Query 023283
Match_columns 284
No_of_seqs 195 out of 1580
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 6.5E-60 1.4E-64 405.2 26.3 273 1-283 1-292 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 6.3E-52 1.4E-56 372.4 26.5 248 26-282 2-265 (269)
3 COG0676 Uncharacterized enzyme 100.0 8.2E-46 1.8E-50 323.5 21.1 227 20-271 21-254 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 2.1E-43 4.5E-48 317.6 22.6 246 24-283 2-268 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 1.2E-37 2.6E-42 282.5 23.6 240 26-283 1-284 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 4.8E-35 1E-39 263.3 21.5 228 37-283 4-270 (273)
7 PF01263 Aldose_epim: Aldose 1 100.0 1.4E-34 3E-39 262.8 18.1 247 24-283 1-297 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 2.2E-33 4.7E-38 252.3 22.9 236 35-283 2-283 (284)
9 PRK15172 putative aldose-1-epi 100.0 2.7E-32 6E-37 248.6 25.5 239 22-283 9-293 (300)
10 cd09022 Aldose_epim_Ec_YihR Al 100.0 3.3E-31 7.1E-36 239.8 23.2 227 34-283 1-282 (284)
11 cd09019 galactose_mutarotase_l 100.0 4.6E-29 1E-33 230.0 22.4 240 26-282 2-321 (326)
12 COG2017 GalM Galactose mutarot 100.0 2.1E-28 4.6E-33 223.7 22.3 245 20-283 9-301 (308)
13 PLN00194 aldose 1-epimerase; P 100.0 1.2E-26 2.5E-31 214.7 24.3 246 22-281 8-329 (337)
14 TIGR02636 galM_Leloir galactos 99.9 5.2E-26 1.1E-30 210.3 22.5 244 23-282 4-329 (335)
15 PRK11055 galM galactose-1-epim 99.9 5.3E-24 1.1E-28 197.1 23.9 243 22-281 8-333 (342)
16 PTZ00485 aldolase 1-epimerase; 99.9 6E-22 1.3E-26 184.6 23.6 222 19-253 9-310 (376)
17 KOG1604 Predicted mutarotase [ 99.7 2.9E-16 6.4E-21 140.7 20.1 222 18-253 15-294 (353)
18 cd09023 Aldose_epim_Ec_c4013 A 99.7 5.4E-17 1.2E-21 147.0 14.6 235 38-283 5-283 (284)
19 PF14486 DUF4432: Domain of un 99.0 7.1E-10 1.5E-14 101.2 7.5 252 21-283 2-298 (302)
20 cd09269 deoxyribose_mutarotase 99.0 3.1E-09 6.8E-14 96.5 10.3 184 87-283 61-290 (293)
21 PF14315 DUF4380: Domain of un 97.5 0.0063 1.4E-07 55.0 15.4 127 24-169 5-144 (274)
22 TIGR03593 yidC_nterm membrane 93.6 1.4 3E-05 41.4 12.5 118 24-166 74-203 (366)
23 PF14849 YidC_periplas: YidC p 93.0 1.2 2.7E-05 39.5 10.6 121 26-167 2-131 (270)
24 PRK01318 membrane protein inse 90.9 7.7 0.00017 38.4 14.2 121 25-167 40-170 (521)
25 PF09095 DUF1926: Domain of un 79.5 34 0.00075 30.8 11.5 128 19-165 3-174 (278)
26 COG0832 UreB Urea amidohydrola 75.1 4 8.7E-05 30.9 3.4 32 142-176 12-43 (106)
27 PF00699 Urease_beta: Urease b 73.4 5.4 0.00012 30.2 3.7 31 143-176 12-42 (100)
28 PRK13203 ureB urease subunit b 72.0 6.1 0.00013 30.0 3.7 31 143-176 13-43 (102)
29 cd00407 Urease_beta Urease bet 71.8 6.1 0.00013 30.0 3.7 31 143-176 13-43 (101)
30 TIGR00192 urease_beta urease, 71.8 6.4 0.00014 29.9 3.8 31 143-176 13-43 (101)
31 PRK13202 ureB urease subunit b 66.6 9.7 0.00021 29.1 3.8 31 143-176 13-44 (104)
32 PRK13201 ureB urease subunit b 65.8 9.2 0.0002 30.5 3.7 31 143-176 13-43 (136)
33 PRK13205 ureB urease subunit b 63.6 10 0.00023 30.9 3.7 31 143-176 13-43 (162)
34 PRK13198 ureB urease subunit b 63.2 11 0.00023 30.8 3.7 43 131-176 28-71 (158)
35 PRK13204 ureB urease subunit b 63.0 11 0.00024 30.8 3.7 43 131-176 23-66 (159)
36 PF05506 DUF756: Domain of unk 62.4 22 0.00047 26.0 5.1 40 133-175 5-44 (89)
37 PRK13192 bifunctional urease s 51.4 19 0.00042 30.9 3.5 42 132-176 110-152 (208)
38 PRK13986 urease subunit alpha; 47.0 23 0.00051 30.7 3.4 31 143-176 118-148 (225)
39 PF12690 BsuPI: Intracellular 46.9 29 0.00063 25.2 3.5 19 150-168 1-19 (82)
40 PF02929 Bgal_small_N: Beta ga 46.1 94 0.002 27.9 7.4 153 27-198 1-159 (276)
41 PF04744 Monooxygenase_B: Mono 42.3 32 0.0007 32.3 3.8 28 140-168 255-282 (381)
42 PF13629 T2SS-T3SS_pil_N: Pilu 40.5 1.1E+02 0.0023 21.4 5.5 47 209-256 14-62 (72)
43 TIGR03079 CH4_NH3mon_ox_B meth 39.5 39 0.00084 31.8 3.8 26 141-167 275-300 (399)
44 PF06165 Glyco_transf_36: Glyc 37.5 1.2E+02 0.0026 23.1 5.8 34 136-169 49-83 (110)
45 PF06030 DUF916: Bacterial pro 28.6 1.5E+02 0.0033 23.1 5.2 33 145-177 23-55 (121)
46 PF00207 A2M: Alpha-2-macroglo 27.3 1.4E+02 0.003 21.7 4.5 36 134-169 55-90 (92)
47 COG2835 Uncharacterized conser 23.4 34 0.00074 23.5 0.5 13 69-81 36-48 (60)
48 PF00942 CBM_3: Cellulose bind 21.9 1.4E+02 0.003 21.6 3.6 33 149-181 13-46 (86)
49 PRK10340 ebgA cryptic beta-D-g 21.8 1E+03 0.023 25.7 11.8 118 25-162 725-845 (1021)
50 PRK05089 cytochrome C oxidase 21.8 3.7E+02 0.0081 22.9 6.6 52 117-170 63-115 (188)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-60 Score=405.25 Aligned_cols=273 Identities=62% Similarity=1.039 Sum_probs=249.5
Q ss_pred CCCCCCCCCCcceEEEEecCCCceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCC
Q 023283 1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP 80 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP 80 (284)
|++...-+..++.+.+.++.+|++.+.|++++|.+|+|.+|||+|+||+.+.|+|+||.+..+.+++.+|||||+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP 80 (305)
T KOG1594|consen 1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP 80 (305)
T ss_pred CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence 66777777889999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeC
Q 023283 81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI 160 (284)
Q Consensus 81 ~~g~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~ 160 (284)
+||..+.+++|||||++.|.++....+++ ..+.+.|.|.|.+++++++.|||.|++++++.|.+ +.|+++.+|+|+
T Consensus 81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt 156 (305)
T KOG1594|consen 81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT 156 (305)
T ss_pred ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence 99999999999999999999998764443 22367899999999999999999999999999996 789999999999
Q ss_pred CCCeEEEeeccCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEE
Q 023283 161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVI 240 (284)
Q Consensus 161 ~~~~~~~~~g~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i 240 (284)
+++|+.|++++|+||+++|+++++|+||++..|+|++.+...|.++.+.++|.+++|+||.+.|.++.|.|...+|+|.|
T Consensus 157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l 236 (305)
T KOG1594|consen 157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVL 236 (305)
T ss_pred CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEE
Confidence 99999999999999999999999999999999999998888899989999999999999999999999999999999999
Q ss_pred EecCCCCEEEEcCCCCCCCcccC-----Cccc--------------cceEEeecchhccccc
Q 023283 241 HKEGLPDWCGIHGRGNQNQWQIL-----EMKS--------------TGTCFVLMGQQLRNRL 283 (284)
Q Consensus 241 ~~~~~~~~vvw~p~~~~~pw~~~-----~~~~--------------~g~~~~~~g~~~~~~~ 283 (284)
.++|+|++||| |||.+. |+.+ +....|+|||.|.+|.
T Consensus 237 ~k~g~pDaVVW------NPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q 292 (305)
T KOG1594|consen 237 KKEGLPDAVVW------NPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQ 292 (305)
T ss_pred eccCCCceEEe------ChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEE
Confidence 99999999999 899842 2222 2356789999998875
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=6.3e-52 Score=372.39 Aligned_cols=248 Identities=40% Similarity=0.690 Sum_probs=210.5
Q ss_pred EEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC---CCCCceeeccCCeEEe
Q 023283 26 VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG---SLEQHGFARNRSWVID 102 (284)
Q Consensus 26 ~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~---~~~~HGfar~~~W~v~ 102 (284)
++|+|+ +++|+|.++||+|+||++++++|+||.++.+.|+..++||||+|+||||||+.. .+++|||||++.|+|.
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 678998 499999999999999998666999999999999999999999999999999986 6899999999999998
Q ss_pred ccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcceecCCcce
Q 023283 103 DNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~~~~~~~ 182 (284)
+.. ++++.++++|.+.+++++++.|||+|+++++|+|.+ ++|+++++|+|+|+++|||++|+||||+++++.+
T Consensus 81 ~~~------~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~ 153 (269)
T cd09020 81 EVS------EDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQ 153 (269)
T ss_pred eee------cCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECCCCCCeEehhccCeeEecCCccc
Confidence 764 122367889999888888899999999999999997 7899999999999999999999999999999999
Q ss_pred EEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEecCCCCEEEEcCCCC------
Q 023283 183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGN------ 256 (284)
Q Consensus 183 ~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~~~------ 256 (284)
++|.|++++.|+|++.+... ..+.+.+.+.+++||||.+.++.++|.|+..+++|+|++++++++|||||..+
T Consensus 154 ~~v~gl~~~~y~d~~~~~~~-~~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~ 232 (269)
T cd09020 154 VRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMA 232 (269)
T ss_pred cEEeCCCCCceEEcCCCccc-cccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccc
Confidence 99999999999998765322 22346788889999999998888999999999999999999999999976321
Q ss_pred ---CCCcccCCccc----cceEEeecchhcccc
Q 023283 257 ---QNQWQILEMKS----TGTCFVLMGQQLRNR 282 (284)
Q Consensus 257 ---~~pw~~~~~~~----~g~~~~~~g~~~~~~ 282 (284)
.+-|..+.|.| .+...|.|||+++..
