Query 023281
Match_columns 284
No_of_seqs 170 out of 462
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:11:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1s_A HIT-like protein HINT; 99.5 5.3E-14 1.8E-18 113.0 7.8 93 46-144 3-110 (119)
2 3ano_A AP-4-A phosphorylase; d 99.5 7E-14 2.4E-18 123.9 7.1 90 46-139 69-173 (218)
3 4egu_A Histidine triad (HIT) p 99.4 6.7E-14 2.3E-18 112.0 5.6 90 45-139 3-107 (119)
4 3oj7_A Putative histidine tria 99.4 1.8E-13 6.2E-18 109.3 6.8 92 47-144 8-112 (117)
5 3r6f_A HIT family protein; str 99.4 2.6E-13 8.9E-18 111.2 4.8 88 45-139 5-100 (135)
6 3lb5_A HIT-like protein involv 99.4 7.7E-13 2.6E-17 111.8 7.5 90 45-139 27-130 (161)
7 3o0m_A HIT family protein; ssg 99.4 8.9E-13 3E-17 109.8 7.6 90 45-139 4-108 (149)
8 3o1c_A Histidine triad nucleot 99.4 5.1E-13 1.8E-17 108.2 5.9 95 44-144 13-121 (126)
9 3imi_A HIT family protein; str 99.3 8.8E-13 3E-17 109.5 6.1 90 45-139 8-111 (147)
10 3l7x_A SMU.412C, putative HIT- 99.3 1.3E-12 4.5E-17 111.7 7.3 91 44-139 34-138 (173)
11 1y23_A HIT, histidine triad pr 99.3 6.5E-13 2.2E-17 109.6 4.0 90 45-139 4-107 (145)
12 2eo4_A 150AA long hypothetical 99.3 1.9E-12 6.5E-17 107.5 6.5 87 48-139 1-101 (149)
13 1xqu_A HIT family hydrolase; p 99.3 1.7E-12 5.9E-17 108.2 6.0 90 45-139 34-138 (147)
14 3ksv_A Uncharacterized protein 99.3 2.9E-12 9.9E-17 106.9 7.1 90 45-139 10-113 (149)
15 3p0t_A Uncharacterized protein 99.1 9.4E-11 3.2E-15 96.0 6.6 87 46-139 5-102 (138)
16 1fit_A FragIle histidine prote 99.1 1.8E-10 6.2E-15 95.3 7.1 73 67-139 15-101 (147)
17 2oik_A Histidine triad (HIT) p 99.1 2.8E-10 9.4E-15 95.0 8.2 84 45-139 9-103 (154)
18 1ems_A Nitfhit, NIT-fragIle hi 99.0 3.2E-10 1.1E-14 109.0 8.0 88 45-139 296-397 (440)
19 1gup_A Galactose-1-phosphate u 98.8 4.7E-09 1.6E-13 98.7 5.5 90 46-139 194-301 (348)
20 3ohe_A Histidine triad (HIT) p 98.7 4.5E-08 1.6E-12 80.3 7.8 71 67-139 15-96 (137)
21 1z84_A Galactose-1-phosphate u 98.7 4.8E-07 1.7E-11 85.1 15.7 222 28-264 37-351 (351)
22 1z84_A Galactose-1-phosphate u 98.7 2.8E-08 9.5E-13 93.6 6.9 86 46-139 214-317 (351)
23 3i24_A HIT family hydrolase; s 98.6 6.8E-08 2.3E-12 80.5 7.7 71 67-139 15-96 (149)
24 3nrd_A Histidine triad (HIT) p 98.4 5.4E-07 1.8E-11 73.7 7.7 67 70-139 21-98 (135)
25 3sp4_A Aprataxin-like protein; 98.1 6.7E-06 2.3E-10 71.7 8.5 73 67-140 23-125 (204)
26 3i4s_A Histidine triad protein 97.9 3.7E-05 1.3E-09 63.8 8.3 67 70-139 24-101 (149)
27 1gup_A Galactose-1-phosphate u 96.8 0.038 1.3E-06 51.5 16.0 218 26-262 22-339 (348)
28 3bl9_A Scavenger mRNA-decappin 93.4 0.31 1.1E-05 44.6 9.0 70 73-143 164-250 (301)
29 1vlr_A MRNA decapping enzyme; 92.6 0.45 1.5E-05 44.3 8.8 70 73-143 211-297 (350)
30 2pof_A CDP-diacylglycerol pyro 78.3 3.6 0.00012 36.1 5.9 69 74-143 40-125 (227)
31 4evx_A Putative phage endolysi 40.8 30 0.001 26.0 4.2 42 236-278 38-93 (106)
32 1whz_A Hypothetical protein; a 33.6 26 0.00089 24.1 2.5 31 238-270 39-69 (70)
33 1swy_A Lysozyme; RB+ binding s 32.1 56 0.0019 26.4 4.7 32 247-278 56-106 (164)
34 3kfu_G Glutamyl-tRNA(Gln) amid 29.4 67 0.0023 23.6 4.4 33 248-280 5-39 (92)
35 3ip4_C Aspartyl/glutamyl-tRNA( 27.5 75 0.0026 23.7 4.4 33 248-280 3-37 (100)
36 3h0l_C Glutamyl-tRNA(Gln) amid 27.4 78 0.0027 23.3 4.4 33 248-280 1-35 (94)
37 2o4w_A Lysozyme; protein foldi 25.8 81 0.0028 25.7 4.7 32 247-278 45-95 (171)
38 3pm7_A Uncharacterized protein 25.7 32 0.0011 25.1 1.8 22 259-280 53-74 (80)
39 2lbf_B 60S acidic ribosomal pr 21.4 75 0.0026 22.4 3.1 28 248-275 18-47 (70)
40 4e97_A Lysozyme; hydrolase, al 20.2 1.1E+02 0.0037 25.1 4.4 32 248-279 80-130 (187)
No 1
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.48 E-value=5.3e-14 Score=113.04 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=65.6
Q ss_pred CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhH---HHHHH----HHHHh--
Q 023281 46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS---FEMIV----RIAFE-- 113 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~---~~~~~----~~~~~-- 113 (284)
+.|+||...+.+. +.. +++ ++.+++++|.+|+.|||+|+||.+|.. + .++++. +.-++ ++++.
T Consensus 3 ~~CiFC~I~~ge~-~~~----iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~ 77 (119)
T 3n1s_A 3 EETIFSKIIRREI-PSD----IVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEG 77 (119)
T ss_dssp CCCHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhhhhhcCCC-cCC----EEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 5799997544322 222 667 889999999999999999999999995 4 777652 22222 33333
Q ss_pred cCCccceEEeecCC--CC-CCceEEEEeecCCcc
Q 023281 114 INNYSFRLFYDCSS--PG-ASHVYFQACYFPDHL 144 (284)
Q Consensus 114 ~~~~gf~vgyNsga--a~-~nHLHfh~~~~~~~l 144 (284)
.+++|||+|+|+|. +. -.|+|+|++. ...|
T Consensus 78 ~~~~g~ni~~n~g~~agq~V~HlH~Hiip-r~~~ 110 (119)
T 3n1s_A 78 IAEDGYRLIMNTNRHGGQEVYHIHMHLLG-GRPL 110 (119)
T ss_dssp CTTTCEEEEEEEHHHHTCCSSSCCEEEEE-SSCC
T ss_pred CCCCCeEEEEeCCCCcCCCcCEEEEEEeC-Cccc
Confidence 35789999999542 11 2699999998 5544
No 2
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.46 E-value=7e-14 Score=123.88 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.1
Q ss_pred CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------c
Q 023281 46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------I 114 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~ 114 (284)
+.|+||......+.+.. +++ ++.+++++|.||+++||+||||.+|.. + .|+++....++++++. .
