Query 023284
Match_columns 284
No_of_seqs 238 out of 1401
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0530 Protein farnesyltransf 100.0 8.1E-61 1.7E-65 415.3 21.8 241 16-260 10-251 (318)
2 PLN02789 farnesyltranstransfer 100.0 5.6E-58 1.2E-62 421.5 28.0 249 13-261 1-249 (320)
3 COG5536 BET4 Protein prenyltra 100.0 1.9E-35 4.2E-40 258.6 12.8 217 24-241 6-239 (328)
4 PLN02789 farnesyltranstransfer 100.0 6.3E-33 1.4E-37 255.4 20.3 198 40-242 62-268 (320)
5 KOG0529 Protein geranylgeranyl 100.0 1E-31 2.2E-36 246.8 19.9 192 50-241 30-241 (421)
6 KOG0530 Protein farnesyltransf 100.0 4.1E-28 8.9E-33 211.4 13.3 158 40-200 68-233 (318)
7 KOG0529 Protein geranylgeranyl 99.9 2.1E-25 4.5E-30 205.3 13.8 160 41-200 55-241 (421)
8 COG5536 BET4 Protein prenyltra 99.8 7.9E-21 1.7E-25 167.0 10.0 161 40-200 57-239 (328)
9 KOG4626 O-linked N-acetylgluco 99.8 5.6E-18 1.2E-22 162.3 18.5 191 40-240 311-501 (966)
10 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-17 3.3E-22 165.9 22.6 179 44-232 326-504 (615)
11 TIGR00990 3a0801s09 mitochondr 99.8 4.7E-17 1E-21 162.4 20.8 207 41-261 357-570 (615)
12 KOG4626 O-linked N-acetylgluco 99.8 1.4E-17 3E-22 159.7 15.3 225 23-261 220-484 (966)
13 PRK15359 type III secretion sy 99.7 7.9E-16 1.7E-20 126.2 14.6 127 69-201 13-139 (144)
14 KOG1126 DNA-binding cell divis 99.7 1.8E-16 3.8E-21 153.2 12.3 192 42-243 414-605 (638)
15 PRK12370 invasion protein regu 99.7 2.7E-15 5.9E-20 148.1 20.6 194 40-243 286-489 (553)
16 PRK11189 lipoprotein NlpI; Pro 99.7 3.7E-15 8E-20 136.2 19.7 207 44-262 58-265 (296)
17 PRK12370 invasion protein regu 99.7 1.3E-14 2.8E-19 143.3 22.7 169 66-243 278-455 (553)
18 PRK15174 Vi polysaccharide exp 99.6 3.7E-14 8.1E-19 142.7 23.6 191 42-242 103-331 (656)
19 PRK15359 type III secretion sy 99.6 7.2E-15 1.6E-19 120.5 13.6 125 105-241 14-138 (144)
20 KOG1126 DNA-binding cell divis 99.6 3.2E-15 6.8E-20 144.6 12.8 180 41-230 447-626 (638)
21 PRK15174 Vi polysaccharide exp 99.6 1.2E-13 2.6E-18 139.1 23.4 204 42-259 137-378 (656)
22 TIGR02521 type_IV_pilW type IV 99.6 5.4E-13 1.2E-17 113.7 22.9 183 49-241 31-215 (234)
23 PRK09782 bacteriophage N4 rece 99.6 2.4E-13 5.1E-18 141.5 22.3 170 52-232 545-714 (987)
24 TIGR02917 PEP_TPR_lipo putativ 99.6 5.7E-13 1.2E-17 134.8 23.7 157 42-202 662-818 (899)
25 KOG0547 Translocase of outer m 99.6 9.6E-14 2.1E-18 130.5 16.3 193 40-241 351-549 (606)
26 PRK11189 lipoprotein NlpI; Pro 99.6 6.3E-13 1.4E-17 121.5 20.7 152 64-226 41-196 (296)
27 TIGR02917 PEP_TPR_lipo putativ 99.6 1.1E-12 2.3E-17 132.8 24.1 186 45-240 121-306 (899)
28 PRK09782 bacteriophage N4 rece 99.5 1.2E-12 2.7E-17 136.2 22.5 186 61-262 521-706 (987)
29 PRK11788 tetratricopeptide rep 99.5 3.4E-12 7.4E-17 119.5 23.1 219 45-275 137-363 (389)
30 PRK11447 cellulose synthase su 99.5 1.3E-12 2.9E-17 139.0 22.6 182 42-233 296-533 (1157)
31 KOG1125 TPR repeat-containing 99.5 7.6E-13 1.7E-17 126.6 16.4 195 40-244 310-557 (579)
32 PRK11447 cellulose synthase su 99.5 5E-12 1.1E-16 134.7 23.6 197 56-260 276-522 (1157)
33 TIGR02521 type_IV_pilW type IV 99.5 1.1E-11 2.4E-16 105.5 20.0 174 42-225 58-233 (234)
34 KOG0547 Translocase of outer m 99.5 3.6E-12 7.8E-17 120.1 17.8 199 50-261 327-531 (606)
35 KOG1155 Anaphase-promoting com 99.4 1.2E-11 2.7E-16 115.8 20.4 150 99-261 345-494 (559)
36 KOG1155 Anaphase-promoting com 99.4 6.4E-12 1.4E-16 117.8 16.4 151 63-223 344-494 (559)
37 PRK10370 formate-dependent nit 99.4 1E-11 2.2E-16 107.3 15.9 124 65-189 55-179 (198)
38 PRK11788 tetratricopeptide rep 99.4 7.2E-11 1.6E-15 110.6 22.9 194 51-259 109-308 (389)
39 TIGR02552 LcrH_SycD type III s 99.4 1.5E-11 3.2E-16 98.5 15.1 125 70-197 4-128 (135)
40 PRK15179 Vi polysaccharide bio 99.4 5.3E-11 1.1E-15 119.9 22.0 155 67-231 70-224 (694)
41 PRK15179 Vi polysaccharide bio 99.4 3E-11 6.5E-16 121.7 18.7 144 48-194 85-228 (694)
42 TIGR03302 OM_YfiO outer membra 99.4 1.1E-10 2.3E-15 102.4 20.0 170 47-226 31-234 (235)
43 PRK10370 formate-dependent nit 99.3 4.5E-11 9.7E-16 103.2 16.0 124 99-231 54-180 (198)
44 PF13429 TPR_15: Tetratricopep 99.3 8.9E-12 1.9E-16 112.5 11.7 189 46-244 41-263 (280)
45 PF13429 TPR_15: Tetratricopep 99.3 4.2E-11 9E-16 108.1 14.0 145 58-205 119-265 (280)
46 TIGR02552 LcrH_SycD type III s 99.3 8.8E-11 1.9E-15 93.9 14.2 124 106-238 5-128 (135)
47 PRK10049 pgaA outer membrane p 99.3 1E-09 2.2E-14 112.5 24.3 142 57-202 23-164 (765)
48 PRK10049 pgaA outer membrane p 99.3 6.3E-10 1.4E-14 114.1 22.6 173 56-238 279-470 (765)
49 KOG0553 TPR repeat-containing 99.3 4.3E-11 9.4E-16 107.1 12.0 103 99-203 96-198 (304)
50 KOG1125 TPR repeat-containing 99.2 4.8E-10 1E-14 107.6 18.0 188 58-260 295-525 (579)
51 KOG1173 Anaphase-promoting com 99.2 5.3E-10 1.2E-14 107.1 17.9 223 43-275 340-570 (611)
52 PRK14574 hmsH outer membrane p 99.2 1.2E-09 2.7E-14 112.0 20.8 194 39-243 24-217 (822)
53 cd05804 StaR_like StaR_like; a 99.2 2.3E-09 4.9E-14 99.3 20.2 203 45-260 2-213 (355)
54 TIGR03302 OM_YfiO outer membra 99.2 2.5E-09 5.5E-14 93.7 18.6 163 78-254 28-224 (235)
55 KOG0550 Molecular chaperone (D 99.2 3.1E-10 6.7E-15 105.3 13.0 196 14-227 142-353 (486)
56 KOG0553 TPR repeat-containing 99.2 1.9E-10 4.2E-15 103.0 11.3 113 55-170 87-199 (304)
57 KOG2076 RNA polymerase III tra 99.2 4.8E-09 1E-13 105.0 20.6 139 43-185 134-272 (895)
58 COG3063 PilF Tfp pilus assembl 99.1 5.7E-09 1.2E-13 90.6 18.0 174 51-234 37-213 (250)
59 PLN03088 SGT1, suppressor of 99.1 1.2E-09 2.6E-14 102.5 14.8 97 99-197 17-113 (356)
60 KOG0624 dsRNA-activated protei 99.1 6.3E-09 1.4E-13 95.0 18.3 168 66-236 55-264 (504)
61 COG3063 PilF Tfp pilus assembl 99.1 6E-09 1.3E-13 90.4 16.2 125 99-232 50-176 (250)
62 KOG0548 Molecular co-chaperone 99.1 3.1E-09 6.6E-14 101.4 15.4 139 59-200 334-472 (539)
63 KOG3060 Uncharacterized conser 99.1 2.3E-08 4.9E-13 88.0 19.1 184 43-233 46-229 (289)
64 KOG0548 Molecular co-chaperone 99.1 5.4E-09 1.2E-13 99.8 16.1 156 58-231 307-462 (539)
65 PLN03088 SGT1, suppressor of 99.0 5.6E-09 1.2E-13 98.0 15.3 105 61-168 14-118 (356)
66 cd05804 StaR_like StaR_like; a 99.0 2.1E-08 4.5E-13 92.9 18.0 168 49-226 43-217 (355)
67 KOG2002 TPR-containing nuclear 99.0 7.1E-09 1.5E-13 104.5 14.8 200 42-250 523-771 (1018)
68 KOG2076 RNA polymerase III tra 99.0 1.9E-08 4.1E-13 100.8 16.7 125 92-226 148-272 (895)
69 KOG0624 dsRNA-activated protei 99.0 4.2E-08 9.1E-13 89.7 17.3 158 79-244 34-204 (504)
70 KOG4162 Predicted calmodulin-b 98.9 3.7E-08 8E-13 97.4 16.7 138 50-188 651-788 (799)
71 PF13414 TPR_11: TPR repeat; P 98.9 4.5E-09 9.8E-14 74.5 7.6 67 117-185 2-69 (69)
72 KOG4162 Predicted calmodulin-b 98.9 1E-07 2.3E-12 94.3 17.9 212 43-264 472-787 (799)
73 KOG1173 Anaphase-promoting com 98.9 8.5E-08 1.8E-12 92.2 16.6 174 61-244 324-504 (611)
74 PRK15363 pathogenicity island 98.9 6.3E-08 1.4E-12 80.0 13.1 107 75-184 26-133 (157)
75 PRK02603 photosystem I assembl 98.8 4E-08 8.7E-13 82.5 11.4 111 116-228 33-153 (172)
76 PF13414 TPR_11: TPR repeat; P 98.8 2.4E-08 5.2E-13 70.7 8.5 68 81-151 1-69 (69)
77 cd00189 TPR Tetratricopeptide 98.8 9.6E-08 2.1E-12 68.4 11.8 98 85-185 2-99 (100)
78 PRK02603 photosystem I assembl 98.8 1.2E-07 2.6E-12 79.6 13.9 105 81-188 33-154 (172)
79 KOG1127 TPR repeat-containing 98.8 2.4E-08 5.2E-13 100.9 11.0 172 41-222 484-657 (1238)
80 KOG3060 Uncharacterized conser 98.8 2.7E-07 5.9E-12 81.3 16.0 147 46-195 83-232 (289)
81 CHL00033 ycf3 photosystem I as 98.8 1.1E-07 2.5E-12 79.3 12.6 125 103-229 18-154 (168)
82 PRK15363 pathogenicity island 98.8 1.9E-07 4E-12 77.2 13.3 104 44-150 29-133 (157)
83 KOG1174 Anaphase-promoting com 98.8 1.1E-06 2.3E-11 82.3 19.2 187 44-233 261-509 (564)
84 PRK14574 hmsH outer membrane p 98.8 5.2E-07 1.1E-11 92.9 18.8 157 42-204 61-219 (822)
85 PRK11906 transcriptional regul 98.8 6.6E-07 1.4E-11 85.2 18.1 130 66-197 275-415 (458)
86 COG5010 TadD Flp pilus assembl 98.8 6.6E-07 1.4E-11 79.0 16.7 162 42-207 60-221 (257)
87 CHL00033 ycf3 photosystem I as 98.7 4.7E-07 1E-11 75.6 14.8 115 71-188 21-154 (168)
88 KOG1129 TPR repeat-containing 98.7 1.8E-07 3.9E-12 85.1 12.8 185 48-242 255-442 (478)
89 PRK14720 transcript cleavage f 98.7 8.1E-07 1.8E-11 91.3 19.0 144 38-185 20-180 (906)
90 TIGR02795 tol_pal_ybgF tol-pal 98.7 6E-07 1.3E-11 69.3 13.8 104 84-190 3-112 (119)
91 KOG0550 Molecular chaperone (D 98.7 1E-07 2.2E-12 88.9 10.8 163 38-203 192-372 (486)
92 KOG1127 TPR repeat-containing 98.7 2.7E-07 5.9E-12 93.5 14.5 160 63-232 472-633 (1238)
93 KOG0495 HAT repeat protein [RN 98.7 1.8E-06 3.8E-11 84.7 19.2 205 62-271 664-891 (913)
94 TIGR00540 hemY_coli hemY prote 98.7 3E-06 6.5E-11 80.9 20.6 178 56-244 160-385 (409)
95 cd00189 TPR Tetratricopeptide 98.7 5.1E-07 1.1E-11 64.5 11.7 98 52-152 3-100 (100)
96 KOG1156 N-terminal acetyltrans 98.6 8.7E-07 1.9E-11 86.5 15.4 139 62-203 20-158 (700)
97 KOG2002 TPR-containing nuclear 98.6 5.9E-07 1.3E-11 91.0 14.4 171 66-242 111-283 (1018)
98 PRK11906 transcriptional regul 98.6 1.1E-06 2.3E-11 83.8 15.3 151 75-232 240-409 (458)
99 PF01239 PPTA: Protein prenylt 98.6 5.4E-08 1.2E-12 58.6 4.3 29 103-131 2-30 (31)
100 PRK10747 putative protoheme IX 98.6 7E-06 1.5E-10 78.1 21.1 187 57-261 161-389 (398)
101 PF12569 NARP1: NMDA receptor- 98.6 5.9E-06 1.3E-10 81.1 20.9 50 155-204 195-244 (517)
102 PF01239 PPTA: Protein prenylt 98.6 7.3E-08 1.6E-12 58.0 4.8 31 138-168 1-31 (31)
103 PRK10153 DNA-binding transcrip 98.6 2.1E-06 4.5E-11 84.4 16.8 143 44-189 332-488 (517)
104 TIGR02795 tol_pal_ybgF tol-pal 98.6 2.5E-06 5.3E-11 65.8 13.5 102 51-155 4-111 (119)
105 KOG0495 HAT repeat protein [RN 98.5 4.8E-06 1E-10 81.7 16.9 183 42-234 678-890 (913)
106 PF13432 TPR_16: Tetratricopep 98.5 3.5E-07 7.5E-12 64.0 6.9 62 124-187 3-64 (65)
107 KOG2003 TPR repeat-containing 98.5 2E-06 4.4E-11 81.2 13.6 172 62-242 432-605 (840)
108 KOG1128 Uncharacterized conser 98.5 8.2E-07 1.8E-11 87.7 11.4 162 51-222 426-614 (777)
109 TIGR00540 hemY_coli hemY prote 98.5 6.1E-06 1.3E-10 78.8 17.1 142 70-222 246-397 (409)
110 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.3E-10 70.5 17.6 167 65-242 49-215 (257)
111 COG4783 Putative Zn-dependent 98.5 3.4E-05 7.3E-10 73.6 20.7 122 80-204 303-424 (484)
112 PRK14720 transcript cleavage f 98.4 3.7E-06 7.9E-11 86.6 14.6 124 75-201 23-163 (906)
113 PRK10153 DNA-binding transcrip 98.4 1.1E-05 2.4E-10 79.3 17.2 146 77-230 331-488 (517)
114 PF13432 TPR_16: Tetratricopep 98.4 1.4E-06 3E-11 60.9 7.4 62 89-153 3-64 (65)
115 KOG1128 Uncharacterized conser 98.4 5.1E-06 1.1E-10 82.3 13.1 183 44-243 390-601 (777)
116 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.7E-06 3.6E-11 82.4 9.0 69 78-149 70-141 (453)
117 PRK10747 putative protoheme IX 98.4 0.00015 3.3E-09 69.0 22.6 183 60-259 129-354 (398)
118 KOG1156 N-terminal acetyltrans 98.4 4.6E-06 9.9E-11 81.6 12.0 126 99-233 22-147 (700)
119 KOG1174 Anaphase-promoting com 98.4 2.7E-05 5.8E-10 73.1 16.5 190 46-240 229-449 (564)
120 COG4235 Cytochrome c biogenesi 98.3 2.2E-05 4.7E-10 70.9 15.4 123 66-189 139-262 (287)
121 PF13371 TPR_9: Tetratricopept 98.3 3.7E-06 8E-11 59.9 8.4 66 127-194 4-69 (73)
122 COG4783 Putative Zn-dependent 98.3 5.8E-05 1.3E-09 72.0 18.5 132 63-197 320-451 (484)
123 PF12895 Apc3: Anaphase-promot 98.3 2.2E-06 4.7E-11 63.3 7.1 79 99-180 4-84 (84)
124 KOG1129 TPR repeat-containing 98.3 5E-06 1.1E-10 75.9 10.1 176 45-230 286-464 (478)
125 KOG2003 TPR repeat-containing 98.3 1.8E-05 4E-10 74.9 13.8 169 62-234 469-664 (840)
126 PRK10803 tol-pal system protei 98.3 3.2E-05 6.9E-10 69.7 14.6 105 84-191 143-254 (263)
127 PRK10803 tol-pal system protei 98.2 3.2E-05 7E-10 69.7 14.3 97 57-156 151-253 (263)
128 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.4E-05 3E-10 76.2 11.7 69 44-113 70-141 (453)
129 KOG4234 TPR repeat-containing 98.2 1.4E-05 3E-10 68.5 10.3 98 90-190 102-204 (271)
130 COG0457 NrfG FOG: TPR repeat [ 98.2 0.00051 1.1E-08 55.8 19.2 173 45-227 91-268 (291)
131 COG4785 NlpI Lipoprotein NlpI, 98.2 9.4E-06 2E-10 70.4 8.8 111 81-194 63-175 (297)
132 KOG0543 FKBP-type peptidyl-pro 98.2 3.2E-05 6.8E-10 72.4 12.8 145 55-227 214-358 (397)
133 PF13371 TPR_9: Tetratricopept 98.2 1.5E-05 3.3E-10 56.7 8.4 61 59-120 5-65 (73)
134 KOG4234 TPR repeat-containing 98.2 2.4E-05 5.1E-10 67.1 10.8 96 58-156 104-204 (271)
135 PF12688 TPR_5: Tetratrico pep 98.2 5.6E-05 1.2E-09 60.1 12.3 95 119-222 2-102 (120)
136 PF12895 Apc3: Anaphase-promot 98.2 7.2E-06 1.6E-10 60.4 6.7 80 63-146 3-84 (84)
137 COG0457 NrfG FOG: TPR repeat [ 98.1 0.0011 2.5E-08 53.7 20.4 180 51-240 61-247 (291)
138 COG4235 Cytochrome c biogenesi 98.1 0.00013 2.7E-09 66.0 15.2 122 100-230 138-262 (287)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.5E-09 69.7 15.7 115 58-178 178-292 (395)
140 PF12569 NARP1: NMDA receptor- 98.1 0.00042 9.1E-09 68.2 19.5 225 46-279 35-360 (517)
141 PF06552 TOM20_plant: Plant sp 98.1 1.7E-05 3.6E-10 66.9 8.3 99 136-234 7-119 (186)
142 PF14559 TPR_19: Tetratricopep 98.0 2.5E-05 5.4E-10 54.8 6.6 57 136-192 7-63 (68)
143 PRK15331 chaperone protein Sic 98.0 0.00022 4.9E-09 59.4 12.8 104 79-186 33-136 (165)
144 KOG2376 Signal recognition par 97.9 0.00062 1.3E-08 66.5 17.0 119 63-189 26-145 (652)
145 PF12688 TPR_5: Tetratrico pep 97.9 0.0004 8.6E-09 55.2 12.9 98 84-184 2-105 (120)
146 PF06552 TOM20_plant: Plant sp 97.9 9.7E-05 2.1E-09 62.3 9.7 102 66-196 8-122 (186)
147 COG4785 NlpI Lipoprotein NlpI, 97.8 9.1E-05 2E-09 64.4 8.6 141 55-201 71-213 (297)
148 PF09976 TPR_21: Tetratricopep 97.8 0.0013 2.9E-08 53.4 14.9 127 51-181 11-145 (145)
149 COG2956 Predicted N-acetylgluc 97.8 0.002 4.3E-08 59.1 17.0 141 63-203 49-264 (389)
150 PF14559 TPR_19: Tetratricopep 97.8 0.00014 3.1E-09 50.8 7.3 54 100-155 7-60 (68)
151 KOG0543 FKBP-type peptidyl-pro 97.8 0.00024 5.1E-09 66.6 10.5 110 124-242 214-338 (397)
152 KOG1840 Kinesin light chain [C 97.7 0.002 4.3E-08 63.1 17.3 196 45-244 237-465 (508)
153 KOG4648 Uncharacterized conser 97.7 0.0001 2.2E-09 67.9 7.0 100 88-190 102-201 (536)
154 PF04733 Coatomer_E: Coatomer 97.7 0.00063 1.4E-08 62.2 11.7 158 61-230 114-271 (290)
155 PF13431 TPR_17: Tetratricopep 97.6 4.1E-05 8.8E-10 46.9 2.6 32 143-174 2-33 (34)
156 PRK15331 chaperone protein Sic 97.6 0.0011 2.3E-08 55.4 11.8 104 42-148 30-133 (165)
157 KOG1840 Kinesin light chain [C 97.6 0.0024 5.2E-08 62.6 16.1 172 46-220 196-399 (508)
158 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0016 3.4E-08 62.1 14.2 108 99-218 184-291 (395)
159 KOG4555 TPR repeat-containing 97.6 0.0018 3.9E-08 52.2 12.2 92 58-152 52-147 (175)
160 KOG4555 TPR repeat-containing 97.6 0.0016 3.5E-08 52.5 11.1 92 90-184 50-145 (175)
161 KOG4648 Uncharacterized conser 97.5 0.00018 4E-09 66.3 6.5 100 122-230 101-200 (536)
162 KOG2376 Signal recognition par 97.5 0.0059 1.3E-07 59.8 16.5 171 44-231 41-260 (652)
163 PF09976 TPR_21: Tetratricopep 97.5 0.0038 8.2E-08 50.7 13.2 114 99-222 26-145 (145)
164 PLN03218 maturation of RBCL 1; 97.5 0.023 5E-07 60.7 21.9 150 62-222 592-746 (1060)
165 PF00515 TPR_1: Tetratricopept 97.4 0.00035 7.5E-09 42.2 4.6 31 120-152 3-33 (34)
166 PF00515 TPR_1: Tetratricopept 97.4 0.00021 4.6E-09 43.1 3.6 33 155-187 2-34 (34)
167 PLN03081 pentatricopeptide (PP 97.4 0.014 3.1E-07 59.4 18.6 129 49-184 290-421 (697)
168 PLN03077 Protein ECB2; Provisi 97.4 0.024 5.2E-07 59.2 20.5 167 60-243 535-705 (857)
169 PLN03081 pentatricopeptide (PP 97.4 0.019 4.1E-07 58.6 19.2 177 62-244 338-543 (697)
170 KOG0376 Serine-threonine phosp 97.4 0.00016 3.4E-09 69.1 3.7 91 99-191 19-109 (476)
171 COG2956 Predicted N-acetylgluc 97.3 0.039 8.4E-07 50.8 18.4 153 66-228 158-315 (389)
172 KOG2796 Uncharacterized conser 97.3 0.0059 1.3E-07 54.7 12.9 130 66-196 194-331 (366)
173 PF13525 YfiO: Outer membrane 97.3 0.034 7.3E-07 47.9 17.3 145 83-230 5-176 (203)
174 PF04733 Coatomer_E: Coatomer 97.3 0.0054 1.2E-07 56.1 12.5 139 49-189 131-271 (290)
175 KOG0376 Serine-threonine phosp 97.2 0.00035 7.6E-09 66.8 4.4 124 63-194 18-141 (476)
176 PF13431 TPR_17: Tetratricopep 97.2 0.00041 8.9E-09 42.4 3.2 27 107-133 2-28 (34)
177 PF13424 TPR_12: Tetratricopep 97.2 0.00063 1.4E-08 49.0 4.7 63 119-183 6-75 (78)
178 PLN03218 maturation of RBCL 1; 97.2 0.15 3.3E-06 54.5 24.1 168 61-239 449-624 (1060)
179 PF07719 TPR_2: Tetratricopept 97.2 0.00076 1.6E-08 40.4 4.2 32 156-187 3-34 (34)
180 PRK10866 outer membrane biogen 97.1 0.064 1.4E-06 47.7 17.8 146 82-230 31-210 (243)
181 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.5E-08 42.6 4.9 40 156-195 3-42 (44)
182 PRK10866 outer membrane biogen 97.1 0.014 3E-07 52.0 13.5 113 116-230 30-159 (243)
183 PF07719 TPR_2: Tetratricopept 97.1 0.0016 3.4E-08 39.0 5.1 33 119-153 2-34 (34)
184 PLN03077 Protein ECB2; Provisi 97.1 0.054 1.2E-06 56.6 19.5 127 99-240 539-668 (857)
185 PF13525 YfiO: Outer membrane 97.0 0.04 8.6E-07 47.5 15.3 147 56-203 12-193 (203)
186 PF13428 TPR_14: Tetratricopep 97.0 0.0023 5.1E-08 41.1 5.2 39 120-160 3-41 (44)
187 PF13424 TPR_12: Tetratricopep 96.8 0.0041 8.9E-08 44.6 6.2 64 83-149 5-75 (78)
188 PF05843 Suf: Suppressor of fo 96.7 0.055 1.2E-06 49.1 13.7 126 65-192 17-145 (280)
189 KOG4642 Chaperone-dependent E3 96.7 0.0076 1.6E-07 53.2 7.5 88 58-148 19-106 (284)
190 PF13512 TPR_18: Tetratricopep 96.7 0.083 1.8E-06 43.1 13.1 110 119-230 11-134 (142)
191 KOG4642 Chaperone-dependent E3 96.6 0.01 2.2E-07 52.4 8.1 83 98-182 24-106 (284)
192 PF13512 TPR_18: Tetratricopep 96.6 0.11 2.3E-06 42.5 13.5 105 83-190 10-135 (142)
193 COG3071 HemY Uncharacterized e 96.6 0.43 9.3E-06 45.0 19.1 178 55-244 159-376 (400)
194 PF13181 TPR_8: Tetratricopept 96.6 0.0041 8.8E-08 37.2 3.8 31 155-185 2-32 (34)
195 KOG2053 Mitochondrial inherita 96.5 0.074 1.6E-06 54.6 14.4 134 99-242 24-158 (932)
196 KOG1308 Hsp70-interacting prot 96.4 0.0025 5.4E-08 58.8 3.1 86 63-151 128-213 (377)
197 PF04184 ST7: ST7 protein; In 96.3 0.2 4.4E-06 48.7 15.5 162 66-230 185-381 (539)
198 PF13181 TPR_8: Tetratricopept 96.2 0.011 2.3E-07 35.3 4.4 32 119-152 2-33 (34)
199 KOG3081 Vesicle coat complex C 96.1 0.91 2E-05 40.9 17.4 138 61-204 120-257 (299)
200 KOG0551 Hsp90 co-chaperone CNS 96.0 0.095 2.1E-06 48.5 11.0 112 82-196 78-195 (390)
201 PF08424 NRDE-2: NRDE-2, neces 96.0 0.47 1E-05 43.9 16.0 146 42-188 12-188 (321)
202 KOG2796 Uncharacterized conser 95.9 0.23 5E-06 44.8 12.9 162 99-269 192-363 (366)
203 KOG3785 Uncharacterized conser 95.9 0.72 1.6E-05 43.3 16.6 61 170-237 167-227 (557)
204 KOG0545 Aryl-hydrocarbon recep 95.9 0.1 2.2E-06 46.6 10.2 62 128-191 240-301 (329)
205 PF08424 NRDE-2: NRDE-2, neces 95.9 0.96 2.1E-05 41.9 17.5 112 70-183 6-131 (321)
206 KOG1915 Cell cycle control pro 95.7 0.82 1.8E-05 44.4 16.5 123 65-192 89-211 (677)
207 PF05843 Suf: Suppressor of fo 95.6 0.69 1.5E-05 41.9 15.4 142 84-234 2-146 (280)
208 PRK10941 hypothetical protein; 95.6 0.12 2.6E-06 46.8 10.1 61 136-196 197-257 (269)
209 KOG1308 Hsp70-interacting prot 95.6 0.0059 1.3E-07 56.4 1.6 102 89-192 118-221 (377)
210 PF14938 SNAP: Soluble NSF att 95.5 0.6 1.3E-05 42.2 14.5 186 45-241 28-244 (282)
211 KOG4340 Uncharacterized conser 95.4 0.63 1.4E-05 42.8 13.8 151 62-222 23-205 (459)
212 KOG2053 Mitochondrial inherita 95.3 0.58 1.2E-05 48.3 14.8 132 66-201 26-158 (932)
213 KOG0551 Hsp90 co-chaperone CNS 95.3 0.081 1.8E-06 48.9 8.0 107 50-159 80-192 (390)
214 COG3914 Spy Predicted O-linked 95.2 0.49 1.1E-05 46.8 13.3 124 41-166 57-188 (620)
215 KOG3785 Uncharacterized conser 95.1 0.89 1.9E-05 42.7 14.1 137 59-200 67-231 (557)
216 KOG3824 Huntingtin interacting 95.1 0.085 1.8E-06 48.4 7.4 115 11-127 74-193 (472)
217 PRK04841 transcriptional regul 95.0 2.6 5.7E-05 44.0 19.3 156 58-223 461-640 (903)
218 PRK10941 hypothetical protein; 94.9 0.24 5.2E-06 44.8 9.7 59 99-159 196-254 (269)
219 KOG0545 Aryl-hydrocarbon recep 94.7 0.25 5.5E-06 44.1 9.1 108 117-233 177-302 (329)
220 KOG1915 Cell cycle control pro 94.7 1.3 2.9E-05 43.0 14.4 150 70-232 60-210 (677)
221 KOG2610 Uncharacterized conser 94.6 0.43 9.3E-06 44.5 10.7 103 100-204 119-225 (491)
222 smart00028 TPR Tetratricopepti 94.4 0.076 1.7E-06 29.4 3.7 31 156-186 3-33 (34)
223 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.18 4E-06 34.0 5.5 42 156-197 3-44 (53)
224 COG1729 Uncharacterized protei 93.9 1.7 3.8E-05 39.0 12.8 96 58-157 151-252 (262)
225 KOG2396 HAT (Half-A-TPR) repea 93.8 0.83 1.8E-05 44.5 11.1 90 67-158 89-178 (568)
226 PF13176 TPR_7: Tetratricopept 93.7 0.11 2.4E-06 31.7 3.6 26 156-181 1-26 (36)
227 PF13174 TPR_6: Tetratricopept 93.7 0.11 2.3E-06 30.3 3.4 31 156-186 2-32 (33)
228 PRK04841 transcriptional regul 93.7 5.3 0.00011 41.8 18.1 157 58-224 418-602 (903)
229 PF10300 DUF3808: Protein of u 93.5 1.8 3.8E-05 42.3 13.3 104 99-204 248-356 (468)
230 KOG3081 Vesicle coat complex C 93.3 6 0.00013 35.8 16.1 174 70-257 94-269 (299)
231 KOG1310 WD40 repeat protein [G 93.3 0.33 7.1E-06 47.6 7.7 89 100-188 390-479 (758)
232 smart00028 TPR Tetratricopepti 93.3 0.2 4.3E-06 27.6 4.1 31 120-152 3-33 (34)
233 COG3071 HemY Uncharacterized e 93.3 4.8 0.0001 38.1 15.1 131 75-215 258-388 (400)
234 KOG1310 WD40 repeat protein [G 93.2 0.52 1.1E-05 46.3 8.7 107 46-154 365-479 (758)
235 PF02259 FAT: FAT domain; Int 93.0 6.9 0.00015 35.7 16.5 124 43-167 140-305 (352)
236 COG1729 Uncharacterized protei 93.0 2.7 5.8E-05 37.8 12.6 94 99-194 156-255 (262)
237 PF04184 ST7: ST7 protein; In 93.0 0.69 1.5E-05 45.1 9.4 128 98-241 182-341 (539)
238 KOG2396 HAT (Half-A-TPR) repea 93.0 1.4 3.1E-05 42.9 11.4 89 102-192 89-178 (568)
239 PF03704 BTAD: Bacterial trans 92.8 2.2 4.8E-05 34.1 11.0 64 46-110 59-122 (146)
240 COG4105 ComL DNA uptake lipopr 92.7 4.9 0.00011 36.0 13.6 110 117-230 33-151 (254)
241 KOG3824 Huntingtin interacting 92.6 0.24 5.2E-06 45.6 5.4 60 100-161 132-191 (472)
242 KOG2047 mRNA splicing factor [ 92.6 13 0.00028 37.7 17.7 222 42-270 20-253 (835)
243 PF03704 BTAD: Bacterial trans 92.3 1.1 2.5E-05 35.8 8.6 51 128-180 72-122 (146)
244 KOG2047 mRNA splicing factor [ 92.2 14 0.00031 37.4 17.5 175 47-230 385-585 (835)
245 KOG2610 Uncharacterized conser 92.2 3.2 7E-05 38.8 12.1 114 63-179 117-234 (491)
246 PF13174 TPR_6: Tetratricopept 92.1 0.41 8.8E-06 27.8 4.4 31 85-116 2-32 (33)
247 KOG1070 rRNA processing protei 91.9 5.1 0.00011 43.7 14.6 146 66-215 1514-1661(1710)
248 PF14938 SNAP: Soluble NSF att 91.8 2.3 4.9E-05 38.4 11.0 133 58-194 84-236 (282)
249 PF13281 DUF4071: Domain of un 91.1 3.4 7.4E-05 39.2 11.5 168 18-193 151-341 (374)
250 PF02259 FAT: FAT domain; Int 90.6 13 0.00028 33.8 17.7 146 79-227 142-341 (352)
251 COG5191 Uncharacterized conser 90.5 1.7 3.7E-05 40.1 8.6 85 107-193 96-181 (435)
252 KOG4340 Uncharacterized conser 90.3 3.9 8.4E-05 37.8 10.5 82 99-182 25-106 (459)
253 PF10300 DUF3808: Protein of u 90.0 7.1 0.00015 38.2 13.2 112 66-181 250-374 (468)
254 PF13176 TPR_7: Tetratricopept 90.0 0.5 1.1E-05 28.7 3.4 28 120-149 1-28 (36)
255 PF14853 Fis1_TPR_C: Fis1 C-te 89.8 2.2 4.7E-05 28.7 6.6 31 94-125 12-42 (53)
256 KOG1070 rRNA processing protei 89.5 38 0.00083 37.4 19.1 143 42-188 1451-1598(1710)
257 COG3118 Thioredoxin domain-con 89.4 10 0.00023 34.7 12.6 119 62-188 147-270 (304)
258 PF04781 DUF627: Protein of un 88.5 5.7 0.00012 31.0 9.0 56 65-120 12-80 (111)
259 COG4105 ComL DNA uptake lipopr 88.3 9.2 0.0002 34.3 11.4 80 153-239 33-117 (254)
260 COG5191 Uncharacterized conser 87.7 1.5 3.3E-05 40.5 6.2 86 71-159 95-181 (435)
261 PF04781 DUF627: Protein of un 87.3 5.6 0.00012 31.1 8.3 87 96-183 9-107 (111)
262 COG2912 Uncharacterized conser 87.0 3.8 8.3E-05 37.0 8.3 63 136-198 197-259 (269)
263 PF13281 DUF4071: Domain of un 86.9 29 0.00062 33.0 17.4 78 83-161 179-267 (374)
264 COG2912 Uncharacterized conser 86.4 4.8 0.0001 36.4 8.6 60 100-161 197-256 (269)
265 PF14561 TPR_20: Tetratricopep 84.6 3.6 7.9E-05 30.7 6.0 50 138-187 6-55 (90)
266 KOG1130 Predicted G-alpha GTPa 84.4 9.7 0.00021 36.7 9.8 69 157-225 98-185 (639)
267 COG3914 Spy Predicted O-linked 82.0 25 0.00053 35.3 11.9 120 68-189 50-177 (620)
268 COG4976 Predicted methyltransf 81.6 8.7 0.00019 34.2 7.9 64 136-199 11-74 (287)
269 PF10373 EST1_DNA_bind: Est1 D 81.3 6.4 0.00014 34.8 7.3 61 104-166 2-62 (278)
270 PRK13184 pknD serine/threonine 81.1 33 0.00071 36.6 13.3 131 63-196 489-633 (932)
271 PF13374 TPR_10: Tetratricopep 78.2 4.1 8.8E-05 24.6 3.7 29 155-183 3-31 (42)
272 KOG1941 Acetylcholine receptor 77.6 26 0.00057 33.3 10.0 115 66-183 139-275 (518)
273 PF09986 DUF2225: Uncharacteri 77.5 8.2 0.00018 33.7 6.6 67 119-185 119-196 (214)
274 KOG3617 WD40 and TPR repeat-co 77.4 47 0.001 35.0 12.5 50 155-204 913-983 (1416)
275 PF13226 DUF4034: Domain of un 76.6 53 0.0011 29.9 11.7 85 138-244 61-148 (277)
276 PF14561 TPR_20: Tetratricopep 76.5 13 0.00028 27.7 6.6 47 69-116 8-54 (90)
277 PRK15180 Vi polysaccharide bio 76.3 15 0.00033 36.1 8.4 119 72-193 312-430 (831)
278 PRK15180 Vi polysaccharide bio 75.6 19 0.00041 35.5 8.8 127 99-234 304-430 (831)
279 KOG3364 Membrane protein invol 75.3 34 0.00073 27.9 8.9 66 136-201 51-118 (149)
280 KOG4507 Uncharacterized conser 72.4 21 0.00045 36.0 8.4 94 63-159 621-715 (886)
281 KOG2471 TPR repeat-containing 67.6 26 0.00056 34.6 7.8 117 77-196 234-377 (696)
282 PRK13184 pknD serine/threonine 66.9 77 0.0017 33.9 11.8 129 99-230 490-626 (932)
283 COG4700 Uncharacterized protei 66.5 88 0.0019 27.2 17.7 155 65-227 72-229 (251)
284 COG4976 Predicted methyltransf 65.1 17 0.00036 32.5 5.5 63 65-128 11-73 (287)
285 PF13374 TPR_10: Tetratricopep 64.6 19 0.00041 21.4 4.5 28 120-149 4-31 (42)
286 PF13226 DUF4034: Domain of un 64.3 70 0.0015 29.1 9.6 67 103-169 62-148 (277)
287 COG4941 Predicted RNA polymera 64.0 1.3E+02 0.0029 28.4 13.4 126 65-190 212-401 (415)
288 KOG1130 Predicted G-alpha GTPa 63.7 40 0.00087 32.7 8.1 105 61-168 29-149 (639)
289 PF04910 Tcf25: Transcriptiona 63.1 1.4E+02 0.0029 28.2 20.7 135 41-183 3-168 (360)
290 PF10579 Rapsyn_N: Rapsyn N-te 62.0 41 0.0009 24.6 6.2 48 136-183 22-72 (80)
291 COG4700 Uncharacterized protei 61.9 1.1E+02 0.0024 26.7 13.2 133 100-242 72-207 (251)
292 PF10373 EST1_DNA_bind: Est1 D 61.9 46 0.001 29.2 8.1 62 68-130 1-62 (278)
293 KOG2471 TPR repeat-containing 61.8 12 0.00026 36.8 4.4 78 84-164 284-379 (696)
294 PF14863 Alkyl_sulf_dimr: Alky 60.9 11 0.00025 30.6 3.6 71 23-97 42-118 (141)
295 COG3118 Thioredoxin domain-con 59.9 1.4E+02 0.0031 27.4 12.5 125 93-228 144-269 (304)
296 KOG1941 Acetylcholine receptor 58.6 1.6E+02 0.0034 28.3 10.9 86 99-186 137-238 (518)
297 PF07720 TPR_3: Tetratricopept 57.9 25 0.00055 21.5 4.0 30 157-186 4-35 (36)
298 KOG3617 WD40 and TPR repeat-co 56.5 1.1E+02 0.0024 32.4 10.3 62 82-146 911-993 (1416)
299 PF12862 Apc5: Anaphase-promot 55.9 54 0.0012 24.2 6.4 32 154-185 41-72 (94)
300 smart00386 HAT HAT (Half-A-TPR 54.3 34 0.00075 18.8 4.1 23 66-88 4-26 (33)
301 PF04910 Tcf25: Transcriptiona 53.1 2E+02 0.0044 27.1 14.9 150 42-194 33-233 (360)
302 PF07720 TPR_3: Tetratricopept 52.7 51 0.0011 20.1 4.9 31 121-153 4-36 (36)
303 KOG3364 Membrane protein invol 51.8 1.3E+02 0.0029 24.6 8.8 66 66-132 52-119 (149)
304 COG3629 DnrI DNA-binding trans 51.5 1.9E+02 0.0042 26.3 10.5 55 92-149 162-216 (280)
305 KOG4507 Uncharacterized conser 51.2 83 0.0018 31.9 8.2 105 63-170 227-333 (886)
306 KOG1914 mRNA cleavage and poly 50.7 2.8E+02 0.006 28.0 14.9 48 39-87 10-57 (656)
307 KOG1586 Protein required for f 43.9 2.4E+02 0.0053 25.4 12.8 122 64-194 88-235 (288)
308 PF09986 DUF2225: Uncharacteri 40.1 1.9E+02 0.0042 25.0 8.2 87 63-151 90-196 (214)
309 cd02682 MIT_AAA_Arch MIT: doma 34.8 1.7E+02 0.0036 21.1 5.8 33 66-98 30-62 (75)
310 PF09797 NatB_MDM20: N-acetylt 34.3 1.6E+02 0.0035 27.5 7.3 88 136-223 199-287 (365)
311 cd02682 MIT_AAA_Arch MIT: doma 30.9 1.3E+02 0.0028 21.7 4.7 38 201-238 19-56 (75)
312 PF13041 PPR_2: PPR repeat fam 29.8 1.2E+02 0.0026 19.1 4.1 33 153-185 2-34 (50)
313 PF07079 DUF1347: Protein of u 29.5 5.7E+02 0.012 25.3 18.3 127 58-194 389-531 (549)
314 PF04212 MIT: MIT (microtubule 29.4 85 0.0019 21.6 3.5 15 137-151 3-17 (69)
315 COG3629 DnrI DNA-binding trans 29.1 3E+02 0.0065 25.1 7.8 47 136-182 169-215 (280)
316 KOG1585 Protein required for f 28.9 4E+02 0.0086 24.3 8.2 97 125-231 38-146 (308)
317 PF01535 PPR: PPR repeat; Int 28.4 82 0.0018 17.1 2.8 27 157-183 3-29 (31)
318 KOG4814 Uncharacterized conser 26.7 7.4E+02 0.016 25.7 10.9 83 99-183 369-457 (872)
319 PF12968 DUF3856: Domain of Un 25.9 3.5E+02 0.0077 21.8 9.3 79 136-221 25-126 (144)
320 KOG1914 mRNA cleavage and poly 24.6 7.5E+02 0.016 25.1 16.2 49 73-123 10-58 (656)
321 cd02677 MIT_SNX15 MIT: domain 24.6 1E+02 0.0022 22.1 3.3 17 136-152 3-19 (75)
322 PF14863 Alkyl_sulf_dimr: Alky 24.5 2.1E+02 0.0045 23.2 5.4 35 99-133 85-119 (141)
323 COG5107 RNA14 Pre-mRNA 3'-end 24.1 7.2E+02 0.016 24.7 12.8 31 211-241 134-164 (660)
324 PF15297 CKAP2_C: Cytoskeleton 24.1 4.3E+02 0.0094 24.9 8.0 64 56-120 110-176 (353)
325 PF12583 TPPII_N: Tripeptidyl 23.4 3.4E+02 0.0074 22.0 6.2 49 46-95 73-122 (139)
326 cd02679 MIT_spastin MIT: domai 23.1 1.6E+02 0.0034 21.5 4.0 16 136-151 5-20 (79)
327 KOG3783 Uncharacterized conser 22.7 7.9E+02 0.017 24.7 9.8 94 100-195 249-344 (546)
328 PF14929 TAF1_subA: TAF RNA Po 22.4 8E+02 0.017 24.7 15.4 172 67-241 276-467 (547)
329 COG3947 Response regulator con 22.3 4.7E+02 0.01 24.4 7.6 35 99-133 294-328 (361)
330 COG3947 Response regulator con 22.1 2.2E+02 0.0049 26.4 5.5 40 164-203 289-328 (361)
331 PF12968 DUF3856: Domain of Un 21.7 4.3E+02 0.0094 21.3 9.0 25 158-182 104-128 (144)
332 KOG3252 Uncharacterized conser 21.7 2.9E+02 0.0064 23.8 5.8 55 43-97 19-74 (217)
333 PF12854 PPR_1: PPR repeat 21.5 1.5E+02 0.0032 17.4 3.0 26 154-179 7-32 (34)
334 COG2976 Uncharacterized protei 21.3 3.4E+02 0.0074 23.6 6.3 81 99-188 104-193 (207)
335 PF14929 TAF1_subA: TAF RNA Po 21.1 8.6E+02 0.019 24.5 13.4 136 62-201 322-468 (547)
336 cd02656 MIT MIT: domain contai 20.9 1.7E+02 0.0037 20.4 3.8 14 137-150 4-17 (75)
337 PF12862 Apc5: Anaphase-promot 20.5 3.5E+02 0.0075 19.7 6.7 29 119-149 42-70 (94)
338 smart00745 MIT Microtubule Int 20.4 1.7E+02 0.0037 20.4 3.8 16 136-151 5-20 (77)
No 1
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-61 Score=415.30 Aligned_cols=241 Identities=52% Similarity=0.884 Sum_probs=225.9
Q ss_pred ccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 023284 16 LPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET 95 (284)
Q Consensus 16 ~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~ 95 (284)
++|++|-+|+||+||||++|++|+|+|.|+.+|.++|.||||++.++++|+|||++|+.+|.+||.+||+|++|+.||.+
T Consensus 10 ~~y~d~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~ 89 (318)
T KOG0530|consen 10 VLYSDRYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRH 89 (318)
T ss_pred hhhhhhcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 96 LHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN-KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 96 l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~-eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
++.++.+||++++.++..+|||||+|+||++++..+|. .. .||+++..+|..|.||||||+||+|+++.++.|+.||
T Consensus 90 l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 90 LMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999997 55 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL 254 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~ 254 (284)
.+++++|+.|.+|+|||++|.+++....+..+ +..+++|+.+..+.|.+.|+|+|+|+|++|++.. .+++.++|.+.+
T Consensus 168 ~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~-~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~-d~gl~s~s~vv~ 245 (318)
T KOG0530|consen 168 AYADELLEEDIRNNSAWNQRYFVITNTKGVIS-KAELERELNYTKDKILLVPNNESAWNYLKGLLEL-DSGLSSDSKVVS 245 (318)
T ss_pred HHHHHHHHHhhhccchhheeeEEEEeccCCcc-HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-ccCCcCCchHHH
Confidence 99999999999999999999999877433221 2457999999999999999999999999999998 455888888887
Q ss_pred HHHhhh
Q 023284 255 SVFESF 260 (284)
Q Consensus 255 ~~~~~~ 260 (284)
-+-+.+
T Consensus 246 f~~~l~ 251 (318)
T KOG0530|consen 246 FVENLY 251 (318)
T ss_pred HHHHHh
Confidence 665543
No 2
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=5.6e-58 Score=421.46 Aligned_cols=249 Identities=70% Similarity=1.243 Sum_probs=231.9
Q ss_pred cccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 023284 13 AERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQI 92 (284)
Q Consensus 13 ~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~ 92 (284)
++++||++||+|+||+|||+++|++|||+|.|+|+|.+||++||+++.+++++++||.+|+++|++||+++++|++||.+
T Consensus 1 ~~~~~~~~~~~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~i 80 (320)
T PLN02789 1 DEWVPLSQRPEWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLC 80 (320)
T ss_pred CCCCCcccCCCcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHH
Q 023284 93 IETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED 172 (284)
Q Consensus 93 L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~e 172 (284)
|..++..+++||.++++++..+||||++|+||+|++.++|.....+|+++++++|++||+|+|||+||+|++..+++|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 99999778999999999999999999999999999999987335789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhh
Q 023284 173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252 (284)
Q Consensus 173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~ 252 (284)
|+++++++|+.||+|+|||++|++++.+++...+...+.++|++++.++|.++|+|+|+|+|+++++...++++..+|++
T Consensus 161 eL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 99999999999999999999999999887543333334678999999999999999999999999999988888888888
Q ss_pred HHHHHhhhh
Q 023284 253 LLSVFESFE 261 (284)
Q Consensus 253 ~~~~~~~~~ 261 (284)
+.-|.+.+.
T Consensus 241 ~~~~~~~~~ 249 (320)
T PLN02789 241 SSVCLEVLS 249 (320)
T ss_pred HHHHHHhhc
Confidence 776666544
No 3
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=258.60 Aligned_cols=217 Identities=37% Similarity=0.709 Sum_probs=190.1
Q ss_pred CCCccccCCC-CCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-----
Q 023284 24 WSDVTPIPQD-DGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH----- 97 (284)
Q Consensus 24 ~~dv~pi~~~-~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~----- 97 (284)
+.+|.|.|.. +..++.+.|.|..+|...++++++...+.++|.+||++|..+|..||+++++|+||+.++.+..
T Consensus 6 ~~r~~~~~~q~~l~~~l~ri~~~e~y~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sed 85 (328)
T COG5536 6 LRRVKPLPIQFDLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSED 85 (328)
T ss_pred chhccccccchhhhhHHHHHHhhhccchHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhccc
Confidence 4567777653 4578999999999999999999999999999999999999999999999999999999999832
Q ss_pred --hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH------HHccC
Q 023284 98 --TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL------QALGG 169 (284)
Q Consensus 98 --~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl------~~l~~ 169 (284)
.-+..+|++++.++.-+||+|++|+||+|++.......+..|+.+++++|+.||+|||+|+||.|++ ..+..
T Consensus 86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~ 165 (328)
T COG5536 86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD 165 (328)
T ss_pred chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchh
Confidence 2368999999999999999999999999999998555599999999999999999999999999999 44445
Q ss_pred cHHHHHHHHHHHhccCCChHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 170 WEDELDYCQMLLGEDIFNNSAWNQRYFVVTR---SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 170 ~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~---l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
+..++++...+|+.|+.|+|||+||..+... -+.... +..+++||++..+++..+|+|.|+|.|+++++..
T Consensus 166 ~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vis-qk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 166 LKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVIS-QKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 6889999999999999999999999544332 222211 1247899999999999999999999999999887
No 4
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=6.3e-33 Score=255.36 Aligned_cols=198 Identities=25% Similarity=0.416 Sum_probs=174.9
Q ss_pred ceeecChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC-HHHHHHHHHHHHHhCCCC
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDE-RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-LQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~-~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~-~~~eL~~~~~~l~~~pkn 117 (284)
..|++||++.++|++|+.++...+ ..+++|++++++|+.||+++++|+||++++..++.. +++|+.+++++|..+|||
T Consensus 62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence 678899999999999999999887 458999999999999999999999999999999852 478999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc---cCc----HHHHHHHHHHHhccCCChHH
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL---GGW----EDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l---~~~----~eeL~~~~~~l~~dp~n~sA 190 (284)
++||+||+|++..+|. +++||++|+++|++||+|++||+||++++.++ +.+ ++|++++.++|.++|+|.||
T Consensus 142 y~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 142 YHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence 9999999999999999 99999999999999999999999999999887 333 58999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
|+|++.++...+.. . ....++++++.+++..+|++.-+-.++.-++...
T Consensus 220 W~Yl~~ll~~~~~~--l-~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 220 WRYLRGLFKDDKEA--L-VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhcCCcc--c-ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 99999999874321 0 0014467888999999998888877777777653
No 5
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=246.83 Aligned_cols=192 Identities=34% Similarity=0.584 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-----------CHHHHHHHHHHHHHhCCCCh
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-----------DLQDELAFVGRIAKSNSKNY 118 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-----------~~~~eL~~~~~~l~~~pkn~ 118 (284)
.+++.+-.....++++.+++.++..++..||+.+++||+|+.++..... .+.++|.+...++..|||+|
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 3444444445568899999999999999999999999999999876432 36799999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC----cHHHHHHHHHHHhccCCChHHHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG----WEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~----~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
.+|+||+|+|.+.+...+..||.+|+++|+.||+|||+|+||.+|+....+ ..+|+++++++|..|++|+|||+||
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHH
Confidence 999999999999886568999999999999999999999999999988764 6899999999999999999999999
Q ss_pred HHHHhcCCCC--ch---hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 195 YFVVTRSPLL--GG---LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 195 ~~ll~~l~~~--~~---~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
..+|..+-.- ++ ...++.+|++++.+||..+|+|+|+|.|.+.++..
T Consensus 190 s~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 190 SLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 9999876321 22 23567899999999999999999999999999987
No 6
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-28 Score=211.40 Aligned_cols=158 Identities=31% Similarity=0.498 Sum_probs=146.4
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHH-HHHHHHHHHHHhCCCC
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ-DELAFVGRIAKSNSKN 117 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~-~eL~~~~~~l~~~pkn 117 (284)
-.|.+||.++++|.|||.++....-. .+.|+..+.++.-||+||++|+||+.+++.+| +.. .||+|+..+|..+.||
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~-d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG-DPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc-CcccchHHHHHHHHhccccc
Confidence 56889999999999999999876543 68999999999999999999999999999999 566 9999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC------cHHHHHHHHHHHhccCCChHHH
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGEDIFNNSAW 191 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~------~~eeL~~~~~~l~~dp~n~sAW 191 (284)
||||.||+|+++.++. +++||++++.+|+.|.+|.+||+||.+++..... .+.|+.++.+.|...|.|.|||
T Consensus 147 YHaWshRqW~~r~F~~--~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 147 YHAWSHRQWVLRFFKD--YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred hhhhHHHHHHHHHHhh--HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 9999999999999998 9999999999999999999999999999876332 3789999999999999999999
Q ss_pred HHHHHHHhc
Q 023284 192 NQRYFVVTR 200 (284)
Q Consensus 192 ~~r~~ll~~ 200 (284)
+|...++..
T Consensus 225 nYL~G~l~~ 233 (318)
T KOG0530|consen 225 NYLKGLLEL 233 (318)
T ss_pred HHHHHHHHh
Confidence 999888876
No 7
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-25 Score=205.30 Aligned_cols=160 Identities=26% Similarity=0.519 Sum_probs=142.8
Q ss_pred eeecChhHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC-HHHHHHHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDE------------RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD-LQDELAFV 107 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~------------~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~-~~~eL~~~ 107 (284)
.+.-||++..+|+++|-++.... ..++.|.+...+|+.||+.|.+|++|+++|++.+.. ++.||.++
T Consensus 55 ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lc 134 (421)
T KOG0529|consen 55 LLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLC 134 (421)
T ss_pred HHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45579999999999998876432 235789999999999999999999999999998866 99999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc------cC------cHHH
Q 023284 108 GRIAKSNSKNYQLWHHRRWVAEKLGTG--AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL------GG------WEDE 173 (284)
Q Consensus 108 ~~~l~~~pkn~~aW~hR~~ll~~l~~~--~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l------~~------~~ee 173 (284)
+++|+.||+||++|+||++++....+. ...+|+++++++|..+++|||||+||.+++..+ |. ...|
T Consensus 135 ek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sE 214 (421)
T KOG0529|consen 135 EKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSE 214 (421)
T ss_pred HHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHH
Confidence 999999999999999999999987542 368999999999999999999999999999865 21 3689
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 174 LDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 174 L~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
++.+..++..||.|.|+|+|..+++.+
T Consensus 215 le~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 215 LEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHHhcCccccceeeehHHhhcc
Confidence 999999999999999999999999887
No 8
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.9e-21 Score=166.95 Aligned_cols=161 Identities=27% Similarity=0.463 Sum_probs=136.4
Q ss_pred ceeecChhHHHHHHHHHHHHhc-------C-CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-hCHHHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYS-------D-ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-TDLQDELAFVGRI 110 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~-------~-~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-~~~~~eL~~~~~~ 110 (284)
-.|.-||++.++|+|++.++.. . -+-+..|+..+.+++-||++|+.|+||+++|+... ..++.|+.++.++
T Consensus 57 elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkkl 136 (328)
T COG5536 57 ELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKL 136 (328)
T ss_pred HHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHH
Confidence 4466789999999999999886 1 12257899999999999999999999999999873 2589999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH---ccC------cHHHHHHH
Q 023284 111 AKSNSKNYQLWHHRRWVAEKLGT----GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA---LGG------WEDELDYC 177 (284)
Q Consensus 111 l~~~pkn~~aW~hR~~ll~~l~~----~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~---l~~------~~eeL~~~ 177 (284)
|..||+||++|+||+|++....+ ..+.+|+++...+|.-|+.|++||+||-..+.. -|+ ++++|++.
T Consensus 137 ld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i 216 (328)
T COG5536 137 LDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYI 216 (328)
T ss_pred hcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 99999999999999999943211 227889999999999999999999999333322 222 58999999
Q ss_pred HHHHhccCCChHHHHHHHHHHhc
Q 023284 178 QMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 178 ~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
-.++..+|.|.|+|.|.+.+...
T Consensus 217 ~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 217 FDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HhhhhcCccccchhhHHHHHhcc
Confidence 99999999999999999887765
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=5.6e-18 Score=162.34 Aligned_cols=191 Identities=9% Similarity=0.070 Sum_probs=181.9
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ 119 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~ 119 (284)
-.|++.|+|.+|++.....++..+.-.+|.++|.++|.++|.++.+-++.+.+....| .++++..+|.+++..+|....
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~-~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG-KIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-cchHHHHHHHHHHhhChhhhh
Confidence 3578999999999999999999999999999999999999999999999999999999 489999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
+.++.+.++++-|+ +++++.+|..+|.++|....|.+++|..+..+|+.+.|+.++.++|.++|....|.++.+.+.+
T Consensus 390 a~nNLa~i~kqqgn--l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 390 AHNNLASIYKQQGN--LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhHHHHHHhccc--HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 200 RSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
..|.. .++|+.|.++|++.|+.+.+...+...++
T Consensus 468 DsGni-------~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 468 DSGNI-------PEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred ccCCc-------HHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 88874 78999999999999999999888776655
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.5e-17 Score=165.94 Aligned_cols=179 Identities=12% Similarity=0.006 Sum_probs=167.7
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
+.|+...++..++.+....+..++|+..++++|.++|.+..+|..++.++..+| ++++++..+++++..+|++..+|.+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357777888888888888888899999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
+|.++..+|+ +++++.+++++++++|.+..+|.+++.++..+|++++|+..+++++..+|.+..+++++|.++...++
T Consensus 405 lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 405 RAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 204 LGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
+ +++++++++++.++|++...+
T Consensus 483 ~-------~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 483 F-------DEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred H-------HHHHHHHHHHHhcCCcccccc
Confidence 4 789999999999999875543
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.7e-17 Score=162.42 Aligned_cols=207 Identities=9% Similarity=0.038 Sum_probs=179.6
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
.|.++|++..++..++.++...+..++|+..++++|.++|++..+|++++.++..+| ++++++.++++++.++|++..+
T Consensus 357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG-EFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCccCHHH
Confidence 356789999999999999888888899999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH------HH
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN------QR 194 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~------~r 194 (284)
|..++.++..+|+ +++++..++++++.+|.+..+|++.|.++...|++++|+++++++++++|.+...+. .+
T Consensus 436 ~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999998655443 22
Q ss_pred HHHHhc-CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 195 YFVVTR-SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 195 ~~ll~~-l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
+.++.. .++ ++++++.+.+++.++|++..++..++.++...++ .++++..+-++++
T Consensus 514 a~~~~~~~~~-------~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~----~~eAi~~~e~A~~ 570 (615)
T TIGR00990 514 ALALFQWKQD-------FIEAENLCEKALIIDPECDIAVATMAQLLLQQGD----VDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHhhh-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----HHHHHHHHHHHHH
Confidence 322222 233 5788999999999999999888888777776643 5566666655543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=1.4e-17 Score=159.68 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=177.4
Q ss_pred CCCCccccCCCCCCC------CcceeecChhHHHHHHHHHHHHhcCCCC-------------------------------
Q 023284 23 EWSDVTPIPQDDGPN------PVVPIAYKPEFSETMSYFRAVYYSDERS------------------------------- 65 (284)
Q Consensus 23 ~~~dv~pi~~~~~~~------~~~~I~~~p~~~~a~~~~r~~~~~~~~s------------------------------- 65 (284)
.|++++=+--..|.. =--++.+.|+|.+|+...+.+++.....
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 366666655444421 1145678888888887776666643333
Q ss_pred ---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 66 ---SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 66 ---~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
+=|+..|.++|.+.|.+..|+++.+..|+.+| +..++..|+.++|...|...++-++.|.+....|. ++++..+
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~l 376 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG-SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRL 376 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc-chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHH
Confidence 44666667777777777777777788888877 47788888888888888888888888888888887 8888888
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
|.++|+..|....|.++.+.++++-|++++|+.+|..+|++.|....|++++|..++.+|+. ..+++++.++|
T Consensus 377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-------~~A~q~y~rAI 449 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-------SAAIQCYTRAI 449 (966)
T ss_pred HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-------HHHHHHHHHHH
Confidence 88888888888888888888888888888899999999999999889999998888888874 67899999999
Q ss_pred hcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 223 LGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 223 ~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
.++|.-..+.+.+..+....|+ -|++|.++..+|.
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGn----i~~AI~sY~~aLk 484 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGN----IPEAIQSYRTALK 484 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCC----cHHHHHHHHHHHc
Confidence 9999999999999999887765 4788888888754
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=7.9e-16 Score=126.23 Aligned_cols=127 Identities=11% Similarity=-0.034 Sum_probs=119.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS 148 (284)
Q Consensus 69 L~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~ 148 (284)
-.+++++|.++|++ +..++.++...| ++++++.+++.++..+|.++.+|..+|.++..+|+ +++++.++.++++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEG-DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHHHHHHHh
Confidence 46789999999997 567899999999 59999999999999999999999999999999999 9999999999999
Q ss_pred hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 149 LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 149 ~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
++|.+..+|+++|.++..+|++++|++.++++|+.+|.|..+|..|+.+...+
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886543
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.8e-16 Score=153.20 Aligned_cols=192 Identities=13% Similarity=0.079 Sum_probs=171.7
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
|.-+|+-++.|...+.++.-++..+.|++++.++|+++|.+.-|+--.|.=+.... .+++++.+|+++|..+|++|.||
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE-EFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH-HHHhHHHHHHhhhcCCchhhHHH
Confidence 55677888899999999888888899999999999999998888766666555555 58999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
+.-|.++.+.++ ++.|.-.+.+|++++|+|--.-.|-|-++.++|+.++||..+++|+-+||.|.-.-++|+.++..+
T Consensus 493 YGlG~vy~Kqek--~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEK--LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred Hhhhhheeccch--hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 999999999988 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
+++ ++|+.-.+++-++.|++.++..-++-++..++
T Consensus 571 ~~~-------~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 571 GRY-------VEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred cch-------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 986 67788888888899999888866666666543
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=2.7e-15 Score=148.14 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=166.9
Q ss_pred ceeecChhHHHHHHHHHHHHh---c------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYY---S------DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI 110 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~---~------~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~ 110 (284)
-+|+++|++..++.....+.. . .+..++|+..++++++++|++..+|..++.++...| ++++++..++++
T Consensus 286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g-~~~~A~~~~~~A 364 (553)
T PRK12370 286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS-EYIVGSLLFKQA 364 (553)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Confidence 346788888887765554322 1 122478999999999999999999999999999989 699999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCChH
Q 023284 111 AKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFNNS 189 (284)
Q Consensus 111 l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n~s 189 (284)
+..+|.+..+|++.+.++...|+ +++++..++++++++|.+..++.+++.++...|++++|++.+.++++.+ |++..
T Consensus 365 l~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 365 NLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 99999999999999999999999 9999999999999999998888888888888999999999999999886 78888
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
++.+.+.++..+|+. +++.+.+.+++...|.+..+++.+...+...+
T Consensus 443 ~~~~la~~l~~~G~~-------~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 443 LLSMQVMFLSLKGKH-------ELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHHHhCCCH-------HHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 899999999889884 77888888888888888888877766655443
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=3.7e-15 Score=136.21 Aligned_cols=207 Identities=7% Similarity=-0.059 Sum_probs=157.0
Q ss_pred cChhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 44 YKPEF-SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 44 ~~p~~-~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
++|+. ..++..++.++...+..++|+..++++|+++|++..+|+.+|.++..+| ++++++..++++++++|++..+|.
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAYL 136 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44444 6778888888888888899999999999999999999999999999999 699999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
.+|.++...|+ ++++++.++++++++|.+....... .+....+++++|++.+.+.+...+.+...| +.+...++
T Consensus 137 ~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg 210 (296)
T PRK11189 137 NRGIALYYGGR--YELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLG 210 (296)
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHcc
Confidence 99999999999 9999999999999999997321111 123445678999999988776654443333 23333345
Q ss_pred CCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 203 LLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 203 ~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
+.... ..++..++.+...++++|+...+|+|++.++...++ .++++.++.++++-
T Consensus 211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~----~~~A~~~~~~Al~~ 265 (296)
T PRK11189 211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD----LDEAAALFKLALAN 265 (296)
T ss_pred CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHh
Confidence 44321 122333344445556777777889888888776643 66777777777653
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=1.3e-14 Score=143.33 Aligned_cols=169 Identities=11% Similarity=0.042 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT--------DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~--------~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
++|++++++++.++|++..+|...+.+...++. ++.+++..+++++..+|++..+|..++.++...|+ ++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--YI 355 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HH
Confidence 689999999999999999999999887665432 37899999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNF 217 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~ 217 (284)
+++..++++++++|.+..+|++.+.++...|++++|+..++++++++|.+..++..++.++...+++ +++++.
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~-------eeA~~~ 428 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI-------DDAIRL 428 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999988777777666666663 778999
Q ss_pred HHHHHhcC-CCCccHHHHHHHHHccCC
Q 023284 218 TIEAILGN-PENESPWRYLRGLYKDDT 243 (284)
Q Consensus 218 ~~~~i~~~-P~nesaW~y~~~ll~~~~ 243 (284)
+.+++..+ |+++.++.+++.++...+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 99999875 778888877777765543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.64 E-value=3.7e-14 Score=142.70 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=119.0
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|++..++...+.++...+..++|++.+++++.++|++..+|..++.++...| ++++++..+.+++..+|.+..++
T Consensus 103 l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 103 LAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHH
Confidence 44566666666666666666666677777777777777777777777777666666 35566666666666665555554
Q ss_pred HHH----------------------------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284 122 HHR----------------------------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 122 ~hR----------------------------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l 167 (284)
... +.++...|+ +++++..+.++++.+|.+..++...+.++...
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK--YQEAIQTGESALARGLDGAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 322 112222333 55566666666666666666666666666666
Q ss_pred cCcHH----HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 168 GGWED----ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 168 ~~~~e----eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
|++++ |+..++++++.+|++..++..++.++...+++ ++++..+++++.++|++..++.++..++...
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-------~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN-------EKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 66654 56666666666666666666666666666653 5566666666777777666666665555443
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=7.2e-15 Score=120.53 Aligned_cols=125 Identities=7% Similarity=-0.080 Sum_probs=116.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
..+++++..+|.+ +.+++.++...|+ +++++.++.+++.++|.+..+|..+|.++..+|++++|+.++.++++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD--YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5689999999996 6688999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
|.+..+|+++|.++..+|++ ++++..++++|...|+++..|..++.....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~-------~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEP-------GLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999984 789999999999999999999776655443
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.2e-15 Score=144.58 Aligned_cols=180 Identities=18% Similarity=0.169 Sum_probs=163.6
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
+|+++|.|.-|+...+-=....+-.+.|..+|..+|..+|.||-||+..|.+..+.++ ++.|.-.|.+|+.+||.|...
T Consensus 447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~nsvi 525 (638)
T KOG1126|consen 447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSNSVI 525 (638)
T ss_pred hhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccchhH
Confidence 5778888888877776655555556899999999999999999999999999999995 899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
-.|-|.++.++|+ .+++|.++++|+.+||+|.++=++|+.++..++++++||.-++++-+.-|++.++++-.|.+..+
T Consensus 526 ~~~~g~~~~~~k~--~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 526 LCHIGRIQHQLKR--KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred HhhhhHHHHHhhh--hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
+++. +.++.-+.-|..++|.-..
T Consensus 604 ~~~~-------~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 604 LGNT-------DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred Hccc-------hHHHHhhHHHhcCCCccch
Confidence 9875 4567777788888887543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=1.2e-13 Score=139.10 Aligned_cols=204 Identities=7% Similarity=-0.067 Sum_probs=159.4
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR-------------------------------- 89 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R-------------------------------- 89 (284)
+.++|+...++.....++...+..++|+..+..++..+|++..++...
T Consensus 137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 455677776666666666666666666666666666666666555332
Q ss_pred --HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 90 --RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK----ELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 90 --~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e----el~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
+.++...| ++++++..+++++..+|.+..++...+.++...|+ +++ ++..++++++++|.+..+|...+.+
T Consensus 217 ~l~~~l~~~g-~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 217 LAVDTLCAVG-KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--SREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 33344445 57889999999999999999999999999999998 765 7999999999999999999999999
Q ss_pred HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
+...|++++|+..++++++.+|.+..++.+++.++...+++ +++++.+.+++..+|++.....+...++...+
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~-------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY-------TAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999998884 77899999999999998765544444444433
Q ss_pred ccCCCChhhHHHHHhh
Q 023284 244 ESWINDPRMLLSVFES 259 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~ 259 (284)
+..+++..+..+
T Consensus 367 ----~~deA~~~l~~a 378 (656)
T PRK15174 367 ----KTSEAESVFEHY 378 (656)
T ss_pred ----CHHHHHHHHHHH
Confidence 234444444444
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=5.4e-13 Score=113.67 Aligned_cols=183 Identities=8% Similarity=0.002 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
..++...+..+...+..++|++.+++++..+|.+..++..++.+....| +++++++.+++++..+|++..++...+.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4566667777777888899999999999999999999999999999999 699999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhC--cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch
Q 023284 129 EKLGTGAVNKELQFTKKMLSLD--AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG 206 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~d--pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~ 206 (284)
...|+ +++++..+.+++... +.....|...+.++...|+++++..++.+++..+|.+..++..++.++...+++
T Consensus 110 ~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-- 185 (234)
T TIGR02521 110 CQQGK--YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY-- 185 (234)
T ss_pred HHccc--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH--
Confidence 99999 999999999999853 567789999999999999999999999999999999999999999998888874
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 207 LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 207 ~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
++++.++.+++...|.+...+.....+...
T Consensus 186 -----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 186 -----KDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 778889999998888887766555444443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=2.4e-13 Score=141.46 Aligned_cols=170 Identities=9% Similarity=-0.042 Sum_probs=147.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
+...+.++...+..++|+.++.+++..+|.+..+.......+...| ++++++..+++++..+|. ..+|...+.++.++
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G-r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG-QPELALNDLTRSLNIAPS-ANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence 3333444555667788999999999999998777665444444557 699999999999999996 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhH
Q 023284 132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMR 211 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~ 211 (284)
|+ +++++.++.++++++|.|..++++.+.++...|++++|++.+.++++.+|.+..+|.+++.++..+|++
T Consensus 623 G~--~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~------- 693 (987)
T PRK09782 623 HN--VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM------- 693 (987)
T ss_pred CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHhcCCCCccHH
Q 023284 212 DSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 212 ~~el~~~~~~i~~~P~nesaW 232 (284)
++++.+++++|.++|++..+-
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhh
Confidence 778999999999999886643
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=5.7e-13 Score=134.82 Aligned_cols=157 Identities=9% Similarity=0.059 Sum_probs=82.9
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|++..++.....++...+..++|+.+++.++...|.+..++...+.++...| +++++++.+.+++..+|++ .++
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~ 739 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK-DYPAAIQAYRKALKRAPSS-QNA 739 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCc-hHH
Confidence 34456655565555555555555555555555555555555555555555555555 3555555555555555544 444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
...+.++...|+ +.+++..+.++++.+|.+..+++..+.++...|++++|++.++++++.+|.+..++++.+.+....