T Consensus 233 d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~ 265 (269)
T cd09020 233 DFPDDGYRRMVCVEAANVADPVTLAPGESHTLS 265 (269)
T ss_pred cCCccccceEEEECeeecCCCEEECCCCCEEEE
Confidence 01122222222 266788888888765
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-46 Score=323.48 Aligned_cols=227 Identities=34% Similarity=0.548 Sum_probs=194.6
Q ss_pred CCCceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCCC--CCCceeeccC
Q 023283 20 RNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGS--LEQHGFARNR 97 (284)
Q Consensus 20 ~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~~--~~~HGfar~~ 97 (284)
++.++.+.+.+.. .+|.|+.+||+|+||++++++|+||+|+.+.++.+++|||||||||||||+... +|+|||||++
T Consensus 21 ~~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 5678888899985 899999999999999997678999999999999999999999999999999875 6999999999
Q ss_pred CeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcceec
Q 023283 98 SWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAI 177 (284)
Q Consensus 98 ~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~~ 177 (284)
+|++.+.. .+++.+.++|.|..+++ |+.|.+++++.|++ .|+++++..|..+ |+.++||||++
T Consensus 100 ~W~l~~~~------~~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g~--~le~~l~~~~~~s----~~~AlHtYF~V 162 (287)
T COG0676 100 PWKLLEHD------EDEDGVRVTFGLDLEDE-----PHDFTLRLTFRFGE--TLELELESYGEES----FQAALHTYFRV 162 (287)
T ss_pred ceeeeehh------cccCceEEEEEeCCCcc-----ccceEEEEEeeccc--eEEEEEEecChhH----HHHhhcceEEe
Confidence 99999886 24447889999987543 99999999999974 5899888888765 99999999999
Q ss_pred CCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEecCCCCEEEEcCCCCC
Q 023283 178 SDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQ 257 (284)
Q Consensus 178 ~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~~~~ 257 (284)
+|+++++|+||++..+.+.+.. +.-..+.+..+|.+++||||++......|.|+..+|.|+|+..+.+++|||
T Consensus 163 gDi~qv~V~GL~~~~~~~~~~~-~~~v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvW------ 235 (287)
T COG0676 163 GDIEQVEVSGLGGVCIDKVLNA-EEEVTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVW------ 235 (287)
T ss_pred cchhheEeccCCceehhhhhhc-eeeccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEE------
Confidence 9999999999998666555443 332223445889999999999988889999999999999999999999999
Q ss_pred CCccc-----CCccccceE
Q 023283 258 NQWQI-----LEMKSTGTC 271 (284)
Q Consensus 258 ~pw~~-----~~~~~~g~~ 271 (284)
|||.+ .+|+++||+
T Consensus 236 NP~~~~s~~M~d~~d~gyq 254 (287)
T COG0676 236 NPGHAKSSSMADMPDDGYQ 254 (287)
T ss_pred CCCccccccccccccccce
Confidence 88883 666666765
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.1e-43 Score=317.56 Aligned_cols=246 Identities=24% Similarity=0.461 Sum_probs=202.4
Q ss_pred eEEEEECCC-ccEEEE-eCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----------CCCC
Q 023283 24 EQVVLRNPR-GASAKI-SLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLEQ 90 (284)
Q Consensus 24 ~~~~L~~~~-g~~~~V-~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~-----------~~~~ 90 (284)
+.++|+++. ++++.| +.+||+|+||+. +|+|+||+++.+.++..+++|||+|+||||+||+. .+++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~ 80 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQ 80 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccC
Confidence 567888874 466655 589999999997 47899999998888888899999999999999974 4689
Q ss_pred ceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeec
Q 023283 91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIA 170 (284)
Q Consensus 91 HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g 170 (284)
|||+|+++|++.+.. +..+++|++.+++..+.+|||+|+++++|+|.+ ++|+++++|+|+++++|||++|
T Consensus 81 HGf~r~~~W~v~~~~---------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g 150 (271)
T cd09025 81 HGFARDLPWEVELLG---------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNLGDQPMPFSFG 150 (271)
T ss_pred cccccCCCEEEEecC---------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEECCCCcEEEEEe
Confidence 999999999998753 145788999887767889999999999999987 7999999999999999999999
Q ss_pred cCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEecC-CCCEE
Q 023283 171 YHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEG-LPDWC 249 (284)
Q Consensus 171 ~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~-~~~~v 249 (284)
+||||++++..+++|.++. ..|+|+..+... ....+...++.++|++|..++ .++|.++..+++|+|.+++ ++++|
T Consensus 151 ~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~v 227 (271)
T cd09025 151 FHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEA-NTPGQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNLV 227 (271)
T ss_pred cCceeeCCchhccEEEcCH-HHHhhhccCCcc-CCcccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceEE
Confidence 9999999998889998874 567776543211 111223444668999999876 7899998878999999874 79999
Q ss_pred EEcCCCC----CCCccc-CCcc--ccceEEeecchhccccc
Q 023283 250 GIHGRGN----QNQWQI-LEMK--STGTCFVLMGQQLRNRL 283 (284)
Q Consensus 250 vw~p~~~----~~pw~~-~~~~--~~g~~~~~~g~~~~~~~ 283 (284)
||||+.. +|||.. .|.. ..|+.+|+|||+++.++
T Consensus 228 vw~p~~~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~ 268 (271)
T cd09025 228 VWTDKGKDFVCLEPWTGPRNALNTGERLLLLPPGETEEASV 268 (271)
T ss_pred EecCCCCcEEEEecCCCCccccCcCCccEEECCCCEEEEEE
Confidence 9999865 999862 2222 36999999999998765
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.2e-37 Score=282.45 Aligned_cols=240 Identities=22% Similarity=0.337 Sum_probs=182.1
Q ss_pred EEEECCCccEEEEeCCCeEEEEEEeC-CCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----------CCCCcee
Q 023283 26 VVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLEQHGF 93 (284)
Q Consensus 26 ~~L~~~~g~~~~V~~~GA~l~s~~~~-~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~-----------~~~~HGf 93 (284)
++|+|+. ++|+|..+||+|+||+.+ +|+|+||.++.+.|. +++|+||||+||+. ++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4789987 999999999999999985 589999999877765 67899999999984 4789999
Q ss_pred eccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCc
Q 023283 94 ARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHT 173 (284)
Q Consensus 94 ar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~Hp 173 (284)
+|++.|++.+.+ ..+++|++.+++.+..+|||+|+++++|+|.+ ++|+++++|+|+++++|||++|+||
T Consensus 74 ~r~~~w~v~~~~----------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (288)
T cd09024 74 ARDMEFEVVEQS----------DDSVTFELTDNEETLKVYPFDFELRVTYTLEG-NTLKVTYEVKNPDDKTMPFSIGGHP 142 (288)
T ss_pred cccCceEEEEcc----------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeC-CEEEEEEEEEcCCCCceEEEEeCCc
Confidence 999999998764 34788999887766789999999999999996 7999999999999999999999999
Q ss_pred ceecCCcc-----eEE--EecCCCCcc--ccc---cccc-cceeecCCeeecCC-Cc-cEE--EeCCC-CeEEEEeCCCC
Q 023283 174 YFAISDIS-----EVR--IEGLETLDY--LDN---LCQR-ERFTEQGDALTFES-EI-DRV--YLSSS-DKIAILDHERK 235 (284)
Q Consensus 174 YF~~~~~~-----~~~--v~gl~~~~~--~d~---~~~~-~~~~~~~~~~~~~~-~~-D~v--y~~~~-~~~~l~d~~~~ 235 (284)
||++++.. +++ +...+.... ++. +..+ .........+.+.. .. |.+ |.++. +.+.|.++..+
T Consensus 143 YF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (288)
T cd09024 143 AFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTG 222 (288)
T ss_pred eEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCC
Confidence 99998542 443 332111111 110 1111 01001122344433 22 333 44443 57889888778
Q ss_pred cEEEEEecCCCCEEEEcCC-CC----CCCccc-CCc--------cccceEEeecchhccccc
Q 023283 236 RTFVIHKEGLPDWCGIHGR-GN----QNQWQI-LEM--------KSTGTCFVLMGQQLRNRL 283 (284)
Q Consensus 236 r~i~i~~~~~~~~vvw~p~-~~----~~pw~~-~~~--------~~~g~~~~~~g~~~~~~~ 283 (284)
+.|+|..+++++++||+|+ +. +|||.. .|. ...|++.|+|||+++.++
T Consensus 223 ~~v~l~~~~~~~l~vwt~~~~~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~ 284 (288)
T cd09024 223 HGVTVDFDDFPYLGIWSKPNGAPFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASY 284 (288)
T ss_pred CEEEEEeCCCCEEEEeCCCCCCCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEE
Confidence 9999998889999999998 55 999994 222 236999999999998764
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=4.8e-35 Score=263.34 Aligned_cols=228 Identities=16% Similarity=0.190 Sum_probs=172.4
Q ss_pred EEeCCCeEEEEEEeCC-CeEEEEeCCCcccCCCCCccCccceeCCCCCCCC--------------------CCCCceeec
Q 023283 37 KISLHGGQALSWRTER-GEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG--------------------SLEQHGFAR 95 (284)
Q Consensus 37 ~V~~~GA~l~s~~~~~-g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~--------------------~~~~HGfar 95 (284)
.|+..||.|.||+..+ +.|+||..+++.. ++.++|+|+|||+.||+. .+++|||+|
T Consensus 4 ~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar 80 (273)
T cd09021 4 LAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW 80 (273)
T ss_pred eCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh
Confidence 5678999999999843 5899998776542 133689999999999973 127999999
Q ss_pred cCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcce
Q 023283 96 NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (284)
Q Consensus 96 ~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF 175 (284)
++.|+|++.. +.+++|++..++.. +||+|+++++|+|.+ ++|+++++++|+++++|||++|+||||
T Consensus 81 ~~~w~v~~~~----------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~-~~L~i~~~~~N~~~~~~~~~~g~H~YF 146 (273)
T cd09021 81 RRPWQVVAAS----------ADSAELQLDHEADD---PPWAYRAEQRFHLAG-DGLSITLSVTNRGDRPMPAGLGFHPYF 146 (273)
T ss_pred cCceEEEecc----------CCeEEEEEecCCCC---CCEeEEEEEEEEEcC-CCEEEEEEEEECCCCCceeeeecCccE
Confidence 9999998764 23577777654432 499999999999987 789999999999999999999999999
Q ss_pred ecCCcceEEEecCCCCccc---cccccccceeec----CCeeec-CCCccEEEeCCCCeEEEEeCCCCcEEEEEecC-CC
Q 023283 176 AISDISEVRIEGLETLDYL---DNLCQRERFTEQ----GDALTF-ESEIDRVYLSSSDKIAILDHERKRTFVIHKEG-LP 246 (284)
Q Consensus 176 ~~~~~~~~~v~gl~~~~~~---d~~~~~~~~~~~----~~~~~~-~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~-~~ 246 (284)
++++..+++|.+.. .+. +.++.+...... .....+ ..++|++|......+.+.++..+++|+|.+++ ++
T Consensus 147 ~~~~~~~l~v~~~~--~~~~d~~~lp~~~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~ 224 (273)
T cd09021 147 PRTPDTRLQADADG--VWLEDEDHLPTGLRPHPPDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFS 224 (273)
T ss_pred ecCCCCEEEEecce--EEecCCCcCCCcccCCCcchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCCC
Confidence 99987777775542 111 233222110000 111222 34899999976666888898889999999988 99
Q ss_pred CEEEEcCCCC----CCCccc----CCcc-ccceEEeecchhccccc
Q 023283 247 DWCGIHGRGN----QNQWQI----LEMK-STGTCFVLMGQQLRNRL 283 (284)
Q Consensus 247 ~~vvw~p~~~----~~pw~~----~~~~-~~g~~~~~~g~~~~~~~ 283 (284)
++|||||... +|||.. .+.+ ..|++.|+|||+++.++
T Consensus 225 ~~vvwtp~~~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~ 270 (273)
T cd09021 225 HLVVYRPPGEDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSM 270 (273)
T ss_pred EEEEEcCCCCCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEE
Confidence 9999999644 999962 3333 47889999999987653
No 7
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=1.4e-34 Score=262.81 Aligned_cols=247 Identities=21% Similarity=0.357 Sum_probs=168.0
Q ss_pred eEEEEECCCccEEEEeCCCeEEEEEEeCC-CeEEEEeCCC--cccCC--------CCCcc---C-----ccceeCCCCCC
Q 023283 24 EQVVLRNPRGASAKISLHGGQALSWRTER-GEELLFTSTK--AIFKP--------PHAVR---G-----GIPICFPQFGN 84 (284)
Q Consensus 24 ~~~~L~~~~g~~~~V~~~GA~l~s~~~~~-g~e~L~~~~~--~~~~~--------~~~ir---g-----G~pvlfP~~g~ 84 (284)
..|+|+|+.+++++|+.+||+|.||+..+ ++|+||..+. .++.. +.+.| | |.+.|||+++.
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~~~ 80 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWNGP 80 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSSBT
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeeccC
Confidence 46899998569999999999999999854 5999998886 23321 22223 3 45555555443
Q ss_pred CCCCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCc-EEEEEEEEeCCCC
Q 023283 85 RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGN-LALISRIRNINCK 163 (284)
Q Consensus 85 ~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~-L~~~~~v~N~~~~ 163 (284)
..+++|||+|++.|+|.+.. + ..+++|++..+....++|||+|+++++|+|.+ ++ |+++++|+|.+ +
T Consensus 81 -~~~~~HG~~~~~~w~v~~~~------~---~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i~~~v~n~~-~ 148 (300)
T PF01263_consen 81 -YPNPIHGFARNKPWEVEEQS------E---DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTITYEVTNDG-K 148 (300)
T ss_dssp -TTBEETBSGGGSB-EEEEEE------E---TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEEEEEEEESS-S
T ss_pred -CCcCCCCCcccccEEEEEec------c---cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEEEEEEEecC-c
Confidence 46689999999999999875 1 13455555542233467999999999999998 67 99999999999 9
Q ss_pred eEEEeeccCcceecC----CcceEEEec----------CCCCccccccccccceeecCCeeecCC-CccEEEeCCC-CeE
Q 023283 164 PFSFSIAYHTYFAIS----DISEVRIEG----------LETLDYLDNLCQRERFTEQGDALTFES-EIDRVYLSSS-DKI 227 (284)
Q Consensus 164 ~~~~~~g~HpYF~~~----~~~~~~v~g----------l~~~~~~d~~~~~~~~~~~~~~~~~~~-~~D~vy~~~~-~~~ 227 (284)
+|||++|+||||+++ +...++|.+ ++++++.+......++.+ ...+.... .+|++|.... ...