T Consensus 69 ~~CiFC~i~~~e~~~~~----iV~edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L~~l~~~v~~~l~~~~ 144 (218)
T 3ano_A 69 PAQPFTEIPQLSDEEGL----VVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVS 144 (218)
T ss_dssp -CCHHHHGGGSCHHHHT----EEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCcccccCCCCCce----EEEECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999976544222333 567 889999999999999999999999985 5 7777654443333332 3
Q ss_pred CCccceEEeec----CCCCCCceEEEEee
Q 023281 115 NNYSFRLFYDC----SSPGASHVYFQACY 139 (284)
Q Consensus 115 ~~~gf~vgyNs----gaa~~nHLHfh~~~ 139 (284)
.++|||+|+|. |.+.+.|||+|++.
T Consensus 145 ~~~g~ni~~n~G~~aGq~V~~HlHiHIIP 173 (218)
T 3ano_A 145 RPHGFNVGLNLGTSAGGSLAEHLHVHVVP 173 (218)
T ss_dssp CCSEEEEEEEESGGGTCTTTTSCCEEEEE
T ss_pred CCCCEEEEEecCcccCCcccCEEEEEEEc
Confidence 66799999994 33444899999998
No 3
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.44 E-value=6.7e-14 Score=112.03 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=63.5
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhH---HHHHH----HHHHhc
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS---FEMIV----RIAFEI 114 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~---~~~~~----~~~~~~ 114 (284)
...|+||...+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++. +..++ ++++..
T Consensus 3 ~~~C~FC~i~~~e~-~~~----iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~~~~~~~~~ 77 (119)
T 4egu_A 3 RMDCIFCKIANGEI-PST----KVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEK 77 (119)
T ss_dssp CTTCHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGGTHHHHHHHHHHHHHHHHH
T ss_pred CCCccCeecccCCC-CCC----EEEECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhHHHHHHHHHHHHHHHHHHh
Confidence 45799997644322 222 567 889999999999999999999999985 4 676542 22222 333332
Q ss_pred --CCccceEEeecCCCC---CCceEEEEee
Q 023281 115 --NNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 115 --~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
+++|||+|+|.|..+ -.|+|+|++.
T Consensus 78 ~~~~~~~ni~~n~g~~agq~v~HlH~Hiip 107 (119)
T 4egu_A 78 GFDQTGFRVINNCGSDGGQEVKHLHYHILA 107 (119)
T ss_dssp THHHHCEEEEEEETTTTTCCSCSCCEEEEE
T ss_pred CCCCCCEEEEEeCCCCCCCCcCEEEEEEeC
Confidence 356999999965322 2899999998
No 4
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.42 E-value=1.8e-13 Score=109.29 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred cceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHH---HH----HHHHhcCC
Q 023281 47 ELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM---IV----RIAFEINN 116 (284)
Q Consensus 47 ~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~---~~----~~~~~~~~ 116 (284)
.|+||...+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++..+. ++ ++++..-+
T Consensus 8 ~CiFC~i~~~e~-~~~----iv~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~ 82 (117)
T 3oj7_A 8 SCIFCKIAQKQI-PST----IVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP 82 (117)
T ss_dssp -CHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT
T ss_pred CCcccccccCCC-CCC----EEEECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 399997644322 222 567 889999999999999999999999985 4 666542222 12 22332113
Q ss_pred ccceEEeecCCCC---CCceEEEEeecCCcc
Q 023281 117 YSFRLFYDCSSPG---ASHVYFQACYFPDHL 144 (284)
Q Consensus 117 ~gf~vgyNsgaa~---~nHLHfh~~~~~~~l 144 (284)
+|||+|+|.|..+ -.|+|+|++. ...|
T Consensus 83 ~g~ni~~n~g~~agq~v~H~H~Hiip-r~~~ 112 (117)
T 3oj7_A 83 EGYRVVNNIGEDAGQTVKHIHFHILG-GKKL 112 (117)
T ss_dssp TCEEEECCCSTTTTCCSSSCCEEEEE-SSCC
T ss_pred CCeEEEEcCCCCCCeeeeEEEEEEeC-CCCC
Confidence 5999999965322 2899999998 4433
No 5
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=99.38 E-value=2.6e-13 Score=111.23 Aligned_cols=88 Identities=17% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHH----HHHHHHHhcCCc
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFE----MIVRIAFEINNY 117 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~----~~~~~~~~~~~~ 117 (284)
...|+||...+ . +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++.+. ++-++++..+++
T Consensus 5 ~~~C~fC~i~~--~-~~~----iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~~~~~ 77 (135)
T 3r6f_A 5 MEGCIFCTLYR--K-GAN----IIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLDTIRHLVQKFGFE 77 (135)
T ss_dssp -CCCHHHHHHH--H-CCS----CCEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGGTTHHHHHHHHHHHHTCC
T ss_pred CCCCcCccccc--C-Cce----EEEECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHHHHHHHHHHHHHHHhCCC
Confidence 46799997543 1 222 567 889999999999999999999999985 4 67665432 233444555778
Q ss_pred cceEEeecCCCCC-CceEEEEee
Q 023281 118 SFRLFYDCSSPGA-SHVYFQACY 139 (284)
Q Consensus 118 gf~vgyNsgaa~~-nHLHfh~~~ 139 (284)
|||+|+|.|.+.. .|+|+|++.
T Consensus 78 ~~ni~~n~g~gq~v~HlH~HiiP 100 (135)
T 3r6f_A 78 RYNILQNNGNHQEVFHVHFHVIP 100 (135)
T ss_dssp SEEEECCSSSSCSSSSCCEEEEE
T ss_pred CeEEEEEcCCCCCccEEEEEEec
Confidence 9999999776333 899999998
No 6
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=99.37 E-value=7.7e-13 Score=111.85 Aligned_cols=90 Identities=14% Similarity=0.276 Sum_probs=66.5
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE-------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~-------- 113 (284)
.+.|+||...+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++.+..+++++++
T Consensus 27 ~~~CiFC~i~~~e~-p~~----iV~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~ 101 (161)
T 3lb5_A 27 DNNNIFAKLIRNEI-PSV----RVYEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA 101 (161)
T ss_dssp CTTSHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCCC-Ccc----EEEECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46899997654322 222 667 889999999999999999999999985 5 7887654433333332
Q ss_pred cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+++|||+++|.|..+ -.|+|+|++.
T Consensus 102 ~~~~g~ni~~n~g~~aGq~V~HlHiHiiP 130 (161)
T 3lb5_A 102 FQADGITVMQFNEAASQQTVYHLHFHIIP 130 (161)
T ss_dssp HTCSEEEEEEEESGGGTCCSCSCCEEEEE
T ss_pred cCCCCEEEEEecCcccCCCCCEEEEEEEc
Confidence 3678999999954322 2799999998
No 7
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=99.37 E-value=8.9e-13 Score=109.78 Aligned_cols=90 Identities=16% Similarity=0.282 Sum_probs=65.9
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH-------h-
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF-------E- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~-------~- 113 (284)
...|+||...+.+. +.. +++ ++.++++++.+|+.+||+||||.+|.. + .++++....++++++ +
T Consensus 4 m~~CiFC~i~~~e~-~~~----iv~e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~ 78 (149)
T 3o0m_A 4 SMSCVFCAIVSGDA-PAI----RIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARES 78 (149)
T ss_dssp TTTCHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCccccCCC-CCC----EEEECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45799997644322 222 567 889999999999999999999999985 5 788765443333332 2
Q ss_pred -cCCccceEEeecCCC--C-CCceEEEEee
Q 023281 114 -INNYSFRLFYDCSSP--G-ASHVYFQACY 139 (284)
Q Consensus 114 -~~~~gf~vgyNsgaa--~-~nHLHfh~~~ 139 (284)
.+++|||+++|.|.. . -.|+|+|++.
T Consensus 79 ~~~~~~~ni~~n~g~~aGq~v~HlHiHiiP 108 (149)
T 3o0m_A 79 GLHADGNNIAINDGKAAFQTVFHIHLHVVP 108 (149)
T ss_dssp TTCCSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred CCCCCceEEEEecCCCCCCccceEEEEEEC
Confidence 357899999995432 1 2799999998
No 8
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.37 E-value=5.1e-13 Score=108.22 Aligned_cols=95 Identities=13% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHH---HH----HHHHh
Q 023281 44 QNEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEM---IV----RIAFE 113 (284)
Q Consensus 44 ~~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~---~~----~~~~~ 113 (284)
....|+||..-+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++.... ++ ++++.