T Consensus 740 ~~l~~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGN--TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 444444444554 555555555555555555555555555555555555555555555555555555555444444443
Q ss_pred C
Q 023284 202 P 202 (284)
Q Consensus 202 ~ 202 (284)
+
T Consensus 818 ~ 818 (899)
T TIGR02917 818 K 818 (899)
T ss_pred C
Confidence 3
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9.6e-14 Score=130.53 Aligned_cols=193 Identities=13% Similarity=0.116 Sum_probs=172.5
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ 119 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~ 119 (284)
..|.+.|.+...+-++.+++...+.+++..+.+.++..+||.+..+++|||++..-++ .+++++.-|++++.++|.|.-
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~-q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ-QYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-HHHHHHHHHHHHhhcChhhhH
Confidence 4577778888888888888888999999999999999999999999999999999998 599999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC------ChHHHHH
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF------NNSAWNQ 193 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~------n~sAW~~ 193 (284)
+...++.++.+.++ +++....++.+.++-|+...+.+.-+-+|..-+.|+.|++.|+++|++.|. |.....+
T Consensus 430 ~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 99999999999988 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
++.++.+-.. -+..+++.+.++|+++|..+-+.--++.+...
T Consensus 508 Ka~l~~qwk~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 508 KALLVLQWKE------DINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred hhHhhhchhh------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 9988766221 14778999999999999999887665554433
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.56 E-value=6.3e-13 Score=121.50 Aligned_cols=152 Identities=9% Similarity=-0.049 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284 64 RSSRSFQLTKEAICLNP---G-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE 139 (284)
Q Consensus 64 ~s~~aL~~~~~~L~lnP---~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee 139 (284)
.++.++..+.++|...| . ...+|+.||.++..+| ..++++..+++++..+|+++.+|+++|.++...|+ ++++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~--~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN--FDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--HHHH
Confidence 35778888889996444 3 3788999999999999 59999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284 140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI 219 (284)
Q Consensus 140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~ 219 (284)
++.++++++++|.+..+|.++|.++...|++++|++.++++++++|.+.....+.. +....++ .+++++.+.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~~~~-------~~~A~~~l~ 189 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY-LAESKLD-------PKQAKENLK 189 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHccCC-------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999973221111 2222233 367888887
Q ss_pred HHHhcCC
Q 023284 220 EAILGNP 226 (284)
Q Consensus 220 ~~i~~~P 226 (284)
+++...+
T Consensus 190 ~~~~~~~ 196 (296)
T PRK11189 190 QRYEKLD 196 (296)
T ss_pred HHHhhCC
Confidence 7665443
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.55 E-value=1.1e-12 Score=132.84 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=149.9
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
.|....++...+.++...+..++|+..+++++..+|++..+|..++.++...| +++++++.+++++..+|.+..+|..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45556677777777777777788999999999999999888988888888888 58889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+.++...|+ +++++.++.++++.+|.+..+|..++.++...|++++|...++++++.+|.+..++..++.+....+++
T Consensus 200 ~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 200 GDLLLSLGN--IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277 (899)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCH
Confidence 888888888 889999999999999999899988888888888888888888888888888888888888777666653
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
++++..+.+++..+|++..++..++.++.
T Consensus 278 -------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 306 (899)
T TIGR02917 278 -------EDARETLQDALKSAPEYLPALLLAGASEY 306 (899)
T ss_pred -------HHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55666666666667666655544444333
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.53 E-value=1.2e-12 Score=136.18 Aligned_cols=186 Identities=8% Similarity=-0.047 Sum_probs=146.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
..++.++|+..+.+++...|. ..+|...+.++...| +.++++.++++++..+|.+..........+...|+ +++++
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~G-d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAG-NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--PELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 344455666666665554333 334555566666666 57888888888888888887666544444445588 99999
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
..+.++++++|. ..+|...+.++.++|++++|+.++.++++.+|.|..++++.+.++...++. +++++.+.+
T Consensus 597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-------eeAi~~l~~ 668 (987)
T PRK09782 597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-------AQSREMLER 668 (987)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHH
Confidence 999999999995 999999999999999999999999999999999999999999999998874 788999999
Q ss_pred HHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 221 AILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 221 ~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
+++++|++..+|+.+..++...++ .+++...+-++++-
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd----~~eA~~~l~~Al~l 706 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD----MAATQHYARLVIDD 706 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhc
Confidence 999999999999998888877654 45666666666443
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.52 E-value=3.4e-12 Score=119.54 Aligned_cols=219 Identities=11% Similarity=0.029 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT-----VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ 119 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~-----aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~ 119 (284)
+|....++.....++.+.+..++|++.+..++...|.+.. .+...+.++...+ ++++++..+++++..+|.+..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 215 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAARALLKKALAADPQCVR 215 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhHCcCCHH
Confidence 4444445555555555555556666666666666555421 2333444444445 466666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
++...+.++...|+ ++++++.++++++.+|.+. .++...+.++...|++++|+..++++++.+|++..+ ...+.++
T Consensus 216 ~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence 66666666666666 6666666666666666653 345555666666666666777777766666655433 5555555
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC--CccCCCChhhHHHHHhhhhccccccccccCCCC
Q 023284 199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD--TESWINDPRMLLSVFESFEYQKQLCFCSEHTFR 275 (284)
Q Consensus 199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
.+.++ +++++..+.+++..+|++......+...+... ++.-...+.+-.-..+.+.++.++. |+..-|.
T Consensus 293 ~~~g~-------~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~-c~~cg~~ 363 (389)
T PRK11788 293 EEQEG-------PEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR-CRNCGFT 363 (389)
T ss_pred HHhCC-------HHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE-CCCCCCC
Confidence 55555 47788999999999999876554444444222 2222223333334444567777765 7655443
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.52 E-value=1.3e-12 Score=139.04 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=113.5
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH--HH------------HHHHHHHHHhhhCHHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT--VW------------HFRRQIIETLHTDLQDELAFV 107 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~--aW------------~~R~~~L~~l~~~~~~eL~~~ 107 (284)
+..+|++.+++...+.++...+..++|+.+++++++++|++.. .| ..++.++...| ++++++..+
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g-~~~eA~~~~ 374 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN-NLAQAERLY 374 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 4456666666666666666666666666666666666666532 12 12233334444 466666666
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH-----------------------
Q 023284 108 GRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL----------------------- 164 (284)
Q Consensus 108 ~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl----------------------- 164 (284)
++++..+|.+..++...+.++...|+ ++++++.++++++++|.|..++...+.++
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 66666677666666666666666666 67777777777777777666654443332
Q ss_pred -------------------HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284 165 -------------------QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN 225 (284)
Q Consensus 165 -------------------~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~ 225 (284)
...|++++|+++++++++++|++..++..++.++...+++ ++++..+++++..+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~-------~~A~~~l~~al~~~ 525 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR-------SQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcC
Confidence 1235566667777777777777666666666666666653 56677777777777
Q ss_pred CCCccHHH
Q 023284 226 PENESPWR 233 (284)
Q Consensus 226 P~nesaW~ 233 (284)
|++..+++
T Consensus 526 P~~~~~~~ 533 (1157)
T PRK11447 526 PNDPEQVY 533 (1157)
T ss_pred CCCHHHHH
Confidence 77776663
No 31
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=7.6e-13 Score=126.58 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=158.9
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHH-------------
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF------------- 106 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~------------- 106 (284)
++|.-+|++.+||...+.+-...+....|+..+.++++++|+|-+|....+.....-|. =.+|+++
T Consensus 310 AAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~-q~~Al~~L~~Wi~~~p~y~~ 388 (579)
T KOG1125|consen 310 AAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL-QNQALKMLDKWIRNKPKYVH 388 (579)
T ss_pred HHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCccchh
Confidence 56778999999999999999999998999999999999999999888776655443331 1233333
Q ss_pred ----------------------------HHHHHHhCC--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284 107 ----------------------------VGRIAKSNS--KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA 156 (284)
Q Consensus 107 ----------------------------~~~~l~~~p--kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A 156 (284)
|-.+...+| .++.+-.-.|.++.-.|. ++++++|++.||..+|.|+..
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--fdraiDcf~~AL~v~Pnd~~l 466 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--FDRAVDCFEAALQVKPNDYLL 466 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--HHHHHHHHHHHHhcCCchHHH
Confidence 344444444 455555555555555555 999999999999999999999
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC----C----
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE----N---- 228 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~----n---- 228 (284)
|+..|..+..-.+.++|++.|.+++++-|+...++++.|....++|.| ++++.++..+|.+.++ +
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-------kEA~~hlL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-------KEAVKHLLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-------HHHHHHHHHHHHhhhcccccccCCc
Confidence 999999999999999999999999999999999999999999999874 8899999999987776 2
Q ss_pred --ccHHHHHHHHHccCCc
Q 023284 229 --ESPWRYLRGLYKDDTE 244 (284)
Q Consensus 229 --esaW~y~~~ll~~~~~ 244 (284)
+.+|.++|..+..+++
T Consensus 540 ~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 540 ASENIWQTLRLALSAMNR 557 (579)
T ss_pred chHHHHHHHHHHHHHcCC
Confidence 3499999977776654
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=5e-12 Score=134.70 Aligned_cols=197 Identities=11% Similarity=-0.022 Sum_probs=158.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH--HH------------
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ--LW------------ 121 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~--aW------------ 121 (284)
+..+...+..++|+..+.++|+++|++..++...+.++...| ++++++.++++++..+|++.. .|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 344445667789999999999999999999999999999999 699999999999999998763 23
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
..++.++...|+ +++++..+.++++++|.+..++...+.++...|++++|+++++++++++|.|..++...+.++...
T Consensus 355 ~~~g~~~~~~g~--~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANN--LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 223455566777 999999999999999999999999999999999999999999999999999999998777665321
Q ss_pred CCCch------------------------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc
Q 023284 202 PLLGG------------------------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES 245 (284)
Q Consensus 202 ~~~~~------------------------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~ 245 (284)
..++ ...-++++++.++++++++|++..++..+..++...++
T Consensus 433 -~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~- 510 (1157)
T PRK11447 433 -SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ- 510 (1157)
T ss_pred -CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 0000 00125788999999999999998888777777766543
Q ss_pred CCCChhhHHHHHhhh
Q 023284 246 WINDPRMLLSVFESF 260 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~ 260 (284)
..+++..+.+++
T Consensus 511 ---~~~A~~~l~~al 522 (1157)
T PRK11447 511 ---RSQADALMRRLA 522 (1157)
T ss_pred ---HHHHHHHHHHHH
Confidence 445555555443
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.1e-11 Score=105.54 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=151.0
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC--CCChH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN--SKNYQ 119 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~--pkn~~ 119 (284)
+...|+...++...+.+....+..++|++.+.+++..+|.+..++...+.++...| ++++++..+++++... |....
T Consensus 58 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 58 LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhccccccchH
Confidence 45678888888888888888888899999999999999999999999999999999 6999999999999853 67788
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
+|...+.++...|+ ++++...+.++++.+|.+..+|...+.++...|++++|+.++++++...|.+...+...+.+..
T Consensus 137 ~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 137 SLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR 214 (234)
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999988888887777766
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284 200 RSPLLGGLIAMRDSEVNFTIEAILGN 225 (284)
Q Consensus 200 ~l~~~~~~~~~~~~el~~~~~~i~~~ 225 (284)
..+.. +++..+...+....
T Consensus 215 ~~~~~-------~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 215 ALGDV-------AAAQRYGAQLQKLF 233 (234)
T ss_pred HHhhH-------HHHHHHHHHHHhhC
Confidence 66653 44555555554443
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.6e-12 Score=120.07 Aligned_cols=199 Identities=15% Similarity=0.028 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE 129 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~ 129 (284)
.+..+++..-.-.+.+-.|-..++.+|.+.|.+...+..|+.++.... +-++-.++|+++..+||.|..+++|||.+..
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 344455544444455678999999999999999999888888888777 4678889999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhh
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIA 209 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~ 209 (284)
-+++ ++++++-|++++++||.|.-+...++.++.+.+.+++.+..++.+++..|+-...+++-+.+|..-+.
T Consensus 406 lL~q--~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq------ 477 (606)
T KOG0547|consen 406 LLQQ--YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ------ 477 (606)
T ss_pred HHHH--HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh------
Confidence 9998 99999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred hHHHHHHHHHHHHhcCCC------CccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 210 MRDSEVNFTIEAILGNPE------NESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 210 ~~~~el~~~~~~i~~~P~------nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
++.+++.|+++|++.|. +..+.-+...++..-+ .+...+..-+.++++
T Consensus 478 -Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk---~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 478 -FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK---EDINQAENLLRKAIE 531 (606)
T ss_pred -HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh---hhHHHHHHHHHHHHc
Confidence 47799999999999999 7777666555544422 222334445555543
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-11 Score=115.85 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.-++++.+|.+++++||+...||.--|-=.-.+.+ -..|+++|++|++++|++|.||+..|..+.-++...-||-++.
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 46899999999999999999999999988888887 8899999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHh
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFE 258 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 258 (284)
++++.-|.|...|.-.|.+..++++. ++|+.|+.+++...--+.++..+++-+.+.++ +++++..++.+
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~-------~eAiKCykrai~~~dte~~~l~~LakLye~l~----d~~eAa~~yek 491 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRL-------EEAIKCYKRAILLGDTEGSALVRLAKLYEELK----DLNEAAQYYEK 491 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccH-------HHHHHHHHHHHhccccchHHHHHHHHHHHHHH----hHHHHHHHHHH
Confidence 99999999999999999999999884 88999999999887777788888888877653 45666666655
Q ss_pred hhh
Q 023284 259 SFE 261 (284)
Q Consensus 259 ~~~ 261 (284)
-++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 544
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.4e-12 Score=117.76 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
..+++|+.+|.++|++||+...||--.|.=...+. +...|+.++++++.++|++|.||+.-|..+..++- +.-+|-+
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK-Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--h~YaLyY 420 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK-NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--HFYALYY 420 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc-ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--hHHHHHH
Confidence 44689999999999999999999999999888877 57899999999999999999999999999999987 8899999
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
+.+|+++-|.+...|.-.|.++.++++.++|+.||.+++...--+.+|+...+.+..+++.. +++..++.+-+
T Consensus 421 fqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~-------~eAa~~yek~v 493 (559)
T KOG1155|consen 421 FQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL-------NEAAQYYEKYV 493 (559)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH-------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999998875 44555555555
Q ss_pred h
Q 023284 223 L 223 (284)
Q Consensus 223 ~ 223 (284)
+
T Consensus 494 ~ 494 (559)
T KOG1155|consen 494 E 494 (559)
T ss_pred H
Confidence 4
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=1e-11 Score=107.27 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCCCHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA-EKLGTGAVNKELQFT 143 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll-~~l~~~~~~eel~~~ 143 (284)
.++++..+.++|..+|++.++|...|.++..+| ++++++.++++++..+|++..++...+.++ ...|+....++.+.+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g-~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN-DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 368899999999999999999999999999999 699999999999999999999999999876 566653358999999
Q ss_pred HHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 144 KKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 144 ~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
++++++||+|..+++..+......|++++|+.+++++++.+|-+.+
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999999999999999999999999999999999988664
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=7.2e-11 Score=110.56 Aligned_cols=194 Identities=12% Similarity=0.039 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH-----HHHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ-----LWHHRR 125 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-----aW~hR~ 125 (284)
++...+.++...+..++|+.++.+++..+|.+..++..++.++...| +++++++.+++++..+|.+.. .+...+
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK-DWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34444555556666678888888888888888888888888877777 488888888888887776643 334455
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhcCCCC
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTRSPLL 204 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~l~~~ 204 (284)
.++...|+ +++++..++++++.+|.+..++...+.++...|++++|++.+.++++.+|.+. .++...+.++...++
T Consensus 188 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~- 264 (389)
T PRK11788 188 QQALARGD--LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD- 264 (389)
T ss_pred HHHHhCCC--HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-
Confidence 55666677 88888888888888888888888888888888888888888888888888764 455666666666666
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhh
Q 023284 205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFES 259 (284)
Q Consensus 205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 259 (284)
+++++..+.+++..+|+.+.. ..+..++.+.++ ...+...+.++
T Consensus 265 ------~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~----~~~A~~~l~~~ 308 (389)
T PRK11788 265 ------EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEG----PEAAQALLREQ 308 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCC----HHHHHHHHHHH
Confidence 367788888888888987554 455554444332 33444444444
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=1.5e-11 Score=98.49 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=115.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
+.+.+++..+|++..+-..++.++...| ++++++..+++++..+|.+..+|..++.++...|+ +.+++..++++++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQG-RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 4678899999999999999999999888 59999999999999999999999999999999999 99999999999999
Q ss_pred CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
+|.+...|++++.++...|++++|+..++++++.+|.+...+-.+..+
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 999999999999999999999999999999999999998876555443
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=5.3e-11 Score=119.93 Aligned_cols=155 Identities=8% Similarity=-0.043 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM 146 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a 146 (284)
++|.-......-.|.+..+....+.+..++|+ +++++..++.+++..|++.+|+.+++.+|.+.++ +++++..++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--~eeA~~~~~~~ 146 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--IEAGRAEIELY 146 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 44444444556689999999999999999994 9999999999999999999999999999999999 99999999999
Q ss_pred HHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 147 LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 147 L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
+..+|.|..+-+.++.++.++|++++|+++|++++..+|.+..+|..++.+|+..|+. +++...|.++|...-
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-------~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-------WRARDVLQAGLDAIG 219 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999985 667788888887655
Q ss_pred CCccH
Q 023284 227 ENESP 231 (284)
Q Consensus 227 ~nesa 231 (284)
.-.-.
T Consensus 220 ~~~~~ 224 (694)
T PRK15179 220 DGARK 224 (694)
T ss_pred cchHH
Confidence 54444
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=3e-11 Score=121.70 Aligned_cols=144 Identities=8% Similarity=-0.052 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284 48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127 (284)
Q Consensus 48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l 127 (284)
..+++-....+....++.++|+..++.++++.|++..|+.++..+|..+++ +++++..+++++..+|+++.+-++++.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 366777778888889999999999999999999999999999999999995 9999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
+.++|+ +++++++|++++..+|.+..+|..++.++...|+.++|...|.++|+..-.-.-+++.+
T Consensus 164 l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 164 WDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 999999 99999999999999999999999999999999999999999999999987766666555
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=1.1e-10 Score=102.39 Aligned_cols=170 Identities=8% Similarity=-0.055 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---H
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---L 120 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---a 120 (284)
...+++...+..+...+..++|+..+++++..+|.+. .+|+.++.++...| ++++++..+++++..+|++.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3345565566666666667899999999999999876 68899999999999 699999999999999999887 7
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHccCcHHHHH
Q 023284 121 WHHRRWVAEKL--------GTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALGGWEDELD 175 (284)
Q Consensus 121 W~hR~~ll~~l--------~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~~~~eeL~ 175 (284)
|+.+|.+.... |. +++++..+++++..+|.+..++ ...+.+....|++++|+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTA--AREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHhcccccCCHHH--HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99999998775 45 8899999999999999998765 233455667789999999
Q ss_pred HHHHHHhccCCC---hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 176 YCQMLLGEDIFN---NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 176 ~~~~~l~~dp~n---~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
.+.+++...|++ ..||..++.+..+++.+ ++++.+++.+....|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~-------~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLK-------DLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Confidence 999999997764 58999999999999985 667777766655555
No 43
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=4.5e-11 Score=103.21 Aligned_cols=124 Identities=12% Similarity=0.005 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH-HHccC--cHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL-QALGG--WEDELD 175 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl-~~l~~--~~eeL~ 175 (284)
+.++.+..+.+++..+|++..+|...|.++...|+ +++++.+++++++++|+|..++...+.++ ...|. .+++.+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 46889999999999999999999999999999999 99999999999999999999999999976 67777 499999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccH
Q 023284 176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESP 231 (284)
Q Consensus 176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa 231 (284)
.++++++.+|+|..+++..+.+....|++ ++++.++.++++.+|.+.+-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~-------~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY-------AQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999999999984 88999999999999987764
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=8.9e-12 Score=112.47 Aligned_cols=189 Identities=14% Similarity=0.200 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH--------------------------------H
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQI--------------------------------I 93 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~--------------------------------L 93 (284)
|+..+.|..++.+....+..++|+..+++++..++.+.........+ .
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~ 120 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLY 120 (280)
T ss_dssp -----------------------------------------------------------------------------H-H
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence 44445555555555555555666666666666665554444333333 2
Q ss_pred HHhhhCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284 94 ETLHTDLQDELAFVGRIAKSN--SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 94 ~~l~~~~~~eL~~~~~~l~~~--pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
...+ ++++....++++.... |.+...|..++.+..+.|+ .++++.++.++|+++|.|..++...+|++...|+.+
T Consensus 121 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 121 YRLG-DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp HHTT--HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHh-HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 2223 4777777888866544 6888999999999999998 999999999999999999999999999999899998
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
++.+.+..+....|.|...|...+.+...+|+. ++++.++.+++..+|+|......+..++...|+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-------~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-------EEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-------HHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-------ccccccccccccccccccccccccccccccccc
Confidence 888888888888899999999999999888874 789999999999999999988888888887654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=4.2e-11 Score=108.09 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=119.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284 58 VYYSDERSSRSFQLTKEAICLN--PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~ln--P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~ 135 (284)
+....+..+++..+++.+.... |.+..+|..++.+....| +.+++++++++++..+|++..++..-+|++...|+
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-- 195 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-- 195 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH--
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--
Confidence 3444566678888888877666 789999999999999999 58999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG 205 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~ 205 (284)
..++.+.+....+..|.|...|...++++..+|+.++|+.++.+++..+|.|.....+.+.++...|+.+
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 8888899999999999999999999999999999999999999999999999999999999999999863
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=8.8e-11 Score=93.94 Aligned_cols=124 Identities=13% Similarity=0.019 Sum_probs=115.3
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 106 FVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 106 ~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
.+.+++..+|++..+-..++..+...|+ +++++..+.+++..+|.+..+|..++.++...+++++|+.++++++..+|
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5688999999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284 186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238 (284)
Q Consensus 186 ~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l 238 (284)
.+...+.+++.++...++. ++++..++++++++|++...+.+.+.+
T Consensus 83 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEP-------ESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred CChHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhccccchHHHHHHHH
Confidence 9999999999999998874 788999999999999999977666544
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.28 E-value=1e-09 Score=112.52 Aligned_cols=142 Identities=10% Similarity=-0.006 Sum_probs=119.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCH
Q 023284 57 AVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAV 136 (284)
Q Consensus 57 ~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~ 136 (284)
++..-.+..++|++.+.+++..+|....++...+.++...| ++++++.++++++..+|.+..++...+.++...|+ +
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--Y 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--H
Confidence 34444566688888888888888888888888888888888 58888899999999999998888888888888888 8
Q ss_pred HHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 137 NKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 137 ~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
++++..++++++.+|.+.. |...+.++...|+.++|+..++++++.+|++..++..++.++...+
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8899999999999998888 8888888888888889999999999999999888888877765443
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.28 E-value=6.3e-10 Score=114.08 Aligned_cols=173 Identities=10% Similarity=-0.078 Sum_probs=148.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC--------------
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------------- 117 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------------- 117 (284)
..++...+..++|+..+++++..+|.+ ..+......++...+ .+++++..++++...+|..
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g-~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE-NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc-cHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 445555677789999999999999877 345555566666777 5999999999999998743
Q ss_pred -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
..+...++.++...|+ ++++++.+++++..+|.|..+|..++.++...|++++|++.++++++++|+|..++..++.
T Consensus 358 ~~~a~~~~a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 3466778888888898 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284 197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238 (284)
Q Consensus 197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l 238 (284)
+...++++ +++...++++++..|+|+.+-.+.+..
T Consensus 436 ~al~~~~~-------~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEW-------RQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 98888874 778899999999999999987766654
No 49
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4.3e-11 Score=107.15 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
+|++|+..++++|.++|+|+.-+..|..++.+||. ++.|++.|+.+|.+||+...+|...|.++..+|++++|++.|.
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCC
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
++|++||.|.+.|.++..+=.+++.
T Consensus 174 KaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 174 KALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999888666643
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=4.8e-10 Score=107.63 Aligned_cols=188 Identities=11% Similarity=0.039 Sum_probs=139.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
++.+|. -.+|.-+++.+++.+|+|..||...|.+--..+. -..++..+.++++++|+|-.|.--.+..+..-|. -.
T Consensus 295 lm~nG~-L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~--q~ 370 (579)
T KOG1125|consen 295 LMKNGD-LSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTNEGL--QN 370 (579)
T ss_pred HHhcCC-chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh--HH
Confidence 346666 4678889999999999999999999998877774 5688899999999999999998666555444333 33
Q ss_pred HHHHHHHHHHH-----------------------------------------hCc--CChhHHhHHHHHHHHccCcHHHH
Q 023284 138 KELQFTKKMLS-----------------------------------------LDA--KNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 138 eel~~~~~aL~-----------------------------------------~dp--kN~~AW~~r~~vl~~l~~~~eeL 174 (284)
+|+.+++++|. .+| .++..-.-.|.++.-.+.|+.++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 44444444444 444 44444445555555556789999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL 254 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~ 254 (284)
+|++.+|..+|.|++.||-.|..|.+-.+. .+||..|.+++++.|+...+|+.++.-.-.. +.|-+++.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-------~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl----G~ykEA~~ 519 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRS-------EEAISAYNRALQLQPGYVRVRYNLGISCMNL----GAYKEAVK 519 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCccc-------HHHHHHHHHHHhcCCCeeeeehhhhhhhhhh----hhHHHHHH
Confidence 999999999999999999999999887774 7899999999999999999997765433332 23444444
Q ss_pred HHHhhh
Q 023284 255 SVFESF 260 (284)
Q Consensus 255 ~~~~~~ 260 (284)
=+.++|
T Consensus 520 hlL~AL 525 (579)
T KOG1125|consen 520 HLLEAL 525 (579)
T ss_pred HHHHHH
Confidence 444443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.3e-10 Score=107.08 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=156.1
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
.++|.|..||-+|+..+.-.+-.+.|+.++.+|-++-|....-..|.|.=...++ .++-+-.|+..++.+.|.++-+-+
T Consensus 340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~-n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN-NLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCcchhhh
Confidence 3555555555555555554444455555555555555555555555554444444 467777888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHh----CcC---ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSL----DAK---NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~----dpk---N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
.-|.+..+.+. +.+|+..+..++.. .++ =...|++.|-+.++++++++|+.+++++|.+.|.|.++..-.|
T Consensus 419 Elgvvay~~~~--y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 419 ELGVVAYTYEE--YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhheeehHhh--hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 88888887776 89999999988831 221 2245899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCCh-hhHHHHHhhhhccccccccccCCC
Q 023284 196 FVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDP-RMLLSVFESFEYQKQLCFCSEHTF 274 (284)
Q Consensus 196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
++...+|.. +.|++++.++|.++|+|..+=..++..++..+..-+... .-+-|....--+++++.-|++...
T Consensus 497 ~iy~llgnl-------d~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 569 (611)
T KOG1173|consen 497 YIYHLLGNL-------DKAIDHFHKALALKPDNIFISELLKLAIEDSECKSGVDSKDYITCYNDNMYPKKSLLNISRRSL 569 (611)
T ss_pred HHHHHhcCh-------HHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhhhcccccccccchhhhhHHHhhhchhhccCCC
Confidence 998888874 789999999999999998766666666655332222211 122233333445555666665544
Q ss_pred C
Q 023284 275 R 275 (284)
Q Consensus 275 ~ 275 (284)
|
T Consensus 570 ~ 570 (611)
T KOG1173|consen 570 R 570 (611)
T ss_pred C
Confidence 3
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.22 E-value=1.2e-09 Score=111.97 Aligned_cols=194 Identities=11% Similarity=-0.027 Sum_probs=150.1
Q ss_pred cceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284 39 VVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY 118 (284)
Q Consensus 39 ~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~ 118 (284)
+|.....|.+++.-.....+..+.+.+..|++.+.++++.+|.+..+.+--..++...| ..++++..+++++...|.++
T Consensus 24 ~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G-~~~~A~~~~eka~~p~n~~~ 102 (822)
T PRK14574 24 ISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG-RDQEVIDVYERYQSSMNISS 102 (822)
T ss_pred HcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC-CcHHHHHHHHHhccCCCCCH
Confidence 35667788877765555555566777789999999999999999644444444555667 58899999999994444444
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
.+-.-.+.++...|+ +++|++.++++++++|+|..++.....+....+..++|++.+.+++..+|.+... ..+..+.
T Consensus 103 ~~llalA~ly~~~gd--yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 103 RGLASAARAYRNEKR--WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 444333668888898 9999999999999999999999988788888999999999999999999997665 4455555
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
...++. .++++.+++++..+|+++.+..-+...+...+
T Consensus 180 ~~~~~~-------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 180 RATDRN-------YDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HhcchH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 444432 35899999999999999998755555555443
No 53
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.3e-09 Score=99.31 Aligned_cols=203 Identities=11% Similarity=0.026 Sum_probs=148.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
.|+++.++.....+....+..+++...+.++...+|.+ .+....++.++...| +++++++++++++..+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHH
Confidence 58888888888877777777777788888888777755 556777777777777 68999999999999999999888
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 122 HHRRWVAEKLGT--GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 122 ~hR~~ll~~l~~--~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
.. +..+..+|. .........+......+|....+....+.++...|++++|+..++++++++|.+..+++..+.++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 76 555555443 113334444444446777777888888889999999999999999999999999888888898888
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 200 RSPLLGGLIAMRDSEVNFTIEAILGNPENES----PWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nes----aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
..++. +++++++.+++...|.+.. .|..+..++...+ +..+++..+.+.+
T Consensus 160 ~~g~~-------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G----~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRF-------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG----DYEAALAIYDTHI 213 (355)
T ss_pred HcCCH-------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC----CHHHHHHHHHHHh
Confidence 88874 7788888899888876443 2333444443332 2445555555544
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.18 E-value=2.5e-09 Score=93.67 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=132.7
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
.++....+++.++..+...| ++++++..+++++..+|.+. .+|.+.+.++...|+ +++++..++++++.+|++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSG-DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--YAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cccCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCC
Confidence 34567789999999999988 59999999999999999986 688999999999999 9999999999999999999
Q ss_pred h---HHhHHHHHHHHc--------cCcHHHHHHHHHHHhccCCChHHHHHH-----------------HHHHhcCCCCch
Q 023284 155 H---AWSYRQWVLQAL--------GGWEDELDYCQMLLGEDIFNNSAWNQR-----------------YFVVTRSPLLGG 206 (284)
Q Consensus 155 ~---AW~~r~~vl~~l--------~~~~eeL~~~~~~l~~dp~n~sAW~~r-----------------~~ll~~l~~~~~ 206 (284)
. +|+.+|.+.... +.+++|++.+++++..+|.+..++.-. +.+....|+
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~--- 181 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA--- 181 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---
Confidence 8 799999998776 678999999999999999998775322 222222333
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCccCCCChhhHH
Q 023284 207 LIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTESWINDPRMLL 254 (284)
Q Consensus 207 ~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~~~~~~~~~~ 254 (284)
+++++..+.+++...|+++ .+|..++.++...+. +.+++.
T Consensus 182 ----~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~----~~~A~~ 224 (235)
T TIGR03302 182 ----YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL----KDLAQD 224 (235)
T ss_pred ----hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC----HHHHHH
Confidence 4778999999999988764 588777766666543 444554
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.1e-10 Score=105.34 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=161.1
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 023284 14 ERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII 93 (284)
Q Consensus 14 ~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L 93 (284)
++.||..-.....++|+.+..... |.--.+......++...+++++|...+-.++++++.+..+...||.++
T Consensus 142 ~~~~~~~anal~~~~~~~~s~s~~--------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSHSRE--------PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCL 213 (486)
T ss_pred hhhhhHHhhhhhhhhcccccccCC--------chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccc
Confidence 445554444566666766643333 334456666667788889999999999999999999999999999999
Q ss_pred HHhhhCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh----hHH
Q 023284 94 ETLHTDLQDELAFVGRIAKSNSKNY------------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY----HAW 157 (284)
Q Consensus 94 ~~l~~~~~~eL~~~~~~l~~~pkn~------------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~----~AW 157 (284)
.... +...++..++++|..+|... .+|-.+|.-+.+-|. +..+-++|..+|.+||.|. +.+
T Consensus 214 yy~~-~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~--y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 214 YYND-NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN--YRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccc-chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc--hhHHHHHHHHhhcCCccccchhHHHH
Confidence 9888 58899999999999988776 457777777777788 9999999999999999865 678
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ 227 (284)
.+|+.+..++|+..+++..++.++.+||...-|+.-|+.+..-++. ++++++.++++++..-+
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~-------~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK-------WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999988776665 47778888888765554
No 56
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=103.01 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=105.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~ 134 (284)
-+.-..+.+++++|+..|++||+++|.++..+-.|..++.+|| .++.|++-|+.+|.+||....+|...|.++..+|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk- 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK- 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-
Confidence 3555556777899999999999999999999999999999999 59999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
++++++.|.++|++||.|-..|.+..++-.+++.-
T Consensus 165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998888743
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.15 E-value=4.8e-09 Score=104.98 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=124.0
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
++.|+-...++.--.+... +..++|..++.+||+.+|.++.+|+..|.|.+.+| +.++++.|.-.|..++|+++.-|.
T Consensus 134 ~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred ccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHH
Confidence 3444444444333233333 55689999999999999999999999999999999 799999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
+-+-+..++|. +..|.-||.+||+.+|.|..--..|..+++++|....|++.+.+++..+|
T Consensus 212 ~ladls~~~~~--i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 212 RLADLSEQLGN--INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhccc--HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999998 99999999999999999999999999999999999999999999999999
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=5.7e-09 Score=90.61 Aligned_cols=174 Identities=10% Similarity=-0.013 Sum_probs=145.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~ 130 (284)
++-.++.-+...+....|..-++++|+.+|+++.+|..|..+.+.+| ..+.+-+.|++++.++|++-.+.++-||.|=.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G-e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG-ENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-ChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34444444556667789999999999999999999999999999999 58899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284 131 LGTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI 208 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~ 208 (284)
.|+ ++++...+++++. ..+.-...|-+.|+|-.+.|..+.+.+++.++|+.||++..+.--..-.+..-+.+.
T Consensus 116 qg~--~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~--- 190 (250)
T COG3063 116 QGR--PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA--- 190 (250)
T ss_pred CCC--hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch---
Confidence 998 9999999999997 356777899999999999999999999999999999999999888877777667653
Q ss_pred hhHHHHHHHHHHHHhc-CCCCccHHHH
Q 023284 209 AMRDSEVNFTIEAILG-NPENESPWRY 234 (284)
Q Consensus 209 ~~~~~el~~~~~~i~~-~P~nesaW~y 234 (284)
.+-.+++..... .++-+|.|.-
T Consensus 191 ----~Ar~~~~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 191 ----PARLYLERYQQRGGAQAESLLLG 213 (250)
T ss_pred ----HHHHHHHHHHhcccccHHHHHHH
Confidence 334444444433 3444567643
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.13 E-value=1.2e-09 Score=102.52 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
++++++.+++++|..+|.+..+|.+|+.++..+|+ +++|+..++++++++|.+..+|+.+|.++..+|++++|+..++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45566666666666666666666666666655555 6666666666666666666666666666666666666666666
Q ss_pred HHHhccCCChHHHHHHHHH
Q 023284 179 MLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~l 197 (284)
++++++|+|..+....+.+
T Consensus 95 ~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHhCCCCHHHHHHHHHH
Confidence 6666666665555544444
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=6.3e-09 Score=94.99 Aligned_cols=168 Identities=14% Similarity=0.157 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
.+||..|..++..+|++|.+.+.|+.+...+|+ -..+|.-++++|+.-|..+.|-..||.++.+.|. ++.+.+.+++
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk-sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--le~A~~DF~~ 131 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK-SKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--LEQAEADFDQ 131 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC-CccchhhHHHHHhcCccHHHHHHHhchhhhhccc--HHHHHHHHHH
Confidence 467777777777777777777777777777774 4566666777777777777777777777777776 7777777777
Q ss_pred HHHhCcCCh-------------hHHhHHHHHHHHc--cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch----
Q 023284 146 MLSLDAKNY-------------HAWSYRQWVLQAL--GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG---- 206 (284)
Q Consensus 146 aL~~dpkN~-------------~AW~~r~~vl~~l--~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~---- 206 (284)
+|.-+|.|- .-|.-+..+.... |+...++++++..|++-|=+.+...+|.-++-.-+....
