BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023284
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGPNPVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 69 RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++++L DL +E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQRYFV++
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGPNPVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 69 RAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++++L DL +E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQRYFV++
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 247 TTGYNDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 15 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 75 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 25 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 84
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 85 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 142
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 143 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 202
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 203 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 242
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 230 bits (586), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 15 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 75 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 230 bits (586), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 16 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 75
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 76 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 133
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 134 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 193
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 194 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 233
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 230 bits (586), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 16 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 75
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 76 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 133
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 134 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 193
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 194 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 233
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 229 bits (585), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 69 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 229 bits (585), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 72 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 131
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 132 ANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 189
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 190 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 249
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 250 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 289
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 15 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 74
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 75 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 132
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 133 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 192
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 193 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 69 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 128
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 129 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 186
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 246
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 247 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 21 RPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNP 80
R EW+D+ P+PQ+DGP+PVV I Y +F + YFRAV DERS R+F+LT++AI LN
Sbjct: 71 RAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA 130
Query: 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140
NYTVWHFRR ++ +L DLQ+E+ ++ I + KNYQ+WHHRR + E L + +EL
Sbjct: 131 ANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPS--QEL 188
Query: 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200
+F +L+ DAKNYHAW +RQWV+Q W++EL Y LL ED+ NNS WNQR+FV++
Sbjct: 189 EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISN 248
Query: 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241
+ A+ + EV +T+E I P NES W YL+G+ +D
Sbjct: 249 TTGYSDR-AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 288
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 12/235 (5%)
Query: 16 LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEA 75
+P+SQR W+DV PI QDDGPNPVVPI Y E+ + M YFRA+ +E+S R+ +LT+
Sbjct: 21 IPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEII 80
Query: 76 ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135
+ +NP +YTVW +R ++ +L+ L+DEL + A N K+YQ+WHHR + +++
Sbjct: 81 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140
Query: 136 VNKELQFTKKMLSLDAKNYHAWSYRQWV---LQALG-----GWEDELDYCQMLLGEDIFN 187
E+++ L D KNYH W+Y W+ LG W ELD+C +L D N
Sbjct: 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN 200
Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRD--SEVNFTIEAILGNPENESPWRYLRGLYK 240
NSAW R+++ P G + R E+ + +++I P N S W YLRG K
Sbjct: 201 NSAWGWRWYLRVSRP--GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 12/235 (5%)
Query: 16 LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEA 75
+P+SQR W+DV PI QDDGPNPVVPI Y E+ + M YFRA+ +E+S R+ +LT+
Sbjct: 20 IPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEII 79
Query: 76 ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135
+ +NP +YTVW +R ++ +L+ L+DEL + A N K+YQ+WHHR + +++
Sbjct: 80 VRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 139
Query: 136 VNKELQFTKKMLSLDAKNYHAWSYRQWV---LQALG-----GWEDELDYCQMLLGEDIFN 187
E+++ L D KNYH W+Y W+ LG W ELD+C +L D N
Sbjct: 140 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN 199
Query: 188 NSAWNQRYFVVTRSPLLGGLIAMRD--SEVNFTIEAILGNPENESPWRYLRGLYK 240
NSAW R+++ P G + R E+ + +++I P N S W YLRG K
Sbjct: 200 NSAWGWRWYLRVSRP--GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 252
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 23 EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN 82
++SD+TP+ + + I Y ++ + M A+ ++E S R+ +T+ I +
Sbjct: 7 DYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASH 66
Query: 83 YTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN---- 137
