BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023283
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 23 IEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQF 82
++ +V+ +P+ A +L G LSW+ EE+L+ S FK A+RGG+PIC+P F
Sbjct: 41 LDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWF 99
Query: 83 G--NRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFR 140
G + L HGFARN W + + ++ V + L+ SE K WPH F
Sbjct: 100 GPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTFELQSSEATRKYWPHDFTLL 153
Query: 141 LRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQR 200
R + + L + F+ + A H+YF + DI+ V++ GL ++D +
Sbjct: 154 ARFKVGKTCEIELEAH------GEFATTSALHSYFNVGDIANVKVSGLGD-RFIDKVNDA 206
Query: 201 ERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTF 238
+ TF DRVYL+ I D RT
Sbjct: 207 KEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTI 244
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 24 EQVVLRNPRGASAKISL--HGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQ 81
++VVL +P + + + +G SW+ + EE L+ ST A VRGGIP+ FP
Sbjct: 8 KEVVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPV 66
Query: 82 FGNRGS------LEQHGFARNRSWVI----DDNPPPLKPSDSQGKVYVDLLLKP---SEE 128
FG + L QHG ARN +W +NPP V LKP + E
Sbjct: 67 FGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPT-----------VQFGLKPEIANPE 115
Query: 129 DLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
K+WP + L V L +D I + K F+ +HTYF I DI + L
Sbjct: 116 LTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNL 175
Query: 189 ETLDYLDNLCQRERFTEQGDALTFESEIDRVY--LSSSDKIAILDHERKRTFVIHKEGLP 246
+ D L +E + ++ +TF E D +Y +S+ I I+D + + + + LP
Sbjct: 176 AGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLP 233
Query: 247 D 247
D
Sbjct: 234 D 234
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 24 EQVVLRNPRGASAKISL--HGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQ 81
++VVL +P + + + +G SW+ + EE L+ ST A VRGGIP+ FP
Sbjct: 8 KEVVLTHPADETTSVHILKYGATVYSWKL-KSEEQLWLSTAAKLDGSKPVRGGIPLVFPV 66
Query: 82 FGNRGS------LEQHGFARNRSWVI----DDNPPPLKPSDSQGKVYVDLLLKP---SEE 128
FG + L QHG ARN +W +NPP V LKP + E
Sbjct: 67 FGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPT-----------VQFGLKPEIANPE 115
Query: 129 DLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGL 188
K+WP + L V L +D I + K F+ +HTYF I DI + L
Sbjct: 116 LTKLWPMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNL 175
Query: 189 ETLDYLDNLCQRERFTEQGDALTFESEIDRVY--LSSSDKIAILDHERKRTFVIHKEGLP 246
+ D L +E + ++ +TF E D +Y +S+ I I+D + + + + LP
Sbjct: 176 AGMKLYDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLP 233
Query: 247 D 247
D
Sbjct: 234 D 234
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 45/234 (19%)
Query: 19 DRNGIEQVVLRNPRGASAKISLHGGQALSWRTERG-EELLFTSTKAIFKPPHAVRGGIPI 77
N I + L++ G +AKISL G Q +SW+ + +++L+ S FK +A+RGG+PI
Sbjct: 17 QHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPI 75
Query: 78 CFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSF 137
C+P FG HG AR R W + Y+ +
Sbjct: 76 CYPWFGGVKQ-PAHGTARIRLWQLSH-------------YYISV---------------H 106
Query: 138 EFRLRVSLAADGNL--ALISRIRNINCKPFSFS--------IAYHTYFAISDISEVRIEG 187
+ RL L +D N+ A +S + C +F+ A HTYF I DI++V ++G
Sbjct: 107 KVRLEFELFSDLNIIEAKVSMVFTDKCH-LTFTHYGEESAQAALHTYFNIGDINQVEVQG 165
Query: 188 LETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
L + ++L Q++ ++ +D +Y + + + ILD RT +H
Sbjct: 166 LPETCF-NSLNQQQENVPSPRHIS--ENVDCIYSAENMQNQILDKSFNRTIALH 216
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 36 AKISL---HGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP--------QFGN 84