T Consensus 149 ~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~-~~~i~~~~~~~D~~f~~~~~~~~ 227 (300)
T PF01263_consen 149 PMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQ-GRPIGDDIPGLDHCFVLDPPGRP 227 (300)
T ss_dssp EEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSS-SEEECSSCTCEEEEEEESSSSEE
T ss_pred cEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCcccccc-CeeecccccccceEEEcCCCccE
Confidence 999999999999999 555666643 222222221111122221 22222222 6899999876 556
Q ss_pred EEEeCCCCcEEEEEec-CCCCEEEEcCCCC-----CCCcc-----c---CCccccceEEeecchhccccc
Q 023283 228 AILDHERKRTFVIHKE-GLPDWCGIHGRGN-----QNQWQ-----I---LEMKSTGTCFVLMGQQLRNRL 283 (284)
Q Consensus 228 ~l~d~~~~r~i~i~~~-~~~~~vvw~p~~~-----~~pw~-----~---~~~~~~g~~~~~~g~~~~~~~ 283 (284)
.+.+...+++|+|+.. ++|++|||+|... .+|+. . .+-...|.+.|+|||+++..+
T Consensus 228 ~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~ 297 (300)
T PF01263_consen 228 VIRLRSPGSGISLEFSTSFPWLVVWTPGFDPKYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFST 297 (300)
T ss_dssp EEEEETTTEEEEEEEEESSSEEEEEEETTSSTEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEE
T ss_pred EEEeecccceEEEEecCCCCcEEEECCCCcccccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEE
Confidence 6666666777777654 6889999999654 34444 1 122245689999999988653
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.2e-33 Score=252.32 Aligned_cols=236 Identities=19% Similarity=0.260 Sum_probs=179.2
Q ss_pred EEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC------------------CCCCceeecc
Q 023283 35 SAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG------------------SLEQHGFARN 96 (284)
Q Consensus 35 ~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~------------------~~~~HGfar~ 96 (284)
+++|..+||+|.||+.+++.++||.++........+.++|.|+||||+||+. .+++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 6788999999999998544899999887554334567899999999999873 3589999999
Q ss_pred CCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 97 RSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 97 ~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
++|+++..+ + +..+|+|++..++... +|||+|+++++|+|.+ ++|+++++|+|+++++|||++|+||||+
T Consensus 82 ~~w~v~~~~------~--~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~-~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 151 (284)
T cd01081 82 LPWRVVATD------E--EEASVTLSYDLNDGPG-GYPFPLELTVTYTLDA-DTLTITFTVTNLGDEPMPFGLGWHPYFG 151 (284)
T ss_pred CcEEEEEec------c--CCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeC-CeEEEEEEEEeCCCCCcceeeecCceEe
Confidence 999998764 1 1346888887665544 8999999999999997 7999999999999999999999999999
Q ss_pred cCCc--ceEEEecCCCCccccc----cccccc-----eeecCCeeec-CCCccEEEeCCC-----CeEEEEeCCCCcEEE
Q 023283 177 ISDI--SEVRIEGLETLDYLDN----LCQRER-----FTEQGDALTF-ESEIDRVYLSSS-----DKIAILDHERKRTFV 239 (284)
Q Consensus 177 ~~~~--~~~~v~gl~~~~~~d~----~~~~~~-----~~~~~~~~~~-~~~~D~vy~~~~-----~~~~l~d~~~~r~i~ 239 (284)
++.. .+++|.... ..+.+. +..+.. +.. .....+ ...+|++|.... ..+.|.++..++.|+
T Consensus 152 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~ 229 (284)
T cd01081 152 LPGVAIEDLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDF-RLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVE 229 (284)
T ss_pred cCCCcccceEEEecC-CEEEecCCccCCCCccCCcccccc-cCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEE
Confidence 9864 566654332 222211 111100 000 111223 347999997654 278899998889999
Q ss_pred EEecCCCCEEEEcCC--CC----CCCccc-C---CccccceEEee-cchhccccc
Q 023283 240 IHKEGLPDWCGIHGR--GN----QNQWQI-L---EMKSTGTCFVL-MGQQLRNRL 283 (284)
Q Consensus 240 i~~~~~~~~vvw~p~--~~----~~pw~~-~---~~~~~g~~~~~-~g~~~~~~~ 283 (284)
+.+.. ++++||+|. .. +|||.. . +.+..|.+.|+ |||+.+.++
T Consensus 230 ~~~~~-~~~~v~t~~~~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 230 FETGW-PFWQVYTGDGGRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EeCCC-CEEEEECCCCCcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 98766 999999997 33 999996 3 44568999999 999988664
No 9
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=2.7e-32 Score=248.65 Aligned_cols=239 Identities=15% Similarity=0.154 Sum_probs=178.7
Q ss_pred CceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----------C---
Q 023283 22 GIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------S--- 87 (284)
Q Consensus 22 g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~-----------~--- 87 (284)
.-.+++|+|+. ++++|..+||.|.+|+.. |.++++..+.+.+. +..+| ++|+||.||+. +
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---LAHLG-KVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---ccccc-cEecccCCeecCCEEEECCEEEECCC
Confidence 34578999986 999999999999999984 67888866654442 22234 68999999983 1
Q ss_pred ------CCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCC
Q 023283 88 ------LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNIN 161 (284)
Q Consensus 88 ------~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~ 161 (284)
.++||+++.+.|+|.+.. +.+++|++.+.+ ..+|||+|+++++|+|.++++|+++++++|.+
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~----------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~ 150 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT----------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNIG 150 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec----------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEECC
Confidence 249999999999997754 235777776543 36899999999999998546899999999999
Q ss_pred CCeEEEeeccCcceecCC--cceEEE------------ecCCCCccccccccccceeecCCeeecC-CCccEEEeCCCC-
Q 023283 162 CKPFSFSIAYHTYFAISD--ISEVRI------------EGLETLDYLDNLCQRERFTEQGDALTFE-SEIDRVYLSSSD- 225 (284)
Q Consensus 162 ~~~~~~~~g~HpYF~~~~--~~~~~v------------~gl~~~~~~d~~~~~~~~~~~~~~~~~~-~~~D~vy~~~~~- 225 (284)
+++|||++|+||||+++. +.++++ ..+|++ ..+......+|.+ ...+. ..+|++|..+.+
T Consensus 151 ~~~~P~~~g~HpYFnl~~~~~~~~~L~~~a~~~~~~d~~~iPtg-~~~~~~~~~df~~---~~~l~~~~~D~~f~~~~~~ 226 (300)
T PRK15172 151 DVPAPYGVGIHPYLTCNLTSVDEYLLQLPANQVLAVDEHANPTT-LHHVDELDLDFSQ---AKKIAATKIDHTFKTANDL 226 (300)
T ss_pred CCceeeEEecCceEecCCCChhceEEEEeCCeEEecCCCcCCCc-cccCCCCCcCCCC---CeECCCCCccCEEEcCCCc
Confidence 999999999999999872 444433 234442 2222111223332 22333 379999998764
Q ss_pred -eEEEEeCCCCcEEEEEecCCCCEEEEcCCC--C----CCCcccC-Ccc--ccceEEeecchhccccc
Q 023283 226 -KIAILDHERKRTFVIHKEGLPDWCGIHGRG--N----QNQWQIL-EMK--STGTCFVLMGQQLRNRL 283 (284)
Q Consensus 226 -~~~l~d~~~~r~i~i~~~~~~~~vvw~p~~--~----~~pw~~~-~~~--~~g~~~~~~g~~~~~~~ 283 (284)
.++|.++.++++|++.+ +.+.+|||++.. . +|||... |.. +.|+++|+|||+++.++
T Consensus 227 ~~~~l~~~~~g~~l~~~~-~~~~~~vyt~~~~~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~ 293 (300)
T PRK15172 227 WEVRITHPQQALSVSLCS-DQPWLQIYSGEKLQRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFF 293 (300)
T ss_pred eEEEEEeCCCCeEEEEEc-CCCEEEEECCCCCCCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEE
Confidence 78999999999999986 679999999972 2 9998853 444 36899999999998765
No 10
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=3.3e-31 Score=239.77 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=166.5
Q ss_pred cEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----------CCC---------Ccee
Q 023283 34 ASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----------SLE---------QHGF 93 (284)
Q Consensus 34 ~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~-----------~~~---------~HGf 93 (284)
++++|..+||.|++|+. +|+++||..+..... .+. .| ++|||+.||+. +++ +|||
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~~--~~~-~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEVP--PGA-AG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccCC--ccc-cc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 36889999999999998 578999977654321 122 33 69999999983 233 9999
Q ss_pred eccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCc
Q 023283 94 ARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHT 173 (284)
Q Consensus 94 ar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~Hp 173 (284)
+|.+.|++++.+ ..+++|++.+. ...+|||+|+++++|+|.+ ++|+++++|+|+++++|||++|+||
T Consensus 76 ~~~~~w~v~~~~----------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (284)
T cd09022 76 VRWADWQLVEHT----------DSSVTLRTRIP--PQPGYPFTLELTVTYELDD-DGLTVTLTATNVGDEPAPFGVGFHP 142 (284)
T ss_pred eecceEEEeecc----------CCeEEEEEEeC--CccCCCceEEEEEEEEEcC-CcEEEEEEEEeCCCCCeEeeeEecc
Confidence 999999998764 23577777753 3578999999999999997 7899999999999999999999999
Q ss_pred ceecCCc--ceEEEe------------cCCCCccccccccccceeecCCeeecC-CCccEEEeCCC------CeEEEEeC
Q 023283 174 YFAISDI--SEVRIE------------GLETLDYLDNLCQRERFTEQGDALTFE-SEIDRVYLSSS------DKIAILDH 232 (284)
Q Consensus 174 YF~~~~~--~~~~v~------------gl~~~~~~d~~~~~~~~~~~~~~~~~~-~~~D~vy~~~~------~~~~l~d~ 232 (284)
||++++. .+++|. .++++. ........+|++ ...+. ..+|++|.... ..++|.++
T Consensus 143 yF~l~~~~~~~~~L~~~a~~~~~~d~~~lptg~-~~~~~~~~df~~---~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~ 218 (284)
T cd09022 143 YLSAGGAPLDECTLTLPADTWLPVDERLLPTGT-EPVAGTPYDFRT---GRRLGGTALDTAFTDLTRDADGRARARLTGP 218 (284)
T ss_pred eEecCCCCcccEEEEEECceEEecCCccCCCcC-cCCCCCCccCcC---CccccCccccccccccccCCCCcEEEEEECC
Confidence 9999853 454432 233322 111011112221 11222 37999998643 26888888
Q ss_pred CCCcEEEEEe-cCCCCEEEEcCCC------C----CCCccc-CCcc--ccceEEeecchhccccc
Q 023283 233 ERKRTFVIHK-EGLPDWCGIHGRG------N----QNQWQI-LEMK--STGTCFVLMGQQLRNRL 283 (284)
Q Consensus 233 ~~~r~i~i~~-~~~~~~vvw~p~~------~----~~pw~~-~~~~--~~g~~~~~~g~~~~~~~ 283 (284)
.+ +.|+|.+ .++|.++||+|.. . +|||.. .|.. +.|.++|+|||+++.++
T Consensus 219 ~~-~~l~l~~~~~~~~~~vyt~~~~~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~ 282 (284)
T cd09022 219 DG-RGVELWADESFPWVQVFTADTLPPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASW 282 (284)
T ss_pred CC-CEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEE
Confidence 76 8999998 4689999999962 2 999985 3444 46899999999988765
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.97 E-value=4.6e-29 Score=229.99 Aligned_cols=240 Identities=15% Similarity=0.194 Sum_probs=171.6
Q ss_pred EEEECCCccEEEEeCCCeEEEEEEeCC--C--eEEEEeCC-CcccCCCCCccCccceeCCCCCCCC-----------CCC
Q 023283 26 VVLRNPRGASAKISLHGGQALSWRTER--G--EELLFTST-KAIFKPPHAVRGGIPICFPQFGNRG-----------SLE 89 (284)
Q Consensus 26 ~~L~~~~g~~~~V~~~GA~l~s~~~~~--g--~e~L~~~~-~~~~~~~~~irgG~pvlfP~~g~~~-----------~~~ 89 (284)
++|+|+++++++|..+||.|.||+.++ | +++||..+ .+.|....+.. -+++.|+.||+. +++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~--g~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYF--GATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCcc--CCcccCcCCeecCCEEEECCEEEEcc
Confidence 679998569999999999999998632 3 78999884 55554333332 234788998873 222
Q ss_pred -----------CceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEE
Q 023283 90 -----------QHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIR 158 (284)
Q Consensus 90 -----------~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~ 158 (284)
.|||+|. .|++...+ +.+|+|++.+++ ...+|||+|+++++|+|.++++|+++++++
T Consensus 80 ~Ne~~~~LHGg~~G~~~~-~w~~~~~~----------~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~ 147 (326)
T cd09019 80 ANEGPNHLHGGPKGFDKR-VWDVEEVE----------ENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEAT 147 (326)
T ss_pred CCCCCcccCCCCccccCc-EEeEEecc----------CCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEE
Confidence 3667775 99998764 457888888763 468999999999999998657899999999
Q ss_pred eCCCCeEEEeeccCcceecCC-----cceEE--E----------ecCCCCccccccccccceeecC---------Ceeec
Q 023283 159 NINCKPFSFSIAYHTYFAISD-----ISEVR--I----------EGLETLDYLDNLCQRERFTEQG---------DALTF 212 (284)
Q Consensus 159 N~~~~~~~~~~g~HpYF~~~~-----~~~~~--v----------~gl~~~~~~d~~~~~~~~~~~~---------~~~~~ 212 (284)
| +++|||++|+||||+++. +.++. + ..+|++...+......+|++.. .....