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 777777442 3566666665554 356677777777777777777777666655443321100
Q ss_pred -----------------hhhh------HHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284 207 -----------------LIAM------RDSEVNFTIEAILGNPENESPWRYLR 236 (284)
Q Consensus 207 -----------------~~~~------~~~el~~~~~~i~~~P~nesaW~y~~ 236 (284)
...+ .+..|.-+.+-|+++|++...+-+.+
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence 0000 25567778888999999988765544
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=6e-09 Score=90.45 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
++..+..-++++|+.+|++|.+|.-|..+++.+|. .+.+-+.|.++++++|+|-...++-||.|...|++++++..++
T Consensus 50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~ 127 (250)
T COG3063 50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFE 127 (250)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHH
Confidence 68899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhc--cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 179 MLLGE--DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 179 ~~l~~--dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
+++.. .+.-...|-+.|.+-.+.|.. +.+-+++.++|+++|++..+-
T Consensus 128 ~Al~~P~Y~~~s~t~eN~G~Cal~~gq~-------~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 128 RALADPAYGEPSDTLENLGLCALKAGQF-------DQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred HHHhCCCCCCcchhhhhhHHHHhhcCCc-------hhHHHHHHHHHHhCcCCChHH
Confidence 99985 466778899999998888875 456778899999999998754
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.1e-09 Score=101.42 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=123.7
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284 59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK 138 (284)
Q Consensus 59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e 138 (284)
+.+...-++++...+...-++|+-.+.-..+|......| ++.+|+..|+++|..+|++..++.+|+.++.+||. +.+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g-dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~--~~~ 410 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG-DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE--YPE 410 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh--HHH
Confidence 333333467888888888889998888888888888888 79999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 139 ELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
+|..+++++++||.+.-+|..+|.++..+.+|++++++|.++++.||++..+--..+-++..
T Consensus 411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998776555555553
No 63
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.3e-08 Score=87.98 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=152.7
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
.+-|+....+...--....-++..-|..++..+-...|+++-+=-.++..|+..| .+++|++.++.+|..||.|..+.-
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-NYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-chhhHHHHHHHHhccCcchhHHHH
Confidence 3455555555432222223345578999999988888999999999999999999 599999999999999999999988
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
.|-.+++..|+ -.+++.-++.-|+.-+.+..||....-++-..+.|++|.-|+++++-+.|.|+-..--.+-++...|
T Consensus 125 RKlAilka~GK--~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGK--NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCC--cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 77888888998 6799999999999999999999999999999999999999999999999999876655566766665
Q ss_pred CCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284 203 LLGGLIAMRDSEVNFTIEAILGNPENESPWR 233 (284)
Q Consensus 203 ~~~~~~~~~~~el~~~~~~i~~~P~nesaW~ 233 (284)
.. .-++-+..++.++++++|.|--+|+
T Consensus 203 g~----eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 203 GA----ENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred hH----HHHHHHHHHHHHHHHhChHhHHHHH
Confidence 43 1246678899999999998877774
No 64
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.4e-09 Score=99.75 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=134.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
.+.+.+..+.++..+.++|...-. ..++..+. ..++++.-.+...-++|+-...--.+|.-..+.|+ +.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk-~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--y~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLK-EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--YP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHH-HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--HH
Confidence 333445556677777775543222 56777777 58899999999999999998888889999999999 99
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNF 217 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~ 217 (284)
+|+..|+++|.++|.|.-++++|+.++-+++.+..+|..+++.|++||.+.-+|..+|.++..+.++ +++++.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-------dkAlea 448 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY-------DKALEA 448 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888774 788999
Q ss_pred HHHHHhcCCCCccH
Q 023284 218 TIEAILGNPENESP 231 (284)
Q Consensus 218 ~~~~i~~~P~nesa 231 (284)
|.++++.+|++..+
T Consensus 449 y~eale~dp~~~e~ 462 (539)
T KOG0548|consen 449 YQEALELDPSNAEA 462 (539)
T ss_pred HHHHHhcCchhHHH
Confidence 99999999999863
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.04 E-value=5.6e-09 Score=97.97 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=98.0
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
..+..++|+++++++|.++|.+..+|..|+.++..+| ++++++..+++++.++|.+..+|+.+|.++..+|+ +++|+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG-NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--YQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--HHHHH
Confidence 4456689999999999999999999999999999999 69999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
..++++++++|.|..+....+.+...+.
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999888877776663
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=2.1e-08 Score=92.86 Aligned_cols=168 Identities=10% Similarity=0.060 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT---DLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~---~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
.+.......+....+..++|++++++++..+|.+..++.. +..+..++. ......+.+......+|....+....+
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 3444455555666677799999999999999999999886 444444441 233344444444467777778888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh----HHHHHHHHHHhcC
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN----SAWNQRYFVVTRS 201 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~----sAW~~r~~ll~~l 201 (284)
.++...|+ +++++..++++++++|++..++...+.++...|++++++.++++++...|.+. ..|.+.+.++...
T Consensus 122 ~~~~~~G~--~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQ--YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCC--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 99999999 99999999999999999999999999999999999999999999999987543 3466778888778
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
|++ ++++..+++++...|
T Consensus 200 G~~-------~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDY-------EAALAIYDTHIAPSA 217 (355)
T ss_pred CCH-------HHHHHHHHHHhcccc
Confidence 874 778888988887776
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7.1e-09 Score=104.53 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=148.7
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-------------------------
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL------------------------- 96 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l------------------------- 96 (284)
+...|.|.+++-..+..........+|...+..++..+..+..+|..-|.+....
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 4466777777666654433344446788888888888888888888888433221
Q ss_pred ----h------------------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 97 ----H------------------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 97 ----~------------------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
| ..+++|+.+|.++|..+|||..|=+.-|.+|..-|+ +.+|++.+.++.+--.++.
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~ 680 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFE 680 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCC
Confidence 1 125678888888888888888888888888888877 8888888888887777788
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccC--CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDI--FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp--~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
.+|.+.+.|+...|.|-.|++.|+..++..- .+....++.+-++..-+. +.++.+....++.+.|.|.++-
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-------~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-------LQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHhCCccchHH
Confidence 8888888888888888888888888887653 344667777776665554 5788999999999999999988
Q ss_pred HHHHHHHccCCccCCCCh
Q 023284 233 RYLRGLYKDDTESWINDP 250 (284)
Q Consensus 233 ~y~~~ll~~~~~~~~~~~ 250 (284)
+.+..++.+..+++-..|
T Consensus 754 FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 754 FNLALVLKKLAESILRLE 771 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 888888887666554433
No 68
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=1.9e-08 Score=100.83 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=116.0
Q ss_pred HHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284 92 IIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 92 ~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
.+...| ++++|.+.+..+|..+|+++.+|..-|.|.++.|+ .++++.+.-.|-.++|+++.-|.+.+-...++|.+.
T Consensus 148 ~lfarg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 344456 69999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
.|.-||.++|..+|.|.-.-..|..++.++|.. .+|++.+.+++...|
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-------~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDL-------KRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-------HHHHHHHHHHHhhCC
Confidence 999999999999999988878888899988874 778889999999988
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=4.2e-08 Score=89.68 Aligned_cols=158 Identities=18% Similarity=0.120 Sum_probs=129.4
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS 158 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~ 158 (284)
+|.+.+-..-.|.-+..-|. +.++|.-|..++..||+||++.+.|+.++..+|+ -.-++..++++|++-|..+-|=.
T Consensus 34 ~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--sk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--SKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--CccchhhHHHHHhcCccHHHHHH
Confidence 45556666666777777774 8899999999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhccCCChHH-------------HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284 159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSA-------------WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN 225 (284)
Q Consensus 159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA-------------W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~ 225 (284)
.||.++.+.|.++.|..-++++|..+|+|.+. |..+..++.-.+.-+ +..++++++++|++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD-----~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD-----CQNAIEMITHLLEIQ 185 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHhcC
Confidence 99999999999999999999999999987754 444444444332211 356788999999999
Q ss_pred CCCccHHHHHHHHHccCCc
Q 023284 226 PENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 226 P~nesaW~y~~~ll~~~~~ 244 (284)
|=+.+...++.-++...++
T Consensus 186 ~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGE 204 (504)
T ss_pred cchhHHHHHHHHHHHhcCc
Confidence 9999988887766665444
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=3.7e-08 Score=97.43 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE 129 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~ 129 (284)
..|.....+....+..++|.-|..++=++.|-...+|+-+|.++...| ..+++..+|..++.+||.++.+-.-.+.++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~-~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG-QLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH-hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455566666667777789999999999999999999999999999999 4899999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
..|.....+.-.+...++++||.|..||++.|-++++.|+.+.|-+||+.++++++++.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99986666666799999999999999999999999999999999999999999998875
No 71
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=4.5e-09 Score=74.50 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhccC
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGEDI 185 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~dp 185 (284)
+..+|..+|.++...|+ +++++.++++++++||.+..+|+.+|.++..+| ++++|+++++++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~--~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD--YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666666 666666666666666666666666666666666 56666666666666666
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=1e-07 Score=94.30 Aligned_cols=212 Identities=14% Similarity=0.196 Sum_probs=156.7
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL-NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l-nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
++.|.++.+..|...-+.-...-+.|++...++|.+ +.++..+|+....++..-+ ++.+++..++.++...|+|+..-
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k-r~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK-RLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHhhhhhhhc
Confidence 345555555554443333334446789999999999 4467788988888888877 48899999999999999877653
Q ss_pred HHHHHHHHHhCC--------------------------------------------------------------------
Q 023284 122 HHRRWVAEKLGT-------------------------------------------------------------------- 133 (284)
Q Consensus 122 ~hR~~ll~~l~~-------------------------------------------------------------------- 133 (284)
.-|.-|-..+++
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 332211111100
Q ss_pred ---------------------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 134 ---------------------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 134 ---------------------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
...+++..|+..+-.++|-....|+-+|.++...|.+++|.++|..+
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01356667888899999999999999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhh-
Q 023284 181 LGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFES- 259 (284)
Q Consensus 181 l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~- 259 (284)
+.+||++.-...-.+-++...|.-. +.+.-.+...+++++|.|..+|+|++.++.+.|. ...+.-||-.+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~-----la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd----~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPR-----LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD----SKQAAECFQAAL 781 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc----hHHHHHHHHHHH
Confidence 9999999999999999999988532 1212236678999999999999999999998753 34566677666
Q ss_pred -hhccc
Q 023284 260 -FEYQK 264 (284)
Q Consensus 260 -~~~~~ 264 (284)
|+.++
T Consensus 782 qLe~S~ 787 (799)
T KOG4162|consen 782 QLEESN 787 (799)
T ss_pred hhccCC
Confidence 45544
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.5e-08 Score=92.21 Aligned_cols=174 Identities=13% Similarity=0.056 Sum_probs=103.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
..+.+.+|-.++.++-.++|....+|..-|..+..-+ .-+.++.++..|.+.-|++...-.+-|.=...++. +.-+-
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~-EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n--~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG-EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN--LKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc-hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc--HHHHH
Confidence 3344444555555555555555555554444444433 24445555555555555554444444444444444 55555
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc--CCCh-----HHHHHHHHHHhcCCCCchhhhhHHH
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED--IFNN-----SAWNQRYFVVTRSPLLGGLIAMRDS 213 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d--p~n~-----sAW~~r~~ll~~l~~~~~~~~~~~~ 213 (284)
.|+..|+.+.|.+.-.-+..|-+..+.+.|.+|+.++..+++.- ..+. ..|++.|.+..++++ +++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-------~~e 473 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-------YEE 473 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-------HHH
Confidence 66666666666666666666666666666677777777666321 1122 236677777777666 488
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 214 EVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 214 el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
+|.+++++|.+.|.+.++..-++.+....++
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 9999999999999999877666655554443
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.86 E-value=6.3e-08 Score=80.03 Aligned_cols=107 Identities=3% Similarity=-0.082 Sum_probs=87.4
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284 75 AICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN 153 (284)
Q Consensus 75 ~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN 153 (284)
+..+. ++.-+.-+-.+-.+...| ++++|..+|+.+...+|.++.-|.+.|.+.+.+|+ +.+|+++|.+++.++|+|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G-~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVK-EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--WGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence 33455 666666777777777777 58888888888888888888888888888888888 888888888888888888
Q ss_pred hhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 154 YHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
+.+..|.|-++-.+|+.+.|.+++..+|..-
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888765
No 75
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.83 E-value=4e-08 Score=82.53 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
+...+++.++.++...|+ +++++.+++++++++|+. ..+|.+.+.++..+|++++|+.++.+++..+|.+..++.
T Consensus 33 ~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGE--YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 444445555555555555 666666666666554432 345666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCCC-------chhhhhHHHHHHHHHHHHhcCCCC
Q 023284 193 QRYFVVTRSPLL-------GGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 193 ~r~~ll~~l~~~-------~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
.++.++..++.. ..+...++++++++.+++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 666665555432 112233677899999999999998
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=2.4e-08 Score=70.72 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=60.2
Q ss_pred CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc
Q 023284 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG-TGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~-~~~~~eel~~~~~aL~~dp 151 (284)
+++.+|..+|.++...+ ++++++.++++++..+|++..+|..+|.++..+| + +.+++.++++++++||
T Consensus 1 e~a~~~~~~g~~~~~~~-~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~--~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQG-DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD--YEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHcCc
Confidence 35678899999999888 5899999999999999999999999999999988 7 8899999999999988
No 77
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.83 E-value=9.6e-08 Score=68.39 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284 85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl 164 (284)
+|+.++.++...| ++++++..+++++...|++..+|...+.++...++ +++++.++.+++...|.+..+|...+.++
T Consensus 2 ~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLG-DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--YEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHh-cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 4556666666666 46777777777777777777777777777777766 77777777777777777777777777777
Q ss_pred HHccCcHHHHHHHHHHHhccC
Q 023284 165 QALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 165 ~~l~~~~eeL~~~~~~l~~dp 185 (284)
...++++++...+.++++.+|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 777777777777777777665
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=1.2e-07 Score=79.60 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=85.1
Q ss_pred CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
....+++.++.++...| ++++++.++++++...|+. ..+|.+.+.++..+|+ +++++.++.++++.+|++..++
T Consensus 33 ~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADG-EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--HDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHH
Confidence 44556677777777777 5888888888888877653 4678888888888888 8888888888888888888888
Q ss_pred hHHHHHHHHccC--------------cHHHHHHHHHHHhccCCCh
Q 023284 158 SYRQWVLQALGG--------------WEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 158 ~~r~~vl~~l~~--------------~~eeL~~~~~~l~~dp~n~ 188 (284)
..++.++..++. ++++++++.+++..+|.|.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 888888887775 5788899999999999984
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=2.4e-08 Score=100.93 Aligned_cols=172 Identities=9% Similarity=0.067 Sum_probs=116.6
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh--
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY-- 118 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~-- 118 (284)
++.+.|.+..+|.+.|.++..--.--+|..+|++|..++|.++++|-.-....-... +++.+...+-.+.++.|+..
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhhchHHHHH
Confidence 344555555555555555543332245666666666666666666665555555544 45555555555555555433
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
..|.+||...-+-++ +..++.-+..++..||+++.+|...|-++..-|++..|+..++++..++|.+--+-+....+.
T Consensus 563 ~nW~~rG~yyLea~n--~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHN--LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred hhhhhccccccCccc--hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 345555544444444 788999999999999999999999999999999999999999999999999877777767777
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHH
Q 023284 199 TRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 199 ~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
..+|.+ +++++.....|
T Consensus 641 cd~GkY-------keald~l~~ii 657 (1238)
T KOG1127|consen 641 CDNGKY-------KEALDALGLII 657 (1238)
T ss_pred HHhhhH-------HHHHHHHHHHH
Confidence 677775 44454444444
No 80
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.7e-07 Score=81.26 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
|...-+....+..+...+..++|+++++.+|.-+|.|..+.-.|-.+++..|+.. ++++-+..-+...+.+..||..-.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-~aIk~ln~YL~~F~~D~EAW~eLa 161 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-EAIKELNEYLDKFMNDQEAWHELA 161 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4444555666777778888899999999999999999988886667888889765 899999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC---cHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG---WEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~---~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
.++...|. +.+|.=|++.++-+.|-|+-.....+-++...|. .+-+.++|.++++++|.|..+|+...
T Consensus 162 eiY~~~~~--f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 162 EIYLSEGD--FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHhHhH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 99999998 9999999999999999999988888888887774 57889999999999999999998654
No 81
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=1.1e-07 Score=79.34 Aligned_cols=125 Identities=17% Similarity=0.069 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHH
Q 023284 103 ELAFVGRIAKSNSKN--YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYC 177 (284)
Q Consensus 103 eL~~~~~~l~~~pkn--~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~ 177 (284)
....+..++..+++. ..+|+..+.++...|+ +++++..+.+++.+.|+. ..+|.+.+.++...|++++|+.++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333444444444444 5556666777777777 777777777777776553 247777777777777788888888
Q ss_pred HHHHhccCCChHHHHHHHHHHh-------cCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284 178 QMLLGEDIFNNSAWNQRYFVVT-------RSPLLGGLIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 178 ~~~l~~dp~n~sAW~~r~~ll~-------~l~~~~~~~~~~~~el~~~~~~i~~~P~ne 229 (284)
.+++.++|.+..++.+++.++. .++++......+++++..+.+++..+|.+.
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888888877777777777777 344443333446778888999999999754
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.78 E-value=1.9e-07 Score=77.25 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=95.8
Q ss_pred cC-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 44 YK-PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 44 ~~-p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
++ ++.-+....++..+...++.++|..+|..+..++|.+...|+..|.+.+.+| ++++|+.+|.+++.++|+++.+..
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g-~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK-HWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCchHHH
Confidence 55 6666777777777777788899999999999999999999999999999999 699999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLD 150 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~d 150 (284)
|-|.++..+|+ .+.+.++++.++..-
T Consensus 108 ~ag~c~L~lG~--~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDN--VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence 99999999999 999999999999865
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-06 Score=82.28 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=130.3
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
++|...++|..++.+++..+..++.-.+...++.+.-.+..-|+.-+.++..-+ +++.+|.+.+++|..+|++.++..-
T Consensus 261 ~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K-~~~rAL~~~eK~I~~~~r~~~alil 339 (564)
T KOG1174|consen 261 ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK-KFERALNFVEKCIDSEPRNHEALIL 339 (564)
T ss_pred CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh-hHHHHHHHHHHHhccCcccchHHHh
Confidence 455555556555555555544445555555555555455555555555554444 5889999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh---HH--------------HHHHHHccC-----------------
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS---YR--------------QWVLQALGG----------------- 169 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~---~r--------------~~vl~~l~~----------------- 169 (284)
+|.+|..+++ .++++-.|..+..+-|..-.++- |- .|++..++.
T Consensus 340 KG~lL~~~~R--~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 340 KGRLLIALER--HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred ccHHHHhccc--hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc
Confidence 9999999999 88888888888888876554432 21 122222221
Q ss_pred --cHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch--------------------------hhhhHHHHHHHHHHH
Q 023284 170 --WEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG--------------------------LIAMRDSEVNFTIEA 221 (284)
Q Consensus 170 --~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~--------------------------~~~~~~~el~~~~~~ 221 (284)
-++|-.++++.+.++|...-|-+-+.-++..-|++.+ +...+++++++|..+
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2688889999999999988888877776655444422 123478999999999
Q ss_pred HhcCCCCccHHH
Q 023284 222 ILGNPENESPWR 233 (284)
Q Consensus 222 i~~~P~nesaW~ 233 (284)
|+++|+|+.+--
T Consensus 498 Lr~dP~~~~sl~ 509 (564)
T KOG1174|consen 498 LRQDPKSKRTLR 509 (564)
T ss_pred HhcCccchHHHH
Confidence 999999998753
No 84
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.76 E-value=5.2e-07 Score=92.91 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=125.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR--RQIIETLHTDLQDELAFVGRIAKSNSKNYQ 119 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R--~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~ 119 (284)
++.+|++..+..-...++...+..++|+..+++++ .|.+......+ +.++...| ++.+|++.+++++..+|++..
T Consensus 61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK-RWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH
Confidence 44566664332233344445577789999999999 55554444444 66777778 699999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
++.....+....++ .+++++.+.+++..+|.+... .-++.+....++..+|++.++++++.+|.|..+...+..++.
T Consensus 138 ~l~gLa~~y~~~~q--~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~ 214 (822)
T PRK14574 138 LISGMIMTQADAGR--GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHHhhcCC--HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99877677777888 999999999999999997776 666777777778877999999999999999999999888888
Q ss_pred cCCCC
Q 023284 200 RSPLL 204 (284)
Q Consensus 200 ~l~~~ 204 (284)
.++..
T Consensus 215 ~~~~~ 219 (822)
T PRK14574 215 RNRIV 219 (822)
T ss_pred HcCCc
Confidence 87754
No 85
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=6.6e-07 Score=85.15 Aligned_cols=130 Identities=9% Similarity=-0.008 Sum_probs=117.0
Q ss_pred HHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHh---h-----hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284 66 SRSFQLTKEAI---CLNPGNYTVWHFRRQIIETL---H-----TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134 (284)
Q Consensus 66 ~~aL~~~~~~L---~lnP~~~~aW~~R~~~L~~l---~-----~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~ 134 (284)
.+|+.++++++ .++|.+..++-.+.+|-... | .+..++++..+++++++|.+.+|-...|.++...++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~- 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ- 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-
Confidence 68999999999 99999999999888876554 1 246789999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
++.++..+++++.++|+...+|++++|+...-|+.+++++.++++++++|.-..|=.-+-.+
T Consensus 354 -~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 354 -AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred -hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987665544444
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=6.6e-07 Score=79.02 Aligned_cols=162 Identities=10% Similarity=0.093 Sum_probs=142.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
..-+|+...+ -.+...+...+.++..+....+++..+|++.++..-.+......| ++..++.-+.++...+|++..+|
T Consensus 60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g-~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG-NFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc-chHHHHHHHHHHhccCCCChhhh
Confidence 4467888888 334444444555677888888889999999999988888888888 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
+-+|.++.++|+ .+++-.-|.+++++.|.+...-++.+..+.--|+++.|-..+..+...-+.|..+-+++.+++...
T Consensus 138 ~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 138 NLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred hHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 999999999999 999999999999999999999999999999899999999999999999999999999999999888
Q ss_pred CCCchh
Q 023284 202 PLLGGL 207 (284)
Q Consensus 202 ~~~~~~ 207 (284)
|+.+.+
T Consensus 216 g~~~~A 221 (257)
T COG5010 216 GDFREA 221 (257)
T ss_pred CChHHH
Confidence 876543
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.74 E-value=4.7e-07 Score=75.59 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCc--HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 71 LTKEAICLNPGN--YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 71 ~~~~~L~lnP~~--~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
.+..+++.++.. ..+|+..+.+....| ++++++..+++++.+.|+.. .+|...+.++...|+ +++++.++.+
T Consensus 21 ~l~~~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--~~eA~~~~~~ 97 (168)
T CHL00033 21 ILLRILPTTSGEKEAFTYYRDGMSAQSEG-EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--HTKALEYYFQ 97 (168)
T ss_pred hhhHhccCCchhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 333343444444 455566666666666 46777777777776655533 366677777777776 7777777777
Q ss_pred HHHhCcCChhHHhHHHHHHH-------HccCcH-------HHHHHHHHHHhccCCCh
Q 023284 146 MLSLDAKNYHAWSYRQWVLQ-------ALGGWE-------DELDYCQMLLGEDIFNN 188 (284)
Q Consensus 146 aL~~dpkN~~AW~~r~~vl~-------~l~~~~-------eeL~~~~~~l~~dp~n~ 188 (284)
++.++|.+..+|.+++.++. .+|+++ +++..+.+++..+|.+.
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 77777777777777777766 444443 66667777888888765
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.8e-07 Score=85.13 Aligned_cols=185 Identities=14% Similarity=0.073 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284 48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127 (284)
Q Consensus 48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l 127 (284)
.++.+-+...++......++||..+...+...|.+.|..--..++-+.++ ..+++++++..+++.+|.|..+-.--+.-
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~-~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME-QQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH-hHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 35667777788888888899999999999999999999999999999999 59999999999999999998875433333
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC---ChHHHHHHHHHHhcCCCC
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF---NNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~---n~sAW~~r~~ll~~l~~~ 204 (284)
..--++ .+-++.+|.++|++-..+...+.+.|.+...-+.++-.|.++.+++..--+ -...|++.|++.-..|..
T Consensus 334 yfY~~~--PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 334 YFYDNN--PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred cccCCC--hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 333344 889999999999999999999999999998888999999999999987542 347899999998888774
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 205 GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
.-+-.|+.-+|..+|+|..+.+.+..+-...
T Consensus 412 -------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 412 -------NLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred -------HHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 4467788899999999999998877664443
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=8.1e-07 Score=91.31 Aligned_cols=144 Identities=10% Similarity=-0.006 Sum_probs=120.3
Q ss_pred CcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHH----------------
Q 023284 38 PVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ---------------- 101 (284)
Q Consensus 38 ~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~---------------- 101 (284)
-...-.|+|.+.+||...-..+...+..++|++.++.++..+|+...+|++.|.+..+.+. +.
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~~lv~~l~~~~~~~~ 98 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDSNLLNLIDSFSQNLK 98 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhhhhhhhhhhcccccc
Confidence 3455679999999999999999888888999999999999999999999999997766552 22
Q ss_pred -HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 102 -DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 102 -~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
...+++-..+...|.+-.|...++.++.++|. .+++.+.++++|+.||+|..+-++-+..+... +.++|++++.++
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 33344444444455555899999999999999 99999999999999999999999999999888 888888888877
Q ss_pred HhccC
Q 023284 181 LGEDI 185 (284)
Q Consensus 181 l~~dp 185 (284)
+.+.-
T Consensus 176 V~~~i 180 (906)
T PRK14720 176 IYRFI 180 (906)
T ss_pred HHHHH
Confidence 77643
No 90
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.72 E-value=6e-07 Score=69.27 Aligned_cols=104 Identities=13% Similarity=-0.023 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAW 157 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW 157 (284)
.+++..+..+...| +++++++.++.++..+|++ ..++...+.++...|+ +++++..+++++..+|.+ ..++
T Consensus 3 ~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--YADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34566677777777 5888888888888888776 4677778888888887 888888888888888775 4577
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
...+.++.+++++++++.+++++++.+|++..+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 888888888888888888888888888887654
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1e-07 Score=88.90 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=137.3
Q ss_pred CcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHH------------HHHHHHHHHHhhhCHHHHHH
Q 023284 38 PVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTV------------WHFRRQIIETLHTDLQDELA 105 (284)
Q Consensus 38 ~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~a------------W~~R~~~L~~l~~~~~~eL~ 105 (284)
.+-.+.+++...+|...++.++.-....+.|+..+.++|.+.|++.++ |-.+|.-+..-| .+..+-+
T Consensus 192 a~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G-~y~~A~E 270 (486)
T KOG0550|consen 192 AIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG-NYRKAYE 270 (486)
T ss_pred HHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc-chhHHHH
Confidence 455677889999999999998887777789999999999999999854 444444444556 5899999
Q ss_pred HHHHHHHhCCCCh----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284 106 FVGRIAKSNSKNY----QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 106 ~~~~~l~~~pkn~----~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l 181 (284)
+|..+|.++|.|. ..+.+|+.+...+|+ +.+++..|+.++++||.-..|...|+.+...++.|++|.+.+++++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865 568889999999999 9999999999999999999999999999999999999999999999
Q ss_pred hccCC--ChHHHHHHHHHHhcCCC
Q 023284 182 GEDIF--NNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 182 ~~dp~--n~sAW~~r~~ll~~l~~ 203 (284)
+..-. ....|-.-...|++..+
T Consensus 349 q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 349 QLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hhccccchHHHHHHHHHHHHHhhh
Confidence 87755 55666555566664433
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=2.7e-07 Score=93.52 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
..+..|+..+-++|+++|....+|.+.|.+....- +...|-.||+++..+||..+.+|-.-.-..-.... ++.+...
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~--we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEEST--WEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc--HHHHHHH
Confidence 34578999999999999999999999999999887 78899999999999999999999998888888777 9999999
Q ss_pred HHHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 143 TKKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 143 ~~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
+-++-+++|.-. ..|.+||-..-.-+.+-+++..+..+++.+|.+..+|.-.|.+....|++ ..++..+++
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry-------~~AlKvF~k 621 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY-------SHALKVFTK 621 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce-------ehHHHhhhh
Confidence 999999988665 67888887777777888999999999999999999999999999888886 567899999
Q ss_pred HHhcCCCCccHH
Q 023284 221 AILGNPENESPW 232 (284)
Q Consensus 221 ~i~~~P~nesaW 232 (284)
+..++|.+-.+-
T Consensus 622 As~LrP~s~y~~ 633 (1238)
T KOG1127|consen 622 ASLLRPLSKYGR 633 (1238)
T ss_pred hHhcCcHhHHHH
Confidence 999999976554
No 93
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.70 E-value=1.8e-06 Score=84.66 Aligned_cols=205 Identities=15% Similarity=0.133 Sum_probs=160.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
++..++|+.+++.+|+..|.+...|..+|++...++ +++.+-+.|..-++..|.+...|.-..-+-.+-|. +..+-.
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~--~~rAR~ 740 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ--LVRARS 740 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc--hhhHHH
Confidence 344579999999999999999999999999999999 58999999999999999999999888888888887 899999
Q ss_pred HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC------------ch---
Q 023284 142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL------------GG--- 206 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~------------~~--- 206 (284)
.++++.-++|+|...|.-..-+=.+.|..+.|-....++|..-|++.-.|.---++...-++- +.
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 999999999999999999888888899999999999999999999999998665554332221 00
Q ss_pred --------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhcccccccccc
Q 023284 207 --------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEYQKQLCFCSE 271 (284)
Q Consensus 207 --------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
...-++.+.+++.+++.++|++-.+|.+........|. -.++.++...| ++-+|---..||+-
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~-eed~kev~~~c-~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT-EEDQKEVLKKC-ETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC-HHHHHHHHHHH-hccCCCCCcHHHHH
Confidence 01225778899999999999999977655433333322 11222444333 33466666667754
No 94
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.69 E-value=3e-06 Score=80.89 Aligned_cols=178 Identities=6% Similarity=-0.117 Sum_probs=124.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHH------------------------
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIA------------------------ 111 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l------------------------ 111 (284)
..+....+..++|++.++.+++.+|++..++...+.+....| +++++++.+..++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG-AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444566788999999999999999999888888877766 3444444444443
Q ss_pred --------------HhCC----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH--hHHHHHHHHccCcH
Q 023284 112 --------------KSNS----KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW--SYRQWVLQALGGWE 171 (284)
Q Consensus 112 --------------~~~p----kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW--~~r~~vl~~l~~~~ 171 (284)
...| ++..++...+.++...|+ ++++++.++++++++|.+.... ..+......-++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~--~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDD--HDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 3344 355555555555556666 8888888888888888887542 33333322335567
Q ss_pred HHHHHHHHHHhccCCCh--HHHHHHHHHHhcCCCCchhhhhHHHHHHHHH--HHHhcCCCCccHHHHHHHHHccCCc
Q 023284 172 DELDYCQMLLGEDIFNN--SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI--EAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~--sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~--~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
..++.++++++.+|.|. ......|.++.+.+++ +++.++++ .++..+|+++... ++..++.+.+.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-------~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~ 385 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-------IEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-------HHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence 78888888888888888 7777788888777763 67788888 5777888887755 66777766644
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=5.1e-07 Score=64.51 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
+...+.++...+..++|+..+..++...|.+..+|..++.++...+ ++++++++++.++...|++..+|...+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG-KYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3344455555677789999999999999999999999999999988 599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcC
Q 023284 132 GTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpk 152 (284)
|+ ++++...+.++++.+|.
T Consensus 82 ~~--~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GK--YEEALEAYEKALELDPN 100 (100)
T ss_pred Hh--HHHHHHHHHHHHccCCC
Confidence 98 99999999999998874
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=8.7e-07 Score=86.52 Aligned_cols=139 Identities=11% Similarity=0.121 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
.+.+...|.+.+.+|+..|+|......+|..|..+| +-++|..++...+..++++.-+|+--|.+.+.-.. +.+++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~--Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK--YDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh--HHHHHH
Confidence 445578999999999999999999999999999999 58999999999999999999999999999888777 999999
Q ss_pred HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
||..||.++|.|-..|.-...+-.++++++..++.=.+.++.+|++..-|.-....-.-++.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888755443333444
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.64 E-value=5.9e-07 Score=90.96 Aligned_cols=171 Identities=16% Similarity=-0.023 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
..|..+++.+=.++-.+..-|..++..+...+. +++.+...|..++..+|+|..+...|..+...-++ |..+|.+|.
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd--Y~~al~yyk 188 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKD--YRGALKYYK 188 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhcccc--HHHHHHHHH
Confidence 457777777777777777778888877766663 37999999999999999999999999999998888 999999999
Q ss_pred HHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284 145 KMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL 223 (284)
Q Consensus 145 ~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~ 223 (284)
++|.++|..- ..-..+|.++-++++.+.|+..+.+++++||.+.+|..-.+.+.......+ -++..+....++..
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~----s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSD----SYKKGVQLLQRAYK 264 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHh
Confidence 9999998654 555677889999999999999999999999999999998887765554332 25778889999999
Q ss_pred cCCCCccHHHHHHHHHccC
Q 023284 224 GNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 224 ~~P~nesaW~y~~~ll~~~ 242 (284)
.+|+|+.+-+++...+--.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFK 283 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhc
Confidence 9999999998887665543
No 98
>PRK11906 transcriptional regulator; Provisional
Probab=98.63 E-value=1.1e-06 Score=83.77 Aligned_cols=151 Identities=8% Similarity=-0.011 Sum_probs=125.7
Q ss_pred HHHhCCCcH---HHH----HHHHHHHHHhh--hCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHh---CC----CC
Q 023284 75 AICLNPGNY---TVW----HFRRQIIETLH--TDLQDELAFVGRIA---KSNSKNYQLWHHRRWVAEKL---GT----GA 135 (284)
Q Consensus 75 ~L~lnP~~~---~aW----~~R~~~L~~l~--~~~~~eL~~~~~~l---~~~pkn~~aW~hR~~ll~~l---~~----~~ 135 (284)
+...-|.+. .+| +.||.-...-+ ...+.++.++.+++ .++|....++....|+.... |- ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 344457777 777 56665443322 24679999999999 99999999988888777543 21 12
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el 215 (284)
..+++.+.++++++||.|..|-...|.++...+.++.++..+++++.++|+...+|+++|+++.-.|+. ++++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-------~~a~ 392 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-------EEAR 392 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-------HHHH
Confidence 677889999999999999999999999999999999999999999999999999999999998888874 7889
Q ss_pred HHHHHHHhcCCCCccHH
Q 023284 216 NFTIEAILGNPENESPW 232 (284)
Q Consensus 216 ~~~~~~i~~~P~nesaW 232 (284)
+.++++++++|..-.+=
T Consensus 393 ~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHHhccCchhhHHH
Confidence 99999999999977654
No 99
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.63 E-value=5.4e-08 Score=58.57 Aligned_cols=29 Identities=38% Similarity=0.873 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 103 ELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 103 eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
||+++..+|..+||||++|+||+|+++++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 44455555555555555555555554443
No 100
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.63 E-value=7e-06 Score=78.12 Aligned_cols=187 Identities=7% Similarity=-0.038 Sum_probs=126.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------------------
Q 023284 57 AVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN------------------- 117 (284)
Q Consensus 57 ~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn------------------- 117 (284)
.+....+..+.|++.+++++..+|++..+......++...| +++++++.+.++.+..+.+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG-AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445566688888888889999999888888888887777 5777776666665544433
Q ss_pred -----------------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 118 -----------------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 118 -----------------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
..+...-+..+...|+ .+++...+.++++..| +.....-.+.+ ..++.++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--HDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHH
Confidence 2233333333344455 7778888888887433 43333222222 126778899
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHH
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLL 254 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~ 254 (284)
+..+++++.+|+|.......|.+....+. ++++.+++++++...|+++. +..+..++...++ ...+..
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-------~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~----~~~A~~ 382 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGE-------WQEASLAFRAALKQRPDAYD-YAWLADALDRLHK----PEEAAA 382 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC----HHHHHH
Confidence 99999999999999888888888877776 47788899999999999765 3345556665543 345666
Q ss_pred HHHhhhh
Q 023284 255 SVFESFE 261 (284)
Q Consensus 255 ~~~~~~~ 261 (284)
++.+++.
