Query 023281
Match_columns 284
No_of_seqs 170 out of 462
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03103 GDP-L-galactose-hexos 100.0 5.7E-76 1.2E-80 557.7 27.1 277 1-278 80-394 (403)
2 KOG2720 Predicted hydrolase (H 100.0 2.1E-59 4.6E-64 430.1 16.4 267 2-276 87-389 (431)
3 COG0537 Hit Diadenosine tetrap 99.5 1E-13 2.2E-18 115.8 9.0 89 46-139 1-103 (138)
4 PRK10687 purine nucleoside pho 99.4 4.7E-13 1E-17 109.1 8.3 90 45-139 2-106 (119)
5 cd01278 aprataxin_related apra 99.3 7.6E-12 1.7E-16 98.7 8.9 89 47-139 1-104 (104)
6 cd01276 PKCI_related Protein K 99.3 1.5E-11 3.2E-16 96.9 8.5 88 47-139 1-103 (104)
7 cd01275 FHIT FHIT (fragile his 99.2 1.5E-10 3.3E-15 94.5 8.8 88 48-139 1-102 (126)
8 cd01277 HINT_subgroup HINT (hi 99.1 4E-10 8.8E-15 88.2 8.8 88 47-139 1-102 (103)
9 PF01230 HIT: HIT domain; Int 99.1 1.9E-10 4.1E-15 89.8 6.9 73 67-139 8-94 (98)
10 COG4360 APA2 ATP adenylyltrans 99.0 1.4E-09 3E-14 97.3 10.1 185 70-264 91-297 (298)
11 cd00468 HIT_like HIT family: H 99.0 1.7E-09 3.6E-14 81.8 7.9 69 70-138 4-85 (86)
12 KOG3275 Zinc-binding protein o 98.7 4.3E-08 9.4E-13 78.7 8.1 90 45-139 15-118 (127)
13 PRK05270 galactose-1-phosphate 98.7 3E-07 6.6E-12 89.8 14.6 189 46-242 172-411 (493)
14 TIGR00209 galT_1 galactose-1-p 98.6 4.9E-08 1.1E-12 93.2 6.7 91 45-139 193-301 (347)
15 PRK11720 galactose-1-phosphate 98.6 6.6E-08 1.4E-12 92.3 6.7 91 45-139 193-301 (346)
16 PF11969 DcpS_C: Scavenger mRN 98.5 2.1E-07 4.6E-12 75.4 6.3 90 47-142 1-106 (116)
17 TIGR01239 galT_2 galactose-1-p 98.5 4.6E-06 1E-10 81.5 15.0 189 46-242 169-408 (489)
18 PLN02643 ADP-glucose phosphory 98.3 1E-06 2.2E-11 83.9 7.1 87 45-139 197-301 (336)
19 cd00608 GalT Galactose-1-phosp 98.2 1.7E-06 3.8E-11 81.9 6.2 91 45-139 183-293 (329)
20 PF04677 CwfJ_C_1: Protein sim 98.1 3.5E-05 7.6E-10 63.1 9.6 91 44-141 9-109 (121)
21 KOG3379 Diadenosine polyphosph 98.0 2.1E-05 4.5E-10 65.1 7.4 70 70-139 23-105 (150)
22 PF09830 ATP_transf: ATP adeny 97.9 1.8E-05 4E-10 57.3 4.3 59 204-264 1-62 (62)
23 KOG4359 Protein kinase C inhib 97.7 0.00012 2.7E-09 60.8 7.0 99 45-151 30-142 (166)
24 COG4468 GalT Galactose-1-phosp 97.7 0.00016 3.4E-09 69.4 8.5 189 46-242 174-413 (503)
25 KOG2476 Uncharacterized conser 97.3 0.00039 8.5E-09 67.9 5.8 87 44-140 317-416 (528)
26 cd00608 GalT Galactose-1-phosp 97.2 0.016 3.4E-07 55.1 15.8 221 27-261 13-329 (329)
27 PRK11720 galactose-1-phosphate 96.8 0.19 4E-06 48.3 19.1 221 27-261 23-338 (346)
28 COG1085 GalT Galactose-1-phosp 96.5 0.051 1.1E-06 51.8 12.9 72 186-263 245-331 (338)
29 TIGR00209 galT_1 galactose-1-p 96.4 0.37 8.1E-06 46.3 18.3 223 26-262 22-339 (347)
30 PLN02643 ADP-glucose phosphory 96.1 0.95 2.1E-05 43.3 19.0 225 27-264 15-335 (336)
31 KOG0562 Predicted hydrolase (H 93.3 0.14 3.1E-06 44.0 4.6 74 71-145 23-110 (184)
32 PF02744 GalP_UDP_tr_C: Galact 90.3 0.41 8.9E-06 41.2 4.3 89 46-139 13-119 (166)
33 COG1085 GalT Galactose-1-phosp 75.2 14 0.00031 35.4 8.0 134 44-199 183-334 (338)
34 PF02611 CDH: CDP-diacylglycer 75.0 9.6 0.00021 34.5 6.4 68 74-142 35-119 (222)
35 KOG2477 Uncharacterized conser 71.8 14 0.0003 37.3 7.2 89 46-139 407-506 (628)
36 PRK05471 CDP-diacylglycerol py 66.0 8.7 0.00019 35.4 4.2 68 74-142 64-148 (252)
37 TIGR00672 cdh CDP-diacylglycer 65.7 14 0.0003 34.0 5.4 62 81-142 69-147 (250)
38 KOG0604 MAP kinase-activated p 47.8 41 0.00089 32.3 5.4 98 184-282 163-305 (400)
39 COG4840 Uncharacterized protei 45.2 45 0.00097 24.5 4.1 37 242-278 29-69 (71)
40 KOG1379 Serine/threonine prote 37.6 43 0.00093 32.0 3.9 53 232-284 243-296 (330)
41 PF10114 PocR: Sensory domain 37.5 68 0.0015 26.8 4.9 72 211-283 81-162 (173)
42 PF11460 DUF3007: Protein of u 37.4 56 0.0012 26.1 3.9 31 243-275 72-102 (104)
43 PHA02698 hypothetical protein; 35.8 71 0.0015 24.1 4.0 41 243-283 35-86 (89)
44 TIGR01837 PHA_granule_1 poly(h 35.2 63 0.0014 26.1 4.1 40 243-282 72-112 (118)
45 PF03241 HpaB: 4-hydroxyphenyl 31.7 65 0.0014 28.5 3.9 44 235-278 114-159 (205)
46 KOG2958 Galactose-1-phosphate 28.0 61 0.0013 30.7 3.2 91 44-144 197-311 (354)
47 smart00478 ENDO3c endonuclease 27.7 1.4E+02 0.003 24.3 5.1 41 241-281 22-62 (149)
48 TIGR02530 flg_new flagellar op 25.4 1.1E+02 0.0023 24.1 3.7 28 254-281 21-50 (96)
49 PF06277 EutA: Ethanolamine ut 24.9 1.8E+02 0.0039 29.4 6.0 117 164-283 104-227 (473)
50 PF06569 DUF1128: Protein of u 24.9 1.4E+02 0.003 22.3 4.0 37 242-278 29-69 (71)
51 PF01186 Lysyl_oxidase: Lysyl 23.6 45 0.00097 29.8 1.4 33 5-38 142-178 (205)
52 PF09851 SHOCT: Short C-termin 23.3 1.6E+02 0.0034 18.0 3.4 24 253-276 7-30 (31)
53 smart00586 ZnF_DBF Zinc finger 22.7 76 0.0016 21.9 2.1 45 229-280 5-49 (49)
54 PF14771 DUF4476: Domain of un 22.4 1.2E+02 0.0027 22.9 3.6 34 248-281 39-72 (95)
55 TIGR00135 gatC glutamyl-tRNA(G 22.3 1.6E+02 0.0034 22.3 4.2 32 249-280 1-34 (93)
56 COG0177 Nth Predicted EndoIII- 22.2 1.9E+02 0.0041 26.0 5.1 41 241-281 59-99 (211)
57 PF00730 HhH-GPD: HhH-GPD supe 20.8 1E+02 0.0022 23.6 2.8 44 232-278 22-65 (108)
58 PRK00034 gatC aspartyl/glutamy 20.3 1.8E+02 0.004 22.0 4.2 33 248-280 2-36 (95)
59 KOG3969 Uncharacterized conser 20.1 2.7E+02 0.0058 26.3 5.8 57 86-143 190-259 (310)
No 1
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=100.00 E-value=5.7e-76 Score=557.69 Aligned_cols=277 Identities=40% Similarity=0.613 Sum_probs=250.1
Q ss_pred CCcccceeeCCceeEEEeeCceeEEEEEcCccCCCcc----------------CCcccc-CCCcceeeecCCCccccccC
Q 023281 1 MWRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDPF----------------ILNSID-QNEELLFCVTRSEKANSELI 63 (284)
Q Consensus 1 ~~~g~frY~l~~~~tr~l~g~~~f~~QlNp~R~~~~~----------------k~~~~k-~~~~c~fc~~~~~~~~~~~~ 63 (284)
|++|+|||||++|+||+|||+++|+||||++|.+++| ||||+| +++|.+||....+++..+..
T Consensus 80 ~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~~~~~~ 159 (403)
T PLN03103 80 MARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPEFF 159 (403)
T ss_pred HhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCcccccc
Confidence 7899999999999999999999999999999999987 799999 99999999987765545555
Q ss_pred CCcccC--CCcEEEEEeCccCCCCeEEEeecccccC--CCChhHHHHHHHHHHhcCCccceEEeecCCCC--CCceEEEE
Q 023281 64 PSAAVP--NDSILVIINANPIEYGHVFVVPCGSNRL--YPDARSFEMIVRIAFEINNYSFRLFYDCSSPG--ASHVYFQA 137 (284)
Q Consensus 64 ~~~~~~--~~~~~vliN~~Pi~~gH~l~vP~~~~~~--~l~~~~~~~~~~~~~~~~~~gf~vgyNsgaa~--~nHLHfh~ 137 (284)
+++.+. ++...|+||+|||++||+|+||+...++ +|+.++++++++++.++++++|||||||.||. +||||||+
T Consensus 160 ~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa 239 (403)
T PLN03103 160 PSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINHLHFQA 239 (403)
T ss_pred cCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcceeeeee
Confidence 444332 5678999999999999999999998875 99999999999999999999999999964443 49999999
Q ss_pred eecCCccceeecCCccccc-CCCCceEEEEccCCCeeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCCceEEEEeCCeEE
Q 023281 138 CYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRI 216 (284)
Q Consensus 138 ~~~~~~lPie~~~~~~l~~-~~~~g~~~~~l~~yp~~~f~~~~~~~~~e~~~~~~~~~~~~L~~~~~~~Nl~~~~~~~rv 216 (284)
+|++++||||.+|++++.. ...+|..+|+|.|||+++|||++ +++.+.+++.+++++++|+.+++|||||+|++|+||
T Consensus 240 ~yl~~~lPvE~ap~~~l~~~~~~~g~~vy~L~~yP~~~lvf~~-~~~~~~l~~~v~~~~~~L~~~niP~NL~i~~~g~rv 318 (403)
T PLN03103 240 YYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEG-GSDLEDLANSVADACICLQDNNIPYNLLISDCGKRV 318 (403)
T ss_pred cccCCCCccccCccccccccccCCCceEEEecCCCceEEEEEe-CccHHHHHHHHHHHHHhhccCCcceEEEEEcCCeEE
Confidence 9999999999999998752 22356789999999999999995 577899999999999999999999999999999999
Q ss_pred EEEeccC--------------CCCCCcceecccceeeecChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhh
Q 023281 217 FLFLQKS--------------AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 217 ~ifPR~~--------------~~~~~pa~~ElaG~li~~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~ 278 (284)
||||.+. .++||||+||||||||+|+++||+++||++|+++|+|||||+++|++|+++|++.