T Consensus 148 ~--~~~~p~~~g~HpyFnl~~~~~~~~~~~~L~~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~ 225 (326)
T cd09019 148 T--DKPTPVNLTNHSYFNLAGEGSGDILDHELQINADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKL 225 (326)
T ss_pred e--CCCeEecccceeeEecCCCCCCCccceEEEEecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhccc
Confidence 8 589999999999999983 33433 3 2455554433322222333210 00111
Q ss_pred CCCccEEEe--CC----CCeEEEEeCCCCcEEEEEecCCCCEEEEcCCC--------------C----CCCcccC---Cc
Q 023283 213 ESEIDRVYL--SS----SDKIAILDHERKRTFVIHKEGLPDWCGIHGRG--------------N----QNQWQIL---EM 265 (284)
Q Consensus 213 ~~~~D~vy~--~~----~~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~~--------------~----~~pw~~~---~~ 265 (284)
..++|++|. .+ ...++|.++.++++|+|.+ +.|.+|||++.. . +|||... |.
T Consensus 226 ~~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~ 304 (326)
T cd09019 226 GGGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYT-TQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNH 304 (326)
T ss_pred CCCcceEEEECCCCCccceeEEEEcCCCCcEEEEec-CCCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccc
Confidence 347999997 32 1368899999999999985 789999999831 1 8998854 44
Q ss_pred cccceEEeecchhcccc
Q 023283 266 KSTGTCFVLMGQQLRNR 282 (284)
Q Consensus 266 ~~~g~~~~~~g~~~~~~ 282 (284)
++.|.+.|.|||..+.+
T Consensus 305 ~~~g~~~L~pge~~~~~ 321 (326)
T cd09019 305 PNFPSIILRPGETYRHT 321 (326)
T ss_pred cCCCCeEECCCCEEEEE
Confidence 56789999999988754
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=223.67 Aligned_cols=245 Identities=18% Similarity=0.250 Sum_probs=170.2
Q ss_pred CCCceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCC-cccCCCCCccC-ccceeCCCCCCCC-----------
Q 023283 20 RNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTK-AIFKPPHAVRG-GIPICFPQFGNRG----------- 86 (284)
Q Consensus 20 ~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~-~~~~~~~~irg-G~pvlfP~~g~~~----------- 86 (284)
......+++.+..+..++|..+||.|++|+. +++++++..+. +.+. ..++ +.++|+|+.||+.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~---~~~~~~ga~l~p~anRI~~g~f~~~G~~y 84 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYP---ATRGYGGAILGPYANRISNGRFTLDGKTY 84 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhc---cccccccceecCccCcccCCEEEECCEEE
Confidence 4456788899988788889999999999998 67788765552 2221 1123 7788999999984
Q ss_pred C-------CCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEe
Q 023283 87 S-------LEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRN 159 (284)
Q Consensus 87 ~-------~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N 159 (284)
+ .++||+++..+|++.+... ++ ...++|.+.+. ..+|||+|+++++|+|.+ ++|+++++++|
T Consensus 85 ~L~~N~~~~~lHG~~~~~~~~v~~~~~------~~-~~~~~l~~~~~---~~gyP~~l~~~vtY~L~~-~~L~v~~~~~n 153 (308)
T COG2017 85 QLPPNEGGNALHGGARDFDWQVWEAEE------DD-NAEFSLVLRDG---EDGYPGNLEATVTYTLNE-DGLTVTYEVTN 153 (308)
T ss_pred EeCCCCCCccccCCccCCCeeEEEEEe------cc-CCEEEEEeccc---CCCCCceEEEEEEEEEcC-CCEEEEEEEEe
Confidence 2 3499999999999998752 11 22555555543 446999999999999998 56999999999
Q ss_pred CCCCeEEEeeccCcceecCCcce---EEEecCCCCcccc-----ccccc----cceeecCCeeecCCCccEEEeCCC---
Q 023283 160 INCKPFSFSIAYHTYFAISDISE---VRIEGLETLDYLD-----NLCQR----ERFTEQGDALTFESEIDRVYLSSS--- 224 (284)
Q Consensus 160 ~~~~~~~~~~g~HpYF~~~~~~~---~~v~gl~~~~~~d-----~~~~~----~~~~~~~~~~~~~~~~D~vy~~~~--- 224 (284)
.++++|||++|+||||+++...+ ... .....++. .++.+ ..... ...+.....+|+.|....
T Consensus 154 ~~~~~~p~~~g~HpYFnl~~~~~~~~~~~--~~~~~~l~~~~~~~ip~~~~~~~~~~~-~~~~~~~~~~d~~f~~~~~~~ 230 (308)
T COG2017 154 DGDEPTPFNLGNHPYFNLPGDGRLEHILA--IASDYYLPVDDEEPIPTGDIKREPKPL-EDDFAADDPYDHAFLLNGARG 230 (308)
T ss_pred CCCCcceecccccceEecCCCCCcccEEE--ecCCceEEcccCCCCCccccccccccc-ccccccccccccceeeccccC
Confidence 99999999999999999996532 111 01111111 01110 01110 011111112588886443
Q ss_pred --CeEEEEeCCCCcEEEEEecCCCCEEEEcC--C-CC----CCCcc-c---CCccccceEEeecchhccccc
Q 023283 225 --DKIAILDHERKRTFVIHKEGLPDWCGIHG--R-GN----QNQWQ-I---LEMKSTGTCFVLMGQQLRNRL 283 (284)
Q Consensus 225 --~~~~l~d~~~~r~i~i~~~~~~~~vvw~p--~-~~----~~pw~-~---~~~~~~g~~~~~~g~~~~~~~ 283 (284)
..+.|.++.++++|+|++ +.|.++||+. . +. +|||. . .|.++-+.+.|+|||+.+.++
T Consensus 231 ~~~~a~l~~~~~~~~l~v~t-~~p~~~~yt~~~~~~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~~~~~~ 301 (308)
T COG2017 231 LKPAARLYDPDSGLSLEVET-DEPFVQLYTGNFLAGRDGLCLEPQSGLPDAFNHPGFGLIVLEPGETYSAET 301 (308)
T ss_pred CcceEEEEcCCCCeEEEEEe-CCCeEEEEeCCCCCcCCeEEeeeccCCCCcCCCCCcccceeCCCCEEEEEE
Confidence 378999999999999996 4555555554 4 23 99999 3 666788889999999987653
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.95 E-value=1.2e-26 Score=214.73 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=171.9
Q ss_pred CceEEEEECCCccEEEEeCCCeEEEEEEeC--CC--eEEEEeCCC-cccCCCCCccCccceeCCCCCCCC----------
Q 023283 22 GIEQVVLRNPRGASAKISLHGGQALSWRTE--RG--EELLFTSTK-AIFKPPHAVRGGIPICFPQFGNRG---------- 86 (284)
Q Consensus 22 g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~--~g--~e~L~~~~~-~~~~~~~~irgG~pvlfP~~g~~~---------- 86 (284)
.+..++|+|+. ++++|..+||.|.||+.+ +| ++++...+. +.+....+. .|.. +.|+.||+.
T Consensus 8 ~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~-~Ga~-lgp~anRI~~g~~~~~G~~ 84 (337)
T PLN00194 8 KPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPY-FGAI-VGRVANRIKGAKFTLNGVT 84 (337)
T ss_pred eeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCc-cCCe-eCCCCCceeCCEEEECCEE
Confidence 35678999986 999999999999999862 34 567765443 223222333 4443 999999973
Q ss_pred --------CCCCceeec---cCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEE
Q 023283 87 --------SLEQHGFAR---NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALIS 155 (284)
Q Consensus 87 --------~~~~HGfar---~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~ 155 (284)
...+||+.+ .+.|+|.... ++++.+|+|.+.+.+ ...+|||+|+++++|+|.++++|++++
T Consensus 85 y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~-------~~~~~~v~~~l~~~~-~~~gyP~~~~~~v~Y~L~~~~~L~i~~ 156 (337)
T PLN00194 85 YKLPPNNGPNSLHGGPKGFSKVVWEVAKYK-------KGEKPSITFKYHSFD-GEEGFPGDLSVTVTYTLLSSNTLRLDM 156 (337)
T ss_pred EEeccCCCCcccCCCCcccCceEEeEEEec-------cCCCcEEEEEEECCC-cCCCCCEEEEEEEEEEECCCCeEEEEE
Confidence 124697543 4899998764 112467999998753 478999999999999998547899999
Q ss_pred EEEeCCCCeEEEeeccCcceecCC-----cce--EEE----------ecCCCCccccccccccceeecCCeee-----cC
Q 023283 156 RIRNINCKPFSFSIAYHTYFAISD-----ISE--VRI----------EGLETLDYLDNLCQRERFTEQGDALT-----FE 213 (284)
Q Consensus 156 ~v~N~~~~~~~~~~g~HpYF~~~~-----~~~--~~v----------~gl~~~~~~d~~~~~~~~~~~~~~~~-----~~ 213 (284)
+++|. +++|||++|+||||+++. +.+ +++ +++|+++..+......+|++. ..+. ..
T Consensus 157 ~~~n~-~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~-~~l~~~~~~~~ 234 (337)
T PLN00194 157 EAKPL-NKATPVNLAQHTYWNLAGHNSGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTP-KKIGSRINELP 234 (337)
T ss_pred EEEEC-CCCeEEEccccceEEcCCCCCCCcCCeEEEEecCCEEEeCCCcCcCCceeeCCCCCcccCCC-cCcchhhcccc
Confidence 99999 999999999999999973 333 333 345665544332223344321 1111 11
Q ss_pred CCccEEEeCC-------CCeEEEEeCCCCcEEEEEecCCCCEEEEcCC----------------CC--CCCcccCCc---
Q 023283 214 SEIDRVYLSS-------SDKIAILDHERKRTFVIHKEGLPDWCGIHGR----------------GN--QNQWQILEM--- 265 (284)
Q Consensus 214 ~~~D~vy~~~-------~~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~----------------~~--~~pw~~~~~--- 265 (284)
.++|++|... ...++|.++.++++|+|.+ +.|.++||++. .. +||+...|.
T Consensus 235 ~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~ 313 (337)
T PLN00194 235 KGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWT-NAPGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQ 313 (337)
T ss_pred CCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEe-CCCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccC
Confidence 3799999732 2258899998899999996 66999999754 11 788875444
Q ss_pred cccceEEeecchhccc
Q 023283 266 KSTGTCFVLMGQQLRN 281 (284)
Q Consensus 266 ~~~g~~~~~~g~~~~~ 281 (284)
++-|.+.|.|||....
T Consensus 314 ~~~~~~~L~pge~~~~ 329 (337)
T PLN00194 314 PNFPSVVVNPGEKYKH 329 (337)
T ss_pred CCCCCeEECCCCEEEE
Confidence 4457889999997654
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.95 E-value=5.2e-26 Score=210.31 Aligned_cols=244 Identities=16% Similarity=0.229 Sum_probs=171.8
Q ss_pred ceEEEEECCCccEEEEeCCCeEEEEEEeC---CCeEEEEeCC-CcccCCCCCccCccceeCCCCCCCC------------
Q 023283 23 IEQVVLRNPRGASAKISLHGGQALSWRTE---RGEELLFTST-KAIFKPPHAVRGGIPICFPQFGNRG------------ 86 (284)
Q Consensus 23 ~~~~~L~~~~g~~~~V~~~GA~l~s~~~~---~g~e~L~~~~-~~~~~~~~~irgG~pvlfP~~g~~~------------ 86 (284)
+..++|+|.++++++|..+||.|.||+.+ ..++++...+ .+.+....+. .|+ ++.|+.||+.
T Consensus 4 v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~-~Ga-~igp~anRI~~g~f~~~G~~y~ 81 (335)
T TIGR02636 4 AQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAY-LGA-TVGRYANRIANGSFEIDGETYQ 81 (335)
T ss_pred eEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCc-cCC-CcCCCCceecCCEEEECCEEEE
Confidence 56889999888999999999999999852 2356776544 3333322233 344 3789999973
Q ss_pred ------CCCCceee---ccCCeEEec-cCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEE
Q 023283 87 ------SLEQHGFA---RNRSWVIDD-NPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISR 156 (284)
Q Consensus 87 ------~~~~HGfa---r~~~W~v~~-~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~ 156 (284)
...+||+. +.+.|++.. .+ ..+|+|.+.+.+. ..+||++++++++|+|+++++|+++++
T Consensus 82 L~~N~~~n~lHGg~~G~~~~~W~v~~~~~----------~~~v~l~~~~~~~-~~gyPg~l~~~vtY~L~~~~~L~i~~~ 150 (335)
T TIGR02636 82 LSINQGGNCLHGGPEGFDKRRWNIEELQE----------EVQVKFSLESPDG-DQGFPGNLTVSVTYTLTDDNELTIEYE 150 (335)
T ss_pred eccCCCCcccCCCCccccccEEeEeeecC----------CCEEEEEEECCCc-CCCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 23599998 778999976 43 3478898887543 689999999999999965578999999
Q ss_pred EEeCCCCeEEEeeccCcceecCC------cce--EEE----------ecCCCCccccccccccceeecC---Ce------
Q 023283 157 IRNINCKPFSFSIAYHTYFAISD------ISE--VRI----------EGLETLDYLDNLCQRERFTEQG---DA------ 209 (284)
Q Consensus 157 v~N~~~~~~~~~~g~HpYF~~~~------~~~--~~v----------~gl~~~~~~d~~~~~~~~~~~~---~~------ 209 (284)
++ +++++||++++||||+++. +.+ ++| +.+|+++..+......+|++.. ..