T Consensus 383 ~~~~~l~ 389 (398)
T PRK10747 383 MRRDGLM 389 (398)
T ss_pred HHHHHHh
Confidence 6666653
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.63 E-value=5.9e-06 Score=81.05 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=46.0
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+++++.+..+..+|.+++|+++++++|+..|.....+..++-++.+.|.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 45577788899999999999999999999999999999999999999985
No 102
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.62 E-value=7.3e-08 Score=57.97 Aligned_cols=31 Identities=58% Similarity=1.116 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
+||+++..+|..||+||++|+||.|++.+++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l~ 31 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQLN 31 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHcc
Confidence 5788889999999999999999999888764
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.59 E-value=2.1e-06 Score=84.40 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=108.9
Q ss_pred cChhHHHHHHHHHHHHh---cC--CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-------hCHHHHHHHHHHHH
Q 023284 44 YKPEFSETMSYFRAVYY---SD--ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-------TDLQDELAFVGRIA 111 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~---~~--~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-------~~~~~eL~~~~~~l 111 (284)
-.|...+||.++-.... .. +...+|+.+++++++++|++..+|..+..+..... ..+..+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566677766533222 11 12358999999999999999999998777553321 12345555566655
Q ss_pred Hh--CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 112 KS--NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 112 ~~--~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
.. +|....++.-.+.+....|+ ++++...++++++++| +..+|..+|.++...|+.++|++.+.+++.++|.+..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~--~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGK--TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 53 67776666666666566677 9999999999999999 6889999999999999999999999999999999985
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=2.5e-06 Score=65.80 Aligned_cols=102 Identities=8% Similarity=-0.035 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHR 124 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR 124 (284)
++...+..+...+..++|+..+..++..+|++ ..+++.++.++...| ++++++..++.++..+|.+ ..++...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34444555566677799999999999999987 578999999999999 5999999999999999886 5789999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYH 155 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~ 155 (284)
+.++..+|+ +.+++..++++++..|++..
T Consensus 83 ~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGD--KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCC--hHHHHHHHHHHHHHCcCChh
Confidence 999999999 99999999999999999864
No 105
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.53 E-value=4.8e-06 Score=81.67 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=150.5
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
|+.=|+|...|...+++..+.+..+.|-+.|..-++.+|.....|.....+=...| .+..+-..++++...||||...|
T Consensus 678 lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~-~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 678 LKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG-QLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred HHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc-chhhHHHHHHHHHhcCCCcchhH
Confidence 45668899999999999999998899999999999999999999998888877777 57899999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc------------------------------CcH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG------------------------------GWE 171 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~------------------------------~~~ 171 (284)
.-...+-.+.|. .+.+-....+||+.-|++--.|.--.|+..+-+ .++
T Consensus 757 le~Ir~ElR~gn--~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 757 LESIRMELRAGN--KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 998888888888 899999999999999999999988666543221 257
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
++.+++.+++..+|+|-.+|.+....-...|.-. .-.+.+.+...-.|.+-..|.-
T Consensus 835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee-------d~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE-------DQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH-------HHHHHHHHHhccCCCCCcHHHH
Confidence 8999999999999998877765543333345321 2234556666789999999954
No 106
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=3.5e-07 Score=64.01 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
++.++...|+ +++++.+++++++.+|.|..+|..+|.++...|++++|+..++++++++|+|
T Consensus 3 ~a~~~~~~g~--~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGD--YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTH--HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3445555555 6666666666666666666666666666666666666666666666666665
No 107
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2e-06 Score=81.24 Aligned_cols=172 Identities=16% Similarity=0.088 Sum_probs=142.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--hhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL--HTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE 139 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l--~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee 139 (284)
.+..+.|++.+...-+.+.+-..|-..--..|..+ |+++..+-.+-+.++.++-=|.++..++|.+...-|. ++++
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd--~dka 509 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD--LDKA 509 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc--HHHH
Confidence 33446777776555555555444443333344444 7788899999999999999999999999999998898 9999
Q ss_pred HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284 140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI 219 (284)
Q Consensus 140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~ 219 (284)
+++|..+|.-|.....|.++.|.....+|+.++||+|+-++-.+-.+|..+......+...+... ..+|+.+.
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~-------aqaie~~~ 582 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP-------AQAIELLM 582 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH-------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999888888777653 45789999
Q ss_pred HHHhcCCCCccHHHHHHHHHccC
Q 023284 220 EAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 220 ~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
++-.+-|+++..-.-+.-++..-
T Consensus 583 q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcc
Confidence 99999999999887777777654
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=8.2e-07 Score=87.71 Aligned_cols=162 Identities=9% Similarity=0.127 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---------------------------hhCHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL---------------------------HTDLQDE 103 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l---------------------------~~~~~~e 103 (284)
.|.-.--++...+...+|-.+-.+-|+ +|.+.-.|-.+|.++... ..+++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 344333444444555566666666666 666666666666665321 1258889
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
.+.++..++++|-..+.|+.+|.+--++++ ++.+..+|.+.+.++|.|..+|++....+.+++.-.+|..+..++++-
T Consensus 505 ~~hle~sl~~nplq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 505 DKHLERSLEINPLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHHHhhcCccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999999999999999999999999988 899999999999999999999999999998888888999999999999
Q ss_pred cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
+-+|-..|-+--.+....+.. +.++..+.+.+
T Consensus 583 n~~~w~iWENymlvsvdvge~-------eda~~A~~rll 614 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEF-------EDAIKAYHRLL 614 (777)
T ss_pred CCCCCeeeechhhhhhhcccH-------HHHHHHHHHHH
Confidence 988888998888887777764 44555555443
No 109
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.51 E-value=6.1e-06 Score=78.75 Aligned_cols=142 Identities=8% Similarity=-0.115 Sum_probs=111.7
Q ss_pred HHHHHHHHhCC----CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCCCHHHHHHHH
Q 023284 70 QLTKEAICLNP----GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW--HHRRWVAEKLGTGAVNKELQFT 143 (284)
Q Consensus 70 ~~~~~~L~lnP----~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW--~hR~~ll~~l~~~~~~eel~~~ 143 (284)
+....+....| ++..++...+..+...| +.+++++.++++++..|.+.... ..++......++ ....++.+
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~--~~~~~~~~ 322 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED--NEKLEKLI 322 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC--hHHHHHHH
Confidence 35555566666 47777877778788888 59999999999999999998653 333333322344 78899999
Q ss_pred HHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHH--HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284 144 KKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQ--MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI 219 (284)
Q Consensus 144 ~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~--~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~ 219 (284)
+++++.+|.|. ......||++.+.|+|++|.++++ .+++.+|++..+. +.+.++.++|+. +++.+++.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~-------~~A~~~~~ 394 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDK-------AEAAAMRQ 394 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCH-------HHHHHHHH
Confidence 99999999999 778889999999999999999999 6888999888755 889999999986 44455555
Q ss_pred HHH
Q 023284 220 EAI 222 (284)
Q Consensus 220 ~~i 222 (284)
+++
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 543
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.5e-05 Score=70.49 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
...+....-.....+|++..+ ......+...| +-...+....+++..+|++..+-.--|......|+ +.+++..+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G-~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--~~~A~~~~r 124 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRG-DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--FGEAVSVLR 124 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcc-cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--hHHHHHHHH
Confidence 345888888888999999999 77777777777 45678888899999999998888777777778888 999999999
Q ss_pred HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
++..++|.|..+|+-+|.++.++|++++|-..|.+++++.|.+.++.++.+..+.--++. +.+...+..+...
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-------~~A~~lll~a~l~ 197 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-------EDAETLLLPAYLS 197 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-------HHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999887666663 4556666666666
Q ss_pred CCCCccHHHHHHHHHccC
Q 023284 225 NPENESPWRYLRGLYKDD 242 (284)
Q Consensus 225 ~P~nesaW~y~~~ll~~~ 242 (284)
-+.|..+=..+..+....
T Consensus 198 ~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 198 PAADSRVRQNLALVVGLQ 215 (257)
T ss_pred CCCchHHHHHHHHHHhhc
Confidence 666777766666665543
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=3.4e-05 Score=73.57 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
|.-..+|+-+.......+ .+.+++..++.++...|+|...|-.++.++...++ ..++++.+++++.++|...-.|..
T Consensus 303 ~~~~aa~YG~A~~~~~~~-~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 303 RGGLAAQYGRALQTYLAG-QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--AKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred ccchHHHHHHHHHHHHhc-ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCccHHHHH
Confidence 889999999888888888 58999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 160 RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
.+.++.+.|+..+++...++.+..+|.|...|.+.+.....+|..
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999988888764
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.45 E-value=3.7e-06 Score=86.59 Aligned_cols=124 Identities=9% Similarity=-0.079 Sum_probs=106.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH-----------------
Q 023284 75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN----------------- 137 (284)
Q Consensus 75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~----------------- 137 (284)
+....|.+..+|..........+ ++++++..++.++..+|+...+|++.|.++.+.++ +.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~--~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRP--LNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc--hhhhhhhhhhhhcccccch
Confidence 55689999999999888887778 69999999999999999999999999998877664 22
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
..++++...+...+.|-.|...++.++.++|+++++.+.++++|+.||.|..|.++.+..+...
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 3344455555556666699999999999999999999999999999999999999999988776
No 113
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=1.1e-05 Score=79.30 Aligned_cols=146 Identities=7% Similarity=-0.095 Sum_probs=109.7
Q ss_pred HhCCCcHHHHH--HHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---CC---CCHHHHHHHHHHH
Q 023284 77 CLNPGNYTVWH--FRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL---GT---GAVNKELQFTKKM 146 (284)
Q Consensus 77 ~lnP~~~~aW~--~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l---~~---~~~~eel~~~~~a 146 (284)
..-|.+.+||- .|+.-+...+ .....++.+++++++.+|.+..+|..+.++.... +. .....+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45677777775 3443332221 2377999999999999999999999887765432 11 0134455566666
Q ss_pred HHh--CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 147 LSL--DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 147 L~~--dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
+.+ +|.+..++.-.+.+....|++++|...++++++++| +.-+|..+|.++...|+. +++++.+.+++++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~-------~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN-------RLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Confidence 664 777766666566666667899999999999999999 578999999999888884 7899999999999
Q ss_pred CCCCcc
Q 023284 225 NPENES 230 (284)
Q Consensus 225 ~P~nes 230 (284)
+|.++.
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 999985
No 114
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.41 E-value=1.4e-06 Score=60.93 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=45.0
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284 89 RRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN 153 (284)
Q Consensus 89 R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN 153 (284)
++..+...| ++++++.+++.++..+|++..+|...|.++...|+ +++++..++++++++|.|
T Consensus 3 ~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQG-DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCC
Confidence 455666666 47777777777777777777777777777777777 777777777777777776
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=5.1e-06 Score=82.26 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=135.2
Q ss_pred cChhHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 44 YKPEFSETMSY---FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 44 ~~p~~~~a~~~---~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
|-|..+..|.. +.-++.+.+-...|+..+++. ..|-..-.|+..+|. -.++-.+..+-++ .|...-.
T Consensus 390 ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~-~~kaeei~~q~le-k~~d~~l 459 (777)
T KOG1128|consen 390 YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQ-HGKAEEINRQELE-KDPDPRL 459 (777)
T ss_pred ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcc-cchHHHHHHHHhc-CCCcchh
Confidence 44444444443 344566677777888888875 445556667777773 4455555555555 5555556
Q ss_pred HHHHHHHHHHh---------------------C-----CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 121 WHHRRWVAEKL---------------------G-----TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 121 W~hR~~ll~~l---------------------~-----~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
|..+|-++... | +..+.++...++..++++|--...|+.+|.+--++++++.+.
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 65555444210 1 123889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
.+|.+.+..+|+|..+|++......+++.- +++..+..++++-+-+|-..|.+...+..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k-------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKK-------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhh-------HHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence 999999999999999999998887777653 56777888899989888889987777666543
No 116
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.36 E-value=1.7e-06 Score=82.39 Aligned_cols=69 Identities=9% Similarity=-0.080 Sum_probs=42.8
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.+|+++.+|+++|.++..+| ++++++.+|+++|.++|.+.. +|++++.++..+|+ ++++++++.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lG-ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKG-RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 36666666666666666666 366666666666666666653 36666666666666 66666666666665
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.36 E-value=0.00015 Score=68.97 Aligned_cols=183 Identities=10% Similarity=-0.037 Sum_probs=128.8
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284 60 YSDERSSRSFQLTKEAICLNPGNYTVWH-FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK 138 (284)
Q Consensus 60 ~~~~~s~~aL~~~~~~L~lnP~~~~aW~-~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e 138 (284)
...+..++|.+.+.++.+.+|++..+-. ....+....| +++.++..++++...+|++..+......++...|+ +++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHH
Confidence 4456678999999999999999875543 3366666667 69999999999999999999999999888888887 777
Q ss_pred HHHHHHHHHHhCcC------------------------------------------ChhHHhHHHHHHHHccCcHHHHHH
Q 023284 139 ELQFTKKMLSLDAK------------------------------------------NYHAWSYRQWVLQALGGWEDELDY 176 (284)
Q Consensus 139 el~~~~~aL~~dpk------------------------------------------N~~AW~~r~~vl~~l~~~~eeL~~ 176 (284)
+++.+.++.+..+. +..+..-.+-.+...|..++|...
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77666655544433 333444445555566677888888
Q ss_pred HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHH
Q 023284 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSV 256 (284)
Q Consensus 177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~ 256 (284)
+.++++..| +.......+.+.. +. .+++++.++++++.+|+|+.....++.++...+. .+.+...+
T Consensus 286 L~~~l~~~~-~~~l~~l~~~l~~--~~-------~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~----~~~A~~~l 351 (398)
T PRK10747 286 ILDGLKRQY-DERLVLLIPRLKT--NN-------PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE----WQEASLAF 351 (398)
T ss_pred HHHHHhcCC-CHHHHHHHhhccC--CC-------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----HHHHHHHH
Confidence 888888444 4444433333321 22 3668999999999999999877666666555432 34444444
Q ss_pred Hhh
Q 023284 257 FES 259 (284)
Q Consensus 257 ~~~ 259 (284)
-.+
T Consensus 352 e~a 354 (398)
T PRK10747 352 RAA 354 (398)
T ss_pred HHH
Confidence 444
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.36 E-value=4.6e-06 Score=81.62 Aligned_cols=126 Identities=11% Similarity=0.142 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.|.+-|++.+.+|+..|++...-.-+|..|..+|+ -++|.+++...+..|++..-+|+--|.+.+.-+.|++|+.||.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 48899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR 233 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~ 233 (284)
.|+.++|+|-+.|.-...+-.+++.+.+. ++-=.+.++..|++-..|.
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~-------~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGY-------LETRNQLLQLRPSQRASWI 147 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHhhhhhHHHHH
Confidence 99999999999999888887777765432 2223456778888777764
No 119
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.7e-05 Score=73.09 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
|+..+.+.-.+.++.-.+.+.+|+..|+++..+||...++----+.+|..-| +++.--+....++.++.....-|.=-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 3445555556666666667778888888888888888777777777777666 476666667777777766666676666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC--CC
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS--PL 203 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l--~~ 203 (284)
.++..-.+ +..+|.+.+++|..+|+|..+..-+|.++..+++.++|.-.|..++.+-|..-.. |+|.+..-| ++
T Consensus 308 ~~l~~~K~--~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 308 QLLYDEKK--FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhh--HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHHHHhhch
Confidence 66666666 8999999999999999999999999999999999999999999999998876543 333332111 11
Q ss_pred Cch-----------------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 204 LGG-----------------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 204 ~~~-----------------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
..+ .....+++-.++++.|.++|+.--+-+-+.-++.
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 100 1123477888999999999997666655554443
No 120
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-05 Score=70.95 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL-GTGAVNKELQFTK 144 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-~~~~~~eel~~~~ 144 (284)
++.+.-.+..|..||.|..-|...|.+...++ ++..++..|.+++++.|+|...|..-+.++... |...-.++-..++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~-~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALG-RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45677788899999999999999999999999 599999999999999999999999998888755 3334667889999
Q ss_pred HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
++|..||.|..+-++.+.....-|++.+|+...+.+++..|-|..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999988754
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=3.7e-06 Score=59.93 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
++.+.++ ++++++++++++.++|.+..+|..+|.++..+|++++|++.++++++..|++..+-..+
T Consensus 4 ~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 4 IYLQQED--YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHhCCC--HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3444555 88888888888888888888888888888888888888888888888888777665433
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=5.8e-05 Score=71.98 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
+..++|+..++.++...|+|...|..++.++...++ ..++++.+.+++..+|.++..|...+..+.+.|+ +.+++..
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk-~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--~~eai~~ 396 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK-AKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--PQEAIRI 396 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--hHHHHHH
Confidence 444789999999999999999999999999999994 8999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
++..+..+|.|...|.+.+-+...+|+-.++...+-+.....-+-..|-......
T Consensus 397 L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 397 LNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999988888877777666655444444433333
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.32 E-value=2.2e-06 Score=63.26 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY 176 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~ 176 (284)
++++|+.++++++..+|. +...|...+.++.+.|+ +.+++.++++ ++.+++|..+....+.++..+|++++|++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 466777777777777774 45566667777777776 7777777777 667777766666667777777777777776
Q ss_pred HHHH
Q 023284 177 CQML 180 (284)
Q Consensus 177 ~~~~ 180 (284)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6653
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=5e-06 Score=75.89 Aligned_cols=176 Identities=15% Similarity=0.082 Sum_probs=141.2
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
-|...+.......+....+..++|+++|..+++..|.|.++-..-+--...-+ ..+=+|.+++++|++--.+.+.+.+-
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~-~PE~AlryYRRiLqmG~~speLf~Ni 364 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN-NPEMALRYYRRILQMGAQSPELFCNI 364 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC-ChHHHHHHHHHHHHhcCCChHHHhhH
Confidence 45555555555666667777789999999999999999876543322222222 46889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
|.+...-++ ++-.|.++.+++..-. .-...|++.|.+.-..|++.-|-.|+.-+|.-|++|..|+++.+.+-.+-
T Consensus 365 gLCC~yaqQ--~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 365 GLCCLYAQQ--IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred HHHHHhhcc--hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 999888877 9999999999998543 45688999999999999999999999999999999999999999988877
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
|...+ +-..+..+-.+.|+-..
T Consensus 443 G~i~~-------Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 443 GDILG-------ARSLLNAAKSVMPDMAE 464 (478)
T ss_pred CchHH-------HHHHHHHhhhhCccccc
Confidence 87533 44455566667776544
No 125
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.8e-05 Score=74.93 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=146.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
+.+.-+|-.+.+.++.++--+..|..++|.+...-| +++++++++..+|..+..+.++.++-|.....+|+ ++++|+
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng-d~dka~~~ykeal~ndasc~ealfniglt~e~~~~--ldeald 545 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG-DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN--LDEALD 545 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC-cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC--HHHHHH
Confidence 444467888889999999999999999999988888 79999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch---------------
Q 023284 142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG--------------- 206 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~--------------- 206 (284)
|+-++-.+=-.|.......+.++..+.+...|++++-++...-|.+.....-.+-+..+-|.-+.
T Consensus 546 ~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 546 CFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc
Confidence 99999999999999999999999999999999999999999999999999888877665442110
Q ss_pred ------------hhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 207 ------------LIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 207 ------------~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
.....+++|.+++++-.+.|+ .+-|..
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~-~~kwql 664 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPN-QSKWQL 664 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc-HHHHHH
Confidence 013457888999998888887 677754
No 126
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.26 E-value=3.2e-05 Score=69.72 Aligned_cols=105 Identities=9% Similarity=-0.074 Sum_probs=79.2
Q ss_pred HHHHHHHHHHH-HhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC---ChhH
Q 023284 84 TVWHFRRQIIE-TLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK---NYHA 156 (284)
Q Consensus 84 ~aW~~R~~~L~-~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk---N~~A 156 (284)
..++.....+. ..+ ++.+++..|+.++..+|++ ..+++..|.++...|+ +++++..+.++++.+|. ...+
T Consensus 143 ~~~Y~~A~~l~~~~~-~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKS-RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--KDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCcchhHH
Confidence 56666665543 334 5788888888888888887 3678888888888887 88888888888876665 5677
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW 191 (284)
|...+.++..+|+.++|...++++++.+|+...|=
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 88888888888888888888888888888776553
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.25 E-value=3.2e-05 Score=69.69 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=86.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHH
Q 023284 57 AVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK---NYQLWHHRRWVAEK 130 (284)
Q Consensus 57 ~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk---n~~aW~hR~~ll~~ 130 (284)
.++.+.+..++|+..|..+|...|++ ..++++.|.++...| ++++++..|.+++..+|+ ...+|...+.++..
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33344566789999999999999998 489999999999999 699999999999987766 68999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284 131 LGTGAVNKELQFTKKMLSLDAKNYHA 156 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~dpkN~~A 156 (284)
+|+ .++++..++++++..|+...+
T Consensus 230 ~g~--~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 230 KGD--TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred cCC--HHHHHHHHHHHHHHCcCCHHH
Confidence 999 999999999999999998765
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.22 E-value=1.4e-05 Score=76.19 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=51.5
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHhhhCHHHHHHHHHHHHHh
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTV---WHFRRQIIETLHTDLQDELAFVGRIAKS 113 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~a---W~~R~~~L~~l~~~~~~eL~~~~~~l~~ 113 (284)
-+|++..++..++..+.+.++.++|+.+++++|.++|++..+ |++++.++..+| ++++++.++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-r~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-EGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 567777777777777777777777777777777777777744 777777777777 477777777777776
No 129
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.4e-05 Score=68.54 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=84.2
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284 90 RQIIETLHTDLQDELAFVGRIAKSNSKNYQ-----LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-----aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl 164 (284)
|.-+..-| +++++..-|..+|.+.|...+ .+.+|+..+.+++. .+.+++.|.++|+++|.+..|.-.|+.++
T Consensus 102 GN~~F~ng-dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNG-DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--WESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcc-cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--HHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 33344445 588888888888888887664 56778888888988 99999999999999999999999999999
Q ss_pred HHccCcHHHHHHHHHHHhccCCChHH
Q 023284 165 QALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 165 ~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
.++..+++|++-|.+.++.||++..|
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999998855
No 130
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.19 E-value=0.00051 Score=55.78 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=125.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHhhhCHHHHHHHHHHHHHhCC---CChHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQ-IIETLHTDLQDELAFVGRIAKSNS---KNYQL 120 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~-~L~~l~~~~~~eL~~~~~~l~~~p---kn~~a 120 (284)
.+....++...+......+...+++..+..++...+.....+..... ++...+ .+..++.++.+++..+| .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG-DYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCccchHHH
Confidence 33344444444555555555678888888888888887766777766 677777 58888888888887776 34455
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
...++..+...+. +..++..+.+++...+. ...++...+..+...+.++.++..+.+++...|.....+...+..+.
T Consensus 170 ~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 170 LLALGALLEALGR--YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHhhhHHHHhcC--HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 5555555666666 88888888888888888 68888888888888888888888888888888886667777776666
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284 200 RSPLLGGLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~ 227 (284)
..+. ++++.....+++..+|.
T Consensus 248 ~~~~-------~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 248 ELGR-------YEEALEALEKALELDPD 268 (291)
T ss_pred HcCC-------HHHHHHHHHHHHHhCcc
Confidence 3332 35667778888888886
No 131
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=9.4e-06 Score=70.38 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160 (284)
Q Consensus 81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r 160 (284)
.-+...+-||.+..++|. ..=+-.-+.++|.++|+-+.+.++.|.-+..-|+ ++.+++.++.++++||.+-.|--+|
T Consensus 63 eRA~l~fERGvlYDSlGL-~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 63 ERAQLLFERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--FDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHHhcchhhhhhH-HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--chHHHHHhhhHhccCCcchHHHhcc
Confidence 346778888888888884 4445556678899999999999999988888888 8999999999999999999999999
Q ss_pred HHHHHHccCcHHHHHHHHHHHhccCCCh--HHHHHH
Q 023284 161 QWVLQALGGWEDELDYCQMLLGEDIFNN--SAWNQR 194 (284)
Q Consensus 161 ~~vl~~l~~~~eeL~~~~~~l~~dp~n~--sAW~~r 194 (284)
|..+..-|++.-|.+-+.+.-..||++. +.|.|.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 9888888898888888888888888887 566654
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=3.2e-05 Score=72.39 Aligned_cols=145 Identities=16% Similarity=0.071 Sum_probs=101.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~ 134 (284)
++..+.+.+....|...|++++..-.....+ +.++.-.....-+ .+..+-..++.+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-------------~~ee~~~~~~~k~-------~~~lNlA~c~lKl~~- 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-------------DEEEQKKAEALKL-------ACHLNLAACYLKLKE- 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccC-------------CHHHHHHHHHHHH-------HHhhHHHHHHHhhhh-
Confidence 4556666666677888887776643221111 1111111111111 233456677788888
Q ss_pred CHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHH
Q 023284 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSE 214 (284)
Q Consensus 135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~e 214 (284)
+.+++..|+++|+++|+|.-|.+.||-++..++.++.|...+.++++.+|.|..+-.....+..+...+ .+.+
T Consensus 273 -~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~------~~ke 345 (397)
T KOG0543|consen 273 -YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY------EEKE 345 (397)
T ss_pred -HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH------HHHH
Confidence 999999999999999999999999999999999999999999999999999988877666665554432 3556
Q ss_pred HHHHHHHHhcCCC
Q 023284 215 VNFTIEAILGNPE 227 (284)
Q Consensus 215 l~~~~~~i~~~P~ 227 (284)
-+.+.+.+..-+.
T Consensus 346 kk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 346 KKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHhhcccc
Confidence 6677777665553
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.16 E-value=1.5e-05 Score=56.68 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=36.8
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
+.+.+..++|+++++.++.++|++..+|..++.++..+| ++.+++..++++++.+|.+..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG-RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-cHHHHHHHHHHHHHHCCCcHHH
Confidence 334444566666666666666666666666666666666 3666666666666666655544
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=2.4e-05 Score=67.13 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNY-----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG 132 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~ 132 (284)
-+.+.+.+++|..-|..+|.++|... ..+.+|+.++..++. ++.+++-|.++|.++|.+-.|...|..++.++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456667899999999999999876 466788888889984 999999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHhCcCChhH
Q 023284 133 TGAVNKELQFTKKMLSLDAKNYHA 156 (284)
Q Consensus 133 ~~~~~eel~~~~~aL~~dpkN~~A 156 (284)
. ++++|+.|.+++++||++-.|
T Consensus 183 k--~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 183 K--YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred h--HHHHHHHHHHHHHhCcchHHH
Confidence 7 999999999999999998754
No 135
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=5.6e-05 Score=60.06 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC---ChHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF---NNSAWN 192 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~---n~sAW~ 192 (284)
.++++++|++..+|+ .++++.+|.+++...... ..++...+..+..+|++++|+..+++.+...|+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~--~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 456777777777777 777788888777754333 457777777777888888888888888777777 667777
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
....+|..+++. +++++.+..++
T Consensus 80 f~Al~L~~~gr~-------~eAl~~~l~~l 102 (120)
T PF12688_consen 80 FLALALYNLGRP-------KEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHCCCH-------HHHHHHHHHHH
Confidence 777777777774 44555544444
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=7.2e-06 Score=60.42 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPG--NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~--~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
+..++|+.++++++...|. +..+|...+.++...| ++++++.++++ +..+|++..+....+.++..+|+ +++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHHH
Confidence 4458999999999999995 6788999999999999 59999999999 99999999999999999999999 99999
Q ss_pred HHHHHH
Q 023284 141 QFTKKM 146 (284)
Q Consensus 141 ~~~~~a 146 (284)
+.++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998875
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.14 E-value=0.0011 Score=53.65 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=144.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHH-H
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAIC--LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW-V 127 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~--lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~-l 127 (284)
............+...+++..+..++. ..+....++...+.+...++ .+..++..+..++...+.+...+...+. +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG-KYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 333344444445555788888888887 78999999999999999988 4899999999999999998888888887 8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCC
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF-NNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-n~sAW~~r~~ll~~l~~ 203 (284)
+...|. +..++.++.+++..+| ........++..+...+.+++++..+.+++...+. ...++...+......+.
T Consensus 140 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGD--YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCC--HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 888998 9999999999999887 35555666666677788999999999999999999 68888888887777664
Q ss_pred CchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 204 LGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
++.++..+..++...|.....+......+.
T Consensus 218 -------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 218 -------YEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred -------HHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 367888999999999986556655555555
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00013 Score=66.03 Aligned_cols=122 Identities=14% Similarity=0.015 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC---cHHHHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG---WEDELDY 176 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~---~~eeL~~ 176 (284)
.++-+.-++..|..||.|..-|.-.|-++..+|+ +..++..|.+++++.|+|...|.--+-++..... -.++-..
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 5667777888999999999999999999999999 9999999999999999999999999888876543 4688899
Q ss_pred HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
+++++..||.|..+.++.++....-+++ ++++......+...|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~-------~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDY-------AEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999998888884 7889999999998888654
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00012 Score=69.68 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=99.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
++...++.++|+++++++.+.+|+ +......++...+ .-.++++.+.+++..+|.++....-....+...++ ++
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~-~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--~~ 251 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMN-EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--YE 251 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HH
Confidence 344456678999999999999987 4445566666666 46799999999999999999999988888888888 99
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.|+.+..+++++-|.++.+|.+.+-++..+|++++||...+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999996665
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.09 E-value=0.00042 Score=68.16 Aligned_cols=225 Identities=13% Similarity=0.136 Sum_probs=141.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHH----H--------------Hhhh---------
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII----E--------------TLHT--------- 98 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L----~--------------~l~~--------- 98 (284)
.|-..++..++.++.+.++.++|...+..+|..||+|+.-+.....++ . .+..
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~ 114 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR 114 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence 344566777888999999999999999999999999997776655555 1 0100
Q ss_pred ---------------------------------C----HH--HHHHHHHHHHH-------------------hCCCChHH
Q 023284 99 ---------------------------------D----LQ--DELAFVGRIAK-------------------SNSKNYQL 120 (284)
Q Consensus 99 ---------------------------------~----~~--~eL~~~~~~l~-------------------~~pkn~~a 120 (284)
+ +. +-..++..++. ..|...-.
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 0 00 01111122211 12334434
Q ss_pred H--HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 121 W--HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 121 W--~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
| ++....+..+|. +++|+++++++|+..|.......-++-++.+.|++.+|.++.+.+-.+|+.|--.=+--.-.+
T Consensus 195 w~~~~lAqhyd~~g~--~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGD--YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 5 777888889999 999999999999999999999999999999999999999999999999999854322222222
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHHhcC--CCC-----ccHHHHHHHH-----HccCCccCCCChhhHHHHHhhhhcc-cc
Q 023284 199 TRSPLLGGLIAMRDSEVNFTIEAILGN--PEN-----ESPWRYLRGL-----YKDDTESWINDPRMLLSVFESFEYQ-KQ 265 (284)
Q Consensus 199 ~~l~~~~~~~~~~~~el~~~~~~i~~~--P~n-----esaW~y~~~l-----l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (284)
-+.++ .+++.+.+....+.+ |.. +..|+....- ....+.++..+-.+..-|.+..+-| |+
T Consensus 273 LRa~~-------~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDF 345 (517)
T PF12569_consen 273 LRAGR-------IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDF 345 (517)
T ss_pred HHCCC-------HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccH
Confidence 23343 245555443333222 221 3477544211 1123334444433333333322222 34
Q ss_pred cccccc-CCCCcCCc
Q 023284 266 LCFCSE-HTFRSYLP 279 (284)
Q Consensus 266 ~~~~~~-~~~~~~~~ 279 (284)
.+||-+ +++|+|+-
T Consensus 346 H~Yc~RK~t~r~Y~~ 360 (517)
T PF12569_consen 346 HSYCLRKMTLRAYVD 360 (517)
T ss_pred HHHHHhhccHHHHHH
Confidence 567765 56788763
No 141
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.09 E-value=1.7e-05 Score=66.87 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc----------CcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG----------GWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG 205 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~----------~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~ 205 (284)
++.+.+.++.....||.+..++++-|-+|..+. .+++|++-++++|.++|....|....|.++..++.+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 566777777777778888887777777776653 3578888999999999999999999999988776542
Q ss_pred ----hhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 206 ----GLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 206 ----~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
++...++++.+||.++...+|+|+..+.-
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 24467899999999999999999875543
No 142
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=2.5e-05 Score=54.77 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
+++|+..+++++..+|.|..++...+.++...|++++|.+.+++++..+|+|..++.
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 666667777777777777777776666666667777777777777777766644443
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=97.97 E-value=0.00022 Score=59.39 Aligned_cols=104 Identities=7% Similarity=-0.084 Sum_probs=90.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS 158 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~ 158 (284)
.++..+.-+-.+--+...| ++++|..+|.-+...+|-|+.-|...+.+.+.++. +++|+.+|..+..+++.|+..-+
T Consensus 33 s~~~le~iY~~Ay~~y~~G-k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~--y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQG-RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ--FQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred CHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccCCCCccc
Confidence 3333444455555566667 59999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 159 YRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
|-|.++..+|+.++|..++..+++ .|.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 999999999999999999999998 344
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00062 Score=66.47 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=94.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHhCCCCHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW-HHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW-~hR~~ll~~l~~~~~~eel~ 141 (284)
+..++|+....++|.+.|++.+|...+=.+|..+++ |+++|.+.++-.... -+... ++|..+..+++. .++++.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk--~Dealk 100 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK--LDEALK 100 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc--HHHHHH
Confidence 334899999999999999999999999889999885 999996544332211 11222 799999999999 999999
Q ss_pred HHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 142 FTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
+++ ..|+.+-..-.-++.++.++++|+++++.|...++-+-.+..
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 998 555656667788899999999999999999988776655543
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=0.0004 Score=55.21 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC---ChhHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK---NYHAW 157 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk---N~~AW 157 (284)
.+++.+++++..+| ..++++.+|++++...+.. ..++...+..+..+|+ +++++..+++.+...|. +....
T Consensus 2 ~~~~~~A~a~d~~G-~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~--~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLG-REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR--YDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCccccHHHH
Confidence 46788899999999 4889999999999865444 5678888899999999 99999999999999888 77888
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
.....++..+|+.+++++.+-.++..+
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888889999999999999888877633
No 146
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.91 E-value=9.7e-05 Score=62.33 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT--DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFT 143 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~--~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~ 143 (284)
+.|.+.++.....||.+..++++-|..|..|.. ...++.+ .+++++.-+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~-----------------------------miedAisK~ 58 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK-----------------------------MIEDAISKF 58 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH-----------------------------HHHHHHHHH
Confidence 445555566666666666666666666655532 0011111 266677777
Q ss_pred HHHHHhCcCChhHHhHHHHHHHHccC-----------cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 144 KKMLSLDAKNYHAWSYRQWVLQALGG-----------WEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 144 ~~aL~~dpkN~~AW~~r~~vl~~l~~-----------~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+.+|.++|+...|....|.++..++. |++|.+||+++...+|+|...+.-...
T Consensus 59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 77788888887777777777766552 678899999999999999876554443
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=9.1e-05 Score=64.35 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=107.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~ 134 (284)
|+.++.+.+.-.=|-.-++++|.++|+-+.++|+.|..+..-| +++.+++.|+.+++.||.+--+-.+||..+.--|+
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR- 148 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR- 148 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-cchHHHHHhhhHhccCCcchHHHhccceeeeecCc-
Confidence 3334444444333445678899999999999999999998888 79999999999999999999999999999988888
Q ss_pred CHHHHHHHHHHHHHhCcCCh--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 135 AVNKELQFTKKMLSLDAKNY--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 135 ~~~eel~~~~~aL~~dpkN~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
+.-+.+-+-+.-+-||++. ..|.|. ...--+..+|-.-..+--+...+....|+--++.|.++
T Consensus 149 -~~LAq~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki 213 (297)
T COG4785 149 -YKLAQDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI 213 (297)
T ss_pred -hHhhHHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc
Confidence 8888888888889999997 455552 22223456665555544455566778888777776555
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.0013 Score=53.40 Aligned_cols=127 Identities=9% Similarity=-0.004 Sum_probs=94.7
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHH
Q 023284 51 TMSYFRAVYYS--DERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWH 122 (284)
Q Consensus 51 a~~~~r~~~~~--~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~ 122 (284)
+-..|..++.. .+....+-..++.++..+|+. ..+....+.+....| ++++++..++.++...|.. ..+..