T Consensus 319 flfP~Cy~~k~~~g~v~~~lL~s~~NPA~~EmsG~l~~~~~eDfe~lTE~~~~~il~EvsLse~~f~ev~~~i~~~ 394 (403)
T PLN03103 319 FLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHIVLKRKEDYERATEEYAWRLLAEVSLSEERFQEVKALCFAA 394 (403)
T ss_pred EEeCchhhhhhhccccchhHhhccCChhhHhhcceeeecchHhhhhcCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 9999442 2679999999999999999999999999999999999999999999999999987
No 2
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=100.00 E-value=2.1e-59 Score=430.07 Aligned_cols=267 Identities=31% Similarity=0.499 Sum_probs=230.4
Q ss_pred CcccceeeCCceeEEEeeCceeEEEEEcCccCCCc-c--------------CCcccc-CCCcceeeecCCCccccccCCC
Q 023281 2 WRGCFRYDVTASEIKVISGGKKFLAQLNEKWIMDP-F--------------ILNSID-QNEELLFCVTRSEKANSELIPS 65 (284)
Q Consensus 2 ~~g~frY~l~~~~tr~l~g~~~f~~QlNp~R~~~~-~--------------k~~~~k-~~~~c~fc~~~~~~~~~~~~~~ 65 (284)
.+|+|||+|++|+||+|||+|||.+|||.+|...| | ||||+| .++|.+|-.....+ .++
T Consensus 87 q~glF~Y~l~~c~tr~ipGkygf~aqLN~~R~~lrrrP~~f~~v~~~F~h~~FNF~Kv~~~Ellf~~k~~~~----~m~- 161 (431)
T KOG2720|consen 87 QRGLFRYDLTACETRVIPGKYGFYAQLNEGRNHLRRRPTEFRVVLQPFDHMKFNFTKVGQEELLFQFKAATD----PMP- 161 (431)
T ss_pred hhccccccccccceeccCcccceeeeeccccchhhcCCchhhhcccccccceecccccccceEEEEEecCCC----CCC-
Confidence 46999999999999999999999999999996555 3 899999 99999998754411 111
Q ss_pred cccCCCcEEEEEeCccCCCCeEEEeecccccC--CCChhHHHHHHHHHHhcCCccceEEeecCCCCC--CceEEEEeecC
Q 023281 66 AAVPNDSILVIINANPIEYGHVFVVPCGSNRL--YPDARSFEMIVRIAFEINNYSFRLFYDCSSPGA--SHVYFQACYFP 141 (284)
Q Consensus 66 ~~~~~~~~~vliN~~Pi~~gH~l~vP~~~~~~--~l~~~~~~~~~~~~~~~~~~gf~vgyNsgaa~~--nHLHfh~~~~~ 141 (284)
.-......|.||++||++||+|+||+...|+ +||..++.+++.++.+..++.||+||||+||.| ||||||++||+
T Consensus 162 -~dpe~~~vvaIN~sPie~~H~LiiP~V~kc~pQrit~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p 240 (431)
T KOG2720|consen 162 -GDPENSPVVAINVSPIEYGHVLIIPRVLKCLPQRITHKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLP 240 (431)
T ss_pred -CCcccCceEEEecCccccCcEEEecchhccCcceeeHHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhcc
Confidence 0012334999999999999999999999996 999999999999999999999999999999998 99999999999
Q ss_pred CccceeecCCcccccCCCCceEEE-EccCCCeeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCCceEEEEeCCe------
Q 023281 142 DHLPVELMPIDTFFSDGQRGIYIS-TLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGK------ 214 (284)
Q Consensus 142 ~~lPie~~~~~~l~~~~~~g~~~~-~l~~yp~~~f~~~~~~~~~e~~~~~~~~~~~~L~~~~~~~Nl~~~~~~~------ 214 (284)
.++|||++++.+|.. ...|..+. .+.+||+..+.+++ +++.++.+..++.++.+|+.+|+|||||+++.|.
T Consensus 241 ~d~~i~~~p~~~l~~-~vn~~~ir~p~~~~pv~~~~~ds-~~~~~e~~d~vy~c~~~l~~nN~phNlfls~~grR~g~~p 318 (431)
T KOG2720|consen 241 MDFPIEKAPLDKLTT-TVNGVKIRAPLLGYPVRFLLNDS-GEQVAELVDTVYDCAVCLQNNNIPHNLFLSDQGRRIGLSP 318 (431)
T ss_pred ccCccccCcchhhcc-ccceEEecccccccceEEEEecc-chHHHHHHHHHHHHHHHHhhCCCCceEEeeccCccccCCC
Confidence 999999999999865 34555565 57899998888877 2567888899999999999999999999997664
Q ss_pred EEEEEeccC--------CCCCCcceecccceeeecChHHHhhcCHHHHHHHHH-hccCChHHHHHHHHHHH
Q 023281 215 RIFLFLQKS--------AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLS-AVSLNDEGFQVVKQLCC 276 (284)
Q Consensus 215 rv~ifPR~~--------~~~~~pa~~ElaG~li~~~~edf~~lTe~~i~~il~-evsl~~~~f~~l~~~~~ 276 (284)
.+++|||.- .+.||||+|||||++++|+++|||.+||++++++++ |+|+++++|.++.-.+.
T Consensus 319 qcyvf~~a~~e~~~~k~~tqfNpa~~ElaG~m~l~~~~~~E~asE~~v~r~i~teasls~e~fre~~tli~ 389 (431)
T KOG2720|consen 319 QCYVFKQALGEVSVNKLLTQFNPAVWELAGHMVLKRKEDYEGASELQVWRLIATEASLSEERFREVITLIF 389 (431)
T ss_pred ceEEehhhhcccccccChhhcChHHHhhcCCccccchhhhccccHHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 456666654 577999999999999999999999999999999999 89999999997766554
No 3
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.49 E-value=1e-13 Score=115.84 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=66.5
Q ss_pred CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------c
Q 023281 46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------I 114 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~ 114 (284)
..|+||..-+.+. ... ++| ++++++++|.+|+++||+|+||.+|.. + .++++....++.++++ .
T Consensus 1 ~~ciFc~ii~~e~-~~~----~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~ 75 (138)
T COG0537 1 MMCIFCKIIRGEI-PAN----KVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAF 75 (138)
T ss_pred CCceeeeeecCCC-Cce----EEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3699997555422 222 677 778999999999999999999998885 4 8887665544444332 3
Q ss_pred CCccceEEeecCC--C-CCCceEEEEee
Q 023281 115 NNYSFRLFYDCSS--P-GASHVYFQACY 139 (284)
Q Consensus 115 ~~~gf~vgyNsga--a-~~nHLHfh~~~ 139 (284)
+++|||++.|.|. + ...|+|+|++.
T Consensus 76 ~~~g~ni~~N~g~~agq~V~HlH~HvIP 103 (138)
T COG0537 76 GADGYNIGINNGKAAGQEVFHLHIHIIP 103 (138)
T ss_pred CCCceEEEEecCcccCcCcceEEEEEcC
Confidence 6789999999653 2 34999999998
No 4
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.43 E-value=4.7e-13 Score=109.12 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHH-------HHHHh-
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIV-------RIAFE- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~-------~~~~~- 113 (284)
.++|+||..-+.+. +.. +++ ++.++++++.+|+.+||+|+||.+|.. + .++++....+. +++++
T Consensus 2 ~~~CiFC~I~~g~~-p~~----~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~ 76 (119)
T PRK10687 2 AEETIFSKIIRREI-PSD----IVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQE 76 (119)
T ss_pred CCCCchhhhhcCCC-CCC----EEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHh
Confidence 35799997655432 222 567 788999999999999999999999995 4 77766433221 22221
Q ss_pred -cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 -INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 -~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+.+|||+++|.|.++ -.|+|+|++.
T Consensus 77 ~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~ 106 (119)
T PRK10687 77 GIAEDGYRLIMNTNRHGGQEVYHIHMHLLG 106 (119)
T ss_pred CCCCCceEEEEeCCCcCCcccCEEEEEECC
Confidence 2567999999965322 2899999988
No 5
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.32 E-value=7.6e-12 Score=98.71 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=63.1
Q ss_pred cceeeecCCCcc-ccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHH-------HHh--
Q 023281 47 ELLFCVTRSEKA-NSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRI-------AFE-- 113 (284)
Q Consensus 47 ~c~fc~~~~~~~-~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~-------~~~-- 113 (284)
.|+||.....+. +++. +++ ++.+.++++.+|..+||+|++|.+|.. + .++++....+.++ +.+
T Consensus 1 ~c~fc~i~~~e~~~~~~----iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~ 76 (104)
T cd01278 1 LCHFCDIAKRRDPDPED----QVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSD 76 (104)
T ss_pred CCccccCccCCCCCCcc----EEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHc
Confidence 499997544321 1233 456 788999999999999999999999995 4 7776544433222 222
Q ss_pred -cCCccceEEeecCCCCC-CceEEEEee
Q 023281 114 -INNYSFRLFYDCSSPGA-SHVYFQACY 139 (284)
Q Consensus 114 -~~~~gf~vgyNsgaa~~-nHLHfh~~~ 139 (284)
..++|||+|+|+|-... +|+|+|+.+
T Consensus 77 ~~~~~~~n~g~h~~p~~~v~H~H~Hvi~ 104 (104)
T cd01278 77 NTDPSEFRFGFHAPPFTSVSHLHLHVIA 104 (104)
T ss_pred CCCccCeEEEeCCCCCcCeeeEEEEeeC
Confidence 35679999999876322 999999863
No 6
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.28 E-value=1.5e-11 Score=96.90 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=61.3
Q ss_pred cceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhH---HHHHH----HHHHhcC-
Q 023281 47 ELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS---FEMIV----RIAFEIN- 115 (284)
Q Consensus 47 ~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~---~~~~~----~~~~~~~- 115 (284)
.|+||...+.+. +.. +++ ++.+.++++.+|..+||+|++|.+|.. + .++++. +..++ ++++...
T Consensus 1 ~C~fc~i~~~e~-~~~----iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~ 75 (104)
T cd01276 1 DCIFCKIIRGEI-PAK----KVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGI 75 (104)
T ss_pred CCcceecccCCC-ccC----EEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCC
Confidence 499997655322 222 556 788999999999999999999999995 4 655432 22222 2333334
Q ss_pred -CccceEEeecCCC--CC-CceEEEEee
Q 023281 116 -NYSFRLFYDCSSP--GA-SHVYFQACY 139 (284)
Q Consensus 116 -~~gf~vgyNsgaa--~~-nHLHfh~~~ 139 (284)
++|||+++|.|-. .. .|+|+|++.
T Consensus 76 ~~~~~n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 76 AEDGYRLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred CCCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence 6899999995532 22 799999975
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.16 E-value=1.5e-10 Score=94.55 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=63.3
Q ss_pred ceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH-------h-cCC
Q 023281 48 LLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF-------E-INN 116 (284)
Q Consensus 48 c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~-------~-~~~ 116 (284)
|+||.....+.+... +++ ++.+.++++.+|..+||++++|.+|.. + .++++....++++++ + .++
T Consensus 1 C~fC~i~~~e~~~~~----iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~ 76 (126)
T cd01275 1 CVFCDIPIKPDEDNL----VFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKP 76 (126)
T ss_pred CccccCccCCCcccc----EEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899976544321122 456 788999999999999999999999995 4 777755443323333 1 256
Q ss_pred ccceEEeecCCCC--C-CceEEEEee
Q 023281 117 YSFRLFYDCSSPG--A-SHVYFQACY 139 (284)
Q Consensus 117 ~gf~vgyNsgaa~--~-nHLHfh~~~ 139 (284)
.|||+++|+|-.. . .|+|+|++.
T Consensus 77 ~~~n~~~~~g~~~gq~v~H~HiHiiP 102 (126)
T cd01275 77 DGFNIGINDGKAGGGIVPHVHIHIVP 102 (126)
T ss_pred CceEEEEeCCcccCCCcCEEEEEEeC
Confidence 7999999965422 2 899999997
No 8
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.11 E-value=4e-10 Score=88.20 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=62.6
Q ss_pred cceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------hcC
Q 023281 47 ELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF--------EIN 115 (284)
Q Consensus 47 ~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~--------~~~ 115 (284)
.|+||...+.+. +.. +++ ++.+.++++.+|..+||++++|.+|.. + .++++....+.++++ ..+
T Consensus 1 ~C~~c~ii~~e~-~~~----iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~ 75 (103)
T cd01277 1 DCIFCKIIAGEI-PSY----KVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK 75 (103)
T ss_pred CCccccccCCCC-CCC----EEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 499997654332 222 456 789999999999999999999999995 5 777654333223332 236
Q ss_pred CccceEEeecCC---CCCCceEEEEee
Q 023281 116 NYSFRLFYDCSS---PGASHVYFQACY 139 (284)
Q Consensus 116 ~~gf~vgyNsga---a~~nHLHfh~~~ 139 (284)
++|||+++|.|- ..-.|+|+|++.
T Consensus 76 ~~~~n~~~~~~~~~g~~~~H~HiHiiP 102 (103)
T cd01277 76 ADGLNILQNNGRAAGQVVFHVHVHVIP 102 (103)
T ss_pred CCceEEEEeCCcccCcccCEEEEEEcc
Confidence 789999999542 222899999974
No 9
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.11 E-value=1.9e-10 Score=89.84 Aligned_cols=73 Identities=15% Similarity=0.296 Sum_probs=53.9
Q ss_pred ccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------cCCccceEEeecCCCC---CCc
Q 023281 67 AVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------INNYSFRLFYDCSSPG---ASH 132 (284)
Q Consensus 67 ~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~~~~gf~vgyNsgaa~---~nH 132 (284)
+++ ++.+.++++.+|..+||+|+||.+|.. + .++++....++++++. .++.|+|+++|.|+++ -.|
T Consensus 8 vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~H 87 (98)
T PF01230_consen 8 VVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPH 87 (98)
T ss_dssp EEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS
T ss_pred EEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCE
Confidence 456 778999999999999999999999995 4 7776544433344332 2678999999954433 289
Q ss_pred eEEEEee
Q 023281 133 VYFQACY 139 (284)
Q Consensus 133 LHfh~~~ 139 (284)
+|+|++.