T Consensus 151 a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~ 228 (335)
T TIGR02636 151 AT--TDKATPFNLTNHVYFNLDGADAGSDVLSHELQLNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQ 228 (335)
T ss_pred EE--ECCceEEeccccceEEcCCCCCCCChhceEEEEECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccccc
Confidence 86 7899999999999999975 222 333 3466665544433333443210 00
Q ss_pred eecCCCccEEEeCC------CCeEEEEeCCCCcEEEEEecCCCCEEEEcCC---------C-------C--CCCcccCCc
Q 023283 210 LTFESEIDRVYLSS------SDKIAILDHERKRTFVIHKEGLPDWCGIHGR---------G-------N--QNQWQILEM 265 (284)
Q Consensus 210 ~~~~~~~D~vy~~~------~~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~---------~-------~--~~pw~~~~~ 265 (284)
.....++|++|.-. ...++|.++.++++|+|.+ +.|.++||++. + . +||+...+-
T Consensus 229 ~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~ 307 (335)
T TIGR02636 229 QQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFT-TQPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDS 307 (335)
T ss_pred cccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEec-CCCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCc
Confidence 11112799999732 1257899999999999995 78999999972 1 1 788876444
Q ss_pred c---ccce--EEeecchhcccc
Q 023283 266 K---STGT--CFVLMGQQLRNR 282 (284)
Q Consensus 266 ~---~~g~--~~~~~g~~~~~~ 282 (284)
+ +-|. ++|+|||....+
T Consensus 308 ~n~~~~~~~~~~L~pge~~~~~ 329 (335)
T TIGR02636 308 PNHPEWGDISCILSPGQEYQHQ 329 (335)
T ss_pred ccccCCCCCceEECCCCEEEEE
Confidence 4 4443 359999987643
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.93 E-value=5.3e-24 Score=197.11 Aligned_cols=243 Identities=16% Similarity=0.217 Sum_probs=166.1
Q ss_pred CceEEEEECCCccEEEEeCCCeEEEEEEe--CCC--eEEEEeC-CCcccCCCCCccCccceeCCCCCCCC----------
Q 023283 22 GIEQVVLRNPRGASAKISLHGGQALSWRT--ERG--EELLFTS-TKAIFKPPHAVRGGIPICFPQFGNRG---------- 86 (284)
Q Consensus 22 g~~~~~L~~~~g~~~~V~~~GA~l~s~~~--~~g--~e~L~~~-~~~~~~~~~~irgG~pvlfP~~g~~~---------- 86 (284)
.+..++|+|.++++++|..+||.|.||+. ++| .+++... +.+.|....+. .|+ ++.|+.||+.
T Consensus 8 ~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~-~Ga-~iGr~anRI~~g~f~~~G~~ 85 (342)
T PRK11055 8 PYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAY-LGA-SVGRYANRIANSRFTLDGET 85 (342)
T ss_pred eEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCc-cCc-eeCCcCCcccCCEEEECCEE
Confidence 36788999988899999999999999986 245 5777544 33333322333 333 5889999983
Q ss_pred --------CCCCceee---ccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEE
Q 023283 87 --------SLEQHGFA---RNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALIS 155 (284)
Q Consensus 87 --------~~~~HGfa---r~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~ 155 (284)
...+||.. +.+.|++...+ ..+|+|++.+.+ ..++||++++++++|+|+++++|++++
T Consensus 86 y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~----------~~~v~l~~~~~~-g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 86 YQLSPNQGGNQLHGGPEGFDKRRWQIVNQN----------DRQVTFSLSSPD-GDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEcccCCCCcccCCCCcccCCcEEEEEEcc----------CCEEEEEEECCC-cCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 23589985 46799997654 346888888753 467999999999999998756788877
Q ss_pred EEEeCCCCeEEEeeccCcceecCC------cce--EEE----------ecCCCCccccccccccceeecCCeee------
Q 023283 156 RIRNINCKPFSFSIAYHTYFAISD------ISE--VRI----------EGLETLDYLDNLCQRERFTEQGDALT------ 211 (284)
Q Consensus 156 ~v~N~~~~~~~~~~g~HpYF~~~~------~~~--~~v----------~gl~~~~~~d~~~~~~~~~~~~~~~~------ 211 (284)
++ ++++++||++++||||+++. +.+ ++| +.+|+++..+......+|++. ..+.
T Consensus 155 ~a--~~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~-~~l~~~~~~~ 231 (342)
T PRK11055 155 RA--TVDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQP-KTIAQDFLAD 231 (342)
T ss_pred EE--EcCCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCC-cCcCcccccc
Confidence 65 57999999999999999974 212 333 356766554432333344431 1111
Q ss_pred ----cCCCccEEEeCC-----C-CeEEEEeCCCCcEEEEEecCCCCEEEEcCCC------C------------CCCcccC
Q 023283 212 ----FESEIDRVYLSS-----S-DKIAILDHERKRTFVIHKEGLPDWCGIHGRG------N------------QNQWQIL 263 (284)
Q Consensus 212 ----~~~~~D~vy~~~-----~-~~~~l~d~~~~r~i~i~~~~~~~~vvw~p~~------~------------~~pw~~~ 263 (284)
...++|++|... . ..+++.++.++++|+|.+ +.|.++||++.. . +||=...
T Consensus 232 ~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~P 310 (342)
T PRK11055 232 DDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYT-TAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLP 310 (342)
T ss_pred hhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEc-CCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCC
Confidence 113799999632 1 247888988999999995 889999999531 0 3333323
Q ss_pred Ccc---cc--ceEEeecchhccc
Q 023283 264 EMK---ST--GTCFVLMGQQLRN 281 (284)
Q Consensus 264 ~~~---~~--g~~~~~~g~~~~~ 281 (284)
|.+ +- +-++|.|||...-
T Consensus 311 da~n~~~f~~~~~~L~pg~~y~~ 333 (342)
T PRK11055 311 DSPNHPEWPQPDCILKPGEEYRS 333 (342)
T ss_pred CcccccCCCCCCeEECCCCEEEE
Confidence 333 22 4789999997653
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.90 E-value=6e-22 Score=184.58 Aligned_cols=222 Identities=10% Similarity=0.053 Sum_probs=156.7
Q ss_pred cCCCceEEEEECCCccEEEEeCCCeEEEEEEe--CC-C--eEEEEeCC--CcccCCCCCccCccceeCCCCCCCC-----
Q 023283 19 DRNGIEQVVLRNPRGASAKISLHGGQALSWRT--ER-G--EELLFTST--KAIFKPPHAVRGGIPICFPQFGNRG----- 86 (284)
Q Consensus 19 ~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~--~~-g--~e~L~~~~--~~~~~~~~~irgG~pvlfP~~g~~~----- 86 (284)
.++....++|+|.. ++++|..+||.|+|++. ++ | ++++...+ .+.|....+. .|++ +.|+.||+.
T Consensus 9 ~~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y-~Ga~-iGr~AnRI~~G~f~ 85 (376)
T PTZ00485 9 PYGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDY-MGAT-VGRCAGRVAGGVFT 85 (376)
T ss_pred ecCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCc-cCcE-eCCCCCeEECCEEE
Confidence 36678899999997 99999999999999986 22 5 57776553 3344323333 4554 788899873
Q ss_pred -----------------CCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEc--C
Q 023283 87 -----------------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLA--A 147 (284)
Q Consensus 87 -----------------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~--~ 147 (284)
+.+.+||.+ +.|++.... +.+..+|+|.+.+. +..++||++++++++|+|. +
T Consensus 86 ldG~~YqL~~Neg~n~LHGG~~gf~~-~~W~v~~~~-------~~~~~~V~f~~~~~-dg~~GfPG~l~v~vtYtL~~~~ 156 (376)
T PTZ00485 86 LDGVKYYTQKNRGENTCHCGDDAYHK-KHWGMKLIE-------TANVIGVRFNYTSP-HMENGFPGELVSKVTYSIERSK 156 (376)
T ss_pred ECCEEEEccCCCCCcccCCCCCccce-eeeeEEEec-------cCCCcEEEEEEECC-CcCCCCCEEEEEEEEEEEecCC
Confidence 124467775 799985432 11145799999874 3578999999999999996 2
Q ss_pred CCcEEEE---EEEEeCCCCeEEEeeccCcceecCC-----------------cc--eEEE----------ecCCCCcccc
Q 023283 148 DGNLALI---SRIRNINCKPFSFSIAYHTYFAISD-----------------IS--EVRI----------EGLETLDYLD 195 (284)
Q Consensus 148 ~~~L~~~---~~v~N~~~~~~~~~~g~HpYF~~~~-----------------~~--~~~v----------~gl~~~~~~d 195 (284)
+++|+++ ++++|++++++||++++|+||+++. +. .++| +.+|+++.++
T Consensus 157 ~~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~~de~~IPTG~i~~ 236 (376)
T PTZ00485 157 PNVLKTIYDSYIPETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAEADRMAIPTGEFLS 236 (376)
T ss_pred CCEEEEEEEEEeccccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEEeCcccCccCceec
Confidence 4789999 7888999999999999999999963 22 2343 3567776554
Q ss_pred ccccccceeecC---Ceee----c---CCCccEEEeCCC-------CeEEEEeCCCCcEEEEEecCCCCEEEEcC
Q 023283 196 NLCQRERFTEQG---DALT----F---ESEIDRVYLSSS-------DKIAILDHERKRTFVIHKEGLPDWCGIHG 253 (284)
Q Consensus 196 ~~~~~~~~~~~~---~~~~----~---~~~~D~vy~~~~-------~~~~l~d~~~~r~i~i~~~~~~~~vvw~p 253 (284)
......+|++.. ..+. + .+++|++|.-.. ..+++.++.++++|+|.+ +.|.++||+.
T Consensus 237 v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T-~~P~~qiYT~ 310 (376)
T PTZ00485 237 VEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYS-TFPCMWVYTA 310 (376)
T ss_pred cCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEE-CCCEEEEECC
Confidence 433333343211 1110 1 137999996421 147899999999999995 8999999995
No 17
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.9e-16 Score=140.67 Aligned_cols=222 Identities=16% Similarity=0.227 Sum_probs=146.7
Q ss_pred ecCCCceEEEEECCCccEEEEeCCCeEEEEEEeC--CC--eEEEEe-CCCcccCCCCCccCccceeCCCCCCCC------
Q 023283 18 KDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE--RG--EELLFT-STKAIFKPPHAVRGGIPICFPQFGNRG------ 86 (284)
Q Consensus 18 ~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~--~g--~e~L~~-~~~~~~~~~~~irgG~pvlfP~~g~~~------ 86 (284)
++.+-+..++|.++.+++|.|..+||.|+|++.. .| .+++.. .+-+.|........|.. +--+.+|++
T Consensus 15 ~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGat-vGRvANRI~~G~F~l 93 (353)
T KOG1604|consen 15 DQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGAT-VGRVANRIAKGKFSL 93 (353)
T ss_pred cccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecce-ehhhhhhcccceEEE
Confidence 4456678899999999999999999999999863 33 356543 33344433221112221 112223331
Q ss_pred ----------------CCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCc
Q 023283 87 ----------------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGN 150 (284)
Q Consensus 87 ----------------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~ 150 (284)
+.++-||.+ ..|++..... ...++|...+ ++++++||++..++++|+|..++.
T Consensus 94 dgk~y~lt~N~g~n~lHgg~~gf~~-~~w~v~~~~~---------~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n~ 162 (353)
T KOG1604|consen 94 DGKPYKLTVNNGKNTLHGGIKGFDK-VIWEVVKHQP---------DGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVANR 162 (353)
T ss_pred CCceEEecccCCCccccCCcccccc-eEEEEEEecC---------CCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCCe
Confidence 234556776 7899998752 1226788877 567899999999999999998788
Q ss_pred EEEEEEEEeCCCCeEEEeeccCcceecCC-----cc--eEEEe----------cCCCCccccccccccceeec---CCee
Q 023283 151 LALISRIRNINCKPFSFSIAYHTYFAISD-----IS--EVRIE----------GLETLDYLDNLCQRERFTEQ---GDAL 210 (284)
Q Consensus 151 L~~~~~v~N~~~~~~~~~~g~HpYF~~~~-----~~--~~~v~----------gl~~~~~~d~~~~~~~~~~~---~~~~ 210 (284)
|.+.++.+-. ++++|++++.|+|||+.. +. +++|. .+|+++..+......+|++. ++.+
T Consensus 163 l~i~~~A~~~-~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~ 241 (353)
T KOG1604|consen 163 LLIMMEATAL-DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVLGDRI 241 (353)
T ss_pred eeeeehhhcc-CCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeeccccc
Confidence 8888765433 789999999999999983 22 34442 35666655433333333221 1111
Q ss_pred -ecC--CCccEEEeCC---C-----CeEEEEeCCCCcEEEEEecCCCCEEEEcC
Q 023283 211 -TFE--SEIDRVYLSS---S-----DKIAILDHERKRTFVIHKEGLPDWCGIHG 253 (284)
Q Consensus 211 -~~~--~~~D~vy~~~---~-----~~~~l~d~~~~r~i~i~~~~~~~~vvw~p 253 (284)
.|. .+.|..|.-. + ..+.+.++.++|.+.|.+ +.|.+.+|+.
