BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023281
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
 pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
          Length = 387

 Score = 30.8 bits (68), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 107 IVRIAFEI--NNYSFRLFYDCSSPGASHVYFQACY-FPDHLPVELMPIDTFFSDGQRGIY 163
           ++R+A +I  NN   R+   CS           C+  P    ++ M     F DG   + 
Sbjct: 166 VLRLAKDIAENNKGARVLIVCSE------MTTTCFRGPSETHLDSMIGQALFGDGAAAVI 219

Query: 164 ISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNL 207
           +    D  ++  +FE     + I+ E+   I   L E  +S++L
Sbjct: 220 VGADPDLTVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHL 263


>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
           From Clostridium Difficile
 pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
           From Clostridium Difficile
          Length = 119

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 58  ANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEM---------IV 108
           AN E+  +    +D +L   + NP+   H+ VVP        D    EM         I 
Sbjct: 12  ANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVIN 71

Query: 109 RIAFE--INNYSFRLFYDCSSPGASHV 133
           +IA E   +   FR+  +C S G   V
Sbjct: 72  KIAKEKGFDQTGFRVINNCGSDGGQEV 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,243,127
Number of Sequences: 62578
Number of extensions: 324158
Number of successful extensions: 807
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)