T Consensus 88 lH~HviP 94 (98)
T PF01230_consen 88 LHFHVIP 94 (98)
T ss_dssp -EEEEEE
T ss_pred EEEEEec
Confidence 9999987
No 10
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.4e-09 Score=97.33 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=110.6
Q ss_pred CCcEEEEEeCccCCCCeEEEeecccc-cC-CCChhHHHHHHHHHHhcCCccceEEeecCCCC---CCceEEEEeecC---
Q 023281 70 NDSILVIINANPIEYGHVFVVPCGSN-RL-YPDARSFEMIVRIAFEINNYSFRLFYDCSSPG---ASHVYFQACYFP--- 141 (284)
Q Consensus 70 ~~~~~vliN~~Pi~~gH~l~vP~~~~-~~-~l~~~~~~~~~~~~~~~~~~gf~vgyNsgaa~---~nHLHfh~~~~~--- 141 (284)
++.+..++|+||.-+.|+|+|-+.-. +- .+|..-+..+...+.... | -+|||||-.+ .+|=|+|++.++
T Consensus 91 s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~~ld--g-lvFYNsGp~aGaSq~HkHLQi~pmPfv~ 167 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLCGLD--G-LVFYNSGPIAGASQDHKHLQIVPMPFVA 167 (298)
T ss_pred chhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHhccc--c-eEEecCCCCcCcCCCccceeEeeccccc
Confidence 34678999999999999888876655 34 777654555546655554 6 7999964322 299999999965
Q ss_pred --CccceeecCCcccccCCCCce-EEEEccCCCeeEEEEEEecCCHHHHHH--HHHHHHHHhh-------hcCCCceEEE
Q 023281 142 --DHLPVELMPIDTFFSDGQRGI-YISTLIDYPIKTILFEYTYNNRIIMME--AISEICSSLR-------EKNISYNLLI 209 (284)
Q Consensus 142 --~~lPie~~~~~~l~~~~~~g~-~~~~l~~yp~~~f~~~~~~~~~e~~~~--~~~~~~~~L~-------~~~~~~Nl~~ 209 (284)
..+|.-.+-..+-+ +...++ ..+.+..-| .=.+.. .+..++.. ...++...+. +...+||++.
T Consensus 168 ~~~~lpn~~dhFl~t~-ntePlvsF~havapl~--~~~~~d--~dlgamcy~sIyqrlL~~~gl~t~e~p~~~~sYNlll 242 (298)
T COG4360 168 FQDQLPNGKDHFLPTF-NTEPLVSFAHAVAPLP--SAWVVD--EDLGAMCYLSIYQRLLTFFGLWTNEDPELSKSYNLLL 242 (298)
T ss_pred cccccCchHhhcchhc-ccCCCcchhheeccCC--hHhccC--hhhhhHHHHHHHHHHHHHHhhhccCCcccCcceeeee
Confidence 12222111110000 011111 011111111 101111 22222211 1223333221 2233589999
Q ss_pred EeCCeEEEEEeccC--CCCCCcceecccceeeecChHHHhhcCHHHHHHHHHhccCC
Q 023281 210 SDCGKRIFLFLQKS--AISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLN 264 (284)
Q Consensus 210 ~~~~~rv~ifPR~~--~~~~~pa~~ElaG~li~~~~edf~~lTe~~i~~il~evsl~ 264 (284)
|+. -++|.||.. .-..++-+.--||.|.+++++.++.+|+.-=..||.||.++
T Consensus 243 Tre--wi~iVPRSqe~~q~I~vNslGfaG~lLvkn~e~le~ltq~gpl~iL~evgia 297 (298)
T COG4360 243 TRE--WICIVPRSQEDSQSISVNSLGFAGMLLVKNEEELEILTQHGPLAILLEVGIA 297 (298)
T ss_pred eee--eEEEeecchhhhheecccccccceeEEecCHHHHHHHhhCCchhhHhhhccC
Confidence 996 577899998 44455666777899999999999999999888899999874
No 11
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.00 E-value=1.7e-09 Score=81.76 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH----h----cCCccceEEeecCCCC--C-CceEEE
Q 023281 70 NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF----E----INNYSFRLFYDCSSPG--A-SHVYFQ 136 (284)
Q Consensus 70 ~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~----~----~~~~gf~vgyNsgaa~--~-nHLHfh 136 (284)
++.+.+++|.+|..+||+++||.+|.. + .++++.+..++.+++ . .+.+|+|+++|.|... . .|+|+|
T Consensus 4 ~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~h 83 (86)
T cd00468 4 DEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLH 83 (86)
T ss_pred cCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEE
Confidence 578899999999999999999988885 5 777654443323332 2 2567999999965322 2 899999
Q ss_pred Ee
Q 023281 137 AC 138 (284)
Q Consensus 137 ~~ 138 (284)
++
T Consensus 84 ii 85 (86)
T cd00468 84 VL 85 (86)
T ss_pred eC
Confidence 86
No 12
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=98.74 E-value=4.3e-08 Score=78.72 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=63.5
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C----CCChhHHHHHHHHHHh----c
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L----YPDARSFEMIVRIAFE----I 114 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~----~l~~~~~~~~~~~~~~----~ 114 (284)
...|+||..-+. + +|..+++ ++.++.+...+|-.|||+|+||..|.. + ..+++.+.-+|..++. .
T Consensus 15 ~~~tIF~kIi~k-e----IPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~ 89 (127)
T KOG3275|consen 15 AAPTIFCKIIRK-E----IPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKAL 89 (127)
T ss_pred CCCcEeeeeecc-c----CCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHh
Confidence 478999976542 2 3444677 789999999999999999999999942 2 4555555544444443 3
Q ss_pred C-CccceEEeecCC--CCC-CceEEEEee
Q 023281 115 N-NYSFRLFYDCSS--PGA-SHVYFQACY 139 (284)
Q Consensus 115 ~-~~gf~vgyNsga--a~~-nHLHfh~~~ 139 (284)
+ ..||||-.|=|- +.. .|+|||+.-
T Consensus 90 Gl~~gYrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 90 GLEDGYRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred CcccceeEEEcCCcccceEEEEEEEEEeC
Confidence 2 357888888333 333 999999875
No 13
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.71 E-value=3e-07 Score=89.77 Aligned_cols=189 Identities=16% Similarity=0.215 Sum_probs=135.6
Q ss_pred CcceeeecCCCccccccCC--------CcccCCCcEEEEEeCccCCCCeEEEeecccccC-CCChhHHHHHHHHHHhcCC
Q 023281 46 EELLFCVTRSEKANSELIP--------SAAVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEINN 116 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~--------~~~~~~~~~~vliN~~Pi~~gH~l~vP~~~~~~-~l~~~~~~~~~~~~~~~~~ 116 (284)
..|.+|..|.+=...-..| ...+.|+....--=||.|..-|+.+. ...|.+ .++..++.-+++++....
T Consensus 172 P~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl-~~~H~PMkI~~~tF~rLL~fv~~fP- 249 (493)
T PRK05270 172 PKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVL-SEKHRPMKISRKTFERLLDFVEQFP- 249 (493)
T ss_pred CcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEe-cCccCccEecHHHHHHHHHHHHhCC-
Confidence 4799999877422111111 00122566777788999999996554 555556 899988887779999885
Q ss_pred ccceEEee-----cCCCCCCceEEEEeecCCccceeecCCccccc-CCCCceEEEEccCCCeeEEEEEEecCCHHHHHHH
Q 023281 117 YSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEA 190 (284)
Q Consensus 117 ~gf~vgyN-----sgaa~~nHLHfh~~~~~~~lPie~~~~~~l~~-~~~~g~~~~~l~~yp~~~f~~~~~~~~~e~~~~~ 190 (284)
+|-+|=| -|||+=.|=|||++. +.+|++.++...-+. ..-.++ -..+.+||..++.+.+ +|.+.++++
T Consensus 250 -hYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V-~agivkWPmSviRL~~--~~~~~l~~~ 323 (493)
T PRK05270 250 -HYFIGSNADLPIVGGSILSHDHYQGGR--HTFPMAKAPIEEEFTLAGYPDV-KAGIVKWPMSVIRLTS--KNKDELIDA 323 (493)
T ss_pred -ccccccCCCCCcccccccccccccCCC--cccccccCccceEEecCCCCcc-eEEEeeCcceEEEeec--CCHHHHHHH
Confidence 8999999 499999999999997 999999999865322 122333 3345889999998888 999999999
Q ss_pred HHHHHHHhhhcC------------CCceEEE--E--e-CCeEEEEEeccCC-----CC--------------CCcceecc
Q 023281 191 ISEICSSLREKN------------ISYNLLI--S--D-CGKRIFLFLQKSA-----IS--------------GNLLAWEC 234 (284)
Q Consensus 191 ~~~~~~~L~~~~------------~~~Nl~~--~--~-~~~rv~ifPR~~~-----~~--------------~~pa~~El 234 (284)
...+.+....-. +|||-+- . + +.+-+-++.|..+ |. =|.|..|.
T Consensus 324 a~~Il~~Wr~YsDe~~~I~a~tdg~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~e~hHIKKENIGLIEV 403 (493)
T PRK05270 324 ADKILEAWRGYSDESVDILAYTDGTPHNTITPIARRRGGKYELDLVLRNNRTSEEHPDGIFHPHPEVHHIKKENIGLIEV 403 (493)
T ss_pred HHHHHHHHhCCCccccceeecCCCCcccCCCceEEecCCeeEEEEEeecCCCccccCCccccCchhhhccccccccHHhh
Confidence 899988665544 5666531 1 2 3367778888872 21 24799999
Q ss_pred cceeeecC
Q 023281 235 GGYFLFGS 242 (284)
Q Consensus 235 aG~li~~~ 242 (284)
-|+-|+|-
T Consensus 404 MGLAILP~ 411 (493)
T PRK05270 404 MGLAILPG 411 (493)
T ss_pred hhhhcCcH
Confidence 99998885
No 14
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.64 E-value=4.9e-08 Score=93.19 Aligned_cols=91 Identities=7% Similarity=0.042 Sum_probs=62.0
Q ss_pred CCcceeeecCCCc-cccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh-------
Q 023281 45 NEELLFCVTRSEK-ANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~-~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~------- 113 (284)
.+.|+||..-..+ ...+. +++ ++++.+++..+|+.+||+||||.+|.. + .++++.+..+.++++.
T Consensus 193 ~g~clfcdIi~~E~~~~~r----iV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~ 268 (347)
T TIGR00209 193 HKSPMLVDYVKRELADKSR----TVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDN 268 (347)
T ss_pred cCCccHHHHHHhHhhcCCe----EEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999654322 11233 567 889999999999999999999999995 5 7777654433344332
Q ss_pred -c-CCccceEEeecC---CCCCCc--eEEEEee
Q 023281 114 -I-NNYSFRLFYDCS---SPGASH--VYFQACY 139 (284)
Q Consensus 114 -~-~~~gf~vgyNsg---aa~~nH--LHfh~~~ 139 (284)
. .+++||+|+|.+ +...+| +|+|++.
T Consensus 269 ~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiP 301 (347)
T TIGR00209 269 LFETSFPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (347)
T ss_pred HhCCCCCcceeEEecccCCCCCcEEEEEEEEeC
Confidence 2 345899999932 222355 7777765
No 15
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.61 E-value=6.6e-08 Score=92.29 Aligned_cols=91 Identities=7% Similarity=-0.017 Sum_probs=62.6
Q ss_pred CCcceeeecCCCcc-ccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh-------
Q 023281 45 NEELLFCVTRSEKA-NSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~-~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~------- 113 (284)
...|+||..-+.+. ..+. +++ ++++.+++..+|..|||+||+|.+|.. + .++++....+.++++.
T Consensus 193 ~g~Clfcdii~~E~~~~~R----iV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~ 268 (346)
T PRK11720 193 HGSPLLVDYVQRELADGER----IVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDN 268 (346)
T ss_pred cCCeEHHHHHHhhhhcCCe----EEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899997544321 1123 566 889999999999999999999999995 5 7777654433344332
Q ss_pred -c-CCccceEEeecC---C-CCC-CceEEEEee
Q 023281 114 -I-NNYSFRLFYDCS---S-PGA-SHVYFQACY 139 (284)
Q Consensus 114 -~-~~~gf~vgyNsg---a-a~~-nHLHfh~~~ 139 (284)
. .+..||+|+|.+ + +.. -|+|+|++.
T Consensus 269 ~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiP 301 (346)
T PRK11720 269 LFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYP 301 (346)
T ss_pred HhCCCCCCceeEEecccCCCCCeeEEEEEEEeC
Confidence 2 344799999943 2 222 688888876
No 16
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.52 E-value=2.1e-07 Score=75.41 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=59.2
Q ss_pred cceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeecc-ccc-C-CCChhHHHHHH-------HHHHhc-
Q 023281 47 ELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCG-SNR-L-YPDARSFEMIV-------RIAFEI- 114 (284)
Q Consensus 47 ~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~-~~~-~-~l~~~~~~~~~-------~~~~~~- 114 (284)
.|+||...+.++ ++. +++ ++.+.++-+.||-.+.|+|+||.. +.. + .|+.+-+.++- +++++.
T Consensus 1 ~cif~~i~~~~~-~~~----vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~ 75 (116)
T PF11969_consen 1 NCIFCIIIRGEE-PER----VLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEY 75 (116)
T ss_dssp HHHHHHHTTSSS-GGG----ESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEeEcCCC-CCc----EEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 489998776554 333 566 789999999999999999999999 554 4 77766544432 222221
Q ss_pred ----CCccceEEeecCCCCCCceEEEEeecCC
Q 023281 115 ----NNYSFRLFYDCSSPGASHVYFQACYFPD 142 (284)
Q Consensus 115 ----~~~gf~vgyNsgaa~~nHLHfh~~~~~~ 142 (284)
....+++||...=+. +|||+|++..+.
T Consensus 76 ~~~~~~~~~~~gfH~~PS~-~HLHlHvi~~~~ 106 (116)
T PF11969_consen 76 PGDLDSDDIRLGFHYPPSV-YHLHLHVISPDF 106 (116)
T ss_dssp -TT-EGGGEEEEEESS-SS-SS-EEEEEETTS
T ss_pred ccccchhhhcccccCCCCc-ceEEEEEccCCC
Confidence 235899999965544 899999999543
No 17
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.46 E-value=4.6e-06 Score=81.46 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=134.1
Q ss_pred CcceeeecCCCccccccCC--------CcccCCCcEEEEEeCccCCCCeEEEeecccccC-CCChhHHHHHHHHHHhcCC
Q 023281 46 EELLFCVTRSEKANSELIP--------SAAVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEINN 116 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~--------~~~~~~~~~~vliN~~Pi~~gH~l~vP~~~~~~-~l~~~~~~~~~~~~~~~~~ 116 (284)
..|.+|..|.+=...-..| ...+.++....-.=||.|..-|+.+. ...|.+ .++..++.-+++++....