T Consensus 13 ~~~~CiFC~i~~~e~-~~~----iv~e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~ 87 (126)
T 3o1c_A 13 PGGDTIFGKIIRKEI-PAK----IIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAAD 87 (126)
T ss_dssp TTCSSHHHHHHHTSS-CCC----EEEECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhcCCC-cCC----EEEECCCEEEEECCCCCCCceEEEEechHhchHhhCchhHHHHHHHHHHHHHHHHHH
Confidence 356799997543221 222 667 889999999999999999999999995 4 666543221 12 33333
Q ss_pred cC-CccceEEeecCC---CCCCceEEEEeecCCcc
Q 023281 114 IN-NYSFRLFYDCSS---PGASHVYFQACYFPDHL 144 (284)
Q Consensus 114 ~~-~~gf~vgyNsga---a~~nHLHfh~~~~~~~l 144 (284)
.. ++|||+|+|.|. ..-.|+|+|++. ...|
T Consensus 88 ~~~~~g~ni~~n~g~~agq~v~HlH~Hiip-r~~~ 121 (126)
T 3o1c_A 88 LGLKKGYRMVVNEGSDGGQSVYHVHLHVLG-GRQM 121 (126)
T ss_dssp TTCTTCEEEECCCHHHHTCCSSSCCEEEEE-SSCC
T ss_pred hCCCCCeEEEEecCCccCCccCEeEEEEeC-Cccc
Confidence 33 469999999542 122799999998 5444
No 9
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=99.34 E-value=8.8e-13 Score=109.55 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=65.6
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------h
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF--------E 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~--------~ 113 (284)
.+.|+||.....+. +.. +++ ++.++++++.+|+.|||+||||.+|.. + .++++....++++++ .
T Consensus 8 m~~CifC~i~~~e~-~~~----iV~e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 82 (147)
T 3imi_A 8 ADNCIFCKIIDGQI-LCS----KVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAE 82 (147)
T ss_dssp GGGCHHHHHHTTSS-CCC----EEEECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCCCcCcccccCCC-cCC----EEEECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35799997654322 222 567 889999999999999999999999985 5 777765443333332 2
Q ss_pred cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+++|||+++|.|..+ -.|+|+|++.
T Consensus 83 ~~~~~~ni~~n~g~~aGq~v~HlHiHiiP 111 (147)
T 3imi_A 83 FNPVGFNLLNNNGEKAGQTVFHFHLHLIP 111 (147)
T ss_dssp HCCSEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred cCCCCEEEEEeCCcccCCCcCEEEEEEeC
Confidence 3678999999954322 2799999998
No 10
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=99.34 E-value=1.3e-12 Score=111.73 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------
Q 023281 44 QNEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF-------- 112 (284)
Q Consensus 44 ~~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~-------- 112 (284)
..+.|+||.....+. +.. +++ ++.++++++.+|..|||+||||.+|.. + .++++.+..++++++
T Consensus 34 ~m~~CiFC~Ii~~e~-p~~----iV~e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~~~~~~v~~~l~~ 108 (173)
T 3l7x_A 34 SMNDCLFCKIVAGDI-PSS----KVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQK 108 (173)
T ss_dssp CCTTCHHHHHHHTSS-CCC----EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCcccccccCCC-Cce----EEEECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899997643221 222 567 889999999999999999999999985 5 777765443333332
Q ss_pred hcCCccceEEeecCCCC---CCceEEEEee
Q 023281 113 EINNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 113 ~~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
..+++|||+++|.|..+ -.|+|+|++.
T Consensus 109 ~~~~~g~ni~~n~g~~aGq~V~HlHiHiIP 138 (173)
T 3l7x_A 109 ATKADGLNIINNNEETAGQTVFHAHVHLVP 138 (173)
T ss_dssp HHTCSEEEEEECCSGGGTCCSCSCCEEEEE
T ss_pred hcCCCCEEEEEecCcccCCCcCEEEEEEEe
Confidence 23678999999965322 2899999998
No 11
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=99.32 E-value=6.5e-13 Score=109.59 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=63.7
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------h
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF--------E 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~--------~ 113 (284)
.+.|+||...+.+. +.. +++ ++.++++++.+|..+||+||||.+|.. + .++++....++++++ .
T Consensus 4 ~~~C~fC~i~~~e~-~~~----iv~e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l~~~~~~v~~~l~~~ 78 (145)
T 1y23_A 4 AENCIFCKIIAGDI-PSA----KVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDE 78 (145)
T ss_dssp -CCCHHHHHHHTSS-CCC----EEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHH
T ss_pred CCCCcCCccccCCC-CCC----EEEECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46799997543221 222 567 889999999999999999999999985 5 777655443222222 2
Q ss_pred cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+++|||+++|.|..+ -.|+|+|++.
T Consensus 79 ~~~~~~ni~~n~g~~~g~~v~HlH~HiiP 107 (145)
T 1y23_A 79 FEPIGLNTLNNNGEKAGQSVFHYHMHIIP 107 (145)
T ss_dssp HCCSEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCcCEEEEEEEc
Confidence 3667999999954321 2899999997
No 12
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.9e-12 Score=107.55 Aligned_cols=87 Identities=15% Similarity=0.285 Sum_probs=63.9
Q ss_pred ceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------cCC
Q 023281 48 LLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------INN 116 (284)
Q Consensus 48 c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~~~ 116 (284)
|+||...+.+. +.. +++ ++.++++++.+|..+||+||||.+|.. + .++++....+++++++ .++
T Consensus 1 CiFC~i~~~e~-~~~----iv~e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~ 75 (149)
T 2eo4_A 1 CTFCSIINREL-EGY----FVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKA 75 (149)
T ss_dssp CHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCcccccCCC-Ccc----EEEECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89997644322 222 567 889999999999999999999999985 5 7777655444343332 366
Q ss_pred ccceEEeecCCCC---CCceEEEEee
Q 023281 117 YSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 117 ~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
+|||+++|.|..+ -.|+|+|++.
T Consensus 76 ~~~ni~~n~g~~~gq~v~HlHiHviP 101 (149)
T 2eo4_A 76 DGLRLLTNIGRSAGQVIFHLHVHIIP 101 (149)
T ss_dssp SEEEEECCCSGGGTCCSCSCCEEEEE
T ss_pred CCeEEEEecCcCCCCCcCEEEEEEEC
Confidence 7999999964321 2899999997
No 13
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.31 E-value=1.7e-12 Score=108.22 Aligned_cols=90 Identities=17% Similarity=0.309 Sum_probs=63.4
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhH---HHHHH----HHHHhc
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARS---FEMIV----RIAFEI 114 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~---~~~~~----~~~~~~ 114 (284)
.++|+||...+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++. +..++ ++++..
T Consensus 34 m~~CiFC~ii~~e~-~~~----iV~e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e~~~l~~l~~~~~~v~~~~ 108 (147)
T 1xqu_A 34 LENCVFCKIIKREL-PST----IYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDL 108 (147)
T ss_dssp CTTCHHHHHHTTSS-CBC----EEEECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHT
T ss_pred cCCCcccccccCCC-CcE----EEEECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45799997654322 222 567 889999999999999999999999995 4 665432 22222 333333
Q ss_pred C--CccceEEeecCCCC---CCceEEEEee
Q 023281 115 N--NYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 115 ~--~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
. +.|||+|+|.|..+ -.|+|+|++.
T Consensus 109 ~~~~~gyni~~n~g~~aGq~v~HlHlHiiP 138 (147)
T 1xqu_A 109 GIAEKGYRLITNCGVAAGQTVFHLHYHLLG 138 (147)
T ss_dssp TCTTTCEEEECCCSTTTTCCSCSCCEEEEE
T ss_pred CCCCCCEEEEEecCcccCCCccEEEEEEeC
Confidence 3 46999999965332 2899999998
No 14
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=99.30 E-value=2.9e-12 Score=106.93 Aligned_cols=90 Identities=19% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE-------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~-------- 113 (284)
...|+||..-+.+. |+.+++ ++.++++++.+|+.+||+||||.+|.. + .++++.+..+++++++
T Consensus 10 ~~~~iFc~Ii~gei-----p~~iV~ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~ 84 (149)
T 3ksv_A 10 AANCIFCKIIKGDI-----PCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGP 84 (149)
T ss_dssp CTTCHHHHHHHTSS-----CCCEEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCHHHHHHcCCC-----CccEEEECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35799996543322 222667 889999999999999999999999985 4 7777654444344442
Q ss_pred cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+++|||+++|.|..+ -.|+|+|++.