T Consensus 242 ~~~~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTg 294 (353)
T KOG1604|consen 242 KQFECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTG 294 (353)
T ss_pred cccccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEe-CCCcEEEEec
Confidence 123 3577777522 1 257889999999999995 8999999995
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.73 E-value=5.4e-17 Score=147.02 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=149.4
Q ss_pred EeCCCeEEEEEEeCCCeEEEEeCCCccc-----C--CC---CCccCcccee--CCCCCCC-----CCCCCceeeccCCeE
Q 023283 38 ISLHGGQALSWRTERGEELLFTSTKAIF-----K--PP---HAVRGGIPIC--FPQFGNR-----GSLEQHGFARNRSWV 100 (284)
Q Consensus 38 V~~~GA~l~s~~~~~g~e~L~~~~~~~~-----~--~~---~~irgG~pvl--fP~~g~~-----~~~~~HGfar~~~W~ 100 (284)
+...|..|.+++. +|.++.|.++...- . +. ...-||.-.- ++++|.- ..+++||+.++.+|+
T Consensus 5 lp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~p~~ 83 (284)
T cd09023 5 LPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNTPAE 83 (284)
T ss_pred cccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCCCcc
Confidence 3578999998887 48999998863221 1 00 0112333333 4444432 256899999999999
Q ss_pred EeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcceecCC-
Q 023283 101 IDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD- 179 (284)
Q Consensus 101 v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~~~~- 179 (284)
++.... ++++...|++.....+....+|||.++.+++|+|.+ ++|+++++|+|+|+++||+++++|+||..+-
T Consensus 84 ~~~~~~-----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p~l 157 (284)
T cd09023 84 LVGVEE-----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNEGFRPTPHMLLYHVNFGYPLL 157 (284)
T ss_pred eEEEEe-----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeCCCCCCcceEEeeEEcCCccc
Confidence 987641 111244566655543334568999999999999987 7999999999999999999999999998752
Q ss_pred --cceEEEec---CCCCccccccccccceeecCCeeecCCCccEEEeCC-------CCeEEEEeCCCCcEEEEEec--CC
Q 023283 180 --ISEVRIEG---LETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSS-------SDKIAILDHERKRTFVIHKE--GL 245 (284)
Q Consensus 180 --~~~~~v~g---l~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~-------~~~~~l~d~~~~r~i~i~~~--~~ 245 (284)
..++.+.. ++...... .+...+.....+ -....+.+|... ...+.|.++..+..+.|..+ .+
T Consensus 158 ~~~~~l~~p~~~~~p~~~~~~--~~~~~~~~~~~p--~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~~~ 233 (284)
T cd09023 158 DEGARLEIPSKEVTPRDAHAA--EGLASWNTYLAP--TPGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTDTL 233 (284)
T ss_pred CCCCEEEecccccccCChhhc--ccccccccccCC--CCCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehhhC
Confidence 23344321 12111100 000000000000 011234444321 13688888877777777765 49
Q ss_pred CCEEEEcCCCC------CCCcccC-C-----ccccceEEeecchhccccc
Q 023283 246 PDWCGIHGRGN------QNQWQIL-E-----MKSTGTCFVLMGQQLRNRL 283 (284)
Q Consensus 246 ~~~vvw~p~~~------~~pw~~~-~-----~~~~g~~~~~~g~~~~~~~ 283 (284)
|++++|+..+. +||+... + -+..+++.|+|||+.+-++
T Consensus 234 p~~~~W~~~~~~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 234 PYLTQWKNTGAGAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred CHHHHHhccCCCccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 99999997543 9999852 1 2358999999999987664
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.01 E-value=7.1e-10 Score=101.24 Aligned_cols=252 Identities=14% Similarity=0.150 Sum_probs=127.4
Q ss_pred CCceEEEEECCCccEEEEe-CCCeEEEEEEeCCCeEEEEeCCCcccCCCCCc--cCcc----------cee-CCCCCCCC
Q 023283 21 NGIEQVVLRNPRGASAKIS-LHGGQALSWRTERGEELLFTSTKAIFKPPHAV--RGGI----------PIC-FPQFGNRG 86 (284)
Q Consensus 21 ~g~~~~~L~~~~g~~~~V~-~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~i--rgG~----------pvl-fP~~g~~~ 86 (284)
.|+..++|+|+.+++++|. ..|..|.+... +|.++-|.++.. ...+..+ .+|. .-| +..+|.-.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~-~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~ 79 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFG-LVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPS 79 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S------GGG--HHHHTGGGGT---SEEEEEES--SS-E
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCc-CCCCccccccCCcchhhcccchheeeccccCCCCC
Confidence 5889999999778888876 79999999988 589999988653 1111110 0111 011 11122211
Q ss_pred -----CCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEc-CCCcEEEEEEEEeC
Q 023283 87 -----SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLA-ADGNLALISRIRNI 160 (284)
Q Consensus 87 -----~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~-~~~~L~~~~~v~N~ 160 (284)
.++.||-..+.+|+.+.... ++++...+.++=...+ ...|-..+.++-++++. +.+.|+|+.+|+|.
T Consensus 80 ~~~g~~~~LHG~i~~~Pa~~v~~~~-----~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~ 152 (302)
T PF14486_consen 80 EDDGETYPLHGRISNTPAEHVWLEI-----WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGSNTIRIEDRVTNL 152 (302)
T ss_dssp EETTEEE-TTBSGGGS--SEEEEEE-----ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-
T ss_pred CcCCccccccccccCCCcceEEEEE-----ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCCcEEEEEEEEEEC
Confidence 36899999999997554431 1111334444322211 23565667777777763 23789999999999
Q ss_pred CCCeEEEeeccCcceecC---CcceEEEecCCCCccccccccc-cceeecCCeeecCCCccEEEeCC-----CC--eEEE
Q 023283 161 NCKPFSFSIAYHTYFAIS---DISEVRIEGLETLDYLDNLCQR-ERFTEQGDALTFESEIDRVYLSS-----SD--KIAI 229 (284)
Q Consensus 161 ~~~~~~~~~g~HpYF~~~---~~~~~~v~gl~~~~~~d~~~~~-~~~~~~~~~~~~~~~~D~vy~~~-----~~--~~~l 229 (284)
+..|+|+.+.+|.=|..+ +..++.........+.+....+ ..+..-.. +-...-+.||... .+ .+.|
T Consensus 153 ~~~p~p~m~lyH~N~G~pll~eg~ri~~p~~~~~~~~~~a~~~~~~~~~~~~--P~~~~~E~Vy~~~~~~d~~G~~~~~l 230 (302)
T PF14486_consen 153 GFQPMPLMYLYHMNFGYPLLDEGARIVAPTKEVTPRDDRAAEGIADWDRMPA--PQPGFPEQVYFHDLLADEDGWAHAAL 230 (302)
T ss_dssp SSS-EEEEEEEEEEE-TTT-STT-EEE--EEEEEESSGGGGGGSTTTTB-----S-TT---EEEEEEE---TTSEEEEEE
T ss_pred CCCCchhHHhhhhccCccccCCCcEEEcCcccccCCchhhhcCCccceecCC--CCCCCCcEEEEecccccCCCcEEEEE
Confidence 999999999999988877 4444442111111111111110 01110000 0011245566422 22 3778
Q ss_pred EeCCCCcEEEEEe--cCCCCEEEEcCCCC------CCCcccCC------ccccceEEeecchhccccc
Q 023283 230 LDHERKRTFVIHK--EGLPDWCGIHGRGN------QNQWQILE------MKSTGTCFVLMGQQLRNRL 283 (284)
Q Consensus 230 ~d~~~~r~i~i~~--~~~~~~vvw~p~~~------~~pw~~~~------~~~~g~~~~~~g~~~~~~~ 283 (284)
.++..+..+.|+. +.+|++.+|...+. +||..-.. -+.--+..|+|||+.+-++
T Consensus 231 ~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~~~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l 298 (302)
T PF14486_consen 231 VNPDGGLGFEVRFDTSQLPYLTQWKNYGGGEYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSL 298 (302)
T ss_dssp E-SSSS-EEEEEEETTTS-EEEEEEEES-T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEE
T ss_pred ECCCCCcEEEEEEchHHCChhHhheeCCCCEeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEE
Confidence 8988878887776 57999999987544 77776311 1135578999999987554
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=98.98 E-value=3.1e-09 Score=96.54 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=105.9
Q ss_pred CCCCceeeccCCeE----EeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcC-CCcEEEEEEEEeCC
Q 023283 87 SLEQHGFARNRSWV----IDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAA-DGNLALISRIRNIN 161 (284)
Q Consensus 87 ~~~~HGfar~~~W~----v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~-~~~L~~~~~v~N~~ 161 (284)
.+++||-..+.+|+ ++..+ + +...+++.-.. .....||++|+++.+|+|.. .+.|+|+++|+|.+
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d-------~-~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g 130 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGED-------A-SGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLS 130 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEec-------C-CCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEECC
Confidence 46899995555554 44322 1 12334443332 22468999999999999974 36899999999999
Q ss_pred CCeEEEeeccCcceecCCcceEEEec----------CCC-----Cccccc---ccc-ccceeecCCeeecCCCccEEEeC
Q 023283 162 CKPFSFSIAYHTYFAISDISEVRIEG----------LET-----LDYLDN---LCQ-RERFTEQGDALTFESEIDRVYLS 222 (284)
Q Consensus 162 ~~~~~~~~g~HpYF~~~~~~~~~v~g----------l~~-----~~~~d~---~~~-~~~~~~~~~~~~~~~~~D~vy~~ 222 (284)
+.|||+++++|+||......++...- ++. ..+..- ... ....+....+-. ..-..||..
T Consensus 131 ~~p~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~--~~~E~V~~~ 208 (293)
T cd09269 131 AQPMPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDL--YDPEIVFFA 208 (293)
T ss_pred CCCChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCC--CCccEEEEe
Confidence 99999999999999985444433211 110 011000 000 000000000000 012345542
Q ss_pred CC-------CeEEEEeCCCCcEEEEEe--cCCCCEEEEc--CCCC----C-CCccc------CCccccceEEeecchhcc
Q 023283 223 SS-------DKIAILDHERKRTFVIHK--EGLPDWCGIH--GRGN----Q-NQWQI------LEMKSTGTCFVLMGQQLR 280 (284)
Q Consensus 223 ~~-------~~~~l~d~~~~r~i~i~~--~~~~~~vvw~--p~~~----~-~pw~~------~~~~~~g~~~~~~g~~~~ 280 (284)
.. ..+.|.++..+ .+.++. +.+|++..|. -.+. . .|..- .--+.--++.|+|||+.+
T Consensus 209 ~~~~~~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~~~~v~~~~~PaT~~p~g~~~ar~~G~l~~L~pGe~~~ 287 (293)
T cd09269 209 DDLGKYTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNGDQQVAAFALPATCRPEGYLAAKEAGTLRTLAPGETRR 287 (293)
T ss_pred ecccccCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCCCcceEEEEccCCCCcCChHHHHHCCCcceeCCCCeEE
Confidence 21 36778887644 666654 5799999997 2222 3 46653 111135678999999986
Q ss_pred ccc
Q 023283 281 NRL 283 (284)
Q Consensus 281 ~~~ 283 (284)
-++
T Consensus 288 f~l 290 (293)
T cd09269 288 FSV 290 (293)
T ss_pred EEE
Confidence 543
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.47 E-value=0.0063 Score=54.95 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=76.2
Q ss_pred eEEEEECCCccEEEEe-CCCeEEEEEEeCCCeEEEEeCCCc---ccC---CCCCccCccceeC--CC-CCCCC--CCCCc
Q 023283 24 EQVVLRNPRGASAKIS-LHGGQALSWRTERGEELLFTSTKA---IFK---PPHAVRGGIPICF--PQ-FGNRG--SLEQH 91 (284)
Q Consensus 24 ~~~~L~~~~g~~~~V~-~~GA~l~s~~~~~g~e~L~~~~~~---~~~---~~~~irgG~pvlf--P~-~g~~~--~~~~H 91 (284)
.+++|+|+. .+++|. ..|+.|++|...+|.++|+..... ... ..-...||- -+| |+ .-|.. ..+--
T Consensus 5 ~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~Pd 82 (274)
T PF14315_consen 5 NCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPPD 82 (274)
T ss_pred eEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCCc
Confidence 689999997 888886 899999999886677788543211 111 111223333 234 22 11100 01112
Q ss_pred eeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCC-cEEEEEEEEeCCCCeEEEee
Q 023283 92 GFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADG-NLALISRIRNINCKPFSFSI 169 (284)
Q Consensus 92 Gfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~-~L~~~~~v~N~~~~~~~~~~ 169 (284)
-+.-+.+|++.. . ...|+|+-..++. ..++++.+|+|.++. .++++.+++|.++.+.++.+
T Consensus 83 ~~ld~~p~~~~~-~----------~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~ 144 (274)
T PF14315_consen 83 PVLDNGPYEVEI-D----------DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAP 144 (274)
T ss_pred ccccCCceeEEE-c----------CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeee
Confidence 233356676665 2 3455554433222 357899999998633 59999999999999876543
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=93.63 E-value=1.4 Score=41.35 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=67.1
Q ss_pred eEEEEECCCccEEEEeCCCeEEEEEEeCCC--------eEEEEeCCCcccCCCCCccCccceeCCC-CCCCCCCCC-ce-
Q 023283 24 EQVVLRNPRGASAKISLHGGQALSWRTERG--------EELLFTSTKAIFKPPHAVRGGIPICFPQ-FGNRGSLEQ-HG- 92 (284)
Q Consensus 24 ~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g--------~e~L~~~~~~~~~~~~~irgG~pvlfP~-~g~~~~~~~-HG- 92 (284)
..++|+++. ++++|+..||.|.++..++- ..+....+.. ...|+. .|.+..... -.
