 TIGR00186 rRNA_methyl_3 rRNA m 24.1 4.5E+02 0.0097 23.7 8.1 70 95-177 49-126 (237)
44 cd03548 Rieske_RO_Alpha_OMO_CA 24.0 42 0.00091 27.6 1.3 17 256-272 77-93 (136)
45 PF01707 Peptidase_C9: Peptida 24.0 36 0.00079 30.4 0.9 32 241-278 142-173 (202)
46 KOG2781 U3 small nucleolar rib 23.2 2.3E+02 0.0049 26.6 5.9 67 103-179 78-144 (290)
47 PRK14429 acylphosphatase; Prov 23.2 69 0.0015 24.7 2.3 19 254-272 27-45 (90)
48 PF01764 Lipase_3: Lipase (cla 23.1 98 0.0021 24.5 3.3 31 154-184 50-80 (140)
49 TIGR02378 nirD_assim_sml nitri 22.8 32 0.0007 26.7 0.3 14 256-269 68-81 (105)
50 PRK09511 nirD nitrite reductas 22.7 28 0.00061 27.7 -0.0 14 256-269 71-84 (108)
51 PRK14448 acylphosphatase; Prov 22.7 63 0.0014 24.9 2.0 19 254-272 27-45 (90)
52 cd04160 Arfrp1 Arfrp1 subfamil 22.3 48 0.001 26.9 1.3 12 169-180 1-12 (167)
53 PF10500 SR-25: Nuclear RNA-sp 22.2 35 0.00076 31.1 0.5 44 236-280 150-194 (225)
54 cd04321 ScAspRS_mt_like_N ScAs 22.1 1.2E+02 0.0027 22.7 3.4 24 254-277 1-26 (86)
55 cd03529 Rieske_NirD Assimilato 22.0 32 0.00069 26.7 0.2 13 257-269 68-80 (103)
56 PRK14451 acylphosphatase; Prov 21.6 70 0.0015 24.7 2.0 19 254-272 28-46 (89)
57 PRK14441 acylphosphatase; Prov 21.5 90 0.002 24.2 2.6 20 253-272 29-48 (93)
58 cd04167 Snu114p Snu114p subfam 21.5 53 0.0011 28.6 1.5 13 168-180 1-13 (213)
59 COG2146 {NirD} Ferredoxin subu 21.3 39 0.00085 26.9 0.6 14 256-269 67-80 (106)
60 cd03473 Rieske_CMP_Neu5Ac_hydr 21.1 35 0.00077 27.6 0.3 15 256-270 71-85 (107)
61 PRK14425 acylphosphatase; Prov 20.6 82 0.0018 24.5 2.2 19 254-272 31-49 (94)
62 PRK14426 acylphosphatase; Prov 20.5 80 0.0017 24.4 2.2 19 254-272 29-47 (92)
63 cd01878 HflX HflX subfamily. 20.5 67 0.0015 27.4 1.9 16 165-180 39-54 (204)
64 cd04169 RF3 RF3 subfamily. Pe 20.1 66 0.0014 29.6 1.9 14 167-180 2-15 (267)
65 cd03474 Rieske_T4moC Toluene-4 20.1 42 0.00091 26.1 0.5 14 256-269 62-75 (108)
66 PRK14436 acylphosphatase; Prov 20.0 88 0.0019 24.2 2.3 19 254-272 29-47 (91)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=2.6e-78 Score=566.97 Aligned_cols=268 Identities=78% Similarity=1.239 Sum_probs=248.0
Q ss_pred ccccCchhHHHhhhhhHHHHHHHHHHHHhhhcCchhhHhHhHHHHHHHhcCC--CCCChHHHHHHHHHHHHHHHhhhccC
Q 023280 17 ADFVDKFLREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEK 94 (284)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~p~~~l~~Ll~GN~~F~~~~~~~ 94 (284)
+|||||+|++||+++|||+||++|+|||+||++|+.+|++||+++|++|++. ..+.+++++++|++||++|+++.+.+
T Consensus 67 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~ 146 (347)
T PLN03014 67 APIIAPYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYET 146 (347)
T ss_pred CcccCchhHhhhchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 5999999999999999999999999999999999999999999999999963 23678999999999999999999999
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEec
Q 023280 95 NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIG 174 (284)
Q Consensus 95 ~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~G 174 (284)
++++|+++++||+|+++||+||||||+|+.+||++|||+||+||+||+|+++|...|++++++|||||.+|+|++|||||
T Consensus 147 ~~~~~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~G 226 (347)
T PLN03014 147 NPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIG 226 (347)
T ss_pred CHHHHHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999987655667889999999999999999999
Q ss_pred cCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCc
Q 023280 175 HSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKT 254 (284)
Q Consensus 175 Hs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~ 254 (284)
||+||||+|+++...++....++|++|+..+.|++.++..+.+..++.+++..|+++||++||++|++||+|++++++|+
T Consensus 227 Hs~CGaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~ 306 (347)
T PLN03014 227 HSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGT 306 (347)
T ss_pred CCCchHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCC
Confidence 99999999998765445455789999999999998876665555566777777889999999999999999999999999
Q ss_pred eEEEEEEEEccCCeEEEEeccCCCCCCCCC
Q 023280 255 LALKGGYYDFVNGSFELWGLDFSLSPPLSV 284 (284)
Q Consensus 255 L~V~G~~YDi~tG~v~~~~~~~~~~~~~~~ 284 (284)
|.||||+||+.||+|++|+.++++||+.++
T Consensus 307 L~I~G~~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 307 LALKGGYYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred cEEEEEEEECCCceEEEeccccccCCcccc
Confidence 999999999999999999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.3e-73 Score=532.76 Aligned_cols=258 Identities=79% Similarity=1.259 Sum_probs=234.6
Q ss_pred HHhhhhhHHHHHHHHHHHHhhhcCchhhHhHhHHHHHHHhcCC--CCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 023280 26 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTP--SDTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 103 (284)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La 103 (284)
++|+++|||+||++|+|||+||++|+++|++||+++|++|++. ..+++++++++|++||++|+.+.+.++|++|++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 4599999999999999999999999999999999999999963 34678999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023280 104 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 183 (284)
Q Consensus 104 ~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a 183 (284)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...++++++||||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999988766778999999999999999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEE
Q 023280 184 LMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYD 263 (284)
Q Consensus 184 ~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YD 263 (284)
+++...++....++|.+|+..+.|++.++....+...+.+++..+++ ||+.||+||++||+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98765555555689999999999998766544343445555555665 99999999999999999999999999999999
Q ss_pred ccCCeEEEEeccCCCCCCCCC