YT+W +R I++ L + +L DEL + IA N KNYQ+W++R+ + ++ N
Sbjct: 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126
Query: 138 -KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED--ELDYCQMLLGEDIFNNSAWNQR 194
+E + MLS D KN+H WSYR+W++ D EL + ++ D+ NNSAW+ R
Sbjct: 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR 186
Query: 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240
+F++ L + D E+N+ + I+ P+N S W YL G+++
Sbjct: 187 FFLLFSKKHLATDNTI-DEELNYVKDKIVKCPQNPSTWNYLLGIHE 231
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
P ++S W Y R L R LSV +S Q +L C E
Sbjct: 223 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 262
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG 169
+ +L + KEL+ + D + AW Y +W+L A G
Sbjct: 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSG 241
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 50 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 109
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 170 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
P ++S W Y R L R LSV +S Q +L C E
Sbjct: 224 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 263
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 186
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG 169
+ +L + KEL+ + D + AW Y +W+L A G
Sbjct: 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSG 242
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 53 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 112
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 113 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 172
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 173 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 226
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
P ++S W Y R L R LSV +S Q +L C E
Sbjct: 227 PNDQSAWFYHRWLLG------AGSGRCELSVEKSTVLQSELESCKE 266
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 130 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 189
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG 169
+ +L + KEL+ + D + AW Y +W+L A G
Sbjct: 190 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSG 245
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 35/226 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 51 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 110
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 111 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 170
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 171 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 224
Query: 226 PENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271
P ++S W Y R L + R LSV +S Q +L C E
Sbjct: 225 PNDQSAWFYHRWLLGAGS------GRCELSVEKSTVLQSELESCKE 264
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 128 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 187
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG 169
+ +L + KEL+ + D + AW Y +W+L A G
Sbjct: 188 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSG 243
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGL 238
P ++S W Y R L
Sbjct: 223 PNDQSAWFYHRWL 235
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164
+ +L + KEL+ + D + AW Y +W+L
Sbjct: 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKNYQ 119
+LT + + NP T+W+ RR++++ L T+ ++ EL F+ + N K+Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-VLQALGGWEDELDYCQ 178
WHHR W+ +L +EL+ + L D +N+H W YR++ QA +EL +
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168
Query: 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS-------------EVNFTIEAILGN 225
L+ + N S+W+ RS LL L DS E+ A +
Sbjct: 169 SLITRNFSNYSSWH------YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222
Query: 226 PENESPWRYLRGL 238
P ++S W Y R L
Sbjct: 223 PNDQSAWFYHRWL 235
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125
+R +L + + N+ W +RR + +ELAF + N NY WH+R
Sbjct: 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 185
Query: 126 WVAE------------KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164
+ +L + KEL+ + D + AW Y +W+L
Sbjct: 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 39 VVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHF 88
V+ IA+K EF +F + Y DE R +K A L PG + F
Sbjct: 97 VLEIAFKNEFDAVTMFFSTIMYFDEEDLRKL-FSKVAEALKPGGVFITDF 145
>pdb|3FIE|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FII|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 427
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR 233
L+ + G DIF NS++ R + + GG+ + +I + +PE E +
Sbjct: 151 LNLLVLGAGPDIFENSSYPVRKLMDS-----GGVYDPSNDGFG-SINIVTFSPEYEYTFN 204
Query: 234 YLRGLYKDDTESWINDPRMLLS 255
+ G Y TES+I DP + L+
Sbjct: 205 DISGGYNSSTESFIADPAISLA 226
>pdb|2FTR|A Chain A, Crystal Structure Of An Ethyl Tert-Butyl Ether D (Ethd)
Family Protein (Bh0200) From Bacillus Halodurans C-125
At 1.40 A Resolution
pdb|2FTR|B Chain B, Crystal Structure Of An Ethyl Tert-Butyl Ether D (Ethd)
Family Protein (Bh0200) From Bacillus Halodurans C-125
At 1.40 A Resolution
Length = 108
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESW 246
+ A+++ YF T +PL + +RD +V I+G+P ES + Y DD ES
Sbjct: 20 DKQAFDEHYFN-THAPLTRKIPGLRDXKVT----RIVGSPXGESKFYLXCEXYYDDHESL 74
>pdb|4IUJ|A Chain A, Structure Of Polymerase Acid Protein (pa) From
Influenzavirus A Influenza A Virus A, Wilson-smith/1933
(h1n1)
Length = 464
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY-L 235
C+ LL + +FN+ + SP L G A ++ ++A+ N E P + L
Sbjct: 385 CRTLLAKSVFNS---------LYASPQLEGFSA-ESRKLLLIVQALRDNLE---PGTFDL 431
Query: 236 RGLYKDDTESWINDPRMLLSV--FESF 260
GLY+ E INDP +LL+ F SF
Sbjct: 432 GGLYEAIEECLINDPWVLLNASWFNSF 458
>pdb|2ZNL|A Chain A, Crystal Structure Of Pa-Pb1 Complex Form Influenza Virus
Rna Polymerase
Length = 478
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY-L 235
C+ LL + +FN+ + SP L G A ++ ++A+ N E P + L
Sbjct: 399 CRTLLAKSVFNS---------LYASPQLEGFSA-ESRKLLLIVQALRDNLE---PGTFDL 445
Query: 236 RGLYKDDTESWINDPRMLLSV--FESF 260
GLY+ E INDP +LL+ F SF
Sbjct: 446 GGLYEAIEECLINDPWVLLNASWFNSF 472
>pdb|3CM8|A Chain A, A Rna Polymerase Subunit Structure From Virus
Length = 471
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY-L 235
C+ LL + +FN+ + SP L G A ++ ++A+ N E P + L
Sbjct: 392 CRTLLAKSVFNS---------LYASPQLEGFSA-ESRKLLLIVQALRDNLE---PGTFDL 438
Query: 236 RGLYKDDTESWINDPRMLLSV--FESF 260
GLY+ E INDP +LL+ F SF
Sbjct: 439 GGLYEAIEECLINDPWVLLNASWFNSF 465
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,504,714
Number of Sequences: 62578
Number of extensions: 400028
Number of successful extensions: 964
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 50
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)