T Consensus 85 ~~~~g~ni~~n~g~~aGq~v~HlHiHiiP 113 (149)
T 3ksv_A 85 DGSMQYNVLQNNGSLAHQEVPHVHFHIIP 113 (149)
T ss_dssp TSCCEEEEEECCSTTTTCCSSSCCEEEEE
T ss_pred hCCCCEEEEEecCcccCCCCCEEEEEEEe
Confidence 2567999999965432 2899999998
No 15
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=99.11 E-value=9.4e-11 Score=96.01 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=60.0
Q ss_pred CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------c
Q 023281 46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------I 114 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~ 114 (284)
..|+||...+.+. +.. +++ ++.+++++|.+|+.+||+||||.+|.. + .++++....+++++++ .
T Consensus 5 ~~CiFC~i~~~e~-p~~----iV~e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~ 79 (138)
T 3p0t_A 5 MASIFTKIINREL-PGR----FVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAF 79 (138)
T ss_dssp HHHHHHHHHTTSS-CCC----EEEECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHhcCCC-CcC----EEEeCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699997654322 222 567 889999999999999999999999985 5 7777654443344432 2
Q ss_pred CCccceEEeecCCCCCCceEEEEee
Q 023281 115 NNYSFRLFYDCSSPGASHVYFQACY 139 (284)
Q Consensus 115 ~~~gf~vgyNsgaa~~nHLHfh~~~ 139 (284)
+++++|+ +.+|-.-.|+|+|++.
T Consensus 80 ~~~~~n~--~~~gq~v~HlH~HiiP 102 (138)
T 3p0t_A 80 RTERSGL--IIAGLEVPHLHVHVFP 102 (138)
T ss_dssp TCSEEEE--EECCSSCSSCCEEEEE
T ss_pred CCCCCcE--EECCcccCEEEEEEec
Confidence 5555444 4333223699999998
No 16
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.07 E-value=1.8e-10 Score=95.26 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=55.6
Q ss_pred ccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------cCCccceEEeecCC--CC-CCc
Q 023281 67 AVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE--------INNYSFRLFYDCSS--PG-ASH 132 (284)
Q Consensus 67 ~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~--------~~~~gf~vgyNsga--a~-~nH 132 (284)
+++ ++.+.++++.+|..+||+||||.+|.. + .++++....++++++. .+++|||+++|+|. +. -.|
T Consensus 15 iv~e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~H 94 (147)
T 1fit_A 15 VFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKH 94 (147)
T ss_dssp EEEECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSS
T ss_pred EEEECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCccCCCccE
Confidence 456 789999999999999999999999985 5 7777654433343332 35679999999653 22 279
Q ss_pred eEEEEee
Q 023281 133 VYFQACY 139 (284)
Q Consensus 133 LHfh~~~ 139 (284)
+|+|++.
T Consensus 95 lH~HiiP 101 (147)
T 1fit_A 95 VHVHVLP 101 (147)
T ss_dssp CCEEEEE
T ss_pred EEEEEEC
Confidence 9999998
No 17
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.07 E-value=2.8e-10 Score=94.96 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=60.0
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE-------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~-------- 113 (284)
...|+||... +.. +++ ++.++++++.+|+.+||+||||.+|.. + .++++....++++++.
T Consensus 9 ~~~C~FC~~~-----~~~----iv~e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l~~~~~~v~~~l~~~ 79 (154)
T 2oik_A 9 HKNCELCTTA-----GGE----ILWQDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREV 79 (154)
T ss_dssp CTTCHHHHSC-----CSE----EEEECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCC-----CCe----EEEECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999632 112 566 889999999999999999999999995 5 7777654433233332
Q ss_pred cCCccceEEeecCCCCCCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPGASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~~nHLHfh~~~ 139 (284)
.+++|||++ .+|-...|+|+|++.
T Consensus 80 ~~~~g~ni~--~~gq~v~HlHiHiiP 103 (154)
T 2oik_A 80 MRPDKINLA--SLGNMTPHVHWHVIP 103 (154)
T ss_dssp HCCSEEEEE--ECCSSSCSCEEEEEE
T ss_pred hCCCcEEhH--HhCCCCCEEEEEEeC
Confidence 356788887 233333799999998
No 18
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.03 E-value=3.2e-10 Score=109.05 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHHh--------
Q 023281 45 NEELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAFE-------- 113 (284)
Q Consensus 45 ~~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~~-------- 113 (284)
.+.|+||....+ ... +++ +++++++++.+|..+||+||||.+|.. + .++++.+..+++++++
T Consensus 296 ~~~c~fc~~e~p---~~~----iv~e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~~~~~~v~~~l~~~ 368 (440)
T 1ems_A 296 TGGLKFARFNIP---ADH----IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKH 368 (440)
T ss_dssp SSCCEETTEECC---GGG----EEEECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeeccccC---Cce----EEEECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 457999972222 111 456 889999999999999999999999985 5 7777554433333332
Q ss_pred cCCccceEEeecCCCC---CCceEEEEee
Q 023281 114 INNYSFRLFYDCSSPG---ASHVYFQACY 139 (284)
Q Consensus 114 ~~~~gf~vgyNsgaa~---~nHLHfh~~~ 139 (284)
.+++|||+++|.|..+ -.|+|+|++.
T Consensus 369 ~~~~~~n~~~~~g~~~gq~v~HlH~Hiip 397 (440)
T 1ems_A 369 HNVTSTTICVQDGKDAGQTVPHVHIHILP 397 (440)
T ss_dssp TTCSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred cCCCCeEEEEecCCCCCCCccEEEEEEeC
Confidence 2677999999965321 2799999998
No 19
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=98.77 E-value=4.7e-09 Score=98.73 Aligned_cols=90 Identities=4% Similarity=-0.068 Sum_probs=63.1
Q ss_pred CcceeeecCCCc-cccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------h
Q 023281 46 EELLFCVTRSEK-ANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF--------E 113 (284)
Q Consensus 46 ~~c~fc~~~~~~-~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~--------~ 113 (284)
..|+||..-..+ ...+. +++ ++++.++++.+|..+||+||||.+|.. + .++++....+.++++ .
T Consensus 194 ~~Cifc~ii~~E~~~~~~----iV~E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~La~~l~~v~~~l~~~ 269 (348)
T 1gup_A 194 KSPMLVDYVQRELADGSR----TVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNL 269 (348)
T ss_dssp SSCHHHHHHHHHHHHCTT----EEEECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHhhccccCce----EEEeCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999753321 11123 566 889999999999999999999999995 4 777655443323332 2
Q ss_pred cCCc-cceEEeecC----CCCC-CceEEEEee
Q 023281 114 INNY-SFRLFYDCS----SPGA-SHVYFQACY 139 (284)
Q Consensus 114 ~~~~-gf~vgyNsg----aa~~-nHLHfh~~~ 139 (284)
.+.+ +||+|+|.+ ++.. .|+|+|++.