T Consensus 169 PkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl-~~~H~PMkI~~~tF~~Ll~fv~~fP- 246 (489)
T TIGR01239 169 PACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVL-KGKHEPMEISKKTFERLLSFLGKFP- 246 (489)
T ss_pred CccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEe-cCccCCcEecHHHHHHHHHHHHhCC-
Confidence 3799999877422111111 00122556677778999999996654 555556 899988887779999885
Q ss_pred ccceEEee-----cCCCCCCceEEEEeecCCccceeecCCccccc-CCCCceEEEEccCCCeeEEEEEEecCCHHHHHHH
Q 023281 117 YSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEA 190 (284)
Q Consensus 117 ~gf~vgyN-----sgaa~~nHLHfh~~~~~~~lPie~~~~~~l~~-~~~~g~~~~~l~~yp~~~f~~~~~~~~~e~~~~~ 190 (284)
+|-+|=| -|||+=.|=|||++. +.+|++.++...-+. ..-.++ -.-+..||..++.+.+ .+.+.++++
T Consensus 247 -hYFiGSNADLPIVGGSILsHdHyQgG~--h~FpM~kA~i~~~f~~~~~p~V-~agivkWPmSviRL~~--~~~~~l~~~ 320 (489)
T TIGR01239 247 -HYFIGSNADLPIVGGSILSHDHYQGGR--HDFPMARAEAEEVYELNDYPDV-SAGIVKWPMSVLRLQG--EDPGELAEA 320 (489)
T ss_pred -ccccccCCCCCcccccccccccccCCC--cccccccCCcceEEecCCCCcc-eEEEEeccceEEEecc--CCHHHHHHH
Confidence 8999999 499998999999997 999999999855322 111222 2335789999998888 888889888
Q ss_pred HHHHHHHhhhc------------CCCceEEE--E--e-CCeEEEEEeccCCCC-------------------CCcceecc
Q 023281 191 ISEICSSLREK------------NISYNLLI--S--D-CGKRIFLFLQKSAIS-------------------GNLLAWEC 234 (284)
Q Consensus 191 ~~~~~~~L~~~------------~~~~Nl~~--~--~-~~~rv~ifPR~~~~~-------------------~~pa~~El 234 (284)
...+.+....- +.|||-+- . + +.+-+-++.|..+++ =|.|..|.
T Consensus 321 a~~Il~~Wr~YsDe~~~I~A~t~g~pHnTITPIaR~~~~~yElDLVLRnN~Tsee~P~GIFHPH~evhHIKKENIGLIEV 400 (489)
T TIGR01239 321 ADHIFRTWQTYSDEKAGIAAYSDGTPHHTVTPIARRRDGKYELDLVLRDNQTSEEYPDGIFHPHQDVHHIKKENIGLIEV 400 (489)
T ss_pred HHHHHHHHhCCCccccceEecCCCCccccCCceEEecCCceEEEEEeecCCCccccCCccccCcHhhhhhhhhhhhHHhh
Confidence 88888865544 35676531 1 2 337777899987322 13699999
Q ss_pred cceeeecC
Q 023281 235 GGYFLFGS 242 (284)
Q Consensus 235 aG~li~~~ 242 (284)
.|+=|+|-
T Consensus 401 MGLAILP~ 408 (489)
T TIGR01239 401 MGLAILPG 408 (489)
T ss_pred hhhhcCCH
Confidence 99999883
No 18
>PLN02643 ADP-glucose phosphorylase
Probab=98.34 E-value=1e-06 Score=83.86 Aligned_cols=87 Identities=9% Similarity=0.105 Sum_probs=59.8
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH----h----
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF----E---- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~----~---- 113 (284)
...|+||..-.. |. +++ ++++.+++..+|..|||++|+|.+|.. + .++++....+.++++ .
T Consensus 197 ~g~Clfcdii~~----E~----iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~ 268 (336)
T PLN02643 197 TGKCSLCEVVKK----DL----LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQ 268 (336)
T ss_pred hCCCcHHHHHhC----cc----EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 357999975432 21 355 789999999999999999999999995 5 777754333223333 2
Q ss_pred cCCccceEEeecCCC---C--CCceEE--EEee
Q 023281 114 INNYSFRLFYDCSSP---G--ASHVYF--QACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa---~--~nHLHf--h~~~ 139 (284)
.+.++||+++|+|-. . ..|.|+ |++.
T Consensus 269 ~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~P 301 (336)
T PLN02643 269 LNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVP 301 (336)
T ss_pred cCCCCceeeeecCCCccccCcccceEEEEEEec
Confidence 255699999995432 1 256666 5554
No 19
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.24 E-value=1.7e-06 Score=81.93 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCcceeeecCCCc-cccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh-------
Q 023281 45 NEELLFCVTRSEK-ANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~-~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~------- 113 (284)
.+.|+||..-... ...+. +++ ++.+.+++=..|..|||++|+|.+|.. + .++++....+.++++.
T Consensus 183 ~g~clfcdii~~E~~~~~r----iV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~ 258 (329)
T cd00608 183 HGRCLLCDYLKLELESKER----IVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDN 258 (329)
T ss_pred cCCccHHHHHHhhhhcCCe----EEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHH
Confidence 4689999654322 11233 566 778899998899999999999999985 5 7777544322233332
Q ss_pred -cC-CccceEEeecC---C---CCC-CceEEEEee
Q 023281 114 -IN-NYSFRLFYDCS---S---PGA-SHVYFQACY 139 (284)
Q Consensus 114 -~~-~~gf~vgyNsg---a---a~~-nHLHfh~~~ 139 (284)
.+ +.+||+|+|++ + +.. -|+|+|++.
T Consensus 259 ~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P 293 (329)
T cd00608 259 LFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPP 293 (329)
T ss_pred HhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCC
Confidence 24 56899999842 1 112 688888876
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.06 E-value=3.5e-05 Score=63.07 Aligned_cols=91 Identities=19% Similarity=0.377 Sum_probs=62.6
Q ss_pred CCCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH------hc
Q 023281 44 QNEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF------EI 114 (284)
Q Consensus 44 ~~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~------~~ 114 (284)
..++|.||..+..-+ ... ++. |+.+++.+-+-|+.+||++|||-.|.. . .++++..+.+-++-+ ..
T Consensus 9 ~~~~C~fCl~n~~~~-khl----iisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~ 83 (121)
T PF04677_consen 9 APDNCWFCLSNPNVE-KHL----IISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS 83 (121)
T ss_pred CCCCCCCccCCCCcc-ceE----EEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 567899998664322 333 344 899999999999999999999999995 5 778776555422211 22
Q ss_pred CCccceEEee-cCCCCCCceEEEEeecC
Q 023281 115 NNYSFRLFYD-CSSPGASHVYFQACYFP 141 (284)
Q Consensus 115 ~~~gf~vgyN-sgaa~~nHLHfh~~~~~ 141 (284)
.+.+. |+|= +. ...-|+|+|++.++
T Consensus 84 ~~~~v-vf~E~~~-~~~~H~~iq~vPvp 109 (121)
T PF04677_consen 84 QGKDV-VFFERVR-KRNPHTHIQCVPVP 109 (121)
T ss_pred cCCCE-EEEEEeC-CCCcEEEEEEEEcC
Confidence 33343 6665 42 22369999999853
No 21
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.01 E-value=2.1e-05 Score=65.08 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCcEEEEEeCccCCCCeEEEeeccccc-C-CCCh-hHHHHH------HHHHHh-cCCccceEEeecCCC---CCCceEEE
Q 023281 70 NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDA-RSFEMI------VRIAFE-INNYSFRLFYDCSSP---GASHVYFQ 136 (284)
Q Consensus 70 ~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~-~~~~~~------~~~~~~-~~~~gf~vgyNsgaa---~~nHLHfh 136 (284)
..++++++|.=|+.|||+|++|.|-.. + .||. |+.++. .++++. .+...++|++--|.- ---|+|+|
T Consensus 23 T~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvH 102 (150)
T KOG3379|consen 23 TKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVH 102 (150)
T ss_pred ccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEE
Confidence 568899999999999999999999774 5 6765 444443 122222 255579999883221 12799999
Q ss_pred Eee
Q 023281 137 ACY 139 (284)
Q Consensus 137 ~~~ 139 (284)
+..
T Consensus 103 IlP 105 (150)
T KOG3379|consen 103 ILP 105 (150)
T ss_pred Ecc
Confidence 998
No 22
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=97.88 E-value=1.8e-05 Score=57.29 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=52.8
Q ss_pred CceEEEEeCCeEEEEEeccC--C-CCCCcceecccceeeecChHHHhhcCHHHHHHHHHhccCC
Q 023281 204 SYNLLISDCGKRIFLFLQKS--A-ISGNLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLN 264 (284)
Q Consensus 204 ~~Nl~~~~~~~rv~ifPR~~--~-~~~~pa~~ElaG~li~~~~edf~~lTe~~i~~il~evsl~ 264 (284)
|||+++|++ -++|+||+. - .++..=++=++|.+-++++++.+.+.+..-.++|++|++|
T Consensus 1 ~yNll~T~~--wm~lvPR~~~~~~~~i~~Nalg~~G~llvk~~~~~~~~~~~gp~~iL~~vg~P 62 (62)
T PF09830_consen 1 SYNLLMTRR--WMMLVPRSREGFSGGISVNALGFAGMLLVKSEEELDWLKEDGPMKILREVGFP 62 (62)
T ss_pred CceEEEecC--eEEEEeccccccCCceeechhhheeeeeeCCHHHHHHHHHcCHHHHHHHhcCC
Confidence 699999987 788999999 3 5666778889999999999999999999999999999875
No 23
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.71 E-value=0.00012 Score=60.77 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=65.6
Q ss_pred CCcceeeecCCCcc-ccccCCCcccCCCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHH-------HHHHHhc
Q 023281 45 NEELLFCVTRSEKA-NSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMI-------VRIAFEI 114 (284)
Q Consensus 45 ~~~c~fc~~~~~~~-~~~~~~~~~~~~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~-------~~~~~~~ 114 (284)
.++|+||......+ ..+.+ ..-++.+.++=..+|-..-|.|+||..|.. + .|+..-..+. +.++++.
T Consensus 30 ~~~C~FCDia~r~~~~~ell---~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~ 106 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELL---HCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERN 106 (166)
T ss_pred CCceEEEEeecccCCCCcee---EecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHh
Confidence 45899996644322 12221 112677888888999999999999999984 5 6665433332 2233333
Q ss_pred ---CCccceEEeecCCCCC-CceEEEEeecCCccceeecCC
Q 023281 115 ---NNYSFRLFYDCSSPGA-SHVYFQACYFPDHLPVELMPI 151 (284)
Q Consensus 115 ---~~~gf~vgyNsgaa~~-nHLHfh~~~~~~~lPie~~~~ 151 (284)
.....+|||--.--.. .|||+|+.| |+.++..
T Consensus 107 ~~td~~~~r~GFHLPPf~SV~HLHlH~I~-----P~~DMgf 142 (166)
T KOG4359|consen 107 NFTDFTNVRMGFHLPPFCSVSHLHLHVIA-----PVDDMGF 142 (166)
T ss_pred ccCCchheeEeccCCCcceeeeeeEeeec-----chHHhch
Confidence 4567899999433333 899999999 7776654
No 24
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00016 Score=69.35 Aligned_cols=189 Identities=15% Similarity=0.216 Sum_probs=128.1
Q ss_pred CcceeeecCCCccccccCC--------CcccCCCcEEEEEeCccCCCCeEEEeecccccC-CCChhHHHHHHHHHHhcCC
Q 023281 46 EELLFCVTRSEKANSELIP--------SAAVPNDSILVIINANPIEYGHVFVVPCGSNRL-YPDARSFEMIVRIAFEINN 116 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~--------~~~~~~~~~~vliN~~Pi~~gH~l~vP~~~~~~-~l~~~~~~~~~~~~~~~~~ 116 (284)
..|++|..|.+=...-+.| -..+-++....-.-||-|.+-|+. +=..+|.+ .++..+.+-.+.++....