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g-~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG-DYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 33344444443 333356777789999999998 456666777777777 6999999999999987655 34666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l 181 (284)
..+.++...|+ +++++..++. +.-.+-...++..+|.++...|++++|...|.++|
T Consensus 90 ~LA~~~~~~~~--~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQ--YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCC--HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67778888888 9999999866 34455556778888999999999999999998875
No 149
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.002 Score=59.08 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh---------------------------------------------
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--------------------------------------------- 97 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--------------------------------------------- 97 (284)
+.+++|++++-.+++.+|..+++....|.+..+-|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45578888888888888888877777666665443
Q ss_pred --------------------------hCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284 98 --------------------------TDLQDELAFVGRIAKSNSKNYQL---WHHRRWVAEKLGTGAVNKELQFTKKMLS 148 (284)
Q Consensus 98 --------------------------~~~~~eL~~~~~~l~~~pkn~~a---W~hR~~ll~~l~~~~~~eel~~~~~aL~ 148 (284)
+++++|++.-+++.++.++.+.+ -++--.....+..+..+.++..+.++++
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 14677777777777777766643 2333333333443448889999999999
Q ss_pred hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH-HHHHHHHHhcCCC
Q 023284 149 LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA-WNQRYFVVTRSPL 203 (284)
Q Consensus 149 ~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA-W~~r~~ll~~l~~ 203 (284)
-||++..|=.-.|.+....|+++.|++.++++++.||...+- ..-...+..++|+
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999987643 2222333444554
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00014 Score=50.79 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH 155 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~ 155 (284)
+++|+..+++++..+|++..++...+.++...|+ ++++...+++++..+|.|..
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--YDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGGGTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCHHH
Confidence 5555555555555555555555555555555555 55555555555555555533
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00024 Score=66.62 Aligned_cols=110 Identities=16% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---------------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKN---------------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN---------------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
+|..+.+.|+ +..|..-|++++..=... .-+..+.+.+..+++.|.+|+.+++++|+++|.|.
T Consensus 214 ~Gn~~fK~gk--~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGK--FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred hhhHHHhhch--HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 4555666666 666666666655421110 12466778888899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
-|.+-||.++..++.+ +.|...+.++++++|+|..+=.-+..+-.+.
T Consensus 292 KALyRrG~A~l~~~e~-------~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 292 KALYRRGQALLALGEY-------DLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hHHHHHHHHHHhhccH-------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 9999999999888875 7788999999999999988766665555443
No 152
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.75 E-value=0.002 Score=63.14 Aligned_cols=196 Identities=9% Similarity=0.067 Sum_probs=138.1
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK 116 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk 116 (284)
-|......+.++.++.+.+...+|+.+|.++|.+ +|.-..+.+..+.++-..| .+.++-.++++++.+--+
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG-KFAEAEEYCERALEIYEK 315 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHH
Confidence 3444555666777788888888999999998864 5666678888888887777 477888888877765433
Q ss_pred --------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--------CChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 117 --------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA--------KNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 117 --------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp--------kN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
-......-+.+....++ +++++.++.+++++.- .=...-.+.+.++.++|++++|.+++.++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNE--YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 23334455666677777 8888888888887532 22456677899999999999999999999
Q ss_pred Hhcc--------CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh-cCCCCccHHHHHHHHHccCCc
Q 023284 181 LGED--------IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL-GNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 181 l~~d--------p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~-~~P~nesaW~y~~~ll~~~~~ 244 (284)
|.+. +.-.-..++.+.....+.+++.+..++.+++... +..- -.|+-......+..++...++
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHccc
Confidence 9874 3333445556666667777766667777777776 5432 233334477777777777765
No 153
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.70 E-value=0.0001 Score=67.91 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284 88 FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 88 ~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l 167 (284)
-||.-....| .|+++++||.+.+..+|-|.....+|...+.++.+ +.-+-..|+.++.+|-....|++.|+.+-..|
T Consensus 102 E~GN~yFKQg-Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQG-KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--FAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred Hhhhhhhhcc-chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--HHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555555 37888888888888888888888888877777776 77777778888888888888888888888888
Q ss_pred cCcHHHHHHHHHHHhccCCChHH
Q 023284 168 GGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 168 ~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
|...+|-+-++.+|++.|.+...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 88888888888888888876653
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.66 E-value=0.00063 Score=62.21 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=117.9
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
..+..++||+++... .+.++-.-+=.++..+++ .+-|-+-+..+-+.+..+.-+=.--.|+-...|.+.+.++.
T Consensus 114 ~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R-~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR-PDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 345556777766543 556666666667777774 77788888888888877776666677887777876799999
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
-+|+.+.+..+.+....+..+.+...+|+|++|.+.+.+++..+|+|..++.++..+-..+|+..+ ..-++..+
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~------~~~~~l~q 261 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE------AAERYLSQ 261 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH------HHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh------HHHHHHHH
Confidence 999999999899999999999999999999999999999999999999999999877777776421 12234555
Q ss_pred HHhcCCCCcc
Q 023284 221 AILGNPENES 230 (284)
Q Consensus 221 ~i~~~P~nes 230 (284)
+-..+|+++-
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 5567888753
No 155
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.65 E-value=4.1e-05 Score=46.93 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
|.++|+++|+|..+|++.|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=97.65 E-value=0.0011 Score=55.40 Aligned_cols=104 Identities=7% Similarity=-0.058 Sum_probs=88.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
..++++.-+....+.--+-..++.++|..+|..+..++|-++.-|...+.|.+.++ .+++|+.+|..+..++++++..-
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-QFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcccCCCCcc
Confidence 34555555443333322334455589999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLS 148 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~ 148 (284)
+|-|.++..+|+ ...|..++..+++
T Consensus 109 f~agqC~l~l~~--~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRK--AAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCC--HHHHHHHHHHHHh
Confidence 999999999999 9999999999999
No 157
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.64 E-value=0.0024 Score=62.55 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh----
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS---- 113 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~---- 113 (284)
|....+..+....+...++.+.|...+..+|.+ .|.-.+.-..-+.++..+++ +.+++..|++++.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHh
Confidence 444455555666667778889999999999998 77777888878888888884 77888888888763
Q ss_pred ----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--------ChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284 114 ----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--------NYHAWSYRQWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 114 ----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l 181 (284)
+|.-..+...-+.++-..|+ +.++..+|++|+++--+ =....+.-+.+....+.+++|+.++.+++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GK--f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGK--FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45555556666777878888 99999999999986544 33456677788888999999999999888
Q ss_pred hccC-----CC---hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 182 GEDI-----FN---NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 182 ~~dp-----~n---~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
++.- .| .....+.+.++.+.|++.++..+++++|....+
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 8742 33 344566678888899975554445544444433
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.62 E-value=0.0016 Score=62.06 Aligned_cols=108 Identities=6% Similarity=0.045 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.++.++++++++.+.+|. ++..-..++...++ -.+++..+.++|+.+|.++....-.+-.+...++++.|+....
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--EVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 589999999999999986 44444455555566 7899999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHH
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFT 218 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~ 218 (284)
+++...|.+..+|.+.+.+...++.+ +.||...
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~-------e~ALlaL 291 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDF-------ENALLAL 291 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCH-------HHHHHHH
Confidence 99999999999999999999999885 5566443
No 159
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.62 E-value=0.0018 Score=52.18 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=63.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCC
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----YQLWHHRRWVAEKLGT 133 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----~~aW~hR~~ll~~l~~ 133 (284)
.+...+.-+.||+.|.++|.+.|+...++|+|...+.-.| +.+++|+-+++++++.-.- -+++..||.+++.+|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~-~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG-DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC-ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555577888888888888888888888888877666 4678888888877654322 2566667777777776
Q ss_pred CCHHHHHHHHHHHHHhCcC
Q 023284 134 GAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 134 ~~~~eel~~~~~aL~~dpk 152 (284)
.+.+...|+.+-++-.+
T Consensus 131 --dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 --DDAARADFEAAAQLGSK 147 (175)
T ss_pred --hHHHHHhHHHHHHhCCH
Confidence 66666666666655443
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.55 E-value=0.0016 Score=52.48 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=72.4
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC----hhHHhHHHHHHH
Q 023284 90 RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN----YHAWSYRQWVLQ 165 (284)
Q Consensus 90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN----~~AW~~r~~vl~ 165 (284)
+..+..-| ++..+|+.|.++|..-|++..++++|...++--|+ .+++|+.+++++++-..- -+++..||.+.+
T Consensus 50 ~valaE~g-~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAG-DLDGALELFGQALCLAPERASAYNNRAQALRLQGD--DEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 44445555 68889999999999999999999999888888888 888999999998875322 377888888888
Q ss_pred HccCcHHHHHHHHHHHhcc
Q 023284 166 ALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 166 ~l~~~~eeL~~~~~~l~~d 184 (284)
.+|+-+.|..-|+.+-++-
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8888888877777665543
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.55 E-value=0.00018 Score=66.26 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
-.||.-+.+-|+ ++++++||.+.+..+|.|.-...+|+.++.++++|..|-.-|+.+|.+|-...-|+.-|+.+-..|
T Consensus 101 KE~GN~yFKQgK--y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGK--YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccc--hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 357778888888 999999999999999999999999999999999999999999999999999999999999888778
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
|.. +++-+-++.+|++.|++..
T Consensus 179 g~~-------~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 179 GNN-------MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hhH-------HHHHHhHHHHHhhCcccHH
Confidence 763 6777888899999999754
No 162
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0059 Score=59.83 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=103.9
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH--H-HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT--V-WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~--a-W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
..|+..+|....-..+-+.+.+++|| ++|+.++.+-. . .+.|.-|..+++ ..+++|.+++ ..++...-+
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~l 112 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKL 112 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHcc-cHHHHHHHHh---cccccchHH
Confidence 34666666555544444455556666 34444553111 1 145666666666 3666666665 333444444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH------------------------------HhCcC-ChhHHhHHHHHHHHccC
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKML------------------------------SLDAK-NYHAWSYRQWVLQALGG 169 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL------------------------------~~dpk-N~~AW~~r~~vl~~l~~ 169 (284)
-.-|+.++.++|+ ++++++.|..++ ...|. .|.-.++.+.++-.-|.
T Consensus 113 l~L~AQvlYrl~~--ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 113 LELRAQVLYRLER--YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 5556666666665 555555544432 23333 56677888888888889
Q ss_pred cHHHHHHHHHHH-------hccCCC--------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccH
Q 023284 170 WEDELDYCQMLL-------GEDIFN--------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESP 231 (284)
Q Consensus 170 ~~eeL~~~~~~l-------~~dp~n--------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa 231 (284)
|.+|++...+++ ..+-.| +..-...++++..+|.- +++...+...|..+|-|+..
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt-------~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT-------AEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHhcCCCchH
Confidence 998988888772 222233 23445667888888874 67888889999999999863
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.50 E-value=0.0038 Score=50.71 Aligned_cols=114 Identities=15% Similarity=0.022 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHhHHHHHHHHccCcHH
Q 023284 99 DLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWSYRQWVLQALGGWED 172 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~~r~~vl~~l~~~~e 172 (284)
+....-..++.++..+|+. ..+....+-+....|+ +++++..++.++...|.+ .-+....+.++...|.+++
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4556666789999999999 5566667777778888 999999999999987655 3477778899999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
|+..++. +...+....++..+|-++...|+. ++++..|.++|
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~-------~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDY-------DEARAAYQKAL 145 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCH-------HHHHHHHHHhC
Confidence 9999966 556667778888999999999985 66777777764
No 164
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.47 E-value=0.023 Score=60.65 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCHHH
Q 023284 62 DERSSRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--NSKNYQLWHHRRWVAEKLGTGAVNK 138 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--~pkn~~aW~hR~~ll~~l~~~~~~e 138 (284)
.+..++|+++++.+.+.+ +.+...|+..-..+...| ++++++++++.+... .| +...|+.-...+.+.|+ +++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~--~ee 667 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-DWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD--LDK 667 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC--HHH
Confidence 334455555555555544 233444544444444444 355555555555543 22 23344444444445555 666
Q ss_pred HHHHHHHHHHhC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284 139 ELQFTKKMLSLD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN 216 (284)
Q Consensus 139 el~~~~~aL~~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~ 216 (284)
++++++.+.+.. +-|...|+.....+.+.|++++|++.++++.+.. .-|...|+..-..+.+.++ ++++++
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~-------~eeAle 740 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-------LPKALE 740 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC-------HHHHHH
Confidence 666666666543 2345556665666666666666666666665432 1234455555444444444 355666
Q ss_pred HHHHHH
Q 023284 217 FTIEAI 222 (284)
Q Consensus 217 ~~~~~i 222 (284)
.+++..
T Consensus 741 lf~eM~ 746 (1060)
T PLN03218 741 VLSEMK 746 (1060)
T ss_pred HHHHHH
Confidence 666544
No 165
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.41 E-value=0.00035 Score=42.16 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk 152 (284)
+|+++|.+...+|+ +++++.+++++|+++|+
T Consensus 3 ~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGD--YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCC--chHHHHHHHHHHHHCcC
Confidence 34444444444444 44444444444444443
No 166
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.41 E-value=0.00021 Score=43.12 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=30.4
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
.+|+++|.+...++++++|+.+++++|+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 589999999999999999999999999999985
No 167
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.38 E-value=0.014 Score=59.40 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-CCChHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-SKNYQLWHHRR 125 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-pkn~~aW~hR~ 125 (284)
..+|+..-..+.+.+..++|++++.++... .|+.. .++..-..+..+| .++++.+.+..+++.. +.+..+++...
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g-~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLA-LLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcc-chHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 345666666666777778888888887653 44443 3444444555555 3666667666666654 44555555556
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
..+.+.|+ +++|...++++.+ +|..+|+-....+.+-|+.++|++.++++++..
T Consensus 368 ~~y~k~G~--~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 368 DLYSKWGR--MEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHCCC--HHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666 7777777776654 466677777777777777777777777777643
No 168
>PLN03077 Protein ECB2; Provisional
Probab=97.37 E-value=0.024 Score=59.19 Aligned_cols=167 Identities=11% Similarity=0.088 Sum_probs=111.4
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCHH
Q 023284 60 YSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--NSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 60 ~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
.+.+..++|+..++.+ +.+..+|+..-..+...| ..+++++.++++... .|. ...+..--..+.+.|. ++
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G-~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~--v~ 606 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG-KGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM--VT 606 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh--HH
Confidence 3445567888887775 667888988877777778 588999999988764 343 3333333334556677 89
Q ss_pred HHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284 138 KELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 138 eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el 215 (284)
+++.+++.+.+..+- |...++-...++.+.|++++|.+.++++ ...|+ ...|...-......+.. +.+-
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~-------e~~e 677 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHV-------ELGE 677 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCh-------HHHH
Confidence 999999998865433 3345566667788888999999998886 34443 45565443333222221 2233
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 216 NFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 216 ~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
...+++++++|++.+.+..+..++...+
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 4567888999999988777666665544
No 169
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.36 E-value=0.019 Score=58.58 Aligned_cols=177 Identities=13% Similarity=0.045 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 62 DERSSRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
.+..++|.+++..+++.. +.+..+++..-..+...| ++++|.+.|+++.. +|..+|+.-...+.+.|+ .++++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~--~~~A~ 411 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-RMEDARNVFDRMPR---KNLISWNALIAGYGNHGR--GTKAV 411 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC-CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC--HHHHH
Confidence 344466777777776655 444555555555555556 46677777666543 355666666666666666 66666
Q ss_pred HHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh--HHHHHHHHHHhcCCCCchhh---------
Q 023284 141 QFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN--SAWNQRYFVVTRSPLLGGLI--------- 208 (284)
Q Consensus 141 ~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~--sAW~~r~~ll~~l~~~~~~~--------- 208 (284)
+.++++.+... -|...+......+.+.|..++++++++.+.+...-.. ..++-...++.+.|+.+++.
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 66666665332 1333344334444555555666666655554321111 11221122222222211100
Q ss_pred ----------------hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 209 ----------------AMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 209 ----------------~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
..++.+...+++++.+.|++.+.+..+..++.+.++
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 002445566777888899888877777666666544
No 170
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.35 E-value=0.00016 Score=69.09 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.+..++.++.++|.++|.+...|..|.....+.+. +..|+....++++.||+..-|++.||.+...++.+.+|+..++
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--FGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeech--hhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 57888999999999999999999999877777766 8889999999999999999999999999999999999999999
Q ss_pred HHHhccCCChHHH
Q 023284 179 MLLGEDIFNNSAW 191 (284)
Q Consensus 179 ~~l~~dp~n~sAW 191 (284)
++....|++..+-
T Consensus 97 ~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 97 KVKKLAPNDPDAT 109 (476)
T ss_pred HhhhcCcCcHHHH
Confidence 9999999887753
No 171
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.039 Score=50.83 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHhh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWH---FRRQIIETLH-TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~---~R~~~L~~l~-~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
++|++.-++..++.|+.+.+=. |=-.....+. .+.+.++..+.++++.|||+..|=--.|-+....|+ ++.+++
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~--y~~AV~ 235 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD--YQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc--hHHHHH
Confidence 6788888888999888774432 2222222222 357889999999999999999998888888888898 999999
Q ss_pred HHHHHHHhCcCChhHH-hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 142 FTKKMLSLDAKNYHAW-SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW-~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
.++++++.||....-= --..-++.++|+.++.+.+..++++..++-.--..--..+...-|. +.+-.+..+
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------~~Aq~~l~~ 307 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI--------DAAQAYLTR 307 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------HHHHHHHHH
Confidence 9999999999876433 3345677889999999999999999988865443332333322222 445566667
Q ss_pred HHhcCCCC
Q 023284 221 AILGNPEN 228 (284)
Q Consensus 221 ~i~~~P~n 228 (284)
-|...|.-
T Consensus 308 Ql~r~Pt~ 315 (389)
T COG2956 308 QLRRKPTM 315 (389)
T ss_pred HHhhCCcH
Confidence 77777763
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0059 Score=54.71 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 66 SRSFQLTKEAICLN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK----SNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 66 ~~aL~~~~~~L~ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~----~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
.=.+.++.++++.+ |.....-...|.+-.+.| +.+.+-.+++.+-+ ++---...-.||...+-.+|.+.+.+|.
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 45778888999988 556666667788888888 67777777774433 3333334445665555566666699999
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---hHHHHHHHH
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN---NSAWNQRYF 196 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n---~sAW~~r~~ 196 (284)
.++++.+..||+|.-+-++++.++..+|+..+|+...+.++.++|+. +|...+...
T Consensus 273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT 331 (366)
T ss_pred HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999984 344444433
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.034 Score=47.93 Aligned_cols=145 Identities=8% Similarity=-0.034 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh---H
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH---A 156 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~---A 156 (284)
..+.+..+......| ++.+++..+++++...|.+. .+....+......|+ +.+++..+++.++.+|++.. |
T Consensus 5 ~~~lY~~a~~~~~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 5 AEALYQKALEALQQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--YEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCcchhhH
Confidence 344555566555656 47777777777777666543 456666666666666 77777777777777776653 5
Q ss_pred HhHHHHHHHHcc-----------CcHHHHHHHHHHHhccCCChHHHHHHHHHH---hcCCCCc---h----hhhhHHHHH
Q 023284 157 WSYRQWVLQALG-----------GWEDELDYCQMLLGEDIFNNSAWNQRYFVV---TRSPLLG---G----LIAMRDSEV 215 (284)
Q Consensus 157 W~~r~~vl~~l~-----------~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll---~~l~~~~---~----~~~~~~~el 215 (284)
.+.+|.+..... ...+|+..+...|...|+..-+-.-+..+. ..+.... . ...-+..++
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 666666543321 235788888888888888765543332221 1110000 0 001156788
Q ss_pred HHHHHHHhcCCCCcc
Q 023284 216 NFTIEAILGNPENES 230 (284)
Q Consensus 216 ~~~~~~i~~~P~nes 230 (284)
..++.+|+..|+-..
T Consensus 162 ~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 162 IRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHCCCCch
Confidence 889999999998765
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.25 E-value=0.0054 Score=56.11 Aligned_cols=139 Identities=10% Similarity=0.006 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWV 127 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~pkn~~aW~hR~~l 127 (284)
.+++...-.++.+.++.+-|-+.+..+-+.+.+..-.-..-.|+-...|. .++++.-+|+.+....|.+....+....+
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34444455566678888889999988888887766555555566656553 48899999999999989999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH-HHHHHHHHHHhccCCChH
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE-DELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~-eeL~~~~~~l~~dp~n~s 189 (284)
...+|+ +++|.+.+..+++.+|+|..+..++.-+-..+|+-. ..-+++.++-..+|.+.-
T Consensus 211 ~l~~~~--~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 211 HLQLGH--YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHCT---HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHhCC--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999 999999999999999999999999999889999884 445677777778888643
No 175
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.22 E-value=0.00035 Score=66.75 Aligned_cols=124 Identities=12% Similarity=0.005 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
...+.|+.++.+||.++|.++..+..|.......+ ++..||.-+.++++.+|+..-+++.||.....+++ +.+++..
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~--~~~A~~~ 94 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE--FKKALLD 94 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeec-hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH--HHHHHHH
Confidence 44578999999999999999999999987777777 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
+.+...+.|....+=---.-+= .+ -..+-+++++-.++++.+.-.+.
T Consensus 95 l~~~~~l~Pnd~~~~r~~~Ec~-~~----vs~~~fe~ai~~~~~d~~s~~~~ 141 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDATRKIDECN-KI----VSEEKFEKAILTPEGDKKSVVEM 141 (476)
T ss_pred HHHhhhcCcCcHHHHHHHHHHH-HH----HHHHhhhhcccCCccCCcccccc
Confidence 9999999999876532211110 00 11233566667777666554444
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00041 Score=42.41 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=14.0
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284 107 VGRIAKSNSKNYQLWHHRRWVAEKLGT 133 (284)
Q Consensus 107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~ 133 (284)
|+++|+++|+|+.+|+..+.++...|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 345555555555555555555555554
No 177
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.19 E-value=0.00063 Score=48.96 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---C----cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL---D----AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~---d----pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
.++++.+.++..+|+ ++++++++++++++ . |.-..++++.|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGR--YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445556666666666 66666666666643 1 112345566677777777777777777777664
No 178
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.18 E-value=0.15 Score=54.55 Aligned_cols=168 Identities=8% Similarity=-0.035 Sum_probs=92.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPG-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNK 138 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~e 138 (284)
+.+..++|+.+++.+.+.... +..+|+..-..+-..| +++++++.++.+..... .|...|+.-...+.+.|+ +++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--~ee 525 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--VAK 525 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--HHH
Confidence 344456677777776664432 3444555444455555 46677777777665543 266666666666666666 777
Q ss_pred HHHHHHHHHHhC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc----cCCChHHHHHHHHHHhcCCCCchhhhhHHH
Q 023284 139 ELQFTKKMLSLD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE----DIFNNSAWNQRYFVVTRSPLLGGLIAMRDS 213 (284)
Q Consensus 139 el~~~~~aL~~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~----dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~ 213 (284)
++.+++.+.+.. .-|...|+.....+.+.|.+++|++.++++... .|+ ...|+..-..+.+.+.. ++
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~l-------de 597 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQV-------DR 597 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCH-------HH
Confidence 777777666543 234556666666666666777777777766542 232 33444333334444442 44
Q ss_pred HHHHHHHHHhcC-CCCccHHHHHHHHH
Q 023284 214 EVNFTIEAILGN-PENESPWRYLRGLY 239 (284)
Q Consensus 214 el~~~~~~i~~~-P~nesaW~y~~~ll 239 (284)
+++.+++..+.. +.+...|+-+...+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 555555555443 22334554444333
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.17 E-value=0.00076 Score=40.38 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
+|+++|.++...|++++|+++++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555543
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.064 Score=47.73 Aligned_cols=146 Identities=9% Similarity=-0.057 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---h
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW---HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---H 155 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW---~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~ 155 (284)
..+.++..+.-...-| +++++++.++.++..+|....+= ...+.+..+.++ +++++..+++.++.+|.+. .
T Consensus 31 ~~~~~Y~~A~~~~~~g-~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDG-NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCcCCCchHH
Confidence 5666777777776666 68999999999999999886554 555667777777 9999999999999888776 4
Q ss_pred HHhHHHHHHHHcc-----C-------------cHHHHHHHHHHHhccCCChHHHHHHHHHH---hcCCCCc-h------h
Q 023284 156 AWSYRQWVLQALG-----G-------------WEDELDYCQMLLGEDIFNNSAWNQRYFVV---TRSPLLG-G------L 207 (284)
Q Consensus 156 AW~~r~~vl~~l~-----~-------------~~eeL~~~~~~l~~dp~n~sAW~~r~~ll---~~l~~~~-~------~ 207 (284)
|.+-+|.+...++ . -.+|+..+++.|+..|+...+---+..+. .++.+.. . .
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666533332 0 14688899999999998765544333221 1111100 0 0
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcc
Q 023284 208 IAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 208 ~~~~~~el~~~~~~i~~~P~nes 230 (284)
..-+..++..++.+|...|+-..
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCch
Confidence 01145678888889988888765
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.0011 Score=42.63 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
+|...+.++..+|++++|.+.++++|+.+|+|..+|...+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555666666666666666666666666555443
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.014 Score=51.99 Aligned_cols=113 Identities=4% Similarity=-0.191 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH---hHHHHHHHHccCcHHHHHHHHHHHhccCCCh---H
Q 023284 116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW---SYRQWVLQALGGWEDELDYCQMLLGEDIFNN---S 189 (284)
Q Consensus 116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW---~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~---s 189 (284)
.....++..+.....-|+ ++++++.+++++..+|....+= ...+.+..+.+++++|+..+++.|+.+|++. .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~--y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGN--WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 366777778888877788 9999999999999999887554 6677888999999999999999999999886 4
Q ss_pred HHHHHHHHHhcCC-----------CCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 190 AWNQRYFVVTRSP-----------LLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 190 AW~~r~~ll~~l~-----------~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
|++.+|.+...++ ..+........+++.+.+.|+..|+.+-
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 4666665533232 1111112246788999999999998764
No 183
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.10 E-value=0.0016 Score=38.97 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN 153 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN 153 (284)
.+|++.|.++...|+ +++++.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~--~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN--YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCcCC
Confidence 456666777777766 777777777777777665
No 184
>PLN03077 Protein ECB2; Provisional
Probab=97.08 E-value=0.054 Score=56.57 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYC 177 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~ 177 (284)
.+++++..++.. +++..+|+.....+.+.|+ .+++++.++++.+...+ |...+...-..+.+.|+++++++++
T Consensus 539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 366776666654 6778888888777777787 88888888888775432 4444555455566778888888888
Q ss_pred HHHHhccCCChHH--HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 178 QMLLGEDIFNNSA--WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 178 ~~~l~~dp~n~sA--W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
+.+.+.+.-.... ++....++.+.|+ ++++.+.+++. ...|+ ...|.-+...+.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~-------~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGK-------LTEAYNFINKM-PITPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCC-------HHHHHHHHHHC-CCCCC-HHHHHHHHHHHH
Confidence 8888554433333 3333344445554 36677776653 35555 567766655443
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.04 Score=47.48 Aligned_cols=147 Identities=10% Similarity=-0.040 Sum_probs=101.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHH
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHHRRWVAE 129 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~hR~~ll~ 129 (284)
+......+...+|+..++.++...|... .|....+.+....| ++.+++..++..+..+|++.. |.+.+|....
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3334445666899999999999988754 77888888888888 699999999999999998874 7888888765
Q ss_pred HhCC---------CCHHHHHHHHHHHHHhCcCChhHHhHHHH-----------------HHHHccCcHHHHHHHHHHHhc
Q 023284 130 KLGT---------GAVNKELQFTKKMLSLDAKNYHAWSYRQW-----------------VLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 130 ~l~~---------~~~~eel~~~~~aL~~dpkN~~AW~~r~~-----------------vl~~l~~~~eeL~~~~~~l~~ 183 (284)
.... ....+++..+..+++..|+...+---+.. ...+.|.+..|+..++.+|+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4421 12567899999999999998877533222 112234678889999999999
Q ss_pred cCCChHH---HHHHHHHHhcCCC
Q 023284 184 DIFNNSA---WNQRYFVVTRSPL 203 (284)
Q Consensus 184 dp~n~sA---W~~r~~ll~~l~~ 203 (284)
.|+-..+ +........++|.
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCchHHHHHHHHHHHHHHhCC
Confidence 9887654 3333333344443
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.95 E-value=0.0023 Score=41.13 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r 160 (284)
+|...+.++..+|+ ++++++.++++++.+|+|..+|...
T Consensus 3 ~~~~la~~~~~~G~--~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQ--PDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 45555556666665 6666666666666666666666554
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0041 Score=44.62 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
..+++..+.++..+| +++++++++++++.+. |.-..+++..|.++..+|+ ++++++++++++++
T Consensus 5 a~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELG-RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD--YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence 445555666666655 3666666666655431 1123445556666666666 66666666666655
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.67 E-value=0.055 Score=49.09 Aligned_cols=126 Identities=14% Similarity=-0.007 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
.++|-..+.++++..+-++.+|..-..+=..++.+.+.|.+.|+.+++..|++...|.+-.-.+..+++ .+++-..++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d--~~~aR~lfe 94 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND--INNARALFE 94 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 478889999999777778999886666655656677779999999999999999999998888888988 999999999
Q ss_pred HHHHhCcCCh---hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 145 KMLSLDAKNY---HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 145 ~aL~~dpkN~---~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
+++..-|... ..|..-.-.=.+.|+.+.......++.+.-|.+.+...
T Consensus 95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999877777 45555444556788888889999999999999776654
No 189
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0076 Score=53.21 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=76.2
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVN 137 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ 137 (284)
.+...++...|+.+|.++|.+||....-|.+|..+-..+. .++....-+.++++++|...-+-+.-|..+..... +.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~--~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG--YD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc--cc
Confidence 3344566789999999999999999999999999988887 58899999999999999999999988877777766 89
Q ss_pred HHHHHHHHHHH
Q 023284 138 KELQFTKKMLS 148 (284)
Q Consensus 138 eel~~~~~aL~ 148 (284)
+++..+.++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988843
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.65 E-value=0.083 Score=43.13 Aligned_cols=110 Identities=9% Similarity=-0.054 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH---hHHHHHHHHccCcHHHHHHHHHHHhccCCCh---HHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW---SYRQWVLQALGGWEDELDYCQMLLGEDIFNN---SAWN 192 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW---~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~---sAW~ 192 (284)
..++..+.-...-|+ +.++++.++.+....|-.-.+= .-.+.+..+-+.+++|++.+++.|++||.+. -|++
T Consensus 11 ~~ly~~a~~~l~~~~--Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEALQKGN--YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 334444444444455 6666666666666666554332 2233444555666677777777777766665 3455
Q ss_pred HHHHHHhcCC--------CCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 193 QRYFVVTRSP--------LLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 193 ~r~~ll~~l~--------~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
.+|.+-.... +.+....-...++..+.++|...|+.+-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 5554433321 1111111246688889999999999764
No 191
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.01 Score=52.40 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=75.7
Q ss_pred hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHH
Q 023284 98 TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYC 177 (284)
Q Consensus 98 ~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~ 177 (284)
+.|..++.++.++|.++|....-|.+|.....++.. ++.....|.++++++|+-.-+-+..|..+.....+.+++...
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--WEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--hhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 357899999999999999999999999999988887 999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 023284 178 QMLLG 182 (284)
Q Consensus 178 ~~~l~ 182 (284)
.++..
T Consensus 102 qra~s 106 (284)
T KOG4642|consen 102 QRAYS 106 (284)
T ss_pred HHHHH
Confidence 98843
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.61 E-value=0.11 Score=42.48 Aligned_cols=105 Identities=9% Similarity=-0.022 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hH
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HA 156 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~A 156 (284)
...++..+.-...-| +++++.+.++.+....|-.. +|-.-.+.+...-++ ++++++.+++.++++|.+. .|
T Consensus 10 ~~~ly~~a~~~l~~~-~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKG-NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--YEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCCCccHH
Confidence 345556666666656 58888888888888877654 334444555555666 8888888888888888776 56
Q ss_pred HhHHHHHHHHccC---------------cHHHHHHHHHHHhccCCChHH
Q 023284 157 WSYRQWVLQALGG---------------WEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 157 W~~r~~vl~~l~~---------------~~eeL~~~~~~l~~dp~n~sA 190 (284)
++.+|........ ...|+..+.++|...|+..-|
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 7778776655432 357788888888888876543
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.61 E-value=0.43 Score=45.02 Aligned_cols=178 Identities=11% Similarity=0.026 Sum_probs=110.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC---C---CChHHHHHHHHHH
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN---S---KNYQLWHHRRWVA 128 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~---p---kn~~aW~hR~~ll 128 (284)
+..++...+..+-|..-.+.++..+|.+.++..-..++...+| ++.+.+..+.++-+.. + ..++-|..++.+-
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g-~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLG-AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhc-cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 3334445555678888888889999999988888888888887 4666666665554322 1 1122233333222
Q ss_pred HHhCC----------------------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 129 EKLGT----------------------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 129 ~~l~~----------------------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
+.... ...++|.+.+..+|+..-..- -.+..-.-..++.+.=+
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHH
Confidence 21110 115566666666666543322 11111112234566677
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
...++++..+|.+...+...|.+..+-+. +.++-++++.+|...|+ .+.|.++...+.+.++
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~-------w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKL-------WGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhH-------HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 88888888888888888888877665543 45666777788888887 5567788888887765
No 194
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.56 E-value=0.0041 Score=37.22 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=18.3
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
.+|+.+|.++..+|++++|++++.++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555566666666666666666666655
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.51 E-value=0.074 Score=54.55 Aligned_cols=134 Identities=11% Similarity=0.165 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
...+++.-++++++.+|+..-|=..++.++.++|+ .++++.+.+..=..-+.+-....-...+++.++.++++..+|+
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 47789999999999999999999999999999999 8999988877777777788888888899999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHccC
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES-PWRYLRGLYKDD 242 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes-aW~y~~~ll~~~ 242 (284)
+++..+|+ ..-..+.+.+.-+-+.+.. .-+.+++.+ +..|+++- -|+-...++...
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~---qQkaa~~Ly----K~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKK---QQKAALQLY----KNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhCCcccchHHHHHHHHHHhc
Confidence 99999999 6555555544433333211 112234433 35677764 776666666654
No 196
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.40 E-value=0.0025 Score=58.77 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
+..+.|++.++.+|.+||.....+..|+.++..|++ ...++.-|+.++.+||...+-+-.|+..-..+|. ++++-..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k-p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK-PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WEEAAHD 204 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccC-CchhhhhhhhhhccCcccccccchhhHHHHHhhc--hHHHHHH
Confidence 334677777777777777777777777777777774 5677777777777777777777777777777777 7777777
Q ss_pred HHHHHHhCc
Q 023284 143 TKKMLSLDA 151 (284)
Q Consensus 143 ~~~aL~~dp 151 (284)
+..++++|-
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 777776653
No 197
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.31 E-value=0.2 Score=48.66 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH-----HHHHhhhCHHHHHHHHHHHHHhCC------CChHHHHHH----------
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQ-----IIETLHTDLQDELAFVGRIAKSNS------KNYQLWHHR---------- 124 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~-----~L~~l~~~~~~eL~~~~~~l~~~p------kn~~aW~hR---------- 124 (284)
++-+++..+||.++|++.+||..... +.+... -++++++.-+..+..+. ..+..|..|
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~-l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr 263 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEASTIVEAEE-LLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR 263 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHH-HHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence 46788999999999999999976544 122222 24445554444444332 112233222
Q ss_pred --HHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 125 --RWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 125 --~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
+.++.++|+ ..+|++.+..+++.+|. |...-.+..-++-.++.+.++-....+-=++.--...+|+|-..+|+-
T Consensus 264 RLAmCarklGr--~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 264 RLAMCARKLGR--LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHhCC--hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 345577898 99999999999998885 233333344445556677766555555322222345678887766542
Q ss_pred C--C-CC-------chhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 201 S--P-LL-------GGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 201 l--~-~~-------~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
- + +. ++...--..+++.+.+|++.||+-+.
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 1 1 00 01111124578899999999999765
No 198
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.25 E-value=0.011 Score=35.33 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk 152 (284)
.+|..+|.++..+|+ +++++.++.++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~--~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--YEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 456666666666666 66666666666666664
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.91 Score=40.95 Aligned_cols=138 Identities=9% Similarity=0.053 Sum_probs=91.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
.++.+++|+..+.....+ ++---.-.|+.++.+ .+-+.+-+.++..++-.-.-.-.--.|+-.--|.+.+.++.
T Consensus 120 ~~~~~deAl~~~~~~~~l-----E~~Al~VqI~lk~~r-~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGENL-----EAAALNVQILLKMHR-FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred cCCChHHHHHHHhccchH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 345556666666552222 222222223333332 33344444444444433222222233444444544588999
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
-.|..+-++-|.+.-.-++..-+-..+++|++|......+|..++++..+..+.-.+-..+|..