T Consensus 270 ~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiP 301 (348)
T 1gup_A 270 FQCSFPYSMGWHGAPFNGEENQHWQLHAHFYP 301 (348)
T ss_dssp HTSCCCEEEEEECCCSSSSCCTTCCCEEEEEC
T ss_pred hCCCCCeEEEEEeCCCCCCCCcccEEEEEEec
Confidence 3555 999999943 2222 799999998
No 20
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=98.67 E-value=4.5e-08 Score=80.34 Aligned_cols=71 Identities=4% Similarity=-0.070 Sum_probs=50.5
Q ss_pred ccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHH----HH----HhcCCccceEEeecCCCCCCceEE
Q 023281 67 AVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVR----IA----FEINNYSFRLFYDCSSPGASHVYF 135 (284)
Q Consensus 67 ~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~----~~----~~~~~~gf~vgyNsgaa~~nHLHf 135 (284)
+++ .+.+++++|.+|+.|||++|+|.+|.. + .++++....++. ++ +..++.|+|+| .+|-.. .|+|+
T Consensus 15 ~v~~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-~HlH~ 92 (137)
T 3ohe_A 15 KLGESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-PQLHL 92 (137)
T ss_dssp EEEECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-CSCCE
T ss_pred EEEECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-CEEEE
Confidence 344 678999999999999998888888885 5 777765432222 22 23467788888 333333 69999
Q ss_pred EEee
Q 023281 136 QACY 139 (284)
Q Consensus 136 h~~~ 139 (284)
|++.
T Consensus 93 HviP 96 (137)
T 3ohe_A 93 HHIV 96 (137)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9998
No 21
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.67 E-value=4.8e-07 Score=85.11 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=118.4
Q ss_pred EcCccCCCccCCcccc------CCCcceeeecCCCccccccCCCccc---CCCcEEEEEeCccCCC------------C-
Q 023281 28 LNEKWIMDPFILNSID------QNEELLFCVTRSEKANSELIPSAAV---PNDSILVIINANPIEY------------G- 85 (284)
Q Consensus 28 lNp~R~~~~~k~~~~k------~~~~c~fc~~~~~~~~~~~~~~~~~---~~~~~~vliN~~Pi~~------------g- 85 (284)
.+|.|+.++-.+.-.+ ....|.||..+......+.. ++. .+-.++|+.|.||+.+ |
T Consensus 37 vs~~R~~RP~~~~~~~~~~~~~~~~~CpfCpg~~~~t~~e~~--~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l 114 (351)
T 1z84_A 37 FSPARAKRPTDFKSKSPQNPNPKPSSCPFCIGREQECAPELF--RVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGT 114 (351)
T ss_dssp ECC----CGGGCCCCCC-------CCCTTSTTCGGGSSCEEE--EESTTCSSCSEEEEECSSCSSBGGGTTTC-------
T ss_pred EeCCCCCCCCCCcccccccccCCCCCCcCCCCCcccCCcccc--cccccCCCceEEEEcCCCccccCCCCCcccccccch
Confidence 4566766654322111 22369999865432111110 011 1346899999999994 5
Q ss_pred ----------eEEEeeccccc-C-CCChhHHHHHHHHHHh----c----CCccceEEee----cCCCCCCceEEEEeecC
Q 023281 86 ----------HVFVVPCGSNR-L-YPDARSFEMIVRIAFE----I----NNYSFRLFYD----CSSPGASHVYFQACYFP 141 (284)
Q Consensus 86 ----------H~l~vP~~~~~-~-~l~~~~~~~~~~~~~~----~----~~~gf~vgyN----sgaa~~nHLHfh~~~~~ 141 (284)
++++.+..|.. + .++.+....++++..+ . ...++.+|-| +|||.+ |.|.|++-++
T Consensus 115 ~~~~~~~G~~~Vii~sp~H~~~l~~ls~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~-HpH~QI~a~~ 193 (351)
T 1z84_A 115 SRTIVGFGFHDVVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMS-HSHSQMMALP 193 (351)
T ss_dssp -CEEECBCEEEEEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCS-SCEEEEEEES
T ss_pred hhccccCcceEEEEeCCCCCCCcHHCCHHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCc-CccceeEecC
Confidence 77888888884 5 8887665554444332 1 3469999999 677885 9999999854
Q ss_pred CccceeecCC----------------cccccCC---CCceEEEEc----cCCCeeEEEEEEe---------cCCHHHHHH
Q 023281 142 DHLPVELMPI----------------DTFFSDG---QRGIYISTL----IDYPIKTILFEYT---------YNNRIIMME 189 (284)
Q Consensus 142 ~~lPie~~~~----------------~~l~~~~---~~g~~~~~l----~~yp~~~f~~~~~---------~~~~e~~~~ 189 (284)
. +|-+-... ..+.... ..+..+..+ .-||...+++--. ......++.
T Consensus 194 ~-~p~~~~~e~~~~~~y~~~~~~ciFc~ii~~E~iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~ 272 (351)
T 1z84_A 194 V-VPPTVSSRLDGTKDYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGG 272 (351)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHSSCTTTTHHHHSEEEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHH
T ss_pred c-CChHHHHHHHHHHHHHhhcCCCHHHHHHhcCeEEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHH
Confidence 4 43322110 0000000 011112222 2345556554320 012334455
Q ss_pred HHHHHHHHhhh--cCCCceEEEEeC------------CeEEEEEeccCCCCCCcceecc-cceeeecChHHHhhcCHHHH
Q 023281 190 AISEICSSLRE--KNISYNLLISDC------------GKRIFLFLQKSAISGNLLAWEC-GGYFLFGSKYEFDQVTEEAI 254 (284)
Q Consensus 190 ~~~~~~~~L~~--~~~~~Nl~~~~~------------~~rv~ifPR~~~~~~~pa~~El-aG~li~~~~edf~~lTe~~i 254 (284)
++.++...|.. ...++|+.+-.+ -+.+-|+||.+. .+-.|| .|..+ ...|.|++
T Consensus 273 ~l~~v~~~l~~~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~----~~Gfe~~~~~~i-------~~~~pE~~ 341 (351)
T 1z84_A 273 LLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSG----VGGFEIGTGCYI-------NPVFPEDV 341 (351)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCCC----CCHHHHHHSCCE-------ESSCHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCCccceEEEEEEccCCC----cCccccccCccc-------CCccHHHH
Confidence 55555443322 122899987631 178889999872 112344 23222 34789999
Q ss_pred HHHHHhccCC
Q 023281 255 HKRLSAVSLN 264 (284)
Q Consensus 255 ~~il~evsl~ 264 (284)
.+.|+++.|+
T Consensus 342 A~~LR~~~~~ 351 (351)
T 1z84_A 342 AKVMREVSLT 351 (351)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHHhccCC
Confidence 9999998774
No 22
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.66 E-value=2.8e-08 Score=93.61 Aligned_cols=86 Identities=9% Similarity=0.160 Sum_probs=62.4
Q ss_pred CcceeeecCCCccccccCCCcccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHHH--------hc
Q 023281 46 EELLFCVTRSEKANSELIPSAAVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIAF--------EI 114 (284)
Q Consensus 46 ~~c~fc~~~~~~~~~~~~~~~~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~~--------~~ 114 (284)
..|+||..... +. +++ ++++++++..+|..|||+||||.+|.. + .++++....+.++++ ..
T Consensus 214 ~~ciFc~ii~~----E~----iV~E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~~La~~l~~v~~~l~~~~ 285 (351)
T 1z84_A 214 GKCCLCEAKSK----HF----VIDESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQL 285 (351)
T ss_dssp SSCTTTTHHHH----SE----EEEECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHhc----Ce----EEecCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 47999965321 21 355 889999999999999999999999995 5 777655443323333 23
Q ss_pred CCccceEEeecCCC-------CCCceEEEEee
Q 023281 115 NNYSFRLFYDCSSP-------GASHVYFQACY 139 (284)
Q Consensus 115 ~~~gf~vgyNsgaa-------~~nHLHfh~~~ 139 (284)
+.+|||+|+|.|.. ..-|+|+|++.