Q 023280 264 FVNGSFELWGLDFSLSPPLSV 284 (284)
Q Consensus 264 i~tG~v~~~~~~~~~~~~~~~ 284 (284)
+.||+|++|+.++++||++|+
T Consensus 310 l~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 310 FVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCCceEEEEccccCcCCCCcC
Confidence 999999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=5.5e-67 Score=478.68 Aligned_cols=255 Identities=62% Similarity=1.057 Sum_probs=228.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCchhhHhHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 023280 28 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 107 (284)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~ 107 (284)
||++||+++|.+|.+|||.++.++++++++++.++++|++.. .+|.+++++|++||+||+.+++.+++++|++++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 899999999999999999999999999999999999999975 7799999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccc
Q 023280 108 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 187 (284)
Q Consensus 108 P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~ 187 (284)
|+++|||||||||+|+.|||.+|||+||+||+||+|+++|...++++++|||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876445678899999999999999999999999999998864
Q ss_pred ccCC-CCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEccC
Q 023280 188 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 266 (284)
Q Consensus 188 ~~~g-~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~t 266 (284)
.+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|+|.||||+||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 122468999999888887665544444445555667888999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCC
Q 023280 267 GSFELWGLDFSLSPPLS 283 (284)
Q Consensus 267 G~v~~~~~~~~~~~~~~ 283 (284)
|+|++++++++.+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999999998753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.7e-63 Score=461.39 Aligned_cols=242 Identities=41% Similarity=0.764 Sum_probs=213.1
Q ss_pred HHHHHHHHh-hhcCchhhHhHhHHHHHHHhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEE
Q 023280 37 IEALKKLLK-EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVF 113 (284)
Q Consensus 37 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lvi 113 (284)
..+|..-++ +..+|+.+|++|++++|+||++.. ...|++++++|++||.+|+..++.++|++|++|++||+|+++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI 118 (301)
T PLN03006 39 QLRIPASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVI 118 (301)
T ss_pred EecccccccccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEE
Confidence 345544444 556899999999999999999754 34589999999999999999999999999999999999999999
Q ss_pred eecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCC
Q 023280 114 ACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNN 193 (284)
Q Consensus 114 tCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~ 193 (284)
+||||||+|+.|||++|||+|||||+||+|+|++... .++.+||||||.+|+|++|||||||+||||+|+++..+.+ .
T Consensus 119 ~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~ 196 (301)
T PLN03006 119 ACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-D 196 (301)
T ss_pred EeccCCCCHHHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-C
Confidence 9999999999999999999999999999999987543 4688999999999999999999999999999998765444 3
Q ss_pred CchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEccCCeEEEEe
Q 023280 194 STDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWG 273 (284)
Q Consensus 194 ~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~~ 273 (284)
..++|+.|+..+.|++.++........+++++..|+++||+.|++||++||+|++++++|+|.||||+||+.||+|+.|+
T Consensus 197 ~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~ 276 (301)
T PLN03006 197 SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWT 276 (301)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEec
Confidence 56799999998888876665433334566777889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 023280 274 LDFSLSP 280 (284)
Q Consensus 274 ~~~~~~~ 280 (284)
+++++|.
T Consensus 277 ~~~~~~~ 283 (301)
T PLN03006 277 VDYAASR 283 (301)
T ss_pred ccccccc
Confidence 9998875
No 5
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.1e-54 Score=377.21 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=165.1
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCc-cchhhHHHHHHH
Q 023280 83 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 161 (284)
Q Consensus 83 GN~~F~~~~~~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~-~~~~~~asLEyA 161 (284)
||++|++..+..++++|++|+.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++++.. .+++++++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987532 245688999999
Q ss_pred HHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhh
Q 023280 162 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 241 (284)
Q Consensus 162 v~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 241 (284)
|.+|+|++|||||||+||||+|+++... +....+++..|+..+.|+........+..+..+..+.+++.||..|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886432 123456899999998888876654433334445566788999999999999
Q ss_pred cChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 023280 242 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 242 ~~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~ 272 (284)
++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999764
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.8e-53 Score=391.17 Aligned_cols=206 Identities=41% Similarity=0.749 Sum_probs=177.1
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCcc
Q 023280 71 TKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTK 150 (284)
Q Consensus 71 ~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~ 150 (284)
.+..+.|++|++||++|+..++..++++|+.|+.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++..