T Consensus 174 PkClLC~ENeGf~G~vNhPARqNhRIIp~~l~~e~W~fQySPY~YynEH~I-~l~~eH~pM~Is~~tFerlL~f~dqfP- 251 (503)
T COG4468 174 PKCLLCKENEGFYGRVNHPARQNHRIIPVELNGEQWGFQYSPYVYYNEHCI-ILNGEHRPMKISRKTFERLLSFLDQFP- 251 (503)
T ss_pred cceeeeecccccccccCCcccccceeEEEEecCceeeEeeccceeecceeE-EecCCcccceecHHHHHHHHHHHHhCC-
Confidence 4799998876411111110 001114456666678888889965 45555666 888888777768887775
Q ss_pred ccceEEee-----cCCCCCCceEEEEeecCCccceeecCCccccc-CCCCceEEEEccCCCeeEEEEEEecCCHHHHHHH
Q 023281 117 YSFRLFYD-----CSSPGASHVYFQACYFPDHLPVELMPIDTFFS-DGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEA 190 (284)
Q Consensus 117 ~gf~vgyN-----sgaa~~nHLHfh~~~~~~~lPie~~~~~~l~~-~~~~g~~~~~l~~yp~~~f~~~~~~~~~e~~~~~ 190 (284)
+|-+|=| .|||+-.|=|+|++. +.+|++.++.+.-+. ..-.++ ..-+..||...+.+++ .+...++++
T Consensus 252 -hYfiGSNADLPIVGGSILsHDHyQgG~--h~FpMakA~~eke~~~~~fp~V-~aGiVKWPMSVlRL~s--~nk~~L~~l 325 (503)
T COG4468 252 -HYFIGSNADLPIVGGSILSHDHYQGGR--HEFPMAKAELEKEFSFKGFPDV-SAGIVKWPMSVLRLQS--KNKVELIKL 325 (503)
T ss_pred -cccccCCCCCCcccceecccccccccc--ccccccccchhheeeecCCCcc-ccceeecchhheeecc--CCHHHHHHH
Confidence 9999999 599999999999997 999999999865322 111222 2224789999998888 888888888
Q ss_pred HHHHHHHhhhc------------CCCceEEEE----eCC-eEEEEEeccCCCC-------------------CCcceecc
Q 023281 191 ISEICSSLREK------------NISYNLLIS----DCG-KRIFLFLQKSAIS-------------------GNLLAWEC 234 (284)
Q Consensus 191 ~~~~~~~L~~~------------~~~~Nl~~~----~~~-~rv~ifPR~~~~~-------------------~~pa~~El 234 (284)
..+++...+.- ..|||-+-- |+| +-.=+..|..|++ =|.|..|.
T Consensus 326 Ad~il~~Wr~YSDe~~~I~a~T~dtpHnTITPIARkR~~~yELDlVLRnNrT~e~yPdGIFHPH~evhhIKKENIGLIEV 405 (503)
T COG4468 326 ADKILKKWREYSDEEVQILAYTGDTPHNTITPIARKRGGLYELDLVLRNNRTSEEYPDGIFHPHQEVHHIKKENIGLIEV 405 (503)
T ss_pred HHHHHHHHHHhcchhcceeeccCCCCCcccchhhhhcCCeeEEEEEEecCCccccCCCcccCCcHHhhhhhhhccchhee
Confidence 88887755433 456665421 344 4555667776322 13699999
Q ss_pred cceeeecC
Q 023281 235 GGYFLFGS 242 (284)
Q Consensus 235 aG~li~~~ 242 (284)
-|+-|+|-
T Consensus 406 MGLAiLP~ 413 (503)
T COG4468 406 MGLAILPG 413 (503)
T ss_pred echhhCCh
Confidence 99988886
No 25
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00039 Score=67.90 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=59.7
Q ss_pred CCCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHhcCCccce
Q 023281 44 QNEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFEINNYSFR 120 (284)
Q Consensus 44 ~~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~~~~~gf~ 120 (284)
.+.+|.||..+-..+ ..+ ++. |.++++-+=+=|++.||+||+|-.|.. . .++++....+-+.-. +++
T Consensus 317 ~pg~CwFCLSnP~vE-kHL----IVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kyka-----al~ 386 (528)
T KOG2476|consen 317 PPGSCWFCLSNPNVE-KHL----IVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKA-----ALR 386 (528)
T ss_pred CCCceEEEecCCChh-hhe----EEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHH-----HHH
Confidence 456899998764333 333 344 999999999999999999999999995 5 777766555422211 344
Q ss_pred EEeecCCCCC----------CceEEEEeec
Q 023281 121 LFYDCSSPGA----------SHVYFQACYF 140 (284)
Q Consensus 121 vgyNsgaa~~----------nHLHfh~~~~ 140 (284)
-.||+-|..+ -|||+|++.+
T Consensus 387 ~myk~~g~~~vvfE~~~~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 387 KMYKKQGKDAVVFERQSYRSVHLQLQVIPV 416 (528)
T ss_pred HHHHhcCCeEEEEEeecccceeeEEEEEec
Confidence 4455333221 5999998874
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.22 E-value=0.016 Score=55.08 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=118.6
Q ss_pred EEcCccCCCccCCccc-----c-CCCcceeeecCCCccccccCCCcccCCCcEEEEEeCccCCC----------------
Q 023281 27 QLNEKWIMDPFILNSI-----D-QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEY---------------- 84 (284)
Q Consensus 27 QlNp~R~~~~~k~~~~-----k-~~~~c~fc~~~~~~~~~~~~~~~~~~~~~~~vliN~~Pi~~---------------- 84 (284)
=..|+|...+-++... . ....|.||..+........ -.+=.+.|+-|.||...
T Consensus 13 i~a~~R~~Rp~~~~~~~~~~~~~~~~~CPfCpg~~~~~~~~~-----~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~~ 87 (329)
T cd00608 13 LVSPHRAKRPWQGQQEAPKKLPEYDPDCPLCPGNERADTGEQ-----NPDYDVRVFENDFPALKPDAPAPEDSDDGLFRT 87 (329)
T ss_pred EEcCcccCCCCCCcccccccccCCCCCCCcCCCCCCCCCCCC-----CCCCeEEEECCCCccccCCCCCCcccCCccccc
Confidence 3557777666443221 1 2356999986643200010 11235899999999884
Q ss_pred -----CeEEEeeccccc--C-CCChhHHHHHHHHHH----h-c---CCccceEEee----cCCCCCCceEEEEeecCCcc
Q 023281 85 -----GHVFVVPCGSNR--L-YPDARSFEMIVRIAF----E-I---NNYSFRLFYD----CSSPGASHVYFQACYFPDHL 144 (284)
Q Consensus 85 -----gH~l~vP~~~~~--~-~l~~~~~~~~~~~~~----~-~---~~~gf~vgyN----sgaa~~nHLHfh~~~~~~~l 144 (284)
.|-.||=..+|. + .++.+.+..++...+ + . .-...-||-| +|||. .|-|.|++-+ ..+
T Consensus 88 ~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl-~HpH~Qi~a~-~~v 165 (329)
T cd00608 88 APARGRCEVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASL-PHPHGQIWAL-PFL 165 (329)
T ss_pred CCcceeEEEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCC-CCCCeeeeeC-CcC
Confidence 255555555554 3 666554443332222 2 2 2246778999 45555 7999999984 444
Q ss_pred ceeecCCc----c--------cc-----cCCC-CceEEEE-------c---cCCCeeEEEEEEec---------CCHHHH
Q 023281 145 PVELMPID----T--------FF-----SDGQ-RGIYIST-------L---IDYPIKTILFEYTY---------NNRIIM 187 (284)
Q Consensus 145 Pie~~~~~----~--------l~-----~~~~-~g~~~~~-------l---~~yp~~~f~~~~~~---------~~~e~~ 187 (284)
|-+-.... . ++ .... +...+++ + .-||-...++--.- .....+
T Consensus 166 p~~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~L 245 (329)
T cd00608 166 PPEVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDL 245 (329)
T ss_pred ChHHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHH
Confidence 42221110 0 00 0000 1111222 2 33455555543200 123455
Q ss_pred HHHHHHHHHHhhh---cCCCceEEEEe----C---C-----eEEEEEeccC-CCCCCcceecccc-eeeecChHHHhhcC
Q 023281 188 MEAISEICSSLRE---KNISYNLLISD----C---G-----KRIFLFLQKS-AISGNLLAWECGG-YFLFGSKYEFDQVT 250 (284)
Q Consensus 188 ~~~~~~~~~~L~~---~~~~~Nl~~~~----~---~-----~rv~ifPR~~-~~~~~pa~~ElaG-~li~~~~edf~~lT 250 (284)
+.++.++...|.. .+.++|+.+-. + + |.+.|+||.+ ..--+.|..||++ ..+ ..++
T Consensus 246 a~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~~~g~~i-------n~~~ 318 (329)
T cd00608 246 AEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFELGAGEFI-------NDVT 318 (329)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeeccCCCcc-------CCCC
Confidence 6666666655532 25689998741 1 1 6788999987 2223456677764 444 4678
Q ss_pred HHHHHHHHHhc
Q 023281 251 EEAIHKRLSAV 261 (284)
Q Consensus 251 e~~i~~il~ev 261 (284)
.|++.+.|+++
T Consensus 319 PE~aA~~LR~~ 329 (329)
T cd00608 319 PEQAAARLREV 329 (329)
T ss_pred HHHHHHHHhcC
Confidence 88888888864
No 27
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=96.82 E-value=0.19 Score=48.29 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=121.5
Q ss_pred EEcCccCCCccCCccc-------c-CCCcceeeecCCCccccccCCCcccCCCcEEEEEeCccCCC--------C-----
Q 023281 27 QLNEKWIMDPFILNSI-------D-QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEY--------G----- 85 (284)
Q Consensus 27 QlNp~R~~~~~k~~~~-------k-~~~~c~fc~~~~~~~~~~~~~~~~~~~~~~~vliN~~Pi~~--------g----- 85 (284)
=..|+|...+-++... . ....|.||..+..... ..- .-| +...|+=|.||-.. +
T Consensus 23 iia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~t~-~~~---~~w-~~~rv~~N~fPal~~~~~~~~~~~~~l~ 97 (346)
T PRK11720 23 LVSPHRAKRPWQGQQETPAKETLPAYDPDCFLCPGNTRVTG-DVN---PDY-TGTYVFTNDFAALMPDTPDAPESDDPLF 97 (346)
T ss_pred EEcCCccCCCCCCcccCCccccCCCCCCCCCCCCCCCCCCC-CCC---CCC-CEEEEEcCCCchhccCCCCCCcccCccc
Confidence 3557777666443211 1 1255999987644221 110 001 13679999999874 2
Q ss_pred --------eEEEeeccccc--C-CCChhHHHHHHHHHH----hc-C-CccceEEee----cCCCCCCceEEEEeecCCcc
Q 023281 86 --------HVFVVPCGSNR--L-YPDARSFEMIVRIAF----EI-N-NYSFRLFYD----CSSPGASHVYFQACYFPDHL 144 (284)
Q Consensus 86 --------H~l~vP~~~~~--~-~l~~~~~~~~~~~~~----~~-~-~~gf~vgyN----sgaa~~nHLHfh~~~~~~~l 144 (284)
|-.||=...|. + .++.+.+..++++.+ .. + -...-+|=| +|+|. .|=|-|++-++ .+
T Consensus 98 ~~~~~~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl-~HPH~Qi~a~p-~v 175 (346)
T PRK11720 98 RCQSARGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSN-PHPHGQIWANS-FL 175 (346)
T ss_pred ccCccceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCC-CCCceeeeeCC-CC
Confidence 54455455553 4 777665554443322 11 1 347788889 44444 79999999843 33
Q ss_pred ceeecCC-----------------cccccCCCC-ceEEEEc------cC----CCeeEEEEEEec---------CCHHHH
Q 023281 145 PVELMPI-----------------DTFFSDGQR-GIYISTL------ID----YPIKTILFEYTY---------NNRIIM 187 (284)
Q Consensus 145 Pie~~~~-----------------~~l~~~~~~-g~~~~~l------~~----yp~~~f~~~~~~---------~~~e~~ 187 (284)
|-+-... ..+...... ...|++- .+ ||-...++--.- .....+
T Consensus 176 P~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~L 255 (346)
T PRK11720 176 PNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDL 255 (346)
T ss_pred ChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHH
Confidence 3222211 001000011 1223322 22 455555432200 123455
Q ss_pred HHHHHHHHHHhh---hcCCCceEEEEeC-----C-----eEEEEEeccCCCC---CCcceecccceeeecChHHHhhcCH
Q 023281 188 MEAISEICSSLR---EKNISYNLLISDC-----G-----KRIFLFLQKSAIS---GNLLAWECGGYFLFGSKYEFDQVTE 251 (284)
Q Consensus 188 ~~~~~~~~~~L~---~~~~~~Nl~~~~~-----~-----~rv~ifPR~~~~~---~~pa~~ElaG~li~~~~edf~~lTe 251 (284)
+.++.++...|. ..+.++|+.+-.. + |.+-|+||-.|.+ =+.|..||+|..+- .+|.
T Consensus 256 a~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGfE~~g~~in-------~~~P 328 (346)
T PRK11720 256 ALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQR-------DLTA 328 (346)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeeeecccCccC-------CCCH
Confidence 566666666553 3566799976531 1 5677999965332 24688999998876 5899
Q ss_pred HHHHHHHHhc
Q 023281 252 EAIHKRLSAV 261 (284)
Q Consensus 252 ~~i~~il~ev 261 (284)
|++.+.|+++
T Consensus 329 E~aA~~LR~~ 338 (346)
T PRK11720 329 EQAAERLRAV 338 (346)
T ss_pred HHHHHHHhhc
Confidence 9999999997
No 28
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.54 E-value=0.051 Score=51.84 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHH---HHHhhhcCCCceEEEEe--CC-------eEEEEEeccC---CCCCCcceecccceeeecChHHHhhcC
Q 023281 186 IMMEAISEI---CSSLREKNISYNLLISD--CG-------KRIFLFLQKS---AISGNLLAWECGGYFLFGSKYEFDQVT 250 (284)
Q Consensus 186 ~~~~~~~~~---~~~L~~~~~~~Nl~~~~--~~-------~rv~ifPR~~---~~~~~pa~~ElaG~li~~~~edf~~lT 250 (284)
+++..+..+ |+.+..+..|||+++-. .+ +-+-++|+.. -..++.+..||.+-..+ ..+|
T Consensus 245 ~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~------~~~~ 318 (338)
T COG1085 245 DLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFI------RDVT 318 (338)
T ss_pred HHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceee------ccCC
Confidence 344444444 44556777789999873 11 5666888544 44567788898883332 3579
Q ss_pred HHHHHHHHHhccC
Q 023281 251 EEAIHKRLSAVSL 263 (284)
Q Consensus 251 e~~i~~il~evsl 263 (284)
+|++.+.|++++.