T Consensus 286 ~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiP 317 (351)
T 1z84_A 286 NDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP 317 (351)
T ss_dssp TSCCEEEEEECCCTTCCGGGGGGCCCEEEEEE
T ss_pred CCCCEEEEEeCCCccCCCCCCccceEEEEEEc
Confidence 56699999995421 22699999998
No 23
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=98.63 E-value=6.8e-08 Score=80.50 Aligned_cols=71 Identities=4% Similarity=-0.102 Sum_probs=49.8
Q ss_pred ccC-CCcEEEEEeCccCCCCeEEEeeccccc-C-CCChhHHHHHHHHH--------HhcCCccceEEeecCCCCCCceEE
Q 023281 67 AVP-NDSILVIINANPIEYGHVFVVPCGSNR-L-YPDARSFEMIVRIA--------FEINNYSFRLFYDCSSPGASHVYF 135 (284)
Q Consensus 67 ~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~-~-~l~~~~~~~~~~~~--------~~~~~~gf~vgyNsgaa~~nHLHf 135 (284)
+++ ++.+++++|.+|+.|||+||+|.+|.. + .++++....++..+ +..+++|+|+|. +|-.. .|+|+
T Consensus 15 ~v~~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~-aGq~V-~HlH~ 92 (149)
T 3i24_A 15 VLGNLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGA-LGNLV-PQLHI 92 (149)
T ss_dssp EEEECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-CCSSC-CSCCE
T ss_pred EEEECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhh-hhCCC-CEEEE
Confidence 344 678999999999999998888877875 5 77776543222222 224677888883 33333 79999
Q ss_pred EEee
Q 023281 136 QACY 139 (284)
Q Consensus 136 h~~~ 139 (284)
|++.
T Consensus 93 HvIP 96 (149)
T 3i24_A 93 HHIA 96 (149)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9998
No 24
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=98.42 E-value=5.4e-07 Score=73.67 Aligned_cols=67 Identities=4% Similarity=-0.150 Sum_probs=46.6
Q ss_pred CCcEEEEEeCccCCCCeEEEeec-cccc-C-CCChhHHHHHHHHHH--------hcCCccceEEeecCCCCCCceEEEEe
Q 023281 70 NDSILVIINANPIEYGHVFVVPC-GSNR-L-YPDARSFEMIVRIAF--------EINNYSFRLFYDCSSPGASHVYFQAC 138 (284)
Q Consensus 70 ~~~~~vliN~~Pi~~gH~l~vP~-~~~~-~-~l~~~~~~~~~~~~~--------~~~~~gf~vgyNsgaa~~nHLHfh~~ 138 (284)
.+.++|++|.+|+.||| |+||. +|.. + .++++....++..+. ..++.|+|+| .+|-.. .|+|+|++
T Consensus 21 ~~~~~v~l~~~~~~p~~-lvVpkr~h~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-~HlH~Hvi 97 (135)
T 3nrd_A 21 LGLCQMRLMNDRRWPWL-ILVPQRADIKEVFELTPLDQAMLTFETNLVAAGLKKATGAEKINIG-ALGNIV-RQLHVHVI 97 (135)
T ss_dssp CSSEEEEEESCTTSCEE-EEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-ECCSSC-CSCCEEEE
T ss_pred CCcEEEEEcCCCCCCEE-EEEcCccccCChHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-eccCCC-CEEEEEEe
Confidence 67899999999999976 89999 4664 4 777655432222222 2467788887 333333 79999999
Q ss_pred e
Q 023281 139 Y 139 (284)
Q Consensus 139 ~ 139 (284)
.
T Consensus 98 P 98 (135)
T 3nrd_A 98 A 98 (135)
T ss_dssp E
T ss_pred c
Confidence 8
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=98.13 E-value=6.7e-06 Score=71.75 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=49.7
Q ss_pred ccC-CCcEEEEEeCccCCCCeEEEeecccccC--CCCh------hHHHHHHHHHH-h---------------c-CCc---
Q 023281 67 AVP-NDSILVIINANPIEYGHVFVVPCGSNRL--YPDA------RSFEMIVRIAF-E---------------I-NNY--- 117 (284)
Q Consensus 67 ~~~-~~~~~vliN~~Pi~~gH~l~vP~~~~~~--~l~~------~~~~~~~~~~~-~---------------~-~~~--- 117 (284)
+++ ++.++++.+.||..+||+||||.+|..- .++. ..+..+..++. . . +..
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~LVIPk~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQQLTNEALC 102 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEEEEEECCTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCTTCCHHHHH
T ss_pred EEEEcCCEEEEeCCCCCCCccEEEEeccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCcCCee
Confidence 566 8899999999999999999999999843 2211 12222223333 1 1 111
Q ss_pred -cceEEeecCCCCCCceEEEEeec
Q 023281 118 -SFRLFYDCSSPGASHVYFQACYF 140 (284)
Q Consensus 118 -gf~vgyNsgaa~~nHLHfh~~~~ 140 (284)
.||+||-++=+. +|||+|+...
T Consensus 103 ~~i~~GfHa~PSm-~HLHLHVIS~ 125 (204)
T 3sp4_A 103 NYIKVGFHAGPSM-NNLHLHIMTL 125 (204)
T ss_dssp TTEEEEEESSCSS-SSCCEEEEES
T ss_pred eeEeccCCCCCcc-cceeEEEecc
Confidence 468888865544 8999999984
No 26
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=97.89 E-value=3.7e-05 Score=63.84 Aligned_cols=67 Identities=7% Similarity=0.000 Sum_probs=44.8
Q ss_pred CCcEEEEEeCccCCCCeEEEeecc-ccc-C-CCChhHHHHHHHHHH--------hcCCccceEEeecCCCCCCceEEEEe
Q 023281 70 NDSILVIINANPIEYGHVFVVPCG-SNR-L-YPDARSFEMIVRIAF--------EINNYSFRLFYDCSSPGASHVYFQAC 138 (284)
Q Consensus 70 ~~~~~vliN~~Pi~~gH~l~vP~~-~~~-~-~l~~~~~~~~~~~~~--------~~~~~gf~vgyNsgaa~~nHLHfh~~ 138 (284)
...+.|++|..| .++|+|+||.+ |.. + .++++....++..++ ..++.|||+| ++|-.-.|+|+|++
T Consensus 24 ~p~~~v~l~~~~-~~~H~LVIPk~~H~~~l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~--~aGq~V~HlH~HvI 100 (149)
T 3i4s_A 24 LPLSKVLVIKDA-NYPWLLLVPRRPDAVEIIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIA--ALGNLVPQLHVHII 100 (149)
T ss_dssp CSSEEEEEESCT-TSCEEEEEECCTTCCSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE--ECCSSCCSCCEEEE
T ss_pred cCceEEEECCCC-CCCEEEEEecccccCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe--ecCCcCCEEEEEEE
Confidence 457889999766 45699999999 564 5 777765443323332 1356787776 22222379999999
Q ss_pred e
Q 023281 139 Y 139 (284)
Q Consensus 139 ~ 139 (284)
.
T Consensus 101 P 101 (149)
T 3i4s_A 101 A 101 (149)
T ss_dssp E
T ss_pred C
Confidence 8
No 27
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=96.84 E-value=0.038 Score=51.46 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=115.7
Q ss_pred EEEcCccCCCccCCcccc--------CCCcceeeecCCCccccccCCCcccCCCcEEEEEeCccCCCC------------
Q 023281 26 AQLNEKWIMDPFILNSID--------QNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYG------------ 85 (284)
Q Consensus 26 ~QlNp~R~~~~~k~~~~k--------~~~~c~fc~~~~~~~~~~~~~~~~~~~~~~~vliN~~Pi~~g------------ 85 (284)
+=.+|.|+.++-.+.-.+ .+..|.||..+........ .-| +.+.|+-|.||....
T Consensus 22 v~vs~~R~~RP~~~~~~~~~~~~~p~~~~~CpfCpg~~~~t~~~~----p~~-~~~~v~~N~fpal~~~~~~~~~~~~~l 96 (348)
T 1gup_A 22 ILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDKN----PDY-TGTYVFTNDFAALMSDTPDAPESHDPL 96 (348)
T ss_dssp EEECTTGGGSCCCSCCCCCCCSCCCSCCTTCTTSTTCBCTTSCBC----CCC-SSCEEEECTTCSCCTTCCCCCCCCCSS
T ss_pred EEEeCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcccCCCCC----CCC-ceEEEecCCCceeccCCCCccccCccc
Confidence 335688877664321111 1236999986543211110 112 237899999998841
Q ss_pred ---------eEEEeeccccc--C-CCChhHHHHHHHHHH----hc--CCccceEEee----cCCCCCCceEEEEeecCCc
Q 023281 86 ---------HVFVVPCGSNR--L-YPDARSFEMIVRIAF----EI--NNYSFRLFYD----CSSPGASHVYFQACYFPDH 143 (284)
Q Consensus 86 ---------H~l~vP~~~~~--~-~l~~~~~~~~~~~~~----~~--~~~gf~vgyN----sgaa~~nHLHfh~~~~~~~ 143 (284)
|-.||=...|. + .++.+....++++.. +. .-...-+|=| +|||. .|-|-|++-++.