T Consensus 70 ~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g- 148 (290)
T PLN02154 70 ETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG- 148 (290)
T ss_pred chhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-
Confidence 3446789999999999999999999999999999999999999999999999999999999999999999999997542
Q ss_pred chhhHHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHH
Q 023280 151 YAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEK 230 (284)
Q Consensus 151 ~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~ 230 (284)
..++++||||||.+|+|++|||||||+||||+|+++.........++++.|+..+.+++.+.....+...+++.+..+++
T Consensus 149 ~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~ 228 (290)
T PLN02154 149 PTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228 (290)
T ss_pred ccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 24688999999999999999999999999999998643222234578999998766665433222222344556667888
Q ss_pred HHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCC
Q 023280 231 EAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 277 (284)
Q Consensus 231 ~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~~~~~~ 277 (284)
+||+.|++||++||+|++++++|+|+||||+||+.||+|+.|+.+.+
T Consensus 229 ~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 229 ESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 99999999999999999999999999999999999999999998775
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.8e-53 Score=381.63 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhH
Q 023280 76 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 155 (284)
Q Consensus 76 ~l~~Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~ 155 (284)
.+++|++||++|++..+..+|++|+.++++|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. +++
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4789999999999998888999999999999999999999999999999999999999999999999998764 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHH
Q 023280 156 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNV 235 (284)
Q Consensus 156 asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~ 235 (284)
++|||||.+|+|++|||||||+||+|+|+++.. ..+++..|+..+.|+...........+..+.+..++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998642 236899999998888765443333334445667788999999
Q ss_pred HHHHhhcChhHHhhhhCC-ceEEEEEEEEccCCeEEEEeccCCCCC
Q 023280 236 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLSP 280 (284)
Q Consensus 236 qv~~L~~~p~v~~~v~~g-~L~V~G~~YDi~tG~v~~~~~~~~~~~ 280 (284)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++......+
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 999999999999999999 699999999999999999887665443
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.7e-53 Score=367.69 Aligned_cols=180 Identities=31% Similarity=0.502 Sum_probs=156.9
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHH
Q 023280 84 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 163 (284)
Q Consensus 84 N~~F~~~~~~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~ 163 (284)
|++|++..+..+|++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++.+. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 47899999999
Q ss_pred hcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCC-CcccccchHHHHHHHHHHHHhhc
Q 023280 164 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLT 242 (284)
Q Consensus 164 ~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~ 242 (284)
+|||++|||||||+|||++|+++.. ..+++..|+....+++.......... +..+....++++||+.|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 24689999998777665433222211 23344567889999999999999
Q ss_pred ChhHHhhhhC-CceEEEEEEEEccCCeEEEE
Q 023280 243 YPFVREGLVN-KTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 243 ~p~v~~~v~~-g~L~V~G~~YDi~tG~v~~~ 272 (284)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999998753
No 9
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-52 Score=368.97 Aligned_cols=199 Identities=32% Similarity=0.491 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchh
Q 023280 75 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 153 (284)
Q Consensus 75 ~~l~~Ll~GN~~F~~~~~~~~p~~~~~La-~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~ 153 (284)
..+++|++||++|.++.+..++.+|+.++ ++|+|+++|||||||||+||.+||++|||+||+||+||+|++++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 46799999999999999888999999876 569999999999999999999999999999999999999998753 5
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcc-cccchHHHHH
Q 023280 154 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEA 232 (284)
Q Consensus 154 ~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 232 (284)
+++|||||+.+|||++|||||||+|||++|+++....+.. .+.+|+....+.........+..... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999876544332 68999977666654443322222222 4445667899
Q ss_pred HHHHHHHhhcChhHHhhhhCCc-eEEEEEEEEccCCeEEEEeccCCCCC
Q 023280 233 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSLSP 280 (284)
Q Consensus 233 V~~qv~~L~~~p~v~~~v~~g~-L~V~G~~YDi~tG~v~~~~~~~~~~~ 280 (284)
|+.|+.+|+++|.|+.++..++ |.||||+||++||+++.++......+
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 9999999999999999988877 99999999999999998887665433
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1e-51 Score=375.73 Aligned_cols=190 Identities=22% Similarity=0.335 Sum_probs=162.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhHH---hhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCC
Q 023280 70 DTKAFDSVERIKEGFIHFKREKYEKNPALYS---ELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 146 (284)
Q Consensus 70 ~~~p~~~l~~Ll~GN~~F~~~~~~~~p~~~~---~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~ 146 (284)
..+|.+++++|++||+||+++.+. +++++. ++++||+|+++|||||||||+||.|||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 478999999999999999998864 444432 467899999999999999999999999999999999999999975
Q ss_pred CCccchhhHHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhc-CCCCccccc
Q 023280 147 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQC 225 (284)
Q Consensus 147 d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~ 225 (284)
++++||||||.+|+|++|||||||+||||+|+++.. ..+++..|+..+.|++....... ...+..+.+
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~-----~~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNV-----ELGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcC-----CcchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 267899999999999999999999999999998642 24689999999999886543211 111223455
Q ss_pred chHHHHHHHHHHHHhhc-ChhHHhhhhCCceEEEEEEEEccCCeEEEE
Q 023280 226 TYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 226 ~~~~~~nV~~qv~~L~~-~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~ 272 (284)
..++++||+.|+++|++ +|++++++++|+|+||||+||+.||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 67889999999999986 799999999999999999999999999886
No 11
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-52 Score=377.60 Aligned_cols=246 Identities=48% Similarity=0.758 Sum_probs=231.6
Q ss_pred cccCchhHHHhhhhhHHHHHHHHHHHHhhhcCchhhHhHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhhhccCChh
Q 023280 18 DFVDKFLREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPA 97 (284)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~l~~Ll~GN~~F~~~~~~~~p~ 97 (284)
+...+.+..+|.+++|+.+++...++|..+.++ ++++|++++|++ .+.+++|+++|..|.++.+.++|.