T Consensus 74 ~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~~ 140 (366)
T TIGR03593 74 KRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLAL 140 (366)
T ss_pred CeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCcccC
Confidence 468999997 99999999999999976311 2221212111 011111 121111000 00
Q ss_pred eeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCC-CcEEEEEEEEeCCCCeEE
Q 023283 93 FARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAAD-GNLALISRIRNINCKPFS 166 (284)
Q Consensus 93 far~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~-~~L~~~~~v~N~~~~~~~ 166 (284)
...+..|+.....-.+ .++...|+|++... ....++.+|+|..+ -.+.++++|+|.++.+..
T Consensus 141 ~~~~~~~~~~~~~~~l----~~~~~~v~l~~~~~--------~G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~ 203 (366)
T TIGR03593 141 PGHRTVWQAEGGEYTL----TPGQLPVTLTWDNS--------NGVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVS 203 (366)
T ss_pred CCCCceEEeCCCceee----CCCCEEEEEEEECC--------CCeEEEEEEEEeCCeEEEEeEEEEEeCCCCCee
Confidence 1234578876432000 11234677766542 23689999999863 368889999999987654
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=92.99 E-value=1.2 Score=39.55 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=57.0
Q ss_pred EEEECCCccEEEEeCCCeEEEEEEeC--------CCeEEEEeCCCcccCCCCCccCccceeCCCCCCCCCCCCceeeccC
Q 023283 26 VVLRNPRGASAKISLHGGQALSWRTE--------RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNR 97 (284)
Q Consensus 26 ~~L~~~~g~~~~V~~~GA~l~s~~~~--------~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~~~~~HGfar~~ 97 (284)
++|+|+. .+++++..||.|.++..+ ++.++-...+... ........+.++..|+. ..- .+.
T Consensus 2 v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~----~~~~~~~~l~~~~~~~~----~~~--~~~ 70 (270)
T PF14849_consen 2 VTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDE----ENYPLAFGLVFNTGGAQ----LPT--NDL 70 (270)
T ss_dssp EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETT----EEEEEEEEEESTT--TT----SGG--S--
T ss_pred EEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCC----cceEEEEcccccCcccc----CCC--ccc
Confidence 6899997 999999999999999752 1112221111100 00001222223222221 111 456
Q ss_pred CeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcC-CCcEEEEEEEEeCCCCeEEE
Q 023283 98 SWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAA-DGNLALISRIRNINCKPFSF 167 (284)
Q Consensus 98 ~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~-~~~L~~~~~v~N~~~~~~~~ 167 (284)
.|++...+... .+..+..+++|+....+ .+.++.+|+|.+ +-.+.++++++|.++.+...
T Consensus 71 ~f~~~~~~~~l--~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~ 131 (270)
T PF14849_consen 71 YFSVSQKSYTL--KEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSL 131 (270)
T ss_dssp B-B-S-SEEE----TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEE
T ss_pred eEEEcCCceee--ccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCcccc
Confidence 67776531000 00112567888776532 268999999984 35678888889988776655
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=90.85 E-value=7.7 Score=38.36 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=65.9
Q ss_pred EEEEECCCccEEEEeCCCeEEEEEEeCC-----C--eEEEEeCCCcccCCCCCccCccceeCCCCCCCCC--CCCceeec
Q 023283 25 QVVLRNPRGASAKISLHGGQALSWRTER-----G--EELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGS--LEQHGFAR 95 (284)
Q Consensus 25 ~~~L~~~~g~~~~V~~~GA~l~s~~~~~-----g--~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~~--~~~HGfar 95 (284)
.++++|+. .+++|+..||.|.++..++ + .++...++... ..-+.-+-+.|..+. ...++
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--------~~y~~~~g~~~~~~~~~~~~~~--- 107 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--------HPYFAQSGLTGADGPDNVPNPD--- 107 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--------cceeeeeccccCCCcccccCCC---
Confidence 78899997 9999999999999998631 1 12211121100 001111112211110 01111
Q ss_pred cCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCC-CcEEEEEEEEeCCCCeEEE
Q 023283 96 NRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAAD-GNLALISRIRNINCKPFSF 167 (284)
Q Consensus 96 ~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~-~~L~~~~~v~N~~~~~~~~ 167 (284)
+..|+........ .+.++...|+|++... ....++.+|+|.++ -.+.++++|+|.+..++..
T Consensus 108 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 108 RTLYTADGDSLVL--ADGQNELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred Ccceeecccceee--ccCCCceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcCCCCceee
Confidence 3567765321100 0111255677776542 23678899999753 4588899999988775544
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=79.50 E-value=34 Score=30.84 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=62.2
Q ss_pred cCCCceEEEEECCCccEEEEeC-CCeEEEEEEeC-CCeE---EEEeCCCcccCCC-----CCccCccc------------
Q 023283 19 DRNGIEQVVLRNPRGASAKISL-HGGQALSWRTE-RGEE---LLFTSTKAIFKPP-----HAVRGGIP------------ 76 (284)
Q Consensus 19 ~~~g~~~~~L~~~~g~~~~V~~-~GA~l~s~~~~-~g~e---~L~~~~~~~~~~~-----~~irgG~p------------ 76 (284)
..+|.+.+.++++. +.+.|.. +||+|..|... ...+ .|-....+|.... ..--.|+.
T Consensus 3 d~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~ 81 (278)
T PF09095_consen 3 DFDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEE 81 (278)
T ss_dssp SSSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HH
T ss_pred CCCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCcc
Confidence 36789999999997 8999985 59999999863 2333 3433333333211 00011111
Q ss_pred ----eeCCCCCCCC----------------CCCCc--eeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCC
Q 023283 77 ----ICFPQFGNRG----------------SLEQH--GFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWP 134 (284)
Q Consensus 77 ----vlfP~~g~~~----------------~~~~H--Gfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P 134 (284)
+.+=|.-|.. ....+ |---+++|++.... . .++|.-... ..+
T Consensus 82 ~~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~----------~-~v~f~r~G~-----~~~ 145 (278)
T PF09095_consen 82 LKEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR----------D-EVTFERDGG-----VEG 145 (278)
T ss_dssp HHTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES----------S-EEEEEEEEE-----ESE
T ss_pred ccccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC----------C-ceEEEEecc-----ccc
Confidence 0111111100 00111 11124778876653 1 255544321 166
Q ss_pred cceEEEEEEEEcCCCcEEEEEEEEeCCCCeE
Q 023283 135 HSFEFRLRVSLAADGNLALISRIRNINCKPF 165 (284)
Q Consensus 135 ~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~ 165 (284)
+.+.++-+|+|.+ ++|.++|+++ .++.+.
T Consensus 146 ~~~~l~K~y~l~~-~~l~V~Y~l~-~~~~~~ 174 (278)
T PF09095_consen 146 HPITLEKRYRLTK-NGLQVDYRLT-ESPEPI 174 (278)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEE--ESS--
T ss_pred CceEEEEEEEEcC-CEEEEEEEEE-ECCCCc
Confidence 7889999999998 8999999999 554443
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.09 E-value=4 Score=30.88 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 142 RVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 142 ~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
.++|.. ...+.+++|.|+||+|+ +.|-|-.|.
T Consensus 12 ~IelN~-gr~~~~i~V~NtGDRPI--QVGSHfHF~ 43 (106)
T COG0832 12 DIELNA-GRPTVTIEVANTGDRPI--QVGSHFHFF 43 (106)
T ss_pred cEEEeC-CCcceEEEEeecCCCce--Eeecceeeh
Confidence 345554 55777888999999966 555555553
No 27
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=73.42 E-value=5.4 Score=30.21 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|.
T Consensus 12 I~lN~-gr~~~~l~V~N~GDRPI--QVGSH~HF~ 42 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNTGDRPI--QVGSHYHFF 42 (100)
T ss_dssp EETTT-TSEEEEEEEEE-SSS-E--EEETTS-GG
T ss_pred EEecC-CCcEEEEEEEeCCCcce--EEccccCHH
Confidence 45555 56788999999999955 566666664
No 28
>PRK13203 ureB urease subunit beta; Reviewed
Probab=71.98 E-value=6.1 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 13 I~ln~-gr~~~~l~V~NtGDRPI--QVGSH~HF~ 43 (102)
T PRK13203 13 IELNA-GRETVTLTVANTGDRPI--QVGSHYHFF 43 (102)
T ss_pred EEeCC-CCCEEEEEEEeCCCCce--EEccccchh
Confidence 34554 45578899999999965 556665553
No 29
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=71.79 E-value=6.1 Score=30.01 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=21.6
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 13 I~lN~-gr~~~~l~V~NtGDRpI--QVGSH~HF~ 43 (101)
T cd00407 13 IELNA-GREAVTLKVKNTGDRPI--QVGSHYHFF 43 (101)
T ss_pred eEeCC-CCCEEEEEEEeCCCcce--EEccccchh
Confidence 45554 45578899999999955 566666663
No 30
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=71.77 E-value=6.4 Score=29.87 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=21.7
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 13 I~ln~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 43 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNTGDRPI--QVGSHFHFF 43 (101)
T ss_pred EEeCC-CCcEEEEEEEeCCCcce--EEccccchh
Confidence 45555 45678899999999955 566666563
No 31
>PRK13202 ureB urease subunit beta; Reviewed
Probab=66.64 E-value=9.7 Score=29.06 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEcCCCc-EEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGN-LALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~-L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +. =+++++|+|+||.|+ +.|-|-.|.
T Consensus 13 I~ln~-grr~~~~l~V~NtGDRPI--QVGSHyHF~ 44 (104)
T PRK13202 13 IEMNA-AALSRLQMRIINAGDRPV--QVGSHVHLP 44 (104)
T ss_pred EEeCC-CCCceEEEEEEeCCCCce--EEccccchh
Confidence 45554 32 467889999999965 556666563
No 32
>PRK13201 ureB urease subunit beta; Reviewed
Probab=65.76 E-value=9.2 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=21.4
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 13 I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 43 (136)
T PRK13201 13 VEINN-HHPETVIEVENTGDRPI--QVGSHFHFY 43 (136)
T ss_pred eEeCC-CCCEEEEEEEeCCCcce--Eeccccchh
Confidence 45554 45678899999999965 556665553
No 33
>PRK13205 ureB urease subunit beta; Reviewed
Probab=63.65 E-value=10 Score=30.90 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=21.6
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. ..=+++++|+|+||.|+ +.|-|-.|.
T Consensus 13 IelN~-GR~~i~L~V~NtGDRPI--QVGSHyHF~ 43 (162)
T PRK13205 13 LTGNV-GREAKTIEIINTGDRPV--QIGSHFHFA 43 (162)
T ss_pred eEeCC-CCcEEEEEEEeCCCCce--Eeccccchh
Confidence 45554 45678899999999965 556665553
No 34
>PRK13198 ureB urease subunit beta; Reviewed
Probab=63.18 E-value=11 Score=30.84 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=27.1
Q ss_pred ccCCcceEE-EEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 131 KIWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 131 ~~~P~~f~~-~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
..-|+.+.+ .=.+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 28 ~~~pGei~~~~g~I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 71 (158)
T PRK13198 28 NTPLGGLVLAETPITFNE-NKPVTKVKVRNTGDRPI--QVGSHFHFF 71 (158)
T ss_pred cCCCceEEeCCCCeEeCC-CCcEEEEEEEeCCCCce--Eeccccchh
Confidence 445555432 22356665 45678899999999965 555665553
No 35
>PRK13204 ureB urease subunit beta; Reviewed
Probab=63.04 E-value=11 Score=30.85 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=26.7
Q ss_pred ccCCcceEE-EEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 131 KIWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 131 ~~~P~~f~~-~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
...|+.+.+ .=.+.|.. +.=.++++|+|+||+|+ +.|-|-.|-
T Consensus 23 ~~~pGei~~~~~~I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 66 (159)
T PRK13204 23 HRPVGGYVLAKDPIEINQ-GRPRTTLTVRNTGDRPI--QIGSHFHFF 66 (159)
T ss_pred cCCCCeEEeCCCCeEeCC-CCcEEEEEEEeCCCCce--Eeccccchh
Confidence 345554432 12355665 45678899999999965 556665553
No 36
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=62.37 E-value=22 Score=26.01 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcce
Q 023283 133 WPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYF 175 (284)
Q Consensus 133 ~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF 175 (284)
-|+.++++..|.-.. . .+.+++.|.|..+..|.+--+.|-
T Consensus 5 l~~~~~v~~~~~~~~-g--~l~l~l~N~g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 5 LPYAPEVTARYDPAT-G--NLRLTLSNPGSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCCEEEEEEECCC-C--EEEEEEEeCCCCcEEEEEEeCCcC
Confidence 356677777765543 3 555566899999999998887773
No 37
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=51.37 E-value=19 Score=30.87 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=26.8
Q ss_pred cCCcceEE-EEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 132 IWPHSFEF-RLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 132 ~~P~~f~~-~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
.+|+.+.. .=.+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 110 l~PGei~~~~~~I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 152 (208)
T PRK13192 110 LYPGEILPGDGEIELNA-GRPAVTLDVTNTGDRPI--QVGSHFHFF 152 (208)
T ss_pred cCCCEEEcCCCCeeeCC-CCCEEEEEEEeCCCCce--eeccccchh
Confidence 45665433 12355655 45678899999999965 556665553
No 38
>PRK13986 urease subunit alpha; Provisional
Probab=47.01 E-value=23 Score=30.74 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=21.9
Q ss_pred EEEcCCCcEEEEEEEEeCCCCeEEEeeccCccee
Q 023283 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFA 176 (284)
Q Consensus 143 ~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~ 176 (284)
+.|.. +.=+++++|+|+||+|+ +.|-|-.|-
T Consensus 118 I~lN~-gr~~~~l~V~NtGDRPI--QVGSHyHF~ 148 (225)
T PRK13986 118 ITINA-GKKAVSVKVKNVGDRPV--QVGSHFHFF 148 (225)
T ss_pred eecCC-CCcEEEEEEEeCCCCce--eeccccchh
Confidence 45655 45678899999999965 556666563
No 39
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=46.91 E-value=29 Score=25.24 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=13.7
Q ss_pred cEEEEEEEEeCCCCeEEEe
Q 023283 150 NLALISRIRNINCKPFSFS 168 (284)
Q Consensus 150 ~L~~~~~v~N~~~~~~~~~ 168 (284)
++.+.++|+|.++++..+.