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999987776666664
No 200
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.095 Score=48.46 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=86.9
Q ss_pred cHHHHHHHH--HHHHHhhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh
Q 023284 82 NYTVWHFRR--QIIETLHTDLQDELAFVGRIAKSNSK----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH 155 (284)
Q Consensus 82 ~~~aW~~R~--~~L~~l~~~~~~eL~~~~~~l~~~pk----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~ 155 (284)
+-.|-+||. .-...-. .|..|..+|.+.|...-. |...+++|..+-..+|+ +..+|..|.+++.++|.+.-
T Consensus 78 ~E~Aen~KeeGN~~fK~K-ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--yRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEK-RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--YRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHHHHHHhHHHHHhh-hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhcCcchhh
Confidence 345666663 3333333 488888888888876543 34557788888888888 99999999999999999999
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
|...-+-++..|.++.+++.+++..+.++..+-.+-..+..
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l 195 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNL 195 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Confidence 99888889999999999999999999888888877665533
No 201
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.97 E-value=0.47 Score=43.90 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=99.3
Q ss_pred eecChhHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDE------------RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGR 109 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~------------~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~ 109 (284)
+.=+|+..++|--+-.+..+.- ..+.-|.++++||+.||++...|..+-.+...+. +-++-.+-.++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~-~~~~l~~~we~ 90 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW-DSEKLAKKWEE 90 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 4457888999887765544321 1257789999999999999999988777777766 46677788899
Q ss_pred HHHhCCCChHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHh----CcCC--------------hhHHhHHHHHHHHccCc
Q 023284 110 IAKSNSKNYQLWHHRR-WVAEKLGTGAVNKELQFTKKMLSL----DAKN--------------YHAWSYRQWVLQALGGW 170 (284)
Q Consensus 110 ~l~~~pkn~~aW~hR~-~ll~~l~~~~~~eel~~~~~aL~~----dpkN--------------~~AW~~r~~vl~~l~~~ 170 (284)
++..+|.++..|...- +.....+.-.+.+-+..|.++|.. .... ..........+.+.|-.
T Consensus 91 ~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 91 LLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 9999999999997653 333334332245555555555542 1111 11223333445677888
Q ss_pred HHHHHHHHHHHhccCCCh
Q 023284 171 EDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 171 ~eeL~~~~~~l~~dp~n~ 188 (284)
+.|+..++-.|+.+..-.
T Consensus 171 E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 171 ERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 999999999999986433
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.23 Score=44.80 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHhCcCChhHHhHHHHHHHHc--cCcH
Q 023284 99 DLQDELAFVGRIAKSN-SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM----LSLDAKNYHAWSYRQWVLQAL--GGWE 171 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~-pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a----L~~dpkN~~AW~~r~~vl~~l--~~~~ 171 (284)
.+.=.++.+.+++..+ |..++.-.-.|-+-.+.|+ .+.+-..++++ =.++.--..--.+|...+-.+ +++.
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--IKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 4667888999999998 5666666666777778887 55555555522 233333333344444444444 4789
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHccCCccCCC
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN---ESPWRYLRGLYKDDTESWIN 248 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n---esaW~y~~~ll~~~~~~~~~ 248 (284)
+|...+++.+..||+|.-|-|+++.++.-+++. ..++...+.++...|.. +|.-..++.+++-.=..-.+
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-------~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~ 342 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-------KDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQ 342 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHH-------HHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999888874 56788888899999974 56666666666532111222
Q ss_pred ChhhHHHHHhhhhcccccccc
Q 023284 249 DPRMLLSVFESFEYQKQLCFC 269 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ 269 (284)
...++.-....-+++++-+=|
T Consensus 343 ~k~~l~~~ia~~~~d~f~~~c 363 (366)
T KOG2796|consen 343 KKQALLEAVAGKEGDSFNTQC 363 (366)
T ss_pred HHHHHHHHHhccCCCcccchh
Confidence 334454444455666655544
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.72 Score=43.30 Aligned_cols=61 Identities=5% Similarity=-0.051 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 170 WEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 170 ~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
|++|++.|.+.+..+|.....=.|.+.+..++.-++ -.-+....-++..|+..-+-|.+..
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd-------vsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD-------VSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh-------hHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 466666666666666665554445555555554331 1122233344455655555444443
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.1 Score=46.55 Aligned_cols=62 Identities=18% Similarity=-0.002 Sum_probs=52.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW 191 (284)
+...|. +-+.++-|+.+|..+|.|..|.+.|+-+-...-+.++|-+-+.++|+.||.-.|+-
T Consensus 240 ~L~~~e--~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 240 LLKKEE--YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 334455 88899999999999999999999999887766667889999999999999887764
No 205
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.85 E-value=0.96 Score=41.88 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=82.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhh-----------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHH
Q 023284 70 QLTKEAICLNPGNYTVWHFRRQIIETLH-----------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNK 138 (284)
Q Consensus 70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~-----------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~e 138 (284)
.-+++.++-+|.+..+|.---..-..+. ...+..|..+++||+.||.+...|...--+..++.. .++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~--~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD--SEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--HHH
Confidence 3467788999999999975544433321 125788999999999999999999888777777765 666
Q ss_pred HHHHHHHHHHhCcCChhHHhHHH-HHHHHccCc--HHHHHHHHHHHhc
Q 023284 139 ELQFTKKMLSLDAKNYHAWSYRQ-WVLQALGGW--EDELDYCQMLLGE 183 (284)
Q Consensus 139 el~~~~~aL~~dpkN~~AW~~r~-~vl~~l~~~--~eeL~~~~~~l~~ 183 (284)
-.+-.++++..+|.++..|-..- +....+..+ ++-+..|.++|..
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 77889999999999999997653 444445543 4445555555443
No 206
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=0.82 Score=44.41 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
..+|-..++.||..+..+.+.|..-..+=.... ....|-+..++++.+-|.--+.|+--..+-..||+ ...+-..++
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN--i~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN--IAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--cHHHHHHHH
Confidence 368999999999999999999987666655544 47899999999999999999999888888888998 899999999
Q ss_pred HHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
+.++-.|. -.||.--...=.+.+.++.|-+.|++.+-.+|. .++|.
T Consensus 166 rW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi 211 (677)
T KOG1915|consen 166 RWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI 211 (677)
T ss_pred HHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH
Confidence 99999985 457765444434455678888899999999876 35554
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.63 E-value=0.69 Score=41.89 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
-+|..-...+...+. .+.+-..|.+++...+-++++|..-+.+-.+.+++ ...|...++.+++..|.+...|.+=...
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d-~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD-PKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 367666666666663 88899999999976677899998877776666542 5569999999999999999999988888
Q ss_pred HHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHH--HhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 164 LQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
+..+++.+.+-..+++++..-|... +--.+..++ =.+.|.. +.-.....++.+..|++.+.+.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-------~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-------ESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-------HHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHhhhhhHHHHH
Confidence 8889999999999999999987776 322222232 1223432 33334555666777776665543
No 208
>PRK10941 hypothetical protein; Provisional
Probab=95.57 E-value=0.12 Score=46.76 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
++.++.+++.++.++|.+..-|--||.++.+++.+..|+.-++..|+..|.+..+-.-|..
T Consensus 197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988655443
No 209
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.57 E-value=0.0059 Score=56.37 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHHHhh-hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284 89 RRQIIETLH-TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 89 R~~~L~~l~-~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l 167 (284)
|....+.++ ..+.++++.+..+|.++|.+......|+-++.+|++ ...++.-|+.+++++|......-.|+.+-.-+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--p~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--PNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccC--CchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 344444443 147899999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhccCC-ChHHHH
Q 023284 168 GGWEDELDYCQMLLGEDIF-NNSAWN 192 (284)
Q Consensus 168 ~~~~eeL~~~~~~l~~dp~-n~sAW~ 192 (284)
|.|++|-..+..++++|-+ .+++|.
T Consensus 196 g~~e~aa~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYDEANSATL 221 (377)
T ss_pred hchHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999865 457774
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.49 E-value=0.6 Score=42.22 Aligned_cols=186 Identities=10% Similarity=0.137 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHhCCC----cH--HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-
Q 023284 45 KPEFSETMSYFR---AVYYSDERSSRSFQLTKEAICLNPG----NY--TVWHFRRQIIETLHTDLQDELAFVGRIAKSN- 114 (284)
Q Consensus 45 ~p~~~~a~~~~r---~~~~~~~~s~~aL~~~~~~L~lnP~----~~--~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~- 114 (284)
.|++.+|...|. ..+...+..++|.++|.++....-+ +. .++..-+.++... +.++++.++++++.+.
T Consensus 28 ~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 28 KPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Confidence 478888776664 3555677889999999887654421 22 2222333344433 5889999999998753
Q ss_pred -CCChH----HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284 115 -SKNYQ----LWHHRRWVAEKL-GTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLG 182 (284)
Q Consensus 115 -pkn~~----aW~hR~~ll~~l-~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~ 182 (284)
..++. +...-+.++... |+ +++++++|.++++....+- .+....+.+...+++|++|++.+++.+.
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222 233334555555 66 9999999999998743332 2344456677888999999999999998
Q ss_pred ccCCCh-HHHHHHHHHHh------cCCCCchhhhhHHHHHHHHHHHHhcCCCCccH--HHHHHHHHcc
Q 023284 183 EDIFNN-SAWNQRYFVVT------RSPLLGGLIAMRDSEVNFTIEAILGNPENESP--WRYLRGLYKD 241 (284)
Q Consensus 183 ~dp~n~-sAW~~r~~ll~------~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa--W~y~~~ll~~ 241 (284)
...++. .-+..+...|. ..+.. -.+-..+++....+|+-.+. ...+..|+..
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~-------v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDY-------VAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-H-------HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 765443 23433332221 22321 23445566666678866543 3344555554
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.63 Score=42.76 Aligned_cols=151 Identities=12% Similarity=0.022 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
..+..+|+++..--.+-+|++-.+....|.|..... ++..+-+|++++-...|+-.+--.+-..-|.+.+. +.++|.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i--~ADALr 99 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI--YADALR 99 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc--cHHHHH
Confidence 445688999999999999999999999999999988 59999999999999999987766555555544444 333332
Q ss_pred H------------------------------HHHHHHhCc--CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 142 F------------------------------TKKMLSLDA--KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 142 ~------------------------------~~~aL~~dp--kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
. +...++.-| .....-.+-|-++.+-|.+++|+.-++.+++.---+.-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 2 334444445 23344555666666667788888888888887655554
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
.-++...+..+-+. +..+++++.++|
T Consensus 180 lAYniALaHy~~~q-------yasALk~iSEIi 205 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQ-------YASALKHISEII 205 (459)
T ss_pred hHHHHHHHHHhhhh-------HHHHHHHHHHHH
Confidence 44444444433333 244555555544
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.35 E-value=0.58 Score=48.31 Aligned_cols=132 Identities=6% Similarity=0.008 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
.+|++..+++++..|+-.-|-..++.++.++|+ ..+++.+++..-..-+.+-....--..+++.+++ +++++.+|++
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~--~d~~~~~Ye~ 102 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK--LDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh--hhHHHHHHHH
Confidence 589999999999999999999999999999995 8899999988877777888888888899999999 9999999999
Q ss_pred HHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhcC
Q 023284 146 MLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTRS 201 (284)
Q Consensus 146 aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~l 201 (284)
++..+|+ .+--.|.-.+.-+-+.|.+--..--++-+.-|.+. .-|+--..++...
T Consensus 103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 9999999 88887776666665555332222222233556654 4465555555443
No 213
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.081 Score=48.88 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=85.9
Q ss_pred HHHHHH--HHHHhcCCCCHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 50 ETMSYF--RAVYYSDERSSRSFQLTKEAICLNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 50 ~a~~~~--r~~~~~~~~s~~aL~~~~~~L~lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
.|-++. |.-+.+-.++..|..+|++.|+.+..+. ..+++|..+-..+| +|..+|+-+.+++.++|++.-+...
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-NYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCcchhhhhhh
Confidence 455554 4455556667889999999999877654 66788999999999 6999999999999999999999877
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
-..++..|.+ +.+++..|+..+.+|-.+-.+-.-
T Consensus 159 ~Akc~~eLe~--~~~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 159 GAKCLLELER--FAEAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred hhHHHHHHHH--HHHHHHHHhhhhhhhHHHHHHHHH
Confidence 7888888887 888999998888777665544433
No 214
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.49 Score=46.81 Aligned_cols=124 Identities=14% Similarity=0.044 Sum_probs=98.2
Q ss_pred eeecChhHHHH-HHHHHHHHhc-CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284 41 PIAYKPEFSET-MSYFRAVYYS-DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY 118 (284)
Q Consensus 41 ~I~~~p~~~~a-~~~~r~~~~~-~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~ 118 (284)
-|.++|...+. ...++.++.. .+.+..++-....+++.||.+..+....+..+...|........+...+....|+|.
T Consensus 57 ~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 57 GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence 34477777776 3344555544 577778888999999999999999999999998877656677777788999999999
Q ss_pred HHHHHH------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284 119 QLWHHR------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 119 ~aW~hR------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
+.-.|+ +.++..+|+ ..++.....++..+.|+|.+.-.+-.+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 137 EFLGHLIRFYQLGRYLKLLGR--TAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHHhhHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 999999 777777777 8888889999999999997776666555433
No 215
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.89 Score=42.71 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=100.5
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----
Q 023284 59 YYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT----- 133 (284)
Q Consensus 59 ~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~----- 133 (284)
....+.+++|++.++.+....-.+...|.+...+...||. |.++- .+...-||++..=.-.--+-.++++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~-Y~eA~----~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ-YIEAK----SIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH-HHHHH----HHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 3456677899999999999888899999999999999994 76663 3445556665331111111111221
Q ss_pred -----------------------CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284 134 -----------------------GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 134 -----------------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
--++++++.|.++|.-+|.-...=.|.+.++.++.-++-+-+...-.+...|+..-|
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 128899999999998888766667788999999998888888899999999999888
Q ss_pred HHHHHHHHhc
Q 023284 191 WNQRYFVVTR 200 (284)
Q Consensus 191 W~~r~~ll~~ 200 (284)
-+-+.-.+.+
T Consensus 222 ~NLkacn~fR 231 (557)
T KOG3785|consen 222 KNLKACNLFR 231 (557)
T ss_pred HHHHHHHHhh
Confidence 8877554443
No 216
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.10 E-value=0.085 Score=48.43 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=81.4
Q ss_pred hccccccCCCCCCCCCccccCCCCCCCCccee--ecChhH-HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCCcHHH
Q 023284 11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPI--AYKPEF-SETMSYFRAVYY--SDERSSRSFQLTKEAICLNPGNYTV 85 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I--~~~p~~-~~a~~~~r~~~~--~~~~s~~aL~~~~~~L~lnP~~~~a 85 (284)
..+.|.|++.. +-.-+.|+.+.....|+-+- +-.|.- .+|....++... +.+..++|..+++.++.+.|.+.++
T Consensus 74 ~~~~ya~~~~~-~~~~~~~~yd~~~~~~v~at~te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~ 152 (472)
T KOG3824|consen 74 SPEKYAPAVQK-PTFLVDPIYDEQTAVPVMSTQTENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI 152 (472)
T ss_pred ChhhccccccC-chhhccchhccccccccchhhcccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH
Confidence 45677777753 33456677665443343222 222222 345444444332 3455689999999999999999999
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284 86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127 (284)
Q Consensus 86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l 127 (284)
..--|.+.+.-. ++-++=.||-++|.++|.|..|..+|...
T Consensus 153 L~e~G~f~E~~~-~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 153 LIEMGQFREMHN-EIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHhHHHHhhh-hhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 999999888765 67889999999999999999999988644
No 217
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.97 E-value=2.6 Score=44.04 Aligned_cols=156 Identities=11% Similarity=0.018 Sum_probs=103.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC----h--HHHHHHHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNY-----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----Y--QLWHHRRW 126 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----~--~aW~hR~~ 126 (284)
+....+..++|...++.++...|... .+.+..+.++...| ++++++..+++++....+. . .+....+.
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 33445667899999999998655532 34566677777777 6899999999998653321 1 23345567
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCcC--------ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC-----hHHHHH
Q 023284 127 VAEKLGTGAVNKELQFTKKMLSLDAK--------NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN-----NSAWNQ 193 (284)
Q Consensus 127 ll~~l~~~~~~eel~~~~~aL~~dpk--------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n-----~sAW~~ 193 (284)
++...|+ +.++...+.+++.+-.. ....+..++.++...|++++|.+.+.+++...... ..++..
T Consensus 540 ~~~~~G~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 540 ILFAQGF--LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHCCC--HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 7777888 99999999998885222 12234456777788899999999999998864321 233334
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAIL 223 (284)
Q Consensus 194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~ 223 (284)
++.+....+++ +++.+.+.+++.
T Consensus 618 la~~~~~~G~~-------~~A~~~l~~a~~ 640 (903)
T PRK04841 618 LAKISLARGDL-------DNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHcCCH-------HHHHHHHHHHHH
Confidence 45555555654 444455555543
No 218
>PRK10941 hypothetical protein; Provisional
Probab=94.85 E-value=0.24 Score=44.82 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
+++.+|.+.+.++..+|++..-|.-||.++.++|. +..|+..++..++..|.+..+=.-
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--EHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHhCCCchhHHHH
Confidence 35555555555555566555555555555555555 555555555555555555544433
No 219
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.25 Score=44.06 Aligned_cols=108 Identities=15% Similarity=0.001 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------HHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKM------------------LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~a------------------L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
...+.+.+|.-+.+.|+ +.+|..+|..| +++|..+.....+-..++-..+.|-+.++-+.
T Consensus 177 av~~l~q~GN~lfk~~~--ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGR--YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhHHHHHhhhhhhhhcc--HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34455667777777777 66666555544 34455555555555556666678889999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR 233 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~ 233 (284)
..|..+|+|.-|++-|+.+....-+ ..++-+-+.++|+++|.-.|+-.
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn-------~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWN-------EAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcC-------HHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999876544333 24566677899999998887653
No 220
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=1.3 Score=43.05 Aligned_cols=150 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.-++..|..|--+...|..-+..=...+ ++..|-..++++|..+..|...|.--.-.-.+-.. ...|-...++|+.+
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--VNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--HhHHHHHHHHHHHh
Confidence 4466788888888999987777766666 58999999999999999999999766555444444 88999999999999
Q ss_pred CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH-HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284 150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN-QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~-~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
=|+--.-|+--...=..+|+...+-+.++++++-.|.-. ||+ +-.+=+..- . .+.+-..+.+.+..+|+
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRyk-e-------ieraR~IYerfV~~HP~- 206 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYK-E-------IERARSIYERFVLVHPK- 206 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhh-H-------HHHHHHHHHHHheeccc-
Confidence 999999999877777889999999999999999999864 565 333333211 1 13344455566666666
Q ss_pred ccHH
Q 023284 229 ESPW 232 (284)
Q Consensus 229 esaW 232 (284)
.+.|
T Consensus 207 v~~w 210 (677)
T KOG1915|consen 207 VSNW 210 (677)
T ss_pred HHHH
Confidence 3444
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.43 Score=44.47 Aligned_cols=103 Identities=11% Similarity=0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH----HHHHHHccCcHHHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR----QWVLQALGGWEDELD 175 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r----~~vl~~l~~~~eeL~ 175 (284)
.-++-...+++|...|++--+|....-+...+|+ ...-...+++++-.=.-+..+.+|. ++.+..+|-|++|-+
T Consensus 119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 3344445588889999999998888888888887 6677777777776622333334443 455677788888888
Q ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
..++++++|+.+.-|-+-+..++..-++.
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 88999999998888888888888766554
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.38 E-value=0.076 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
+|..++.++..+++++++..++.++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555666666666666666666655554
No 223
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.13 E-value=0.18 Score=33.97 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
+-++.+....++|+|++|+.+++.+|+++|+|..|-.-+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 345666677788888888888888888888888776555443
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=1.7 Score=39.04 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHh
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKL 131 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l 131 (284)
++.++. ...|.+.|..-|+..|++. .|.++.|.++...| +++++...|..+.+..|++. .+..--+.++..+
T Consensus 151 ~~ksgd-y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGD-YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCC-HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 345555 5788888888898888765 67788888888888 68888888888888766554 5566667777777
Q ss_pred CCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 132 GTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
|+ .++|...+.++++..|..-.|=
T Consensus 229 ~~--~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 229 GN--TDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred cC--HHHHHHHHHHHHHHCCCCHHHH
Confidence 77 7777777777777777766553
No 225
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.76 E-value=0.83 Score=44.50 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM 146 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a 146 (284)
+-..+|..|+...+.+...|..--...+..+ .+.+--+.|..+|..+|+++..|-+-..-....+.. .+.+-+.+.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~-~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKK-TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHH
Confidence 5666777777777777777765544444444 255666677777777777777776665444444432 56667777777
Q ss_pred HHhCcCChhHHh
Q 023284 147 LSLDAKNYHAWS 158 (284)
Q Consensus 147 L~~dpkN~~AW~ 158 (284)
|..+|.+...|.
T Consensus 167 LR~npdsp~Lw~ 178 (568)
T KOG2396|consen 167 LRFNPDSPKLWK 178 (568)
T ss_pred hhcCCCChHHHH
Confidence 777777777664
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.75 E-value=0.11 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l 181 (284)
||.+.|.+....|+|++|+++++++|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.70 E-value=0.11 Score=30.34 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 156 AWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 156 AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
|.++.+.+....|++++|++.++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555566666666666666666554
No 228
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.66 E-value=5.3 Score=41.79 Aligned_cols=157 Identities=11% Similarity=-0.027 Sum_probs=101.2
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCC-----c----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh-----HHHHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPG-----N----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY-----QLWHH 123 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~-----~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~-----~aW~h 123 (284)
+....++.+++......+...-+. . ..+-..++.+....| +++++...++.++...|... .+...
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 333455667888888877654332 1 122223444444556 68999999999998655432 24556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCC----h--hHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--------ChH
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKN----Y--HAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--------NNS 189 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN----~--~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--------n~s 189 (284)
.+.++...|+ ++++...+.+++...... . .+....+.+....|++++|...+.+++..-.. ...
T Consensus 497 lg~~~~~~G~--~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 497 LGEVHHCKGE--LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 6777777888 999999999999754321 1 23445677778889999999999998885221 122
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
++..++.++...|+. +++.+.+.+++..
T Consensus 575 ~~~~la~~~~~~G~~-------~~A~~~~~~al~~ 602 (903)
T PRK04841 575 LLRIRAQLLWEWARL-------DEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHhcCH-------HHHHHHHHHhHHh
Confidence 344556666666764 5556666666554
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.47 E-value=1.8 Score=42.33 Aligned_cols=104 Identities=11% Similarity=0.147 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--cCC--hhHHhHHHHHHHHccCcHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD--AKN--YHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d--pkN--~~AW~~r~~vl~~l~~~~eeL 174 (284)
+.+.+.+.++......|++.---..+|.+....|+ ++++++.+++++... -+- .-+++-++|+...+.+|++|.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 56778888999999999999888899999999999 999999999988421 111 234555788888889999999
Q ss_pred HHHHHHHhccCCChHHHHHH-HHHHhcCCCC
Q 023284 175 DYCQMLLGEDIFNNSAWNQR-YFVVTRSPLL 204 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r-~~ll~~l~~~ 204 (284)
+++.+.++.+.-....+.|. +.++..+++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999765544444444 4445555554
No 230
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=6 Score=35.81 Aligned_cols=174 Identities=13% Similarity=-0.008 Sum_probs=116.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.+++.++.-.-..-..|.-.+.++..-+.+++++++.+..... -.+-.-.-.|+.++.+ .+-+..-+.++.++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-----lE~~Al~VqI~lk~~r--~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-----LEAAALNVQILLKMHR--FDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHcc
Confidence 3456666666666677777777666656678888887766433 3333334445556655 67777777788777
Q ss_pred CcCChhHHhHHHHHHHHc--cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284 150 DAKNYHAWSYRQWVLQAL--GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 150 dpkN~~AW~~r~~vl~~l--~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ 227 (284)
|-.-.-.=.--.|+--.- +...+|+-.|+.+-+..|.+.-..+....+...++++ +++......+|..+|+
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-------eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-------EEAESLLEEALDKDAK 239 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-------HHHHHHHHHHHhccCC
Confidence 765432212223332222 3578999999999999999999999998888888885 7788888999999999
Q ss_pred CccHHHHHHHHHccCCccCCCChhhHHHHH
Q 023284 228 NESPWRYLRGLYKDDTESWINDPRMLLSVF 257 (284)
Q Consensus 228 nesaW~y~~~ll~~~~~~~~~~~~~~~~~~ 257 (284)
++..-..+..+....|.+-......+++.+
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 998776666555555444333334444443
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.31 E-value=0.33 Score=47.59 Aligned_cols=89 Identities=15% Similarity=0.012 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
...++..+.+++...|...-..-.|..++.+-+- ...-.||..|-.++++||....||++..-++..++++.+|++|-.
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 4567777777777778777777777666654321 115567777778888888888888888888888888888888877
Q ss_pred HHHhccCCCh
Q 023284 179 MLLGEDIFNN 188 (284)
Q Consensus 179 ~~l~~dp~n~ 188 (284)
.+....|.|.
T Consensus 470 alq~~~Ptd~ 479 (758)
T KOG1310|consen 470 ALQMSFPTDV 479 (758)
T ss_pred HHhhcCchhh
Confidence 7777777664
No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.31 E-value=0.2 Score=27.59 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk 152 (284)
+|..++.++..+++ ++++..++.++++++|.
T Consensus 3 ~~~~~a~~~~~~~~--~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGD--YDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHccCCC
Confidence 45555555555555 55666666666555553
No 233
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.27 E-value=4.8 Score=38.14 Aligned_cols=131 Identities=10% Similarity=0.016 Sum_probs=91.8
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
.++-+|.-..+. ..-+..+| +.++|.+.+..+++..-..- -...+..+.......-++..+++++.+|.+.
T Consensus 258 ~lr~~p~l~~~~---a~~li~l~-~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 258 KLRNDPELVVAY---AERLIRLG-DHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HhhcChhHHHHH---HHHHHHcC-ChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 444455544433 23345566 57788888888887653332 1222233322226677788899999999999
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el 215 (284)
..+...|.+..+-+.|.+|-++++.+|..-|+. +.|..++.++.++|....+....++++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999998889999999999999988876 458888999998887655555556555
No 234
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.16 E-value=0.52 Score=46.27 Aligned_cols=107 Identities=12% Similarity=-0.017 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCC
Q 023284 46 PEFSETMSYFRAVYYSDE--RS----SRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~--~s----~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn 117 (284)
|.+++..-+.......+. .. ..|+..+..+++.-|......-.|..++..-+ .+.-.||.-+..++.+||-.
T Consensus 365 ~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 365 PRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred cchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 456666666666665432 22 36899999999999999999999988887643 14457899999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
..||++....|..+++ +.++++|-..+....|.+.
T Consensus 445 ~kah~~la~aL~el~r--~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 445 QKAHFRLARALNELTR--YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHHHHhh--HHHhhhhHHHHhhcCchhh
Confidence 9999999999999999 9999999999888888765
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.04 E-value=6.9 Score=35.67 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=81.2
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH-hCCCC
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG----NYTVWHFRRQIIETLHTDLQDELAFVGRIAK-SNSKN 117 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~----~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~-~~pkn 117 (284)
....+....|..+..+..+.+..+-|......+...++. ...+-.-+..++-..| .-.+++..++..+. ...+.
T Consensus 140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g-~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG-EQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhc
Confidence 345566678888888888888888999999998887633 2344444566666666 35677777766666 11111
Q ss_pred ---------------------------------hHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284 118 ---------------------------------YQLWHHRRWVAEKL----GTGAVNKELQFTKKMLSLDAKNYHAWSYR 160 (284)
Q Consensus 118 ---------------------------------~~aW~hR~~ll~~l----~~~~~~eel~~~~~aL~~dpkN~~AW~~r 160 (284)
..++..++.....+ +....++.+..+..+++.+|.++.+|++-
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 12344444444444 22337778888888888888888888887
Q ss_pred HHHHHHc
Q 023284 161 QWVLQAL 167 (284)
Q Consensus 161 ~~vl~~l 167 (284)
+.....+
T Consensus 299 a~~~~~~ 305 (352)
T PF02259_consen 299 ALFNDKL 305 (352)
T ss_pred HHHHHHH
Confidence 7666544
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=2.7 Score=37.84 Aligned_cols=94 Identities=11% Similarity=-0.031 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHHHHHHHHccCcHH
Q 023284 99 DLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYRQWVLQALGGWED 172 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r~~vl~~l~~~~e 172 (284)
+|.+|..-|..-+...|++. .|.+..|.++...|+ ++++...|..+.+..|++. .+..-.+.++..++.-++
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--YEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--chHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 58999999999999998765 667777888888898 9999999999999877665 668899999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHH
Q 023284 173 ELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 173 eL~~~~~~l~~dp~n~sAW~~r 194 (284)
|...+.++++..|....|=.-+
T Consensus 234 A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 234 ACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999998875544
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.01 E-value=0.69 Score=45.06 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=77.2
Q ss_pred hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhCcC------ChhHHhH-----
Q 023284 98 TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKML-------SLDAK------NYHAWSY----- 159 (284)
Q Consensus 98 ~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL-------~~dpk------N~~AW~~----- 159 (284)
++.++-++.-.++|+++|.+..||.-... -......++.+++.+++ ..+.. .+..|..
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE----EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE----EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc----ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 45778888999999999999999843221 00011344444444443 33321 1122222
Q ss_pred -------HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHHHHHhcCCCC-
Q 023284 160 -------RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR---SPLLGGLIAMRDSEVNFTIEAILGNPEN- 228 (284)
Q Consensus 160 -------r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~---l~~~~~~~~~~~~el~~~~~~i~~~P~n- 228 (284)
.+.+..++|+..||++.+..+++.+|. .+..+-|..++.. ++++. -++..|..+.+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-~~~l~IrenLie~LLelq~Ya-----------d~q~lL~kYdDi~ 325 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-LDNLNIRENLIEALLELQAYA-----------DVQALLAKYDDIS 325 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-cchhhHHHHHHHHHHhcCCHH-----------HHHHHHHHhcccc
Confidence 245678899999999999999999884 2344445444443 44442 233444455432
Q ss_pred ---ccHHHHHHHHHcc
Q 023284 229 ---ESPWRYLRGLYKD 241 (284)
Q Consensus 229 ---esaW~y~~~ll~~ 241 (284)
..+|.|-+.++..
T Consensus 326 lpkSAti~YTaALLka 341 (539)
T PF04184_consen 326 LPKSATICYTAALLKA 341 (539)
T ss_pred CCchHHHHHHHHHHHH
Confidence 4689998888763
No 238
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.98 E-value=1.4 Score=42.92 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-cHHHHHHHHHH
Q 023284 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-WEDELDYCQML 180 (284)
Q Consensus 102 ~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-~~eeL~~~~~~ 180 (284)
.-+..+..++...+.+...|..-....++.+. +.+--..|.++|.+||+|...|.+-+.-....+. .+.+-+.+.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 44455555666666666666554444444433 4444455666666666666666665544444443 45555666666
Q ss_pred HhccCCChHHHH
Q 023284 181 LGEDIFNNSAWN 192 (284)
Q Consensus 181 l~~dp~n~sAW~ 192 (284)
|+.||++...|.
T Consensus 167 LR~npdsp~Lw~ 178 (568)
T KOG2396|consen 167 LRFNPDSPKLWK 178 (568)
T ss_pred hhcCCCChHHHH
Confidence 666666665554
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.78 E-value=2.2 Score=34.08 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI 110 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~ 110 (284)
..+..+...........+..++|+..+..++.++|-+-.+|...-.++...| +..++++.|+++
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQG-RRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 3344444444444444556677777777777777777777777777777777 466777766643
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.66 E-value=4.9 Score=35.99 Aligned_cols=110 Identities=7% Similarity=-0.020 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH-----HHHHccCcHHHHHHHHHHHhccCCChHH-
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW-----VLQALGGWEDELDYCQMLLGEDIFNNSA- 190 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~-----vl~~l~~~~eeL~~~~~~l~~dp~n~sA- 190 (284)
...-|+..|....+-|+ +.+|...++.+...+|-...+ .+.. +..+-+.+++|+..+++.|.++|.+..+
T Consensus 33 p~~~LY~~g~~~L~~gn--~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGN--YEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 45667777777777777 999999999999888876654 3333 3345567899999999999999987754
Q ss_pred --HHHHHHHHh-cCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 191 --WNQRYFVVT-RSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 191 --W~~r~~ll~-~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
.+-+|.... .............+++..+.+.|...|+.+-
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 333333311 1222111112235678888999999998764
No 241
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.65 E-value=0.24 Score=45.58 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~ 161 (284)
.+++...++.++.+.|.+.++...-|.....-+. +-++=.||-++|.++|.|-.|..+|.
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--IVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--hHhhhhhhheeeeeCCCchHHHhhhh
Confidence 5566666666666666666666655555554443 55555666666666666666666654
No 242
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.58 E-value=13 Score=37.69 Aligned_cols=222 Identities=15% Similarity=0.130 Sum_probs=137.5
Q ss_pred eecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHH----HHHHHHHhh---hCHHHHHHHHHHHHHh
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHF----RRQIIETLH---TDLQDELAFVGRIAKS 113 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~----R~~~L~~l~---~~~~~eL~~~~~~l~~ 113 (284)
|.=||-....|..+-.. +.+.. .+-.-+|+++++.-|.+|..|+. |+....++- ..++.--.|+++++..
T Consensus 20 ilRnp~svk~W~RYIe~--k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~ 97 (835)
T KOG2047|consen 20 ILRNPFSVKCWLRYIEH--KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVF 97 (835)
T ss_pred HHcCchhHHHHHHHHHH--HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Confidence 44566666667655332 23333 56777999999999999999984 333344332 2366677899999998
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh--HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284 114 NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH--AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191 (284)
Q Consensus 114 ~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~--AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW 191 (284)
-.|-+.+|.--..++..-|. ...--..++++|..=|.--| .|-----.+...+..+-++..+.+.|+.+|+...
T Consensus 98 mHkmpRIwl~Ylq~l~~Q~~--iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e-- 173 (835)
T KOG2047|consen 98 MHKMPRIWLDYLQFLIKQGL--ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE-- 173 (835)
T ss_pred HhcCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH--
Confidence 88999999888777777777 77788889999988776544 4544444556667788999999999999998632
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCC--ChhhHHHHHhhhhcccccccc
Q 023284 192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIN--DPRMLLSVFESFEYQKQLCFC 269 (284)
Q Consensus 192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 269 (284)
.|... |...++.+++...+..-+.-=...=+.-|.|...|.-+--++.+.+.-+-+ ...++.+-..-.--|=-+.||
T Consensus 174 eyie~-L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 EYIEY-LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHH-HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 33333 334444332211111111110111235677778998887777765443322 224444433322233334566
Q ss_pred c
Q 023284 270 S 270 (284)
Q Consensus 270 ~ 270 (284)
|
T Consensus 253 S 253 (835)
T KOG2047|consen 253 S 253 (835)
T ss_pred H
Confidence 5
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.26 E-value=1.1 Score=35.77 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
+...|+ +++++..+.+++..||-|-.+|.....++...|+..+|+..|.+.