T Consensus 97 ~~~~~~~G~~~VIi~sp~H~~~l~~l~~~~~~~vi~~~~~r~~~l~~~~~yV~iF~N~G~~~G~Sl-~HpH~Qi~a~~~- 174 (348)
T 1gup_A 97 MRCQSARGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGCSN-PHPGGQIWANSF- 174 (348)
T ss_dssp SCEEECCEEEEEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEESGGGTCSC-CSSEEEEEEESS-
T ss_pred eecCccceeEEEEEcCCcccCChhhCCHHHHHHHHHHHHHHHHHHhhcCCEEEEecccCCcCCcCC-CCCceeEEeccc-
Confidence 44555554553 3 777655444332222 11 1236778999 56666 699999998544
Q ss_pred cceeecCC----------------------------cccccCCCCceEEEEccC----CCeeEEEEEEe---------cC
Q 023281 144 LPVELMPI----------------------------DTFFSDGQRGIYISTLID----YPIKTILFEYT---------YN 182 (284)
Q Consensus 144 lPie~~~~----------------------------~~l~~~~~~g~~~~~l~~----yp~~~f~~~~~---------~~ 182 (284)
+|-+.... ..++ .+..+..+.+ +|...+++--. ..
T Consensus 175 ~p~~~~~e~~~~~~y~~~~~~Cifc~ii~~E~~~~~~iV~----E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~ 250 (348)
T 1gup_A 175 LPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVV----ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDA 250 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHCTTEEE----ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHH
T ss_pred CChHHHHHHHHHHHHHhcCCCCchhHHHhhccccCceEEE----eCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHH
Confidence 33221100 0111 1111222223 35556555420 01
Q ss_pred CHHHHHHHHHHHHHHhh---hcCCCceEEEEe---C-------CeEEEEEe---ccC-CCCCCcceecccceeeecChHH
Q 023281 183 NRIIMMEAISEICSSLR---EKNISYNLLISD---C-------GKRIFLFL---QKS-AISGNLLAWECGGYFLFGSKYE 245 (284)
Q Consensus 183 ~~e~~~~~~~~~~~~L~---~~~~~~Nl~~~~---~-------~~rv~ifP---R~~-~~~~~pa~~ElaG~li~~~~ed 245 (284)
....+...+.++...+. ....+||+.+-. + -+.+-|+| |.+ ... +.+.+|+++-.
T Consensus 251 e~~~La~~l~~v~~~l~~~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~-~~~g~e~~~~~------- 322 (348)
T 1gup_A 251 QRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRK-FMVGYEMLAET------- 322 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBC-CCCTHHHHTCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCccc-ceeeEecccCC-------
Confidence 22344445555555443 233589998762 1 17888999 877 333 34556774321
Q ss_pred HhhcCHHHHHHHHHhcc
Q 023281 246 FDQVTEEAIHKRLSAVS 262 (284)
Q Consensus 246 f~~lTe~~i~~il~evs 262 (284)
+..+|.|++.+.|+++.
T Consensus 323 ~~~~~pE~~A~~Lr~~~ 339 (348)
T 1gup_A 323 QRDLTAEQAAERLRAVS 339 (348)
T ss_dssp EESSCHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHhhh
Confidence 24578999999999864
No 28
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=93.45 E-value=0.31 Score=44.57 Aligned_cols=70 Identities=6% Similarity=0.083 Sum_probs=47.4
Q ss_pred EEEEEeC----ccCCCCeEEEeecccc--cC-CCChhHHHHH-------HHHHHh---cCCccceEEeecCCCCCCceEE
Q 023281 73 ILVIINA----NPIEYGHVFVVPCGSN--RL-YPDARSFEMI-------VRIAFE---INNYSFRLFYDCSSPGASHVYF 135 (284)
Q Consensus 73 ~~vliN~----~Pi~~gH~l~vP~~~~--~~-~l~~~~~~~~-------~~~~~~---~~~~gf~vgyNsgaa~~nHLHf 135 (284)
+.++-.. .|...-|+|.||.+++ ++ .|+.+-+.++ .+.+.+ .....+++||=.-=+. -|||+
T Consensus 164 FvllpDlkWd~~~~~~lhlLaI~~~~~I~SlrdL~~~HlpLL~~M~~~~~~~i~~~y~~~~~~~rlgfHy~PS~-yHLHl 242 (301)
T 3bl9_A 164 FVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSY-YHLHV 242 (301)
T ss_dssp EEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSCSS-SSCEE
T ss_pred EEEeccCccCCCcccccEEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCCCc-ceEEE
Confidence 4444443 4999999999999995 45 7776554443 123322 2456899999944344 79999
Q ss_pred EEeecCCc
Q 023281 136 QACYFPDH 143 (284)
Q Consensus 136 h~~~~~~~ 143 (284)
|++..+..
T Consensus 243 Hvis~~~~ 250 (301)
T 3bl9_A 243 HFTALGFE 250 (301)
T ss_dssp EEEETTSC
T ss_pred EEEecCCC
Confidence 99995443
No 29
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=92.61 E-value=0.45 Score=44.35 Aligned_cols=70 Identities=6% Similarity=0.082 Sum_probs=47.5
Q ss_pred EEEEEeC----ccCCCCeEEEeecccc--cC-CCChhHHHHH-------HHHHHh---cCCccceEEeecCCCCCCceEE
Q 023281 73 ILVIINA----NPIEYGHVFVVPCGSN--RL-YPDARSFEMI-------VRIAFE---INNYSFRLFYDCSSPGASHVYF 135 (284)
Q Consensus 73 ~~vliN~----~Pi~~gH~l~vP~~~~--~~-~l~~~~~~~~-------~~~~~~---~~~~gf~vgyNsgaa~~nHLHf 135 (284)
+.++-.. .|...-|+|.||.++. ++ .|+.+-+.++ .+++.+ .....+++||=.-=+. -|||+
T Consensus 211 FvllpDlKWd~~~~~~lhlLaI~~~~dI~SlRdL~~~HlpLL~~M~~~~~~ii~~~yg~~~~~lRlgfHy~PS~-yHLHl 289 (350)
T 1vlr_A 211 FVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPSY-YHLHV 289 (350)
T ss_dssp EEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESSCSS-SSCEE
T ss_pred eEEeccCccCCCccccceEEEEecccCCCChHHCCHhHHHHHHHHHHHHHHHHHHhcCCChHHeEEEecCCCCc-ceEEE
Confidence 4554444 4999999999999995 45 7776544443 123322 2456899999944344 79999
Q ss_pred EEeecCCc
Q 023281 136 QACYFPDH 143 (284)
Q Consensus 136 h~~~~~~~ 143 (284)
|++..+..
T Consensus 290 Hvis~~~~ 297 (350)
T 1vlr_A 290 HFTALGFE 297 (350)
T ss_dssp EEEETTSC
T ss_pred EEEeccCC
Confidence 99995443
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=78.32 E-value=3.6 Score=36.06 Aligned_cols=69 Identities=7% Similarity=0.063 Sum_probs=47.5
Q ss_pred EEEEeCccCCCCeEEEeeccccc-C----CC---ChhHHHHHHHH----HHh----cCCccceEEeecCCCCC-CceEEE
Q 023281 74 LVIINANPIEYGHVFVVPCGSNR-L----YP---DARSFEMIVRI----AFE----INNYSFRLFYDCSSPGA-SHVYFQ 136 (284)
Q Consensus 74 ~vliN~~Pi~~gH~l~vP~~~~~-~----~l---~~~~~~~~~~~----~~~----~~~~gf~vgyNsgaa~~-nHLHfh 136 (284)
+|++.- +..+-|.|++|..... . ++ ++.+...++.. .+. ..+..+-+..||-.+=. ||||.|
T Consensus 40 yvvlKD-~~Gp~qyLLmPt~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIH 118 (227)
T 2pof_A 40 YVVLKD-LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIH 118 (227)
T ss_dssp EEEEEC-SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCGGGCSCCSCCEE
T ss_pred EEEEeC-CCCCceEEEeccccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceEEEecCCCCccccceeee
Confidence 444444 7799999999988873 3 33 35666666532 222 35568999999755543 999999
Q ss_pred EeecCCc
Q 023281 137 ACYFPDH 143 (284)
Q Consensus 137 ~~~~~~~ 143 (284)
+-.++..