T Consensus 15 ~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~Fv~~~~~~~~~~p~ 83 (276)
T KOG1578|consen 15 RKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMFVVRNSGNYIPNPT 83 (276)
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhHhhhccccCCCChh
Confidence 334456778999999999999999999999998 999999999994 567899999999999999999999
Q ss_pred hHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCC
Q 023280 98 LYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSA 177 (284)
Q Consensus 98 ~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~ 177 (284)
+|..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+|+|+|+..+..++|+|||+|.+|+|++|+||||++
T Consensus 84 ~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~ 163 (276)
T KOG1578|consen 84 LFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSL 163 (276)
T ss_pred hhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEecccc
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred CCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEE
Q 023280 178 CGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLAL 257 (284)
Q Consensus 178 CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V 257 (284)
|||++++|....++. ..+|+..|+.+..+++.+++.+...+.+.+||..|+.++++.++.+|.+||++++++.+|.+.+
T Consensus 164 cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~ 242 (276)
T KOG1578|consen 164 CGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQV 242 (276)
T ss_pred CCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceee
Confidence 999999998876655 7789999999998999888888888899999999999999999999999999999999999999
Q ss_pred EEEEEEccCCeEEEEecc
Q 023280 258 KGGYYDFVNGSFELWGLD 275 (284)
Q Consensus 258 ~G~~YDi~tG~v~~~~~~ 275 (284)
||++||+..|.+++|.++
T Consensus 243 ~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 243 HGGYYNFSKGTKEFWELD 260 (276)
T ss_pred eeeeEEeccCceeEEEec
Confidence 999999999999999999
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.1e-47 Score=325.74 Aligned_cols=150 Identities=35% Similarity=0.533 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcc---CChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCc
Q 023280 73 AFDSVERIKEGFIHFKREKYE---KNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 149 (284)
Q Consensus 73 p~~~l~~Ll~GN~~F~~~~~~---~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~ 149 (284)
|.+++++|++||++|.+++.. ..++.|.+++++|+|+++||||||||++|+.+|+++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 678899999999999987542 1256789999999999999999999999999999999999999999999986
Q ss_pred cchhhHHHHHHHHHhcCcceEEEeccCCCCccccccccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHH
Q 023280 150 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 229 (284)
Q Consensus 150 ~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~ 229 (284)
++++|||||+.+|||++|||||||+||+++++ ++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37799999999999999999999999998863 34
Q ss_pred HHHHHHHHHHhhcChhHHh-hhhCCceEEEEEEEEccCCeEEEE
Q 023280 230 KEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 230 ~~nV~~qv~~L~~~p~v~~-~v~~g~L~V~G~~YDi~tG~v~~~ 272 (284)
++||+.|+++|+++|+|++ ++++|+|.||||+||++||+++++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6899999999999999988 999999999999999999999863
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.3e-43 Score=300.15 Aligned_cols=152 Identities=34% Similarity=0.564 Sum_probs=121.6
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccccccc
Q 023280 110 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 189 (284)
Q Consensus 110 ~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~ 189 (284)
++||||||||++|+.+|+.+|||+||+||+||+|++.+ .++++|||||+.+||+++|||||||+||++++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 68999999999999999999999999999999998864 36889999999999999999999999999998765321
Q ss_pred CCCCCchhHHHHHHhccchhhhhhhhc-CCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEccCCe
Q 023280 190 DGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 268 (284)
Q Consensus 190 ~g~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~tG~ 268 (284)
..+.+++|++...|+......+. ......+.....+++||+.|+++|+++|+|++++++++|.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34689999998888776532221 1111112223447899999999999999999999999999999999999998
Q ss_pred E
Q 023280 269 F 269 (284)
Q Consensus 269 v 269 (284)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.6e-42 Score=280.44 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=111.7
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023280 106 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 185 (284)
Q Consensus 106 Q~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~ 185 (284)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 799999999999999999999999999999999999999864 35889999999999999999999999999875
Q ss_pred ccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEcc
Q 023280 186 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 265 (284)
Q Consensus 186 ~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~ 265 (284)
..++||+.|+++|+++|+++++++.+++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 24689999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 023280 266 NGSFELW 272 (284)
Q Consensus 266 tG~v~~~ 272 (284)
||+++.+
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.7e-39 Score=270.40 Aligned_cols=141 Identities=23% Similarity=0.280 Sum_probs=112.9
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023280 106 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 185 (284)
Q Consensus 106 Q~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~ 185 (284)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 4689999999999999999999999999999999999986 377899999999999999999999999999864
Q ss_pred ccccCCCCCchhHHHHHHhccchhhhhhhhcCCCCcccccchHHHHHHHHHHHHhhcChhHHhhhhCCceEEEEEEEEcc
Q 023280 186 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 265 (284)
Q Consensus 186 ~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~v~~~v~~g~L~V~G~~YDi~ 265 (284)
+ .+..|+............ ...........+++||+.|+++|+++|+++ .+++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~-----~~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIP-----DDVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCcc-----CCCEEEEEEEECC
Confidence 3 255676542211100000 011111123456899999999999999999 4899999999999
Q ss_pred CCeEEE
Q 023280 266 NGSFEL 271 (284)
Q Consensus 266 tG~v~~ 271 (284)
||+++.
T Consensus 136 tG~v~~ 141 (142)
T cd03379 136 TGKLTE 141 (142)
T ss_pred CCEEEe
Confidence 999975
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.38 E-value=9e-09 Score=94.50 Aligned_cols=188 Identities=21% Similarity=0.259 Sum_probs=120.4
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEcccccC
Q 023280 80 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 143 (284)
Q Consensus 80 Ll~GN~~F~~~~~~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i----------------~~~~pGE~FVvRNaGN~V 143 (284)
|+.|..+|+........ .++..-++|.+..++|+|||+-|... +....||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~~~---~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKDLV---EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHHhH---HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 67788888876543222 56677889999999999999999877 667899999999999999
Q ss_pred CCCCCccchh-------hHHHHHHHHHhcCcceEEEeccCCCCcccccccccc--CC---CCCchhHHHHHHhccc-hh-
Q 023280 144 PPYDQTKYAG-------VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--DG---NNSTDFIEDWVKIGIP-AK- 209 (284)
Q Consensus 144 ~~~d~~~~~~-------~~asLEyAv~~L~V~~IVV~GHs~CGav~a~~~~~~--~g---~~~~~~i~~wl~~~~p-a~- 209 (284)
+.... |.+ --++|+.|+......+|+||||++|-+++...+... +. ......++.|+....- .+
T Consensus 80 ~~p~~--f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIi 157 (276)
T KOG1578|consen 80 PNPTL--FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENII 157 (276)
T ss_pred CChhh--hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEE
Confidence 87421 111 114677788888899999999999999997654322 11 1223578899864210 00
Q ss_pred -------hh------hhhhcCCCCccc-cc-----------chHHHHHHHHHHHHhhcChhHH--hhhhCCceEEEE--E
Q 023280 210 -------SK------VLTEHGDKPFGD-QC-----------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--G 260 (284)
Q Consensus 210 -------~~------~~~~~~~~~~~~-~~-----------~~~~~~nV~~qv~~L~~~p~v~--~~v~~g~L~V~G--~ 260 (284)
.. ...+.+..+|.+ |. ..+.+.|..+|..|..++.+.. .++......+++ -
T Consensus 158 v~ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k 237 (276)
T KOG1578|consen 158 VIGHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVK 237 (276)
T ss_pred EeccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhh
Confidence 00 000001112221 10 1122346778999988877766 556666666666 5
Q ss_pred EEEccCCeEEEE
Q 023280 261 YYDFVNGSFELW 272 (284)
Q Consensus 261 ~YDi~tG~v~~~ 272 (284)
+.+...|..+.+
T Consensus 238 ~~l~~~G~~Y~f 249 (276)
T KOG1578|consen 238 GFLQVHGGYYNF 249 (276)
T ss_pred cceeeeeeeEEe
Confidence 555556655433
No 17
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=65.95 E-value=52 Score=33.76 Aligned_cols=150 Identities=23% Similarity=0.273 Sum_probs=83.5
Q ss_pred HhhhhhHHHHHHHHHHHHhhhcCchhhHhHhHHHHHHHhcCCC------CCChH---HHH----HHHHHHHHHHHhhhc-
Q 023280 27 DMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS------DTKAF---DSV----ERIKEGFIHFKREKY- 92 (284)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~p~---~~l----~~Ll~GN~~F~~~~~- 92 (284)
++-.++|-.+-.-+..++.+-++++.....+++-.+.++-..- -.+|. ..+ +.|++|-+.|.+...