T Consensus 319 pEeaA~~LR~~~~ 331 (338)
T COG1085 319 PEEAAERLRERSA 331 (338)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998763
No 29
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=96.43 E-value=0.37 Score=46.25 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=122.8
Q ss_pred EEEcCccCCCccCCcc-----cc-C--CCcceeeecCCCccccccCCCcccCCCcEEEEEeCccCCC--------C----
Q 023281 26 AQLNEKWIMDPFILNS-----ID-Q--NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEY--------G---- 85 (284)
Q Consensus 26 ~QlNp~R~~~~~k~~~-----~k-~--~~~c~fc~~~~~~~~~~~~~~~~~~~~~~~vliN~~Pi~~--------g---- 85 (284)
|=..|.|+..+-++.. .. . ...|.||..+.... .+.- .-| +...|+=|.||... +
T Consensus 22 Viia~~R~~RP~~~~~~~~~~~~~~~~~~~CPfcpgne~~~-~~~~---~~w-~~~rV~~N~fPal~~~~~~~~~~~~~l 96 (347)
T TIGR00209 22 ILVSPHRAKRPWQGQQETPAKQVLPAYDPDCYLCPGNKRVT-GDLN---PDY-TGTYVFTNDFAALMSDTPDAPESHDPL 96 (347)
T ss_pred EEEeCCcccCCCCccccccccccCCCCCCCCCCCCCCCCCC-CCcC---CCC-ceEEEEeCCCcccccCCCCCCcCCCcc
Confidence 3456777766644321 11 1 23599998765432 1110 011 24679999999874 2
Q ss_pred ---------eEEEeeccccc--C-CCChhHHHHHHHHHH----h-c-CCccceEEee----cCCCCCCceEEEEeecCCc
Q 023281 86 ---------HVFVVPCGSNR--L-YPDARSFEMIVRIAF----E-I-NNYSFRLFYD----CSSPGASHVYFQACYFPDH 143 (284)
Q Consensus 86 ---------H~l~vP~~~~~--~-~l~~~~~~~~~~~~~----~-~-~~~gf~vgyN----sgaa~~nHLHfh~~~~~~~ 143 (284)
|=.||=...|. + .++.+.+..++++-+ . . .-...-+|=| +|+|. .|=|-|++-+ ..
T Consensus 97 ~~~~~~~G~~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl-~HPH~Qi~a~-p~ 174 (347)
T TIGR00209 97 MRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSN-PHPHGQIWAN-SF 174 (347)
T ss_pred cccCCCCeeEEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCC-CCCceeeeeC-CC
Confidence 54444444443 4 677655554433222 1 1 2247778889 34444 7999999984 33
Q ss_pred cceeecCC----c--------ccc-----cCC-CCceEEEE------ccC----CCeeEEEEEE---------ecCCHHH
Q 023281 144 LPVELMPI----D--------TFF-----SDG-QRGIYIST------LID----YPIKTILFEY---------TYNNRII 186 (284)
Q Consensus 144 lPie~~~~----~--------~l~-----~~~-~~g~~~~~------l~~----yp~~~f~~~~---------~~~~~e~ 186 (284)
+|-+-... + -++ ... .+...|++ +.+ +|-..+++-- +.....+
T Consensus 175 vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~ 254 (347)
T TIGR00209 175 LPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSD 254 (347)
T ss_pred CChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHH
Confidence 33322211 0 010 000 01112332 222 3555544321 0012345
Q ss_pred HHHHHHHHHHHhh---hcCCCceEEEEeC--------C--eEEEEEeccCCCCC---CcceecccceeeecChHHHhhcC
Q 023281 187 MMEAISEICSSLR---EKNISYNLLISDC--------G--KRIFLFLQKSAISG---NLLAWECGGYFLFGSKYEFDQVT 250 (284)
Q Consensus 187 ~~~~~~~~~~~L~---~~~~~~Nl~~~~~--------~--~rv~ifPR~~~~~~---~pa~~ElaG~li~~~~edf~~lT 250 (284)
++.++.++...|. ..+.|||+.+-.. - |-+-|+||-.|.+- +.|..||.|..+- .+|
T Consensus 255 La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~~g~~in-------~~~ 327 (347)
T TIGR00209 255 LALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLGETQR-------DLT 327 (347)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhhhcCccC-------CCC
Confidence 5566666665553 3456899987631 1 67889999664332 5789999998886 589
Q ss_pred HHHHHHHHHhcc
Q 023281 251 EEAIHKRLSAVS 262 (284)
Q Consensus 251 e~~i~~il~evs 262 (284)
.|++.+.|++++
T Consensus 328 PE~aA~~LR~~~ 339 (347)
T TIGR00209 328 AEQAAERLRALS 339 (347)
T ss_pred HHHHHHHHHhcc
Confidence 999999999984
No 30
>PLN02643 ADP-glucose phosphorylase
Probab=96.08 E-value=0.95 Score=43.25 Aligned_cols=225 Identities=17% Similarity=0.200 Sum_probs=119.1
Q ss_pred EEcCccCCCccCCcc-----c--cCCCcceeeecCCCccccccC--CCcccC-CCcEEEEEeCccCCC-----------C
Q 023281 27 QLNEKWIMDPFILNS-----I--DQNEELLFCVTRSEKANSELI--PSAAVP-NDSILVIINANPIEY-----------G 85 (284)
Q Consensus 27 QlNp~R~~~~~k~~~-----~--k~~~~c~fc~~~~~~~~~~~~--~~~~~~-~~~~~vliN~~Pi~~-----------g 85 (284)
=..|.|+..+.++.. . .....|.||..+......+.+ ++.... +=.+.|+-|+||-.. |
T Consensus 15 iia~~R~~RP~~~~~~~~~~~~~~~~~~CPfCpgne~~t~~ei~~~~~~~~~~~w~vrv~~N~fPal~~~~~~~~~~~~~ 94 (336)
T PLN02643 15 IFSPARGKRPTDFKSKSPQNPNGNHSSGCPFCIGHEHECAPEIFRVPDDASAPDWKVRVIENLYPALSRDLEPPCTEGQG 94 (336)
T ss_pred EEcCCcccCCCCCcccCCcCCCCCCCCCCCCCCCCCCCCCcceeeccCCCCCCCCeEEEEeCCCccccCCCCCCcccccC
Confidence 356777776643321 1 112459999876543212211 000000 124899999999773 1
Q ss_pred -------------eEEEeeccccc--C-CCChhHHHHHHHHHH----h-cC---CccceEEee----cCCCCCCceEEEE
Q 023281 86 -------------HVFVVPCGSNR--L-YPDARSFEMIVRIAF----E-IN---NYSFRLFYD----CSSPGASHVYFQA 137 (284)
Q Consensus 86 -------------H~l~vP~~~~~--~-~l~~~~~~~~~~~~~----~-~~---~~gf~vgyN----sgaa~~nHLHfh~ 137 (284)
|-.||-...|. + .++.+.+..++++.+ . .+ -...-+|-| +|||. .|-|-|+
T Consensus 95 ~~~~~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl-~HPH~Qi 173 (336)
T PLN02643 95 EDYGGRRLPGFGFHDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASM-SHSHSQI 173 (336)
T ss_pred cchhhcccceeeEEEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCC-CCCceee
Confidence 44455555553 3 666655554433322 1 12 236788999 45555 7999999
Q ss_pred eecCCccceeecCCc----c--------cccCCCCce-EEEE------cc----CCCeeEEEEEEe---------cCCHH
Q 023281 138 CYFPDHLPVELMPID----T--------FFSDGQRGI-YIST------LI----DYPIKTILFEYT---------YNNRI 185 (284)
Q Consensus 138 ~~~~~~lPie~~~~~----~--------l~~~~~~g~-~~~~------l~----~yp~~~f~~~~~---------~~~~e 185 (284)
+-+ ..+|-+-.... . ++-+-..+. .|++ +. -||....++--. .....
T Consensus 174 ~a~-~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~ 252 (336)
T PLN02643 174 IAL-PVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKDLLIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAV 252 (336)
T ss_pred Eec-CcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCccEEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHH
Confidence 994 43433222110 0 000000000 1222 22 235555544320 01234
Q ss_pred HHHHHHHHHHHHhhh--cCCCceEEEEeC---------C---eEEEEEeccCCCCCCcceeccc-ceeeecChHHHhhcC
Q 023281 186 IMMEAISEICSSLRE--KNISYNLLISDC---------G---KRIFLFLQKSAISGNLLAWECG-GYFLFGSKYEFDQVT 250 (284)
Q Consensus 186 ~~~~~~~~~~~~L~~--~~~~~Nl~~~~~---------~---~rv~ifPR~~~~~~~pa~~Ela-G~li~~~~edf~~lT 250 (284)
.++..+.++...|.. ...+||+.+-.+ . |.+-|+||-+ +.|-.||+ |..+- .+|
T Consensus 253 ~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~----~~aGfElg~g~~in-------~~~ 321 (336)
T PLN02643 253 DLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS----GVGGFELGTGCYIN-------PVF 321 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcC----CccceeccCCCeeC-------CCC
Confidence 556666666655532 233899987531 1 4678999975 24555775 54554 589
Q ss_pred HHHHHHHHHhccCC
Q 023281 251 EEAIHKRLSAVSLN 264 (284)
Q Consensus 251 e~~i~~il~evsl~ 264 (284)
.|++.+.|+++.++
T Consensus 322 PE~aA~~LR~~~~~ 335 (336)
T PLN02643 322 PEDAAKVLREVNLP 335 (336)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999998774
No 31
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=93.28 E-value=0.14 Score=44.03 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=48.1
Q ss_pred CcEEEEEeCccCCCCeEEEeecccccC---CCChhHHHHH-----------HHHHHhcCCccceEEeecCCCCCCceEEE
Q 023281 71 DSILVIINANPIEYGHVFVVPCGSNRL---YPDARSFEMI-----------VRIAFEINNYSFRLFYDCSSPGASHVYFQ 136 (284)
Q Consensus 71 ~~~~vliN~~Pi~~gH~l~vP~~~~~~---~l~~~~~~~~-----------~~~~~~~~~~gf~vgyNsgaa~~nHLHfh 136 (284)
+.+.||=..||=...|+|+.|++..-. ..-++-+.+. .++..+.....|+|||-|+-|. +|||+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~HavPSM-~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAVPSM-NNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeeccCcch-hheeEE
Confidence 467888889999999999999755422 2233333322 1222221224899999966655 799999
Q ss_pred EeecCCccc
Q 023281 137 ACYFPDHLP 145 (284)
Q Consensus 137 ~~~~~~~lP 145 (284)
+...+...|
T Consensus 102 VISkDf~S~ 110 (184)
T KOG0562|consen 102 VISKDFVSP 110 (184)
T ss_pred EeecccCCc
Confidence 999544444
No 32
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=90.33 E-value=0.41 Score=41.16 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=41.3
Q ss_pred CcceeeecCC-CccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCCh-hHHHHHHHHHH----h---
Q 023281 46 EELLFCVTRS-EKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDA-RSFEMIVRIAF----E--- 113 (284)
Q Consensus 46 ~~c~fc~~~~-~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~-~~~~~~~~~~~----~--- 113 (284)
..|+||..-. +.++.+. ++. ++++.+++=-+.--|.-++++|.+|.. + .+++ +..+++ .+++ .
T Consensus 13 Gs~L~~D~~~~E~~~~~R----iv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA-~~l~~i~~r~d~ 87 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGER----IVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLA-AILKPILRRYDN 87 (166)
T ss_dssp SS-HHHHHHHHHHHH-TT----EEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHH-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCE----EEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHH-HHHHHHHHHhcc
Confidence 6799996433 2222333 445 666777776677788889999999996 4 6665 444443 2222 2
Q ss_pred -cC-CccceEEee-c--CCCCC-CceEEEEee
Q 023281 114 -IN-NYSFRLFYD-C--SSPGA-SHVYFQACY 139 (284)
Q Consensus 114 -~~-~~gf~vgyN-s--gaa~~-nHLHfh~~~ 139 (284)
.. +..|++|.. + .+... .++|+|...
T Consensus 88 lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 88 LFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp HCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred cCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 22 457888886 1 22222 448888876
No 33
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=75.16 E-value=14 Score=35.42 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCCcceeeecCCC-ccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHH-HHHHHHHHh----c
Q 023281 44 QNEELLFCVTRSE-KANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSF-EMIVRIAFE----I 114 (284)
Q Consensus 44 ~~~~c~fc~~~~~-~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~-~~~~~~~~~----~ 114 (284)
..+.|++|..-.. +.+.+. ++. +++...++=-++--|-++.+.|.+|.. + .++++.. +++ .+.+. .