T Consensus 119 IsClrp~ 125 (227)
T 2pof_A 119 ISCIRPD 125 (227)
T ss_dssp EEEBCHH
T ss_pred hhhCCHH
Confidence 9997743
No 31
>4evx_A Putative phage endolysin; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Probab=40.80 E-value=30 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=28.9
Q ss_pred ceeeecChHHHhhcCHHHHHHHHHh--------------ccCChHHHHHHHHHHHhh
Q 023281 236 GYFLFGSKYEFDQVTEEAIHKRLSA--------------VSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 236 G~li~~~~edf~~lTe~~i~~il~e--------------vsl~~~~f~~l~~~~~~~ 278 (284)
||...+.+.. ..+|++++.++|+. +.|++.+|+.|.+.++.+
T Consensus 38 Ght~~~~~~~-~~iT~~ea~~ll~~dl~~~~~~v~~~v~v~l~q~q~dALvSf~yNv 93 (106)
T 4evx_A 38 GHMLTPDETL-TFITPDQAEAFLLDDLNSCDILLQNCLPELNDRFQRETLIALMFSI 93 (106)
T ss_dssp TEECCTTCCC-CBCCHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred eeccCCCCCC-CccCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhHhC
Confidence 6665444443 78898888887752 467788888877777655
No 32
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=33.62 E-value=26 Score=24.13 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=24.5
Q ss_pred eeecChHHHhhcCHHHHHHHHHhccCChHHHHH
Q 023281 238 FLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQV 270 (284)
Q Consensus 238 li~~~~edf~~lTe~~i~~il~evsl~~~~f~~ 270 (284)
+++|+... .+..-.+.+|++++.++.|+|.+
T Consensus 39 ~~vP~h~~--ei~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 39 VVVPFHSG--ELPKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp EEEECSSS--SCCHHHHHHHHHHTTCCHHHHHH
T ss_pred eEecCCcC--cCCHHHHHHHHHHcCCCHHHHhh
Confidence 45555443 48899999999999999999865
No 33
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=32.07 E-value=56 Score=26.37 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=23.1
Q ss_pred hhcCHHHHHHHHHh-------------------ccCChHHHHHHHHHHHhh
Q 023281 247 DQVTEEAIHKRLSA-------------------VSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 247 ~~lTe~~i~~il~e-------------------vsl~~~~f~~l~~~~~~~ 278 (284)
..+|++++.++|++ +.+++.+|+.|.+.++-+
T Consensus 56 ~~iT~~ea~~ll~~dl~~~~~~v~~~~~~~~~~~~l~q~q~dALvs~~fN~ 106 (164)
T 1swy_A 56 GVITKDEAEKLFNQDVAAAVRGILRNAKLKPVYDSLDAVRECALINMVFQM 106 (164)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHHHcC
Confidence 47999988888754 456777777777776554
No 34
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=29.45 E-value=67 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred hcCHHHHHHHHH--hccCChHHHHHHHHHHHhhhh
Q 023281 248 QVTEEAIHKRLS--AVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 248 ~lTe~~i~~il~--evsl~~~~f~~l~~~~~~~~~ 280 (284)
++|.+++..+-+ ...+++++.+++.+++.+|-+
T Consensus 5 ~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~~Il~ 39 (92)
T 3kfu_G 5 ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILD 39 (92)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 488899888764 778899999999888877754
No 35
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=27.47 E-value=75 Score=23.68 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.1
Q ss_pred hcCHHHHHHHHH--hccCChHHHHHHHHHHHhhhh
Q 023281 248 QVTEEAIHKRLS--AVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 248 ~lTe~~i~~il~--evsl~~~~f~~l~~~~~~~~~ 280 (284)
++|.+++.++-+ ...+++++.+++.+++.+|-+
T Consensus 3 ~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~ 37 (100)
T 3ip4_C 3 KVTREEVEHIANLARLQISPEETEEMANTLESILD 37 (100)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 578888887754 788899999988888877643
No 36
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=27.43 E-value=78 Score=23.28 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=25.4
Q ss_pred hcCHHHHHHHH--HhccCChHHHHHHHHHHHhhhh
Q 023281 248 QVTEEAIHKRL--SAVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 248 ~lTe~~i~~il--~evsl~~~~f~~l~~~~~~~~~ 280 (284)
.+|.+++.++- ....+++++.+++.+++.+|-+
T Consensus 1 ~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~ 35 (94)
T 3h0l_C 1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILD 35 (94)
T ss_dssp -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 36888887765 4788899999999888877754
No 37
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=25.75 E-value=81 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=23.3
Q ss_pred hhcCHHHHHHHHHh-------------------ccCChHHHHHHHHHHHhh
Q 023281 247 DQVTEEAIHKRLSA-------------------VSLNDEGFQVVKQLCCSI 278 (284)
Q Consensus 247 ~~lTe~~i~~il~e-------------------vsl~~~~f~~l~~~~~~~ 278 (284)
..+|++++.++|++ +.+++.+|+.|.+.++-+
T Consensus 45 ~~iT~~ea~~ll~~Dl~~~~~~v~~~~~~~~~~v~l~q~q~dALvSfafNv 95 (171)
T 2o4w_A 45 GVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQM 95 (171)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHHHHHHHHHHhc
Confidence 47899988887764 456777777777776654
No 38
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=25.74 E-value=32 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.8
Q ss_pred HhccCChHHHHHHHHHHHhhhh
Q 023281 259 SAVSLNDEGFQVVKQLCCSIAS 280 (284)
Q Consensus 259 ~evsl~~~~f~~l~~~~~~~~~ 280 (284)
+-++|+.|++..|++.+.+|-.
T Consensus 53 KGITLT~eE~~~Lk~~L~~~~~ 74 (80)
T 3pm7_A 53 KGITLTNEEFAELSKTIKSMLE 74 (80)
T ss_dssp EEEEECHHHHHHHHHHHHHTCC
T ss_pred CcceeCHHHHHHHHHHHHHHHH
Confidence 4689999999999999988754
No 39
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=21.40 E-value=75 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred hcCHHHHHHHHHhccCC--hHHHHHHHHHH
Q 023281 248 QVTEEAIHKRLSAVSLN--DEGFQVVKQLC 275 (284)
Q Consensus 248 ~lTe~~i~~il~evsl~--~~~f~~l~~~~ 275 (284)
.+|++++..+++.+.+. ++....+.+.+
T Consensus 18 ~~ta~~I~~il~aaGvevd~~~~~~~~~aL 47 (70)
T 2lbf_B 18 SPSAKDIKKILDSVGIEADDDRLNKVISEL 47 (70)
T ss_dssp SCCHHHHHHHHHTTTCCCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 68999999999987665 55555555444
No 40
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=20.18 E-value=1.1e+02 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=22.7
Q ss_pred hcCHHHHHHHHHh--------c-----------cCChHHHHHHHHHHHhhh
Q 023281 248 QVTEEAIHKRLSA--------V-----------SLNDEGFQVVKQLCCSIA 279 (284)
Q Consensus 248 ~lTe~~i~~il~e--------v-----------sl~~~~f~~l~~~~~~~~ 279 (284)
.+|++++.+++.+ + .+++.+++.|.+.++-|.
T Consensus 80 ~it~~~a~~ll~~Dl~~~~~~~~~~~~~~~~~~~l~~~~~~ALvsm~FNlG 130 (187)
T 4e97_A 80 VITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAINHVFQMG 130 (187)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHheeeeeccC
Confidence 4788877777642 1 378888888888887653
Done!