T Consensus 60 ~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP~~~~~~~~t~g~~l~~G~~~~~~D~~~ 139 (532)
T TIGR01838 60 DFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNPEALRLTVETQGESLVRGMENLAEDLER 139 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCHHHHHHHHHcCChhHHHHHHHHHHHHHh
Confidence 4567888877778888887777788877777766655554322 13443 122 567888888876321
Q ss_pred --------cCChhhHHhhh-cCC--------------------------CCcEEEEeecCCCCChhhhcCCCCCc-----
Q 023280 93 --------EKNPALYSELA-KGQ--------------------------SPKYMVFACSDSRVCPSHVLDFQPGE----- 132 (284)
Q Consensus 93 --------~~~p~~~~~La-~gQ--------------------------~P~~lvitCsDSRV~pe~i~~~~pGE----- 132 (284)
..+.+.|+=-. -++ .|-.+|=+|. .-..||++.||.
T Consensus 140 ~~~~~~i~~~~~~~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i----~k~yilDL~p~~Slv~~ 215 (532)
T TIGR01838 140 GGGDLKIRQTDSSAFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWI----NKYYILDLRPQNSLVRW 215 (532)
T ss_pred cCCCCCCCCCCccceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECccc----ccceeeecccchHHHHH
Confidence 12233332100 112 2323333321 123456655443
Q ss_pred -------eEEE--EcccccCCCCCCccc--hhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 023280 133 -------AFVV--RNVANIVPPYDQTKY--AGVGAAVEYAVLHLKVSNIVVIGHSACGGI 181 (284)
Q Consensus 133 -------~FVv--RNaGN~V~~~d~~~~--~~~~asLEyAv~~L~V~~IVV~GHs~CGav 181 (284)
+|++ ||.|---.+.....| .++.++|++....+|.+.|.++||+ .||.
T Consensus 216 L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~c-mGGt 274 (532)
T TIGR01838 216 LVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYC-IGGT 274 (532)
T ss_pred HHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEEC-cCcH
Confidence 4333 665533221111112 3466788888888999999999995 4554
No 18
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=57.83 E-value=24 Score=37.95 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=29.4
Q ss_pred HHhhcChhHHhhhhCCce------EEEEEEEEccCCeEEEEeccC
Q 023280 238 SNLLTYPFVREGLVNKTL------ALKGGYYDFVNGSFELWGLDF 276 (284)
Q Consensus 238 ~~L~~~p~v~~~v~~g~L------~V~G~~YDi~tG~v~~~~~~~ 276 (284)
..|...|-||+.+++..| ...|+..|.-|-+|++++.+.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 345566777777766544 468999999999999998764
No 19
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=57.21 E-value=8.9 Score=30.15 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=17.0
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
+|.|+||+++..+|+|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 5779999999999999865
No 20
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=44.71 E-value=41 Score=28.09 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=35.5
Q ss_pred cCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcC
Q 023280 93 EKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 166 (284)
Q Consensus 93 ~~~p~~~~~La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~ 166 (284)
.-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-. +..||+ ||+||.+.+.
T Consensus 58 ~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 58 QIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc--------------cHHHHHHHHH
Confidence 3489999998777777 5888898875554332 3444433 333664 5777776643
No 21
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=43.89 E-value=1.1e+02 Score=27.76 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=41.7
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCC-CCceEEE---EcccccCCCCCCccchhhHHHHHHHHHhcC
Q 023280 95 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQ-PGEAFVV---RNVANIVPPYDQTKYAGVGAAVEYAVLHLK 166 (284)
Q Consensus 95 ~p~~~~~La~gQ~P~~lvitCsDSRV----~pe~i~~~~-pGE~FVv---RNaGN~V~~~d~~~~~~~~asLEyAv~~L~ 166 (284)
.++.+++++..++|.=++.-|...+. +.+.++... .+-++++ ++.|| + ++|-=....+|
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~N------------l-Gai~Rta~a~G 120 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDPHN------------L-GACLRSADAAG 120 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCCcch------------H-HHHHHHHHHcC
Confidence 45667888888777766666654332 223333322 2223332 22222 2 35555677899
Q ss_pred cceEEEeccCCCC
Q 023280 167 VSNIVVIGHSACG 179 (284)
Q Consensus 167 V~~IVV~GHs~CG 179 (284)
++.|++.+|+.+.
T Consensus 121 ~~~vi~~~~~~~~ 133 (244)
T PRK11181 121 VHAVIVPKDRSAQ 133 (244)
T ss_pred CCEEEECCCCCCC
Confidence 9999998887554
No 22
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=34.89 E-value=14 Score=28.06 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=12.5
Q ss_pred EEEEEEEccCCeEE
Q 023280 257 LKGGYYDFVNGSFE 270 (284)
Q Consensus 257 V~G~~YDi~tG~v~ 270 (284)
.|||.||+.||++.