T Consensus 72 ~~~~~~--~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 72 LLEAGD--YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHTT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344566 778888888888888888888888888888888887777776654
No 244
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.25 E-value=14 Score=37.40 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC------
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK------ 116 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk------ 116 (284)
...+.|..|+.++...+.-+.|-.+++++.+.+-+- ..+|..-+..=.... .++.|+++.+++... |+
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~-~~~~Al~lm~~A~~v-P~~~~~~~ 462 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE-NFEAALKLMRRATHV-PTNPELEY 462 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhcC-CCchhhhh
Confidence 345667777777777666677777777777766543 355544443222222 477788877776542 22
Q ss_pred -----ChHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 117 -----NYQLWHHR--------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 117 -----n~~aW~hR--------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
..|+=.|| .-+...+|- ++.--..|+++|.+.---...--+-+.+|..-.-++++...|++-|.+
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt--festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGT--FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 23444443 334445565 677777888888877776666666666666666678888888888877
Q ss_pred c--CCChHHHHHH-HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 184 D--IFNNSAWNQR-YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 184 d--p~n~sAW~~r-~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
. |.-+..|+-- -..+.+.|... ++++=+.++++|+..|...+
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~k-----lEraRdLFEqaL~~Cpp~~a 585 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTK-----LERARDLFEQALDGCPPEHA 585 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHhcCCHHHH
Confidence 5 5666778743 22333443321 35556667777777774443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=3.2 Score=38.84 Aligned_cols=114 Identities=10% Similarity=0.023 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-CCCChHHHHHHH---HHHHHhCCCCHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS-NSKNYQLWHHRR---WVAEKLGTGAVNK 138 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~-~pkn~~aW~hR~---~ll~~l~~~~~~e 138 (284)
+...+|-...+++|.-.|.+.-+|..--..-..+|. ...-...+++++-. ||.-+..=+-.| .-|..+|- +.+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~-~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~--y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN-QIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI--YDD 193 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc-hhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc--chh
Confidence 344567778899999999999999887777777773 45666677777766 444432222222 34455666 888
Q ss_pred HHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284 139 ELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM 179 (284)
Q Consensus 139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~ 179 (284)
+-+.-++++++++.+..|=+-+.-|++.-+++.++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 88888888888888877777777777777776666666543
No 246
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.11 E-value=0.41 Score=27.75 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284 85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSK 116 (284)
Q Consensus 85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk 116 (284)
|.+..+.+...+| ++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g-~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLG-DYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHHCcC
Confidence 3444445554444 355555555555555554
No 247
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.86 E-value=5.1 Score=43.73 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
+...+.+++|-+ +.+-|+++-....++..-+. ..+|.++++..++..-.-..+|.-.+..|.+-+. -+.+...+.+
T Consensus 1514 esl~kVFeRAcq-ycd~~~V~~~L~~iy~k~ek-~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1514 ESLKKVFERACQ-YCDAYTVHLKLLGIYEKSEK-NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--AEAARELLKR 1589 (1710)
T ss_pred HHHHHHHHHHHH-hcchHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--HHHHHHHHHH
Confidence 345567777766 45678888888888888774 7889999999998888888889877777666655 6778888999
Q ss_pred HHHhCcCChhHHhHHHH--HHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284 146 MLSLDAKNYHAWSYRQW--VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 146 aL~~dpkN~~AW~~r~~--vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el 215 (284)
||+.=|+.-|.=.-..+ +-.+.|+-+.....++..+..+|.-...|+-.--.-.+.+.....+.++++.+
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999995555444433 34566788888889999999999999999854333333333222333444444
No 248
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.83 E-value=2.3 Score=38.41 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=84.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhC---CCcH---HHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCCh------HHHHHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLN---PGNY---TVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKNY------QLWHHR 124 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~ln---P~~~---~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn~------~aW~hR 124 (284)
++.+. ..++|+.++.+++.+. .... .+....+.++... + ++++++++|.+++......- .+...-
T Consensus 84 ~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 84 CYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33334 5578999999988752 2222 3344445555555 5 69999999999988643222 223334
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-hHHhHH------HHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNY-HAWSYR------QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r------~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
+.+...+|+ ++++++.+++++...-.+. .-|+.+ +.+.-..|+...|-..+++....+|+..+.--++
T Consensus 162 A~l~~~l~~--y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 162 ADLYARLGR--YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHhCC--HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 556667788 9999999999998654332 223333 3334456788899999999999999877654443
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.09 E-value=3.4 Score=39.16 Aligned_cols=168 Identities=9% Similarity=0.075 Sum_probs=105.1
Q ss_pred CCCCCCCCCccccCCCCCCCCcceeecChh----HHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHhCCCcHHHHHHHHHH
Q 023284 18 LSQRPEWSDVTPIPQDDGPNPVVPIAYKPE----FSETMSYFRAVYYSDERSSRSFQLTKE-AICLNPGNYTVWHFRRQI 92 (284)
Q Consensus 18 ~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~----~~~a~~~~r~~~~~~~~s~~aL~~~~~-~L~lnP~~~~aW~~R~~~ 92 (284)
|++-++|+.+.-+-++-...|.|.+.-.+. |+-|.+.| .+.+..++|++.... +....+.+...+-..|++
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr----n~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR----NKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 788888887776665544445554443443 33344443 334556899999988 667778888999988888
Q ss_pred HHHhh--------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-----HHHHHh----CcCCh
Q 023284 93 IETLH--------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA-VNKELQFT-----KKMLSL----DAKNY 154 (284)
Q Consensus 93 L~~l~--------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~-~~eel~~~-----~~aL~~----dpkN~ 154 (284)
.+.+- ..+.+++..|.++...+|.-|..=|.- .++...|... -..++.-+ ..+.++ .-.+|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A-tLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dY 305 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA-TLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDY 305 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH-HHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccH
Confidence 87652 137899999999999997666554433 3444444311 11122211 122222 22444
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
+.-.-..-+---.++++++..+.++++...|. +|.-
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~l 341 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP---AWEL 341 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc---chhH
Confidence 44444444455578899999999999999765 6753
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.64 E-value=13 Score=33.83 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCC
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL-DAKN 153 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~-dpkN 153 (284)
.......|..-..+....| .++-+...+.++...++. ...+-..+.-++-..|+ ..+++..+...++. ..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g-~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAG-NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--QEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hhHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhhhc
Confidence 4444555555555555556 477888888888776532 23444445666666777 77888877777771 1111
Q ss_pred ---------------------------------hhHHhHHHHHHHHc------cCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 154 ---------------------------------YHAWSYRQWVLQAL------GGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 154 ---------------------------------~~AW~~r~~vl~~l------~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
..++..+|-..... +..++.+..+.++++.+|....+|++-
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 12333444444445 456778999999999999999999998
Q ss_pred HHHHhcCCCCc----------hhhhhHHHHHHHHHHHHhcCCC
Q 023284 195 YFVVTRSPLLG----------GLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 195 ~~ll~~l~~~~----------~~~~~~~~el~~~~~~i~~~P~ 227 (284)
+....++-... ........++.+|-+++...|+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 87665542111 1123345577888888877777
No 251
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.51 E-value=1.7 Score=40.15 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH-HHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY-RQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~-r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
+-+.....|.+...|..-..-..+.+. +.+--..|..+|+++|.|...|.+ -..=+.-.++.+.+...+.+.|+.+|
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~--y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKM--YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 344555667777777766555555554 666667888888888888888877 33445555677788888888888888
Q ss_pred CChHHHHH
Q 023284 186 FNNSAWNQ 193 (284)
Q Consensus 186 ~n~sAW~~ 193 (284)
++.-.|.-
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 88888863
No 252
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=3.9 Score=37.78 Aligned_cols=82 Identities=12% Similarity=0.098 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.++++++++..-.+.+||+-.+..-.|.++.+..+ +.++-+||++.....|+-..-=.|-+.-+.+-+.+.+||....
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 48899999999999999999999999999999887 9999999999999999987766666667777778888877665
Q ss_pred HHHh
Q 023284 179 MLLG 182 (284)
Q Consensus 179 ~~l~ 182 (284)
.+..
T Consensus 103 ~~~D 106 (459)
T KOG4340|consen 103 LLLD 106 (459)
T ss_pred HhcC
Confidence 5443
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.05 E-value=7.1 Score=38.15 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhCCCCHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----QLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
++|.++....+...|+..-....++++....| +.+++++.+++++....+-. -+.+-++|....+.+ ++++..
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~--w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD--WEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch--HHHHHH
Confidence 67889999999999999998899999998888 69999999998884222211 224456788888888 999999
Q ss_pred HHHHHHHhCcCChhHHhH--HHHHHHHccCc-------HHHHHHHHHHH
Q 023284 142 FTKKMLSLDAKNYHAWSY--RQWVLQALGGW-------EDELDYCQMLL 181 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~--r~~vl~~l~~~-------~eeL~~~~~~l 181 (284)
++.++++.+.- .+|+++ .+-++..+++. ++|.+.+.++-
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999985443 334333 34455666666 55555555443
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.05 E-value=0.5 Score=28.73 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
+|...+.++...|+ ++++++++.++|.+
T Consensus 1 al~~Lg~~~~~~g~--~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--YEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 35566666666766 77777777774443
No 255
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.80 E-value=2.2 Score=28.71 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=14.3
Q ss_pred HHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 94 ETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 94 ~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
..+| ++.+++.+++.+|+.+|.|-+|-.-+.
T Consensus 12 ykl~-~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 12 YKLG-EYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHTT--HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHhh-hHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3344 355555555555555555555544333
No 256
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.46 E-value=38 Score=37.44 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=90.6
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAIC-LNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK 116 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~-lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk 116 (284)
+.-+|+..-.|-.|-+...+..--++|-+..++||. +|+.-- -+|..--.+....| .-+.-.+.|++|.+. -.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqy-cd 1528 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQY-CD 1528 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHh-cc
Confidence 345666666665554544444444777777777774 566433 34443333333344 223334455555443 34
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
-|.+..+..-++....+ +++|.++++.+++.--.--..|...+..+.+-+.-+.|-....+|++--|+..
T Consensus 1529 ~~~V~~~L~~iy~k~ek--~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEK--NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred hHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 56777777777777777 78888888888888777778888777777766666667777788888777743
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=10 Score=34.69 Aligned_cols=119 Identities=19% Similarity=0.083 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH--HHH---HHHHHHHhCCCCH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL--WHH---RRWVAEKLGTGAV 136 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a--W~h---R~~ll~~l~~~~~ 136 (284)
.+...+|..++..++...|++..+-.-...++...| +.+.+... |...|-..+. |.- |-.++.+...
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-~~e~A~~i----L~~lP~~~~~~~~~~l~a~i~ll~qaa~--- 218 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG-DVEAAQAI----LAALPLQAQDKAAHGLQAQIELLEQAAA--- 218 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-ChHHHHHH----HHhCcccchhhHHHHHHHHHHHHHHHhc---
Confidence 455578999999999999999999999999999988 47666554 4444444332 222 3344444432
Q ss_pred HHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 137 NKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 137 ~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
..+..-+.+.+..||.|..+=+-.+..+...|+.++|++-.-.+++.|-...
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 2355667888899999999999999999999999999988888887775543
No 258
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.47 E-value=5.7 Score=31.01 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHhhh----------CHHHHHHHHHHHHHhCCCChHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWH---FRRQIIETLHT----------DLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~---~R~~~L~~l~~----------~~~~eL~~~~~~l~~~pkn~~a 120 (284)
.-+||++.+.++..++++..+|. ..|.++..+.. -+..+++++.++....|.....
T Consensus 12 hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 12 HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 36788888888888887775543 33455544431 1334555555555555555333
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.30 E-value=9.2 Score=34.25 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=59.3
Q ss_pred ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH---HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284 153 NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA---WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 153 N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA---W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne 229 (284)
-..-|+..|..--+-|+|++|...++.+...+|...-+ ..-.+.+..+-+. ++.++..+++.|+++|+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~-------y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE-------YDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHhCCCCC
Confidence 34678888888888999999999999999999987644 1112222233333 4778999999999999998
Q ss_pred c--HHHHHHHHH
Q 023284 230 S--PWRYLRGLY 239 (284)
Q Consensus 230 s--aW~y~~~ll 239 (284)
. --.|++|+.
T Consensus 106 n~dY~~YlkgLs 117 (254)
T COG4105 106 NADYAYYLKGLS 117 (254)
T ss_pred ChhHHHHHHHHH
Confidence 7 223666665
No 260
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.67 E-value=1.5 Score=40.47 Aligned_cols=86 Identities=8% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 71 LTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH-RRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 71 ~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h-R~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.+-++-...|.+.+.|..-.......+ .+.+--..|..+++.+|.|...|-+ -..=+...++ ++.+.+.+.+.|..
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k-~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~an--i~s~Ra~f~~glR~ 171 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKK-MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIAN--IESSRAMFLKGLRM 171 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhcc--HHHHHHHHHhhhcc
Confidence 344455567888888877766666666 4777777888888888888888876 3444445555 77788888888888
Q ss_pred CcCChhHHhH
Q 023284 150 DAKNYHAWSY 159 (284)
Q Consensus 150 dpkN~~AW~~ 159 (284)
+|++...|.-
T Consensus 172 N~~~p~iw~e 181 (435)
T COG5191 172 NSRSPRIWIE 181 (435)
T ss_pred CCCCchHHHH
Confidence 8888888853
No 261
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.32 E-value=5.6 Score=31.07 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=58.9
Q ss_pred hhhCHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHHhCCC---------CHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 96 LHTDLQDELAFVGRIAKSNSKNYQLWHH---RRWVAEKLGTG---------AVNKELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 96 l~~~~~~eL~~~~~~l~~~pkn~~aW~h---R~~ll~~l~~~---------~~~eel~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
-| +.-+||+.++.++..++++-.+|.+ .|.++..+... -+..+++++.++..+.|...+..+..+.=
T Consensus 9 rG-nhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 9 RG-NHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred cc-CHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 35 5778999999999999988877644 35666555421 15567888888888888876666665544
Q ss_pred HHHccCcHHHHHHHHHHHhc
Q 023284 164 LQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~ 183 (284)
+..-.-|++++.-+.++|.+
T Consensus 88 l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhhHHHHHHHHHHHHHHhcc
Confidence 44344466677666666654
No 262
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=3.8 Score=36.98 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
++.++.+.++.+.++|.+...|--||.++.+++.+.-|++.+...++.-|++..+-.-|..+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999999988877665543
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.88 E-value=29 Score=33.00 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHH---hhhCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCc
Q 023284 83 YTVWHFRRQIIET---LHTDLQDELAFVGR-IAKSNSKNYQLWHHRRWVAEKLG-------TGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 83 ~~aW~~R~~~L~~---l~~~~~~eL~~~~~-~l~~~pkn~~aW~hR~~ll~~l~-------~~~~~eel~~~~~aL~~dp 151 (284)
..+=+..+.+|.+ -| +.++|+..+.. +....+.+...+.-.|.+++.+- .+.+++++..|.++.+++|
T Consensus 179 ~~i~~~yafALnRrn~~g-dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPG-DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred hHHHHHHHHHHhhcccCC-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 3333444444444 34 56777777777 44566677777777676666541 1236777777777777776
Q ss_pred CChhHHhHHH
Q 023284 152 KNYHAWSYRQ 161 (284)
Q Consensus 152 kN~~AW~~r~ 161 (284)
.-|++-|.-.
T Consensus 258 ~~Y~GIN~At 267 (374)
T PF13281_consen 258 DYYSGINAAT 267 (374)
T ss_pred cccchHHHHH
Confidence 5555555543
No 264
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.44 E-value=4.8 Score=36.37 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~ 161 (284)
++.++.+.++++..+|++.--|.-||.++.++|- +.-|++.+...++.-|....|=.-|.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--YHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--chhhHHHHHHHHHhCCCchHHHHHHH
Confidence 5555555566666666665555556666665555 55555555555555555554444433
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.60 E-value=3.6 Score=30.69 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
..++-+.+.++.+|.|..+-+..+..+..-|++++|++-+-.++..++..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 35667788888888888888888888888888888888888888888776
No 266
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=84.40 E-value=9.7 Score=36.71 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=43.6
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhcc------CCChHHHHHHHHHHhcCCCCc-------------hhhhhHHHHHHH
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGED------IFNNSAWNQRYFVVTRSPLLG-------------GLIAMRDSEVNF 217 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~d------p~n~sAW~~r~~ll~~l~~~~-------------~~~~~~~~el~~ 217 (284)
=.+.|..+.-+|.|++|+-|+.+-|.+- +.-..|+++.|.+...-|+.- +...-++.++++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 3456778888888899988888776542 444567777777665433321 122335667777
Q ss_pred HHHHHhcC
Q 023284 218 TIEAILGN 225 (284)
Q Consensus 218 ~~~~i~~~ 225 (284)
|..-|++-
T Consensus 178 y~eNL~l~ 185 (639)
T KOG1130|consen 178 YMENLELS 185 (639)
T ss_pred HHHHHHHH
Confidence 77766543
No 267
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=25 Score=35.25 Aligned_cols=120 Identities=11% Similarity=-0.102 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHH--HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 68 SFQLTKEAICLNPGNYTVWHFR--RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 68 aL~~~~~~L~lnP~~~~aW~~R--~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
++..+..-+.++|.+.+...-. ...+..++. -..+.-....++..||.+..+-..-+..+...|. ...-...+...
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~ 127 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLAD-STLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEI 127 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccccc-chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 4445555556888888876544 333334453 3356666689999999999999999888887664 24455567777
Q ss_pred HHHhCcCChhHHhHH------HHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 146 MLSLDAKNYHAWSYR------QWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 146 aL~~dpkN~~AW~~r------~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
+...-|+|...-.|+ +.++.-+++-.++.....++.+..|.+..
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999 66666777777777777788777777743
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=81.63 E-value=8.7 Score=34.17 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
.+.+.+.++++|++-|.....|+..+..-.+-|.++.|...+.+++++||.+.-+-..|-.++.
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg 74 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLG 74 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhc
Confidence 5667788888888888888888888888888888888888888888888888776655544443
No 269
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.31 E-value=6.4 Score=34.78 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284 104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
..+|.+|+...|.+-..+++.+.+...-|+ .-.++-+|-+++-...-...|..+...++.+
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGD--DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445555555555555555555555555444 4444444444444333334444444444443
No 270
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.06 E-value=33 Score=36.60 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284 63 ERSSRSFQLTKEAICLNPG---NYTVWHFRRQIIETLH------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~---~~~aW~~R~~~L~~l~------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~ 133 (284)
..+++|+..|.++-.-.|. -++|-+.-|..+.... ..+.+||.-|+++ .--|.-+--+..+..+++.+|.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhh
Confidence 4458899999999988875 5677777777664421 2466777766653 4456777778889999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-----cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 134 GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-----WEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 134 ~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-----~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+++|+.|+..++++.|.....---|--++.++.. -..++.+.--++..-|.....=+-+.+
T Consensus 568 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (932)
T PRK13184 568 --YNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKF 633 (932)
T ss_pred --HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 9999999999999999998877777666666542 246778888888888888776665543
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.20 E-value=4.1 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=19.8
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
.+.++.+.++...|++++|+.++.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566777777777777777777777664
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.56 E-value=26 Score=33.32 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC----CChHH------HHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNY------TVWHFRRQIIETLHTDLQDELAFVGRIAKSNS----KNYQL------WHHRRWVAE 129 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p----kn~~a------W~hR~~ll~ 129 (284)
+++|+.++.++++-.++- ++..-.+.++-.+. ++++++-|..+++.+-- ++.++ .+|....++
T Consensus 139 q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 139 QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 789999999988766543 45566677776666 78999999888877542 33222 333444556
Q ss_pred HhCCCCHHHHHHHHHHHHHhCc----CChhHH--hHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 130 KLGTGAVNKELQFTKKMLSLDA----KNYHAW--SYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dp----kN~~AW--~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
.+|+ +-++.++|+.+.++-- +-.++- .-.+.+++..|+.+.+..-|+.+...
T Consensus 218 ~~G~--LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 218 LLGR--LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred Hhcc--cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 6677 8889999988876532 212222 22345666677666666666555443
No 273
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.47 E-value=8.2 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhCcC-----C-hhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 119 QLWHHRRWVAEKLGTG-----AVNKELQFTKKMLSLDAK-----N-YHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~-----~~~eel~~~~~aL~~dpk-----N-~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
..+.+-.|+++.+|++ .+..|++.+.++++.... + ...-+-.|-+-.++|++++|+.++.++|..--
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3445556666666551 245566666666654432 1 23445568888999999999999999987643
No 274
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.38 E-value=47 Score=34.97 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=30.4
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHH---------------------HhccCCChHHHHHHHHHHhcCCCC
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQML---------------------LGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~---------------------l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
..|..-|..+...|..+.||.+|..+ |....+|-.|-+|.+-...+.|..
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 44444555666666667777666543 444567777777776666655543
No 275
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=76.59 E-value=53 Score=29.90 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCc---hhhhhHHHH
Q 023284 138 KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG---GLIAMRDSE 214 (284)
Q Consensus 138 eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~---~~~~~~~~e 214 (284)
.-++.++..++..|+.|++|.-+|....+. ||..||.-..+.-... ......+.+
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~----------------------Aw~~RG~~~A~~V~~~~W~~~~~~~d~A 118 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHR----------------------AWDIRGSGYASTVTEAQWLGAHQACDQA 118 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHH----------------------HHHHHccchhcccCHHHHHHHHHHHHHH
Confidence 466778888888888888888776654432 5666653322211100 122346778
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 215 VNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 215 l~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
+..+.++|.++|....+..-+..+....++
T Consensus 119 ~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 119 VAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 899999999999987776655555444443
No 276
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.53 E-value=13 Score=27.70 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284 69 FQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK 116 (284)
Q Consensus 69 L~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk 116 (284)
+..++..+..||++..+.+.....+..-| +++++++-+-.++..++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g-~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAG-DYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcc
Confidence 34444555555555555555555555444 355555555555544443
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.32 E-value=15 Score=36.10 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=75.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284 72 TKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 72 ~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp 151 (284)
...+|.-.|.++..-.-+..+..++| +|+.++..+..+=..-..--.+-.-|..-+..+|+ +.+++..-.-+|.-.-
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~i~~~lg-~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r--~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSVIFSHLG-YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR--WREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHHhCCCCchhhHHHHHHHHHhh-hHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh--HHHHHHHHHHHhcccc
Confidence 34567777777777777777888888 57777666543322211111222223333445666 7788777777776655
Q ss_pred CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 152 KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 152 kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
.+...-.--+---..++.+++++.+-.+.+.++|.-.+.|.+
T Consensus 389 e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 389 EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 555544333333456677888999999999999888888764
No 278
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.55 E-value=19 Score=35.46 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
++..+-.-+..+|...|..+..-.-|..+..++|. ++.++..+.-+=.+=..--.+-.-+.--+.++++|++|+....
T Consensus 304 d~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 304 DIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred CHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--HHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45566666778888999999888889999999998 8888877655444444444454445555677889999998888
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
-++.-...+.....--..--..+ .++++++-+-.+.+.++|.-.+-|-.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l-------~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADAL-------QLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHhccccCChhheeeecccHHHH-------hHHHHHHHHHHHHhccCChhccccee
Confidence 88877766655432111111111 23577788888888999988887743
No 279
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.33 E-value=34 Score=27.95 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHH-hCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 136 VNKELQFTKKMLS-LDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 136 ~~eel~~~~~aL~-~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
..+-+.+++..++ -+| +.-.+-+|.+.-..+++.|+.++.+++..|+..|+|..|-.-+..+-.++
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~i 118 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKI 118 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 5667788888886 444 34467788888889999999999999999999999999988887775554
No 280
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.38 E-value=21 Score=35.98 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTV-WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQ 141 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~a-W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~ 141 (284)
+.+..|++|+..++...|.-..+ ......++.+-+ ...++-.++.++|.++..-+...+-.|.....+.+ ...+++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~-~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~--i~~a~~ 697 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYG-LHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN--ISGALE 697 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhh-hhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh--hHHHHH
Confidence 34456666666666666654322 234445555555 34566666666666665444444444555555555 666777
Q ss_pred HHHHHHHhCcCChhHHhH
Q 023284 142 FTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~ 159 (284)
.+..|++++|+|..+=.-
T Consensus 698 ~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHhcCCCChhhHHH
Confidence 777777777776655433
No 281
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.64 E-value=26 Score=34.59 Aligned_cols=117 Identities=9% Similarity=-0.039 Sum_probs=77.6
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH-HHhCCC--------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023284 77 CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI-AKSNSK--------NYQLWHHRRWVAEKLGTGAVNKELQFTKKML 147 (284)
Q Consensus 77 ~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~-l~~~pk--------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL 147 (284)
.+..+...+..-+...-...| ++.++.+.+... +...|. .--.|++.|.|..++|. +.-...+|.++|
T Consensus 234 n~a~~s~~~l~LKsq~eY~~g-n~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~--y~~~~~~F~kAL 310 (696)
T KOG2471|consen 234 NIAQDSSMALLLKSQLEYAHG-NHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC--YQASSVLFLKAL 310 (696)
T ss_pred hhcCCCcHHHHHHHHHHHHhc-chHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh--HHHHHHHHHHHH
Confidence 333445555555555544455 577777665433 333333 23457888888887777 666666666666
Q ss_pred H------------------hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 148 S------------------LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 148 ~------------------~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+ .-.|.+..-++-|..+-+.|+.-.|.+|+.++.....+|...|.-..-
T Consensus 311 ~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 311 RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4 123456667777888888888899999999999999999999976643
No 282
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.86 E-value=77 Score=33.90 Aligned_cols=129 Identities=19% Similarity=0.130 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHH-Hh---CC-CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 99 DLQDELAFVGRIAKSNSK---NYQLWHHRRWVAE-KL---GT-GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pk---n~~aW~hR~~ll~-~l---~~-~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
.|+.|+.+|+++-...|. -|.|-..-|..+- +. |. +.+.+||.-+++.- --|.-.--+..++.|++.++.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhH
Confidence 488999999999988864 4566655565543 22 22 23566666665432 2344455677788999999999
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
+||+.|+.-++++.|+..-.=.-|-.++.++... ...--..++.+..-++...|..-.
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES--LYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999887666665555544210 000012344555555666665443
No 283
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=66.55 E-value=88 Score=27.22 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK-SNSKNYQLWHHRRWVAEKLGTGAVNKELQFT 143 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~ 143 (284)
.++++.-..+.+..-|.... -...+..+..+| ++.++...|.+++. +...+.+....+......+++ +..+...+
T Consensus 72 P~R~~Rea~~~~~~ApTvqn-r~rLa~al~elG-r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--~A~a~~tL 147 (251)
T COG4700 72 PERHLREATEELAIAPTVQN-RYRLANALAELG-RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--FAAAQQTL 147 (251)
T ss_pred hhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhh-hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--HHHHHHHH
Confidence 35677766777777665431 223466788889 48888888888774 888899999999999999988 99999999
Q ss_pred HHHHHhCcCChhH--HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHH
Q 023284 144 KKMLSLDAKNYHA--WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEA 221 (284)
Q Consensus 144 ~~aL~~dpkN~~A--W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~ 221 (284)
+++.+-+|.--.. -.--+-++...|++++|-..++.+|.-.|+-..- .+.+..|.+.|+.++.+. ...+.++.+
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar-~~Y~e~La~qgr~~ea~a---q~~~v~d~~ 223 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR-IYYAEMLAKQGRLREANA---QYVAVVDTA 223 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH-HHHHHHHHHhcchhHHHH---HHHHHHHHH
Confidence 9999988854433 3334567888999999999999999999986544 444555666776654432 234566667
Q ss_pred HhcCCC
Q 023284 222 ILGNPE 227 (284)
Q Consensus 222 i~~~P~ 227 (284)
.+..|+
T Consensus 224 ~r~~~H 229 (251)
T COG4700 224 KRSRPH 229 (251)
T ss_pred Hhcchh
Confidence 666665
No 284
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.08 E-value=17 Score=32.48 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
.+-+.+++.+++.+-|+...-|+..+..-..-| ....+.+.+++.|+++|.+-..=.+|-.++
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~ekag-~~daAa~a~~~~L~ldp~D~~gaa~kLa~l 73 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAG-EFDAAAAAYEEVLELDPEDHGGAALKLAVL 73 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-cHHHHHHHHHHHHcCCcccccchhhhHHhh
Confidence 356677777777777777777777777666666 466777777777777777766555554443
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=64.60 E-value=19 Score=21.41 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
+.++.+.++...|+ +++++.++.+++++
T Consensus 4 ~~~~la~~~~~~g~--~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGR--YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh--cchhhHHHHHHHHH
Confidence 44556666666666 77777776666654
No 286
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.34 E-value=70 Score=29.13 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHh-----CC---------------CCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284 103 ELAFVGRIAKSNSKNYQLWHHRRWVAEKL-----GT---------------GAVNKELQFTKKMLSLDAKNYHAWSYRQW 162 (284)
Q Consensus 103 eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-----~~---------------~~~~eel~~~~~aL~~dpkN~~AW~~r~~ 162 (284)
-+..++.=+...|++|++|.-+|....+. |. ...+.+...+-++++++|+-..|......
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44445555566677766655444433322 10 13678889999999999999999999888
Q ss_pred HHHHccC
Q 023284 163 VLQALGG 169 (284)
Q Consensus 163 vl~~l~~ 169 (284)
+-..||.
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 8888885
No 287
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.02 E-value=1.3e+02 Score=28.37 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-------------------------hCHHHHHHHHHHHHHh-CCCCh
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-------------------------TDLQDELAFVGRIAKS-NSKNY 118 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-------------------------~~~~~eL~~~~~~l~~-~pkn~ 118 (284)
.+|||.+...++.+-|...++.-.-...+.+-. ..+.+.+..+++++.. .|.-|
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 368999999999999999988866655554321 0256677777777653 34444
Q ss_pred HHHHHHH------------------HHHH---HhCC---------------CCHHHHHHHHHHHHHh--CcCChhHHhHH
Q 023284 119 QLWHHRR------------------WVAE---KLGT---------------GAVNKELQFTKKMLSL--DAKNYHAWSYR 160 (284)
Q Consensus 119 ~aW~hR~------------------~ll~---~l~~---------------~~~~eel~~~~~aL~~--dpkN~~AW~~r 160 (284)
+.-.--. .++. .+.. ......|..++.+... =...++.|.-|
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~R 371 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAAR 371 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHH
Confidence 4321111 1111 1110 0134456666655554 23344667778
Q ss_pred HHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284 161 QWVLQALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 161 ~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
+-++.++|+-++|-+.|+++|.+-++-...
T Consensus 372 adlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 372 ADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 888888888888888888888887766543
No 288
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=63.74 E-value=40 Score=32.67 Aligned_cols=105 Identities=11% Similarity=0.027 Sum_probs=66.5
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHHhhhCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYTVW----HFRRQIIETLHTDLQDELAFVGRIAK------SNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~aW----~~R~~~L~~l~~~~~~eL~~~~~~l~------~~pkn~~aW~hR~~ll~~ 130 (284)
+.+.....+.++..+|+.-.++.... ...|.....|+ +|+++|++-..-|. -.-.-..+=.+.|.+++.
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~-DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv 107 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK-DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV 107 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh-hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh
Confidence 34445678999999999988886433 34455555555 68888876432221 111112222345667777
Q ss_pred hCCCCHHHHHHHHHHHHHhC------cCChhHHhHHHHHHHHcc
Q 023284 131 LGTGAVNKELQFTKKMLSLD------AKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~d------pkN~~AW~~r~~vl~~l~ 168 (284)
+|. +++++.||.+-|.+- ..-..|.++.+.|+..-|
T Consensus 108 ~G~--fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 108 KGA--FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hcc--cchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 777 999999998887642 233467888888876554
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.12 E-value=1.4e+02 Score=28.21 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=85.6
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-------
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS------- 113 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------- 113 (284)
++..++.|..+-..|-.++... ..++|- .+|..+|-|..+...-..+....| +.+.+-++++++|-.
T Consensus 3 ~f~hs~~Y~~~q~~F~~~v~~~--Dp~~l~---~ll~~~PyHidtLlqls~v~~~~g-d~~~A~~lleRALf~~e~~~~~ 76 (360)
T PF04910_consen 3 KFEHSKAYQEAQEQFYAAVQSH--DPNALI---NLLQKNPYHIDTLLQLSEVYRQQG-DHAQANDLLERALFAFERAFHP 76 (360)
T ss_pred EEeCCHHHHHHHHHHHHHHHcc--CHHHHH---HHHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999888887777655 334443 357899999999999999999988 566666666666431
Q ss_pred -------C------------CCChHHHH---HHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-ChhHHhH-HHHHHHHccC
Q 023284 114 -------N------------SKNYQLWH---HRRWVAEKLGTGAVNKELQFTKKMLSLDAK-NYHAWSY-RQWVLQALGG 169 (284)
Q Consensus 114 -------~------------pkn~~aW~---hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-N~~AW~~-r~~vl~~l~~ 169 (284)
+ +.|-+.|. .-...+.+-|- +.-|+++++-++.+||. +..+=-. .-...-+-+.
T Consensus 77 ~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~--~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 77 SFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC--WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred HhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 1 11222221 11122223344 99999999999999998 6544333 2222233355
Q ss_pred cHHHHHHHHHHHhc
Q 023284 170 WEDELDYCQMLLGE 183 (284)
Q Consensus 170 ~~eeL~~~~~~l~~ 183 (284)
++--+++++.....
T Consensus 155 y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 155 YQWLIDFSESPLAK 168 (360)
T ss_pred HHHHHHHHHhHhhh
Confidence 55556666655553
No 290
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.00 E-value=41 Score=24.64 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHH---HHccCcHHHHHHHHHHHhc
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVL---QALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl---~~l~~~~eeL~~~~~~l~~ 183 (284)
.+++|....++|++.++....|.-.|++. ..+|++.+.|++..+-+++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888777776666666554 4567777777776665554
No 291
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=61.91 E-value=1.1e+02 Score=26.67 Aligned_cols=133 Identities=11% Similarity=-0.062 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS-LDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~-~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
-+.++.-..+.+.+-|.+.+- ...+..+..+|+ +.++...|.+++. +...+......+......++++.++....+
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr-~rLa~al~elGr--~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 72 PERHLREATEELAIAPTVQNR-YRLANALAELGR--YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHH-HHHHHHHHHhhh--hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344554455556666654322 223667788999 9999999999986 778888888888889999999999999999
Q ss_pred HHHhccCCChHHHHHH--HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 179 MLLGEDIFNNSAWNQR--YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r--~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
+..+.+|..-+.--+. +-.+...|++ ..+-..++.+|.-+|+-+..-+|--++...+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~-------a~Aesafe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKY-------ADAESAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCc-------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999999766554333 4456667775 2344556788889999888776655555443
No 292
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=61.89 E-value=46 Score=29.20 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284 68 SFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 68 aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~ 130 (284)
|..+|.+|+.+.|.+-..+|..+.+-...+. .-.++=+|-+++....-...|..+-..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~-~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD-DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT--HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6788999999999999999999998888774 4455555555554333335566555555554
No 293
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.79 E-value=12 Score=36.75 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAK------------------SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~------------------~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
.+|++.|.|...++. +.-...+|.++|+ ...|.+.+-++-|..+-++|+ ...+.+|+-+
T Consensus 284 if~NNlGcIh~~~~~-y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr--Pl~AfqCf~~ 360 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGC-YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR--PLLAFQCFQK 360 (696)
T ss_pred eeecCcceEeeehhh-HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC--cHHHHHHHHH
Confidence 467888888777774 6666666666664 235788899999999999999 9999999999
Q ss_pred HHHhCcCChhHHhHHHHHH
Q 023284 146 MLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 146 aL~~dpkN~~AW~~r~~vl 164 (284)
+.....+|...|...+-+.
T Consensus 361 av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHhcCcHHHHHHHHHH
Confidence 9999999999999876543
No 294
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.86 E-value=11 Score=30.63 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 023284 23 EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYS------DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL 96 (284)
Q Consensus 23 ~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~------~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l 96 (284)
.|.|=.|.... |..+-+....+.++++...+++.. .+...-|+++++.++..+|+|..+-..+..++..+
T Consensus 42 GWfDgnP~~L~----pl~p~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 42 GWFDGNPANLN----PLPPEEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp -S--S-GGGTS-------HHHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CccCCCccccC----CCChHHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 35555554442 444455556666666554444432 33447799999999999999999999999988888
Q ss_pred h
Q 023284 97 H 97 (284)
Q Consensus 97 ~ 97 (284)
+
T Consensus 118 g 118 (141)
T PF14863_consen 118 G 118 (141)
T ss_dssp H
T ss_pred H
Confidence 7
No 295
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.88 E-value=1.4e+02 Score=27.43 Aligned_cols=125 Identities=10% Similarity=-0.007 Sum_probs=82.4
Q ss_pred HHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhCcCChhHHhHHHHHHHHccCcH
Q 023284 93 IETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM-LSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 93 L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a-L~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
+...+ ++.++...+..++...|++..+=..-..++-..|+ .+.+...++.. .+..-+-+++-.-+.-++.+....
T Consensus 144 ~~~~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~--~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~- 219 (304)
T COG3118 144 LIEAE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD--VEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT- 219 (304)
T ss_pred hhhcc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC--hHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC-
Confidence 33445 58899999999999999998888888888888888 77776665442 222223333322223344443322
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
.+..-..+.+..||+|..+-.-.+..+...++. +++++..-..++.+-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~-------e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRN-------EAALEHLLALLRRDRGF 269 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhcccc
Confidence 245667888899999999888877777666764 55666666666555443
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=58.58 E-value=1.6e+02 Score=28.27 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc----CChhHH------hHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNY------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA----KNYHAW------SYRQW 162 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp----kN~~AW------~~r~~ 162 (284)
.+++.|+.|++++..-..+- ++....|-++..+.+ +++++-|..++.++-. ++.++= +|..-
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D--~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD--YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh--hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 37899999999988654443 456667777788877 9999999888887632 333433 33344
Q ss_pred HHHHccCcHHHHHHHHHHHhccCC
Q 