T Consensus 1 ~v~~~l~v~N~s~~~v~l~ 19 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQ 19 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEE
T ss_pred CEEEEEEEEeCCCCeEEEE
Confidence 3788899999999988765
No 40
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=46.08 E-value=94 Score=27.90 Aligned_cols=153 Identities=19% Similarity=0.223 Sum_probs=67.9
Q ss_pred EEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCC-CcccCCCCC-ccCccceeCCCC-CCCCCCCCceee-ccCCeEEe
Q 023283 27 VLRNPRGASAKISLHGGQALSWRTERGEELLFTST-KAIFKPPHA-VRGGIPICFPQF-GNRGSLEQHGFA-RNRSWVID 102 (284)
Q Consensus 27 ~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~-~~~~~~~~~-irgG~pvlfP~~-g~~~~~~~HGfa-r~~~W~v~ 102 (284)
+|+..+ .++++...-|.|.||+. +|+++|-... ...|..... -+++. .+.. .+-.....+=.. +...+++.
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~---~~~~~~~W~~ag~~~~~~~~~~~~~~ 75 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIG---NPSRAARWKDAGLDRLVTRVRSVKVE 75 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTT---TSHSCHHHHHTTTTCEEEEEEEEEEE
T ss_pred CCccCC-EEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccc---cchhHHHHHHcCccceeeEEeEEEEE
Confidence 356664 88888877779999997 5788875322 233332100 01111 0100 000000111111 11223343
Q ss_pred ccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeeccCcceecC-Ccc
Q 023283 103 DNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAIS-DIS 181 (284)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~~~-~~~ 181 (284)
... ++..+++....... .=+..|.+.++|++..+..|.++++++-.+.-|..--+|+. |.++ +..
T Consensus 76 ~~~---------~~~~v~v~~~~~~~---~~~~~~~~~~~y~i~~dG~i~v~~~~~~~~~~p~lpRiGl~--~~Lp~~~~ 141 (276)
T PF02929_consen 76 ESD---------GDVAVTVTARYAAP---NKSWNFEVTITYTIYADGTIKVDMTFEPSGDLPELPRIGLQ--FQLPKSFD 141 (276)
T ss_dssp EEE---------SESEEEEEEEEEET---TCCEEEEEEEEEEEETTSEEEEEEEEEEETTSSC-SEEEEE--EEEETTEE
T ss_pred ecC---------CCceEEEEEEEeCC---CcceEEEEEEEEEEcCCCEEEEEEEEEeCCCCCCccceEEE--EEecCcce
Confidence 322 12223333222111 11223889999999887788888887655543333233333 2333 233
Q ss_pred eEEEecC-CCCccccccc
Q 023283 182 EVRIEGL-ETLDYLDNLC 198 (284)
Q Consensus 182 ~~~v~gl-~~~~~~d~~~ 198 (284)
+++--|. |...|.|...
T Consensus 142 ~v~wyGrGP~EnY~DRk~ 159 (276)
T PF02929_consen 142 NVEWYGRGPHENYPDRKT 159 (276)
T ss_dssp EEEEEEEESS--BTTB-S
T ss_pred eEEEECCCCCCCCccccc
Confidence 4444343 3456777643
No 41
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=42.27 E-value=32 Score=32.31 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=22.1
Q ss_pred EEEEEEcCCCcEEEEEEEEeCCCCeEEEe
Q 023283 140 RLRVSLAADGNLALISRIRNINCKPFSFS 168 (284)
Q Consensus 140 ~~~~~L~~~~~L~~~~~v~N~~~~~~~~~ 168 (284)
..+|.+-+ .+|+++++|+|+|++|.-.+
T Consensus 255 ~A~Y~vpg-R~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 255 DATYRVPG-RTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEESSS-SEEEEEEEEEEESSS-BEEE
T ss_pred ccEEecCC-cEEEEEEEEEcCCCCceEee
Confidence 45777776 89999999999999987543
No 42
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=40.49 E-value=1.1e+02 Score=21.43 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred eeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEe--cCCCCEEEEcCCCC
Q 023283 209 ALTFESEIDRVYLSSSDKIAILDHERKRTFVIHK--EGLPDWCGIHGRGN 256 (284)
Q Consensus 209 ~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~--~~~~~~vvw~p~~~ 256 (284)
.+.+.+.+.||+.+.+..+.+.-. +++.|.|.. .|...+.||...+.
T Consensus 14 ~l~~~~~~~rV~v~dp~Iadv~~~-~~~~v~i~gk~~G~T~l~vw~~~~~ 62 (72)
T PF13629_consen 14 ILRLPGPITRVAVGDPEIADVTVL-SPNEVYITGKKPGTTTLIVWDKDGR 62 (72)
T ss_pred EEEcCCCcEEEEECCCCEEEEEEe-CCCEEEEEEeCceeEEEEEECCCCC
Confidence 355667899999998876555432 456776763 57899999975544
No 43
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=39.54 E-value=39 Score=31.77 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEEcCCCcEEEEEEEEeCCCCeEEE
Q 023283 141 LRVSLAADGNLALISRIRNINCKPFSF 167 (284)
Q Consensus 141 ~~~~L~~~~~L~~~~~v~N~~~~~~~~ 167 (284)
.+|.+-+ .+|+++++|+|.|+++.-+
T Consensus 275 a~Y~VPG-R~l~~~~~VTN~g~~~vrl 300 (399)
T TIGR03079 275 ANYDVPG-RALRVTMEITNNGDQVISI 300 (399)
T ss_pred cEEecCC-cEEEEEEEEEcCCCCceEE
Confidence 4677765 7899999999999998744
No 44
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=37.52 E-value=1.2e+02 Score=23.14 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=18.3
Q ss_pred ceEEEEEEEEcCCCcEEE-EEEEEeCCCCeEEEee
Q 023283 136 SFEFRLRVSLAADGNLAL-ISRIRNINCKPFSFSI 169 (284)
Q Consensus 136 ~f~~~~~~~L~~~~~L~~-~~~v~N~~~~~~~~~~ 169 (284)
.++.++++.+..++.+.+ .++++|+++++.-..+
T Consensus 49 gi~~~~~v~V~~~~~vEi~~l~l~N~~~~~r~L~v 83 (110)
T PF06165_consen 49 GIETELTVFVPPDDPVEIRRLRLTNTSNRPRRLSV 83 (110)
T ss_dssp TEEEEEEEE--TTSSEEEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEEcCCCCEEEEEEEEEECcCCcEEEEE
Confidence 345556666654444555 5788999988664443
No 45
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=28.56 E-value=1.5e+02 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=27.4
Q ss_pred EcCCCcEEEEEEEEeCCCCeEEEeeccCcceec
Q 023283 145 LAADGNLALISRIRNINCKPFSFSIAYHTYFAI 177 (284)
Q Consensus 145 L~~~~~L~~~~~v~N~~~~~~~~~~g~HpYF~~ 177 (284)
+..+..-++.+.|+|.+++++-|....++.+.-
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn 55 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVSANTATTN 55 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEec
Confidence 344466888999999999999999999988764
No 46
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=27.35 E-value=1.4e+02 Score=21.74 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred CcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEee
Q 023283 134 PHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSI 169 (284)
Q Consensus 134 P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~ 169 (284)
|+-.++.+=+.|..++.+.+.++|.|..++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 444555555556545678888888888777766554
No 47
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=34 Score=23.48 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.2
Q ss_pred CCccCccceeCCC
Q 023283 69 HAVRGGIPICFPQ 81 (284)
Q Consensus 69 ~~irgG~pvlfP~ 81 (284)
-||+.|||++.|-
T Consensus 36 YpI~dGIPvlL~~ 48 (60)
T COG2835 36 YPIRDGIPVLLPD 48 (60)
T ss_pred eecccCccccCch
Confidence 4889999999985
No 48
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=21.87 E-value=1.4e+02 Score=21.55 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=23.9
Q ss_pred CcEEEEEEEEeCCCCeEEE-eeccCcceecCCcc
Q 023283 149 GNLALISRIRNINCKPFSF-SIAYHTYFAISDIS 181 (284)
Q Consensus 149 ~~L~~~~~v~N~~~~~~~~-~~g~HpYF~~~~~~ 181 (284)
+.+.+.+.|+|++..+... .+.++=||..++..
T Consensus 13 n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~~~ 46 (86)
T PF00942_consen 13 NSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDEVS 46 (86)
T ss_dssp SEEEEEEEEEETSSS-EEGGGEEEEEEEE-SSCC
T ss_pred CEEEEEEEEEECCCCCEEcCCEEEEEEEecCCCc
Confidence 6788889999988877765 67788888887643
No 49
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=21.84 E-value=1e+03 Score=25.75 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCC-CcccCCCCCccCccceeCCCCC-CCCCCCCcee-eccCCeEE
Q 023283 25 QVVLRNPRGASAKISLHGGQALSWRTERGEELLFTST-KAIFKPPHAVRGGIPICFPQFG-NRGSLEQHGF-ARNRSWVI 101 (284)
Q Consensus 25 ~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~-~~~~~~~~~irgG~pvlfP~~g-~~~~~~~HGf-ar~~~W~v 101 (284)
.+.|+.++ .++++...=|.|.||+. +|+++|.... ...|......- . +... .-.....|-. .+...+++
T Consensus 725 ~~~i~~~~-~~~~fdk~tG~l~s~~~-~g~~ll~~~~~~nfwRAptDND--~----~~~~~~W~~ag~~~l~~~~~~~~~ 796 (1021)
T PRK10340 725 SCTVRGYN-FAITFSKVSGKLTSWQV-NGESLLTREPKINFFKPMIDNH--K----QEYEGLWQPNHLQIMQEHLRDFAV 796 (1021)
T ss_pred EEEEEeCC-EEEEEECCcceEEEEEe-CCeeeecCCCccceEeCCccCC--c----chhhHHHHHcCCccceeEEEEEEE
Confidence 35566664 78888876679999988 5888876442 33443211110 0 0000 0000011100 11123444
Q ss_pred eccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCC
Q 023283 102 DDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINC 162 (284)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~ 162 (284)
...+ +...|+..+..... ... +.|.++++|++..+..|.+++++.-.++
T Consensus 797 ~~~~---------~~v~v~~~~~~~~~-~~~--~~~~~~~~y~i~~~G~i~v~~~~~~~~~ 845 (1021)
T PRK10340 797 EQSD---------GEVLIISRTVIAPP-VFD--FGMRCTYIYRIAADGQVNVALSGERYGD 845 (1021)
T ss_pred EeCC---------CeEEEEEEEEecCC-ccc--ceeEEEEEEEEcCCCEEEEEEEEEECCC
Confidence 4321 13444444332111 111 2367899999987678988888764443
No 50
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=21.84 E-value=3.7e+02 Score=22.87 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=32.7
Q ss_pred eEEEEEecCCchhhccCCcceEEE-EEEEEcCCCcEEEEEEEEeCCCCeEEEeec
Q 023283 117 VYVDLLLKPSEEDLKIWPHSFEFR-LRVSLAADGNLALISRIRNINCKPFSFSIA 170 (284)
Q Consensus 117 ~~v~l~l~~~~~~~~~~P~~f~~~-~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g 170 (284)
-.++.++..+ ...+-|+.|+-+ -.+.+..+..-.+.|.++|.+++++.-...
T Consensus 63 R~I~V~F~a~--~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~ 115 (188)
T PRK05089 63 RTITVEFDAN--VNGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAI 115 (188)
T ss_pred cEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 3566666543 245678888643 233344333467789999999998865543
Done!