T Consensus 66 ~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 66 CHGWRFDLDTGECV 79 (97)
T ss_dssp TTTEEEETTTSBEE
T ss_pred CcCCEEeCCCceEe
Confidence 69999999999874
No 23
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.83 E-value=25 Score=29.90 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.4
Q ss_pred cceEEEeccCCCCc
Q 023280 167 VSNIVVIGHSACGG 180 (284)
Q Consensus 167 V~~IVV~GHs~CGa 180 (284)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 57899999999993
No 24
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=31.99 E-value=18 Score=27.99 Aligned_cols=14 Identities=43% Similarity=0.994 Sum_probs=11.5
Q ss_pred CccccccCCccccC
Q 023280 1 MTNKHISNGRWLSD 14 (284)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (284)
|-|-|..+|||+-|
T Consensus 30 lVNvHf~~GrWm~P 43 (85)
T PF12503_consen 30 LVNVHFPNGRWMYP 43 (85)
T ss_pred cEEEEecCCceecC
Confidence 56889999999874
No 25
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=31.94 E-value=1.6e+02 Score=24.21 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=57.0
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCcc
Q 023280 102 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 181 (284)
Q Consensus 102 La~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav 181 (284)
+..|-.|++.++-+==-|-+...... .....+.++|..+.+.. +...+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45688999999988777777654443 55678999999999986 36678889977766678888887776655
Q ss_pred cccc
Q 023280 182 KGLM 185 (284)
Q Consensus 182 ~a~~ 185 (284)
-+.+
T Consensus 78 Pail 81 (121)
T PF04019_consen 78 PAIL 81 (121)
T ss_pred HHHH
Confidence 5544
No 26
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.87 E-value=95 Score=23.44 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHh--hhcCchhhHh
Q 023280 28 MANQSYEEAIEALKKLLK--EKEDLKPVAA 55 (284)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 55 (284)
|...+||+|+.+|.+++. |+++++.-.+
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Lees 30 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLDDS 30 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 677889999999988776 4555554333
No 27
>PRK11440 putative hydrolase; Provisional
Probab=29.87 E-value=1e+02 Score=26.45 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.1
Q ss_pred cCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCCccc
Q 023280 126 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 182 (284)
Q Consensus 126 ~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGav~ 182 (284)
+...+||.++.++--+-... + .|+.-....|+++|+|+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45678898777765444332 1 35656778999999999965444443
No 28
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=29.61 E-value=35 Score=29.09 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=12.2
Q ss_pred cceEEEeccCCCC
Q 023280 167 VSNIVVIGHSACG 179 (284)
Q Consensus 167 V~~IVV~GHs~CG 179 (284)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 29
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=29.33 E-value=21 Score=27.13 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.8
Q ss_pred EEEEEEEEccCCeEE
Q 023280 256 ALKGGYYDFVNGSFE 270 (284)
Q Consensus 256 ~V~G~~YDi~tG~v~ 270 (284)
..|||.||+.||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 479999999999863
No 30
>PRK14432 acylphosphatase; Provisional
Probab=28.73 E-value=42 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=17.0
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 023280 254 TLALKGGYYDFVNGSFELWG 273 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~~ 273 (284)
++.|.||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 57799999999999988653
No 31
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=28.57 E-value=28 Score=24.31 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.1
Q ss_pred EEEEEEccCCeEE
Q 023280 258 KGGYYDFVNGSFE 270 (284)
Q Consensus 258 ~G~~YDi~tG~v~ 270 (284)
-|..||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4889999999874
No 32
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=28.33 E-value=53 Score=27.39 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023280 152 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 183 (284)
Q Consensus 152 ~~~~asLEyAv~~L~V~~IVV~GHs~CGav~a 183 (284)
....+.+++-...||++.|.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45668899999999999999999976 55443
No 33
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=27.90 E-value=20 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.7
Q ss_pred EEEEEEEEccCCeEE
Q 023280 256 ALKGGYYDFVNGSFE 270 (284)
Q Consensus 256 ~V~G~~YDi~tG~v~ 270 (284)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 369999999999764
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.79 E-value=39 Score=31.35 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.6
Q ss_pred CcceEEEeccCCCCc
Q 023280 166 KVSNIVVIGHSACGG 180 (284)
Q Consensus 166 ~V~~IVV~GHs~CGa 180 (284)
.-+-|.|+|||+||=
T Consensus 28 ~GEfvsilGpSGcGK 42 (248)
T COG1116 28 KGEFVAILGPSGCGK 42 (248)
T ss_pred CCCEEEEECCCCCCH
Confidence 347899999999994
No 35
>PRK14440 acylphosphatase; Provisional
Probab=26.45 E-value=52 Score=25.46 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.8
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023280 253 KTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 253 g~L~V~G~~YDi~tG~v~~~ 272 (284)
.++.|.||+.+..+|+|+.+
T Consensus 27 ~~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 27 IRLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HHcCCEEEEEECCCCCEEEE
Confidence 35779999999999988754
No 36
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=26.44 E-value=65 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHhhcChhHHhhhhCCceEEEEE
Q 023280 236 SLSNLLTYPFVREGLVNKTLALKGG 260 (284)
Q Consensus 236 qv~~L~~~p~v~~~v~~g~L~V~G~ 260 (284)
-|..|.+||-+-+.+.+|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3567889999999999999999885
No 37
>PRK14430 acylphosphatase; Provisional
Probab=26.39 E-value=50 Score=25.70 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.2
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|+|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4778999999999988753
No 38
>PRK14423 acylphosphatase; Provisional
Probab=25.88 E-value=61 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.0
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023280 253 KTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 253 g~L~V~G~~YDi~tG~v~~~ 272 (284)
.++.|.||+.+..+|.|+.+
T Consensus 29 ~~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 29 RELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HHcCCEEEEEECCCCeEEEE
Confidence 35789999999999998754
No 39
>PRK14445 acylphosphatase; Provisional
Probab=25.31 E-value=65 Score=24.85 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023280 253 KTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 253 g~L~V~G~~YDi~tG~v~~~ 272 (284)
.++.|.||+.+..+|+|+.+
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 28 SELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hhCCCEEEEEECCCCeEEEE
Confidence 45789999999999988753
No 40
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=25.19 E-value=41 Score=27.72 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred ceEEEeccCCCC
Q 023280 168 SNIVVIGHSACG 179 (284)
Q Consensus 168 ~~IVV~GHs~CG 179 (284)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 41
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=24.31 E-value=31 Score=26.80 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 023280 256 ALKGGYYDFVNGSF 269 (284)
Q Consensus 256 ~V~G~~YDi~tG~v 269 (284)
..|||.||+.||+.