T Consensus 183 ~~~~~~~~~~ve~E~~~~~R----~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA-~ilk~~~~~y 257 (338)
T COG1085 183 ENGSCMYCDLVEREKGDGER----IVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLA-EILKKLLARY 257 (338)
T ss_pred hcCCchHHHHHHHHhccCce----EEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHH-HHHHHHHHHH
Confidence 4678999954322 111233 344 666777776667778899999999996 4 6666543 343 33332 1
Q ss_pred ----CCc-cceEEee-c-CCCCC--CceEEEEeecCCccceeecCCcccccCCCCceEEEEccCCCeeEEEEEEecCCHH
Q 023281 115 ----NNY-SFRLFYD-C-SSPGA--SHVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRI 185 (284)
Q Consensus 115 ----~~~-gf~vgyN-s-gaa~~--nHLHfh~~~~~~~lPie~~~~~~l~~~~~~g~~~~~l~~yp~~~f~~~~~~~~~e 185 (284)
.++ -+++|+= . ..... .|+|.|++. |+=+..+. ..-+.+|...+=.+.. ....|
T Consensus 258 ~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p-----~~~R~~t~-----------~k~~~g~e~~~~e~~~-~~~pE 320 (338)
T COG1085 258 DNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP-----PLLRSATK-----------LKFLAGYEMGAGEFIR-DVTPE 320 (338)
T ss_pred hhccCCCCceeeeeecCCCCcccccceEEEEEcc-----cccccccc-----------cceeeeeecccceeec-cCCHH
Confidence 111 2555555 1 12112 566766666 21111111 1122444443312222 14678
Q ss_pred HHHHHHHHHHHHhh
Q 023281 186 IMMEAISEICSSLR 199 (284)
Q Consensus 186 ~~~~~~~~~~~~L~ 199 (284)
++++.+..+..-.+
T Consensus 321 eaA~~LR~~~~~~~ 334 (338)
T COG1085 321 EAAERLRERSAEIH 334 (338)
T ss_pred HHHHHHHHhhhccc
Confidence 88887777765433
No 34
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=74.96 E-value=9.6 Score=34.47 Aligned_cols=68 Identities=6% Similarity=0.079 Sum_probs=37.8
Q ss_pred EEEEeCccCCCCeEEEeeccccc-C----CC---ChhHHHHHH----HHHHh----cCCccceEEeecCCCCC-CceEEE
Q 023281 74 LVIINANPIEYGHVFVVPCGSNR-L----YP---DARSFEMIV----RIAFE----INNYSFRLFYDCSSPGA-SHVYFQ 136 (284)
Q Consensus 74 ~vliN~~Pi~~gH~l~vP~~~~~-~----~l---~~~~~~~~~----~~~~~----~~~~gf~vgyNsgaa~~-nHLHfh 136 (284)
+|++. =|-.+.|.|+||..... . ++ ++.+...++ .+.+. .....+-++.||-.+=. ||||.|
T Consensus 35 yvvlK-d~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRsQdQLHIH 113 (222)
T PF02611_consen 35 YVVLK-DRNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGRSQDQLHIH 113 (222)
T ss_dssp EEEEE--SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG-S--S--EE
T ss_pred EEEEe-CCCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCccccceEeE
Confidence 55555 48899999999999883 3 33 346666666 22232 24568999999755543 999999
Q ss_pred EeecCC
Q 023281 137 ACYFPD 142 (284)
Q Consensus 137 ~~~~~~ 142 (284)
+-.++.
T Consensus 114 isClrp 119 (222)
T PF02611_consen 114 ISCLRP 119 (222)
T ss_dssp EEEB-H
T ss_pred hhhcCH
Confidence 999764
No 35
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.79 E-value=14 Score=37.33 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=48.9
Q ss_pred CcceeeecCCCccccccCCCcccCCCc-EEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHH------HHHHHhcCC
Q 023281 46 EELLFCVTRSEKANSELIPSAAVPNDS-ILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMI------VRIAFEINN 116 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~~~~-~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~------~~~~~~~~~ 116 (284)
+.|.+|..+..-. ..++ |..+.. ++.|.=-=|+..||++|||.-|.. - .++++.-+.+ +-++..+.+
T Consensus 407 D~C~rCfds~klp-khlv---iSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n 482 (628)
T KOG2477|consen 407 DTCPRCFDSEKLP-KHLV---ISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMN 482 (628)
T ss_pred hhchhhhcccccc-ccee---EEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 5799998654322 1221 112444 444555557999999999999983 3 7777655443 233333444
Q ss_pred ccceEEee-cCCCCC-CceEEEEee
Q 023281 117 YSFRLFYD-CSSPGA-SHVYFQACY 139 (284)
Q Consensus 117 ~gf~vgyN-sgaa~~-nHLHfh~~~ 139 (284)
.+. |||- +-+-.- -|+-.|.+.
T Consensus 483 ~dv-iFyE~a~~l~rrpH~~IeCIP 506 (628)
T KOG2477|consen 483 LDV-IFYENAPSLQRRPHTAIECIP 506 (628)
T ss_pred CCe-EEEeccCccccCCceeEEEee
Confidence 343 4554 322221 455555554
No 36
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=65.98 E-value=8.7 Score=35.35 Aligned_cols=68 Identities=7% Similarity=0.101 Sum_probs=47.1
Q ss_pred EEEEeCccCCCCeEEEeeccccc-C----CCC---hhHHHHHHH---HHH-h----cCCccceEEeecCCCCC-CceEEE
Q 023281 74 LVIINANPIEYGHVFVVPCGSNR-L----YPD---ARSFEMIVR---IAF-E----INNYSFRLFYDCSSPGA-SHVYFQ 136 (284)
Q Consensus 74 ~vliN~~Pi~~gH~l~vP~~~~~-~----~l~---~~~~~~~~~---~~~-~----~~~~gf~vgyNsgaa~~-nHLHfh 136 (284)
+|++. =+..+.|.|++|..... . +++ +.+...++. ++. . ..+...-+..||-.+=. ||||.|
T Consensus 64 yvvlK-D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIH 142 (252)
T PRK05471 64 YVLLK-DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHIH 142 (252)
T ss_pred eEEEe-cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceeee
Confidence 44444 67889999999999883 2 443 456666653 222 2 24567899999855554 999999
Q ss_pred EeecCC
Q 023281 137 ACYFPD 142 (284)
Q Consensus 137 ~~~~~~ 142 (284)
+-.++.
T Consensus 143 IsClrp 148 (252)
T PRK05471 143 ISCLRP 148 (252)
T ss_pred hhhCCH
Confidence 998763
No 37
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=65.74 E-value=14 Score=34.00 Aligned_cols=62 Identities=10% Similarity=0.028 Sum_probs=43.3
Q ss_pred cCCCCeEEEeeccccc-C----CCC---hhHHHHHH---HHHH-h----cCCccceEEeecCCCCC-CceEEEEeecCC
Q 023281 81 PIEYGHVFVVPCGSNR-L----YPD---ARSFEMIV---RIAF-E----INNYSFRLFYDCSSPGA-SHVYFQACYFPD 142 (284)
Q Consensus 81 Pi~~gH~l~vP~~~~~-~----~l~---~~~~~~~~---~~~~-~----~~~~gf~vgyNsgaa~~-nHLHfh~~~~~~ 142 (284)
+..+.|.|++|..... . +++ +++...++ .++. . ..+...-+..||-.|=. ||||.|+-.++.
T Consensus 69 ~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsClrp 147 (250)
T TIGR00672 69 LNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHIHISCIRP 147 (250)
T ss_pred CCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcccccceeeHhhCCH
Confidence 4789999999999883 2 333 45566665 2222 2 24457899999865554 999999998764
No 38
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=47.76 E-value=41 Score=32.34 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCc------eEEEEeCC------eEEEEEeccC------CCCCC-----------------
Q 023281 184 RIIMMEAISEICSSLREKNISY------NLLISDCG------KRIFLFLQKS------AISGN----------------- 228 (284)
Q Consensus 184 ~e~~~~~~~~~~~~L~~~~~~~------Nl~~~~~~------~rv~ifPR~~------~~~~~----------------- 228 (284)
...+.+.+...+.+|+..||+| ||+.+..+ ..=|=|.... .+.|+
T Consensus 163 a~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydk 242 (400)
T KOG0604|consen 163 ASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDK 242 (400)
T ss_pred HHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCC
Confidence 4456677888888999999998 99998533 1222233222 12222
Q ss_pred ------cc---eecccceeeecChHHHhhcCHHHHHHHHH-hccCChHHHHHHHHHHHhhhhhh
Q 023281 229 ------LL---AWECGGYFLFGSKYEFDQVTEEAIHKRLS-AVSLNDEGFQVVKQLCCSIASKL 282 (284)
Q Consensus 229 ------pa---~~ElaG~li~~~~edf~~lTe~~i~~il~-evsl~~~~f~~l~~~~~~~~~~~ 282 (284)
+| ..=|||+-++.+..- ..|+..-=.+|.. +..++++++..|.+.-+++-++|
T Consensus 243 scdmwSlgVimYIlLCGyPPFYS~hg-~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~L 305 (400)
T KOG0604|consen 243 SCDMWSLGVIMYILLCGYPPFYSNHG-LAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKL 305 (400)
T ss_pred CCCccchhHHHHHhhcCCCcccccCC-ccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHH
Confidence 12 123689888888877 7777776666663 78899999999988888777665
No 39
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.18 E-value=45 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=30.7
Q ss_pred ChHHHhhcCHHHHHHHHH----hccCChHHHHHHHHHHHhh
Q 023281 242 SKYEFDQVTEEAIHKRLS----AVSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 242 ~~edf~~lTe~~i~~il~----evsl~~~~f~~l~~~~~~~ 278 (284)
..++|+....+++.+|++ .-++|..+++.+.+-+-+|
T Consensus 29 ~~e~~d~~~~edLtdiy~mvkkkenfSpsEmqaiA~eL~rl 69 (71)
T COG4840 29 DPEKYDNANYEDLTDIYDMVKKKENFSPSEMQAIADELGRL 69 (71)
T ss_pred CHHhcccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 578999999999999885 4589999999888777654
No 40
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=37.59 E-value=43 Score=31.96 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=45.6
Q ss_pred ecccceeeecChHHHhhcCHHHHHHHHHhccC-ChHHHHHHHHHHHhhhhhhcC
Q 023281 232 WECGGYFLFGSKYEFDQVTEEAIHKRLSAVSL-NDEGFQVVKQLCCSIASKLAV 284 (284)
Q Consensus 232 ~ElaG~li~~~~edf~~lTe~~i~~il~evsl-~~~~f~~l~~~~~~~~~~~~~ 284 (284)
++-+=+|++..-=-||++-|++|.+|+.++.- ...+.|.+.+++...|+.|+.
T Consensus 243 v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~ 296 (330)
T KOG1379|consen 243 VQKGDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSR 296 (330)
T ss_pred ccCCCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhcc
Confidence 44566788888888999999999999998766 788999999999999998863
No 41
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=37.46 E-value=68 Score=26.75 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=45.8
Q ss_pred eCCeEEEEEeccCCCCCCcceecccceeeecChHH---Hh------hcCHHHHHHHHHhc-cCChHHHHHHHHHHHhhhh
Q 023281 211 DCGKRIFLFLQKSAISGNLLAWECGGYFLFGSKYE---FD------QVTEEAIHKRLSAV-SLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 211 ~~~~rv~ifPR~~~~~~~pa~~ElaG~li~~~~ed---f~------~lTe~~i~~il~ev-sl~~~~f~~l~~~~~~~~~ 280 (284)
..|..-++.|=.- -+-..|++-.+++++-...++ +. .++++++.+.++++ .+|+++++.+.+.+..+|+
T Consensus 81 ~~GL~~~~~PI~~-~g~~iG~i~~G~v~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~ip~~~~~~l~~~~~ll~~~a~ 159 (173)
T PF10114_consen 81 HAGLVDIAVPIIV-DGEYIGYIICGQVLLEDPDDESELIRELAKKYGIDPEELLEAYEQIPVISEEQLQAIAELLQILAN 159 (173)
T ss_pred CcCceeeeeeEEE-CCEEEEEEEEEEeecCCCchhHHHHHHHHHHcCCCHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHH
Confidence 4455555444333 334567885555555433222 22 45666778888776 5689999999999999998
Q ss_pred hhc
Q 023281 281 KLA 283 (284)
Q Consensus 281 ~~~ 283 (284)
.++
T Consensus 160 ~i~ 162 (173)
T PF10114_consen 160 YIS 162 (173)
T ss_pred HHH
Confidence 764
No 42
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=37.37 E-value=56 Score=26.12 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=23.1
Q ss_pred hHHHhhcCHHHHHHHHHhccCChHHHHHHHHHH
Q 023281 243 KYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLC 275 (284)
Q Consensus 243 ~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~ 275 (284)
++.||++|.+++.+.+.+ +|+|+.++|.+.+
T Consensus 72 e~a~~~~~~~~lqkRle~--l~~eE~~~L~~ei 102 (104)
T PF11460_consen 72 EEAVDQLTNEELQKRLEE--LSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHhHHHHHHHHHh--CCHHHHHHHHHHh
Confidence 566788888888888876 5678877776554
No 43
>PHA02698 hypothetical protein; Provisional
Probab=35.78 E-value=71 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=27.9
Q ss_pred hHHHhhcCHHHHHHHHH----------hc-cCChHHHHHHHHHHHhhhhhhc
Q 023281 243 KYEFDQVTEEAIHKRLS----------AV-SLNDEGFQVVKQLCCSIASKLA 283 (284)
Q Consensus 243 ~edf~~lTe~~i~~il~----------ev-sl~~~~f~~l~~~~~~~~~~~~ 283 (284)
.|.-+..|.++....|. |+ .||+++++++-.-+.++|+.|.