A++SL GG W T +G+ +L+ + P +VRGGIPI FP QF +
Sbjct: 23 ARLSLVPGRGGLVTEW-TVQGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNH 81
Query: 85 RGS---LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRL 141
G L+QHGFAR+ W + +Q +DL L ++ L+ +P +FE
Sbjct: 82 AGKSYRLKQHGFARDLPWEVIGQ-------QTQDNARLDLRLSHNDATLEAFPFAFELVF 134
Query: 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLD 195
L +L + RI N+ + FS+ +H YF + + + + DYLD
Sbjct: 135 SYQLQGH-SLRIEQRIANLGDQRXPFSLGFHPYFFCREKLGITL-AIPANDYLD 186
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEED--LKIWPHSFEFRLRVSLAAD 148
HGF +N W + K Q K V+++ ++E+ K + H F+F+L L++
Sbjct: 109 HGFIKNSKWTVH------KKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSK 162
Query: 149 GNLALISRIRNINCKPFSFSIAYHTYFAI 177
G L + + N++ + S+ YH+ F +
Sbjct: 163 G-LKQTTSVVNLSSEEXPLSVGYHSAFNV 190
>pdb|3Q1N|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Lsei_2598) From Lactobacillus Casei Atcc 334 At 1.61 A
Resolution
Length = 294
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 25/138 (18%)
Query: 76 PICFPQFGNRGS-----------LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLK 124
PI FP G QHGFAR+ + + D SDS V
Sbjct: 47 PILFPSIGKSNQDQYRLGAKTYPXSQHGFARDYDFDVSDK------SDSA----VTFTQH 96
Query: 125 PSEEDLKIWPHSFEFRLRVSLA-ADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEV 183
+ E LK +P FE+ L V+ DG L++ + N + K F++ +H F + ++
Sbjct: 97 QNAETLKKFP--FEYTLAVTYXLTDGGLSVHYTVTNDDSKSXPFALGFHPAFNVGLKADG 154
Query: 184 RIEGLE-TLDYLDNLCQR 200
+ + T++ L++ QR
Sbjct: 155 SFDDYDLTVEPLNSPLQR 172
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 38 ISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP--------QFGNRGS-- 87
IS HG + S ++ +E HA P+ FP ++ +G
Sbjct: 14 ISDHGAEIQSVKSAHTDEEFXWQANPEIWGRHA-----PVLFPIVGRLKNDEYTYKGKTY 68
Query: 88 -LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRL 141
L QHGFARN + ++ + K + LLK +EE K++P FEFR+
Sbjct: 69 HLGQHGFARNADFEVE----------NHTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|2KLO|A Chain A, Structure Of The Cdt1 C-Terminal Domain
Length = 138
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
E+R++ LE L L + + +E+ ALT E R+ S + A+ E ++ V+
Sbjct: 38 ELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMV--DSCQTALSPGEMEKHLVLL 95
Query: 242 KEGLPDWCGIH 252
E LPDW +H
Sbjct: 96 AELLPDWLSLH 106
>pdb|2RQQ|A Chain A, Structure Of C-Terminal Region Of Cdt1
Length = 113
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
E+R++ LE L L + + +E+ ALT E R+ S + A+ E ++ V+
Sbjct: 13 ELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMV--DSCQTALSPGEMEKHLVLL 70
Query: 242 KEGLPDWCGIH 252
E LPDW +H
Sbjct: 71 AELLPDWLSLH 81
>pdb|3A4C|A Chain A, Crystal Structure Of Cdt1 C Terminal Domain
Length = 106
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
E+R++ LE L L + + +E+ ALT E R+ S + A+ E ++ V+
Sbjct: 6 ELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMV--DSCQTALSPGEMEKHLVLL 63
Query: 242 KEGLPDWCGIH 252
E LPDW +H
Sbjct: 64 AELLPDWLSLH 74
>pdb|2NMS|A Chain A, The Crystal Structure Of The Extracellular Domain Of The
Inhibitor Receptor Expressed On Myeloid Cells Irem-1
Length = 124
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 225 DKIAILDHERKRTFVIHKEGLPD------WCGIHGRGN 256
D+++I D+++ RTF + E L WCGI GN
Sbjct: 62 DRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGN 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,611,348
Number of Sequences: 62578
Number of extensions: 354379
Number of successful extensions: 687
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 13
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)