T Consensus 63 P~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 63 PKHAGCFDYRTGEA 76 (101)
T ss_pred CccCCEEECCCCcc
Confidence 37999999999986
No 42
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=24.08 E-value=1.2e+02 Score=29.38 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=31.7
Q ss_pred hhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEecc
Q 023280 123 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 175 (284)
Q Consensus 123 e~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GH 175 (284)
.++.++++|| .||.|.||-. ++.++---+..||++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 4566899999 7999999964 4544444568899999988754
No 43
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=24.06 E-value=4.5e+02 Score=23.66 Aligned_cols=70 Identities=9% Similarity=0.105 Sum_probs=41.3
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC-ChhhhcCC---CCCc-eEEE---EcccccCCCCCCccchhhHHHHHHHHHhcC
Q 023280 95 NPALYSELAKGQSPKYMVFACSDSRV-CPSHVLDF---QPGE-AFVV---RNVANIVPPYDQTKYAGVGAAVEYAVLHLK 166 (284)
Q Consensus 95 ~p~~~~~La~gQ~P~~lvitCsDSRV-~pe~i~~~---~pGE-~FVv---RNaGN~V~~~d~~~~~~~~asLEyAv~~L~ 166 (284)
.++.+++++...+|.=++.-|...+- +.+.++.. .... +.++ ++.|| + ++|-=....+|
T Consensus 49 ~~~~l~~l~~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~N------------l-GaI~Rta~afG 115 (237)
T TIGR00186 49 DRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHN------------L-GAILRTAEAFG 115 (237)
T ss_pred CHHHHHHHhCCCCCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCcc------------H-HHHHHHHHHcC
Confidence 45667888877777766666655543 33444422 1123 2332 33333 2 35555677899
Q ss_pred cceEEEeccCC
Q 023280 167 VSNIVVIGHSA 177 (284)
Q Consensus 167 V~~IVV~GHs~ 177 (284)
++.|++.+++.
T Consensus 116 ~~~vil~~~~~ 126 (237)
T TIGR00186 116 VDGVILPKRRS 126 (237)
T ss_pred CCEEEECCCCc
Confidence 99999988853
No 44
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=24.02 E-value=42 Score=27.64 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.4
Q ss_pred EEEEEEEEccCCeEEEE
Q 023280 256 ALKGGYYDFVNGSFELW 272 (284)
Q Consensus 256 ~V~G~~YDi~tG~v~~~ 272 (284)
..|||.||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 36999999999998654
No 45
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=23.95 E-value=36 Score=30.42 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=21.8
Q ss_pred hcChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCC
Q 023280 241 LTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSL 278 (284)
Q Consensus 241 ~~~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~~~~~~~ 278 (284)
+.||+++.+++. |-.+|+.+|+++.++....+
T Consensus 142 ~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~ 173 (202)
T PF01707_consen 142 RRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNL 173 (202)
T ss_dssp CC-CCHCCHCCC------T-EEETTTTCEES--TTS--
T ss_pred HhCchhhhcccc------CeeEeecCCceecCCCcccc
Confidence 689999988765 67899999999877665544
No 46
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=23.20 E-value=2.3e+02 Score=26.61 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=38.0
Q ss_pred hcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCCC
Q 023280 103 AKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACG 179 (284)
Q Consensus 103 a~gQ~P~~lvitCsDSRV~pe~i~~~~pGE~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CG 179 (284)
+.-+-|+++|-| ||=|-+.+..+.--=-+|+=|+-++-... + +...|--|+..-++..+||++ ..=|
T Consensus 78 ag~~dPKimvTT---SR~PSsrL~~FaKelkLvfPNaqr~nRG~----~--~~~~lv~a~ra~~~Td~iivH-EhRG 144 (290)
T KOG2781|consen 78 AGEEDPKIMVTT---SRDPSSRLKMFAKELKLVFPNAQRLNRGN----Y--VVGELVDAARANGVTDLIIVH-EHRG 144 (290)
T ss_pred ccCCCCcEEEEe---CCCchHHHHHHHHhheEeccChhhhcccc----e--eHHHHHHHHHHCCCceEEEEe-ccCC
Confidence 556789988776 44444444433322234555554443221 1 234566688889988887774 4444
No 47
>PRK14429 acylphosphatase; Provisional
Probab=23.18 E-value=69 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|+|+.+
T Consensus 27 ~~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 27 ALGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4779999999999988753
No 48
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.08 E-value=98 Score=24.46 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCccccc
Q 023280 154 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 184 (284)
Q Consensus 154 ~~asLEyAv~~L~V~~IVV~GHs~CGav~a~ 184 (284)
+...|.-.+...+-..|+|+|||==|++..+
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 80 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASL 80 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHH
Confidence 4445555566666789999999987776643
No 49
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=22.76 E-value=32 Score=26.69 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=12.2
Q ss_pred EEEEEEEEccCCeE
Q 023280 256 ALKGGYYDFVNGSF 269 (284)
Q Consensus 256 ~V~G~~YDi~tG~v 269 (284)
..|||.||+.||+.
T Consensus 68 p~Hg~~Fdl~tG~~ 81 (105)
T TIGR02378 68 PLHKRNFRLEDGRC 81 (105)
T ss_pred CcCCCEEEcCCccc
Confidence 36999999999975
No 50
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=22.75 E-value=28 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=12.4
Q ss_pred EEEEEEEEccCCeE
Q 023280 256 ALKGGYYDFVNGSF 269 (284)
Q Consensus 256 ~V~G~~YDi~tG~v 269 (284)
..|||.||+.||+.