T Consensus 35 peeV~~CsPEdMs~mLD~FLediq~ksElqLLsqEEMdELl~EledlarLL~ 86 (89)
T PHA02698 35 PEEVPQCSPEDMSDMLDNFLEDIQYKSELQLLSQEEMDELLVELEDLARLLS 86 (89)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 44455555555544332 33 4689999999999999998873
No 44
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=35.19 E-value=63 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=34.5
Q ss_pred hHHHhhcCHHHHHHHHHhccC-ChHHHHHHHHHHHhhhhhh
Q 023281 243 KYEFDQVTEEAIHKRLSAVSL-NDEGFQVVKQLCCSIASKL 282 (284)
Q Consensus 243 ~edf~~lTe~~i~~il~evsl-~~~~f~~l~~~~~~~~~~~ 282 (284)
.+.++.+.++.+.++|....+ |.+++++|.++|-.+...+
T Consensus 72 ~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 72 WDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999887 5899999999998887765
No 45
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=31.65 E-value=65 Score=28.50 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=28.4
Q ss_pred cceeeecChHHHh-hcCHHHHHHHHHhc-cCChHHHHHHHHHHHhh
Q 023281 235 GGYFLFGSKYEFD-QVTEEAIHKRLSAV-SLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 235 aG~li~~~~edf~-~lTe~~i~~il~ev-sl~~~~f~~l~~~~~~~ 278 (284)
+|++.+|+++||+ .-+...+.+-|+-. .++-++=-+|-+.+.++
T Consensus 114 g~li~~Ps~~Df~npe~~~~l~kYl~g~~~~~aeeR~rl~rLawDl 159 (205)
T PF03241_consen 114 GGLITLPSEADFDNPEIGPYLDKYLQGANGVSAEERVRLFRLAWDL 159 (205)
T ss_dssp GGGTC---HHHHH-TTTHHHHHHHT-BTTTC-HHHHHHHHHHHHHH
T ss_pred CCeeeCCCHHHhCCcchhHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 6788999999999 57888888888877 78766655554444443
No 46
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=28.04 E-value=61 Score=30.75 Aligned_cols=91 Identities=11% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCccee-----eecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeecccccC--CCCh-hHHHHHHHHHHhc
Q 023281 44 QNEELLF-----CVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNRL--YPDA-RSFEMIVRIAFEI 114 (284)
Q Consensus 44 ~~~~c~f-----c~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~~--~l~~-~~~~~~~~~~~~~ 114 (284)
...+|+| |+.-+... ++- ++++.+++=-.-+=|.-.|+||.+|... .+++ +-.+++ .+++..
T Consensus 197 ~hgk~ll~dy~~~E~l~Ker--------vv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLa-siLK~l 267 (354)
T KOG2958|consen 197 EHGKCLLMDYVKQEALEKER--------VVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLA-SILKLL 267 (354)
T ss_pred HcCCchHHHHHHHHHhhhce--------EEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHH-HHHHHH
Q ss_pred ---------CCccceEEee-----cCCCCC-CceEEEEeecCCcc
Q 023281 115 ---------NNYSFRLFYD-----CSSPGA-SHVYFQACYFPDHL 144 (284)
Q Consensus 115 ---------~~~gf~vgyN-----sgaa~~-nHLHfh~~~~~~~l 144 (284)
...-|++|.- +-+... ||. ||+-+.+-.+
T Consensus 268 l~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W-~h~hFyppll 311 (354)
T KOG2958|consen 268 LIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHW-LHMHFYPPLL 311 (354)
T ss_pred HHHHHHhhccCCccccccccCCcccccccccchh-hhhhccccch
No 47
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=27.73 E-value=1.4e+02 Score=24.32 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=34.3
Q ss_pred cChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhhhhh
Q 023281 241 GSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASK 281 (284)
Q Consensus 241 ~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~~~~ 281 (284)
|+.++.-+++++++.+.++.+.++....+.|.+....+.+.
T Consensus 22 ~~~~~l~~~~~~eL~~~l~~~g~~~~ka~~i~~~a~~~~~~ 62 (149)
T smart00478 22 PTPEDLAAADEEELEELIRPLGFYRRKAKYLIELARILVEE 62 (149)
T ss_pred CCHHHHHCCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999988888888777666553
No 48
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=25.41 E-value=1.1e+02 Score=24.14 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.6
Q ss_pred HHHHHHh--ccCChHHHHHHHHHHHhhhhh
Q 023281 254 IHKRLSA--VSLNDEGFQVVKQLCCSIASK 281 (284)
Q Consensus 254 i~~il~e--vsl~~~~f~~l~~~~~~~~~~ 281 (284)
+.+.|++ +.|+++++++|.+.+...+.|
T Consensus 21 A~~RL~~R~I~l~~~~~~~i~~av~~A~~K 50 (96)
T TIGR02530 21 ALERMRERNISINPDDWKKLLEAVEEAESK 50 (96)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHhc
Confidence 4555654 999999999999999887765
No 49
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=24.91 E-value=1.8e+02 Score=29.37 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=68.4
Q ss_pred EEEccCCCeeEEEEEEecCCHHHHHHHHHHHHHHhhhcCCC--ceEEEEeCCeEEEEEeccCCCCCCcceecccceeeec
Q 023281 164 ISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNIS--YNLLISDCGKRIFLFLQKSAISGNLLAWECGGYFLFG 241 (284)
Q Consensus 164 ~~~l~~yp~~~f~~~~~~~~~e~~~~~~~~~~~~L~~~~~~--~Nl~~~~~~~rv~ifPR~~~~~~~pa~~ElaG~li~~ 241 (284)
+..|.++--. ||.-..+++.|.+..--.-=...|..+... -|+=+--+...+.+|=+-+ -..-||++++|-|+--
T Consensus 104 ~~~Ls~~aGD-FVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~--v~~T~cl~IGGRLi~~ 180 (473)
T PF06277_consen 104 LHALSGFAGD-FVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE--VIDTACLDIGGRLIEF 180 (473)
T ss_pred HHHHHHhcCC-EEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--EEEEEEEeeccEEEEE
Confidence 4444444332 455555577777643222222222222221 1444433334566665444 1235789999999987
Q ss_pred ChHHHhhcCHHHHHHHHHhccCC-----hHHHHHHHHHHHhhhhhhc
Q 023281 242 SKYEFDQVTEEAIHKRLSAVSLN-----DEGFQVVKQLCCSIASKLA 283 (284)
Q Consensus 242 ~~edf~~lTe~~i~~il~evsl~-----~~~f~~l~~~~~~~~~~~~ 283 (284)
+.+.--.-=.+.+.+++++..++ .-..++|++.|..||+.|.
T Consensus 181 d~~g~i~yis~~~~~l~~~~~~~~~~G~~~~~~~l~~i~~~Ma~~l~ 227 (473)
T PF06277_consen 181 DPDGRITYISPPIQRLLEELGLELSVGDRADPEQLRKICRRMAELLV 227 (473)
T ss_pred cCCCcEEEECHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 76554455566788888876554 5567788899999998763
No 50
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=24.85 E-value=1.4e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=30.3
Q ss_pred ChHHHhhcCHHHHHHHHH----hccCChHHHHHHHHHHHhh
Q 023281 242 SKYEFDQVTEEAIHKRLS----AVSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 242 ~~edf~~lTe~~i~~il~----evsl~~~~f~~l~~~~~~~ 278 (284)
+.++|+....+++.+++. +-++|..+++.+.+-+-+|
T Consensus 29 ~~~~f~~~~yedl~diy~~V~~K~~fS~sEm~aI~~ELG~L 69 (71)
T PF06569_consen 29 KPEDFSEEKYEDLKDIYEMVMSKDSFSPSEMQAIAEELGQL 69 (71)
T ss_pred CHHhCChhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 578899999999999886 4589999999888776554
No 51
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=23.63 E-value=45 Score=29.83 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=24.8
Q ss_pred cceeeCCcee----EEEeeCceeEEEEEcCccCCCccC
Q 023281 5 CFRYDVTASE----IKVISGGKKFLAQLNEKWIMDPFI 38 (284)
Q Consensus 5 ~frY~l~~~~----tr~l~g~~~f~~QlNp~R~~~~~k 38 (284)
.|+++++ || |.+-+|.|.|++..||++.+.-..
T Consensus 142 tY~~~id-cQWiDITdvp~G~Y~l~V~vNP~~~v~Esd 178 (205)
T PF01186_consen 142 TYRHDID-CQWIDITDVPPGTYILQVTVNPEYRVAESD 178 (205)
T ss_pred cccCCCC-ccceeecCCCCccEEEEEecCCcccccccc
Confidence 4677777 44 455589999999999998876543
No 52
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.32 E-value=1.6e+02 Score=17.97 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=17.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHH
Q 023281 253 AIHKRLSAVSLNDEGFQVVKQLCC 276 (284)
Q Consensus 253 ~i~~il~evsl~~~~f~~l~~~~~ 276 (284)
.+.+.+..=-+|+++|++.++.+.
T Consensus 7 ~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 344555555789999999988875
No 53
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=22.69 E-value=76 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=35.2
Q ss_pred cceecccceeeecChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhhhh
Q 023281 229 LLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 229 pa~~ElaG~li~~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~~~ 280 (284)
||.||.+ ...|+.+++.-..+.=++...+++-|..|-++|.++.+
T Consensus 5 ~GYCE~C-------r~kfd~l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~~l~r 49 (49)
T smart00586 5 PGYCENC-------REKYDDLETHLLSEKHRRFAENNDNFQALDDLISQLRR 49 (49)
T ss_pred CcccccH-------hHHHhhHHHHhccHHHHHHHcCchhHHHHHHHHHHhcC
Confidence 6777776 45688888877777777888888899999888887753
No 54
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=22.42 E-value=1.2e+02 Score=22.95 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.9
Q ss_pred hcCHHHHHHHHHhccCChHHHHHHHHHHHhhhhh
Q 023281 248 QVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASK 281 (284)
Q Consensus 248 ~lTe~~i~~il~evsl~~~~f~~l~~~~~~~~~~ 281 (284)
-+|-+++.++++..+.++++++.++-..-.|.|+
T Consensus 39 ~~T~~Qv~~il~~f~fd~~kl~~lk~l~p~i~D~ 72 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDNDKLKALKLLYPYIVDP 72 (95)
T ss_pred ceeHHHHHHHHHHcCCCHHHHHHHHHHhhhccCH
Confidence 3899999999999999999999888877766654
No 55
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=22.31 E-value=1.6e+02 Score=22.34 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=23.5
Q ss_pred cCHHHHHHHHH--hccCChHHHHHHHHHHHhhhh
Q 023281 249 VTEEAIHKRLS--AVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 249 lTe~~i~~il~--evsl~~~~f~~l~~~~~~~~~ 280 (284)
+|.+++..+-+ ...+++++.+++.+.+.+|-+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~ 34 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILG 34 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 46677776654 678899998888887766643
No 56
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=22.21 E-value=1.9e+02 Score=25.96 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=36.4
Q ss_pred cChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhhhhh
Q 023281 241 GSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSIASK 281 (284)
Q Consensus 241 ~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~~~~ 281 (284)
++.||+-.++++++.+.++.+++-......|++.+..|-++
T Consensus 59 ~t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~ 99 (211)
T COG0177 59 PTPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEK 99 (211)
T ss_pred CCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999988888888777654
No 57
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=20.76 E-value=1e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=35.1
Q ss_pred ecccceeeecChHHHhhcCHHHHHHHHHhccCChHHHHHHHHHHHhh
Q 023281 232 WECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 232 ~ElaG~li~~~~edf~~lTe~~i~~il~evsl~~~~f~~l~~~~~~~ 278 (284)
++..| .|+.++.-.++++++.+.++.+.++...-+.|.+....+
T Consensus 22 ~~~~g---~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~~~a~~~ 65 (108)
T PF00730_consen 22 FERYG---FPTPEALAEASEEELRELIRPLGFSRRKAKYIIELARAI 65 (108)
T ss_dssp HHHHS---CSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHHHHHHHh
Confidence 44445 678899999999999999999999877777776665544
No 58
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.32 E-value=1.8e+02 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=25.0
Q ss_pred hcCHHHHHHHHH--hccCChHHHHHHHHHHHhhhh
Q 023281 248 QVTEEAIHKRLS--AVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 248 ~lTe~~i~~il~--evsl~~~~f~~l~~~~~~~~~ 280 (284)
++|.+++.++-+ .+.+++++.+++.+.+.+|-+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~ 36 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLNKILD 36 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 478888887765 678889998888877766643
No 59
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=2.7e+02 Score=26.27 Aligned_cols=57 Identities=7% Similarity=0.196 Sum_probs=33.2
Q ss_pred eEEEeecccc--cC-CCChhHHHHHHHHHHh----------cCCccceEEeecCCCCCCceEEEEeecCCc
Q 023281 86 HVFVVPCGSN--RL-YPDARSFEMIVRIAFE----------INNYSFRLFYDCSSPGASHVYFQACYFPDH 143 (284)
Q Consensus 86 H~l~vP~~~~--~~-~l~~~~~~~~~~~~~~----------~~~~gf~vgyNsgaa~~nHLHfh~~~~~~~ 143 (284)
|+|.|=+++. .+ .|+.+-++++..+-.+ .++..++|++--.-|+ =|||.|++.++++
T Consensus 190 yllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HYqPSy-YHlHVHi~nik~~ 259 (310)
T KOG3969|consen 190 YLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMFFHYQPSY-YHLHVHIVNIKHD 259 (310)
T ss_pred eEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEEEEecCce-EEEEEEEEeccCC
Confidence 4444444444 23 5665555555333221 2455777777733333 5999999998776
Done!