T Consensus 71 P~H~~~Fdl~TG~~ 84 (108)
T PRK09511 71 PLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCEEECCCccc
Confidence 37999999999975
No 51
>PRK14448 acylphosphatase; Provisional
Probab=22.71 E-value=63 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 27 KIGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 4779999999999988754
No 52
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.35 E-value=48 Score=26.86 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=10.6
Q ss_pred eEEEeccCCCCc
Q 023280 169 NIVVIGHSACGG 180 (284)
Q Consensus 169 ~IVV~GHs~CGa 180 (284)
+|+|+||++||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 53
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=22.17 E-value=35 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHhhc-ChhHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCCC
Q 023280 236 SLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 280 (284)
Q Consensus 236 qv~~L~~-~p~v~~~v~~g~L~V~G~~YDi~tG~v~~~~~~~~~~~ 280 (284)
|-..++. -|.-++.|+..+ .|+=.+||.+||+-+++.-+++|-.
T Consensus 150 qksr~~am~PmTkEEyearQ-SvIRrVvDpETGRtRLIkGdGEilE 194 (225)
T PF10500_consen 150 QKSRIQAMAPMTKEEYEARQ-SVIRRVVDPETGRTRLIKGDGEILE 194 (225)
T ss_pred hhhhhhhcCCCCHHHHHHHH-hhheeeecCCCCceeeecccchHHH
Confidence 3445554 377888887655 5677999999999999988877643
No 54
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=22.11 E-value=1.2e+02 Score=22.69 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=18.9
Q ss_pred ceEEEEEEEEccC--CeEEEEeccCC
Q 023280 254 TLALKGGYYDFVN--GSFELWGLDFS 277 (284)
Q Consensus 254 ~L~V~G~~YDi~t--G~v~~~~~~~~ 277 (284)
++.|+||++.+.. |.+.++++.-+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~ 26 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDP 26 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECC
Confidence 3689999999997 68888887543
No 55
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=21.99 E-value=32 Score=26.71 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.9
Q ss_pred EEEEEEEccCCeE
Q 023280 257 LKGGYYDFVNGSF 269 (284)
Q Consensus 257 V~G~~YDi~tG~v 269 (284)
.|||.||+.||+.
T Consensus 68 ~Hg~~Fdl~tG~~ 80 (103)
T cd03529 68 LYKQHFSLKTGRC 80 (103)
T ss_pred CCCCEEEcCCCCc
Confidence 6999999999985
No 56
>PRK14451 acylphosphatase; Provisional
Probab=21.63 E-value=70 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.5
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|+|+..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (89)
T PRK14451 28 QLMISGWARNLADGRVEVF 46 (89)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 5779999999999998754
No 57
>PRK14441 acylphosphatase; Provisional
Probab=21.53 E-value=90 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.1
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 023280 253 KTLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 253 g~L~V~G~~YDi~tG~v~~~ 272 (284)
.++.|.||+.+..+|+|+.+
T Consensus 29 ~~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 29 RRLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hhcCcEEEEEECCCCEEEEE
Confidence 46889999999999988753
No 58
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=21.52 E-value=53 Score=28.63 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred ceEEEeccCCCCc
Q 023280 168 SNIVVIGHSACGG 180 (284)
Q Consensus 168 ~~IVV~GHs~CGa 180 (284)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4799999999993
No 59
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=21.26 E-value=39 Score=26.85 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=12.5
Q ss_pred EEEEEEEEccCCeE
Q 023280 256 ALKGGYYDFVNGSF 269 (284)
Q Consensus 256 ~V~G~~YDi~tG~v 269 (284)
..||+.||+.||+.
T Consensus 67 p~H~a~Fdl~tG~~ 80 (106)
T COG2146 67 PLHGARFDLRTGEC 80 (106)
T ss_pred CccCCEEEcCCCce
Confidence 47999999999986
No 60
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=21.12 E-value=35 Score=27.62 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=13.1
Q ss_pred EEEEEEEEccCCeEE
Q 023280 256 ALKGGYYDFVNGSFE 270 (284)
Q Consensus 256 ~V~G~~YDi~tG~v~ 270 (284)
..|||-||+.||+..
T Consensus 71 P~Hg~~FDLrTG~~~ 85 (107)
T cd03473 71 TKHNWKLDVSTMKYV 85 (107)
T ss_pred CCCCCEEEcCCCCCc
Confidence 479999999999874
No 61
>PRK14425 acylphosphatase; Provisional
Probab=20.62 E-value=82 Score=24.54 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.4
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|.|+.+
T Consensus 31 ~~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 31 RLGLTGWVRNESDGSVTAL 49 (94)
T ss_pred HhCCEEEEEECCCCeEEEE
Confidence 4678999999999999854
No 62
>PRK14426 acylphosphatase; Provisional
Probab=20.53 E-value=80 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 5789999999999988753
No 63
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.46 E-value=67 Score=27.36 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.5
Q ss_pred cCcceEEEeccCCCCc
Q 023280 165 LKVSNIVVIGHSACGG 180 (284)
Q Consensus 165 L~V~~IVV~GHs~CGa 180 (284)
=++..|+|+|+++||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3468999999999993
No 64
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=20.14 E-value=66 Score=29.60 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=12.4
Q ss_pred cceEEEeccCCCCc
Q 023280 167 VSNIVVIGHSACGG 180 (284)
Q Consensus 167 V~~IVV~GHs~CGa 180 (284)
.++|.|+||.+||=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 57899999999994
No 65
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.10 E-value=42 Score=26.12 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=12.2
Q ss_pred EEEEEEEEccCCeE
Q 023280 256 ALKGGYYDFVNGSF 269 (284)
Q Consensus 256 ~V~G~~YDi~tG~v 269 (284)
..|||.||++||..
T Consensus 62 P~Hg~~Fdl~~G~~ 75 (108)
T cd03474 62 RAHLWQFDADTGEG 75 (108)
T ss_pred CCcCCEEECCCccc
Confidence 37999999999974
No 66
>PRK14436 acylphosphatase; Provisional
Probab=20.01 E-value=88 Score=24.21 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 023280 254 TLALKGGYYDFVNGSFELW 272 (284)
Q Consensus 254 ~L~V~G~~YDi~tG~v~~~ 272 (284)
++.|.||+.+..+|+|+.+
T Consensus 29 ~l~l~G~V~N~~dG~Vei~ 47 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAV 47 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 4779999999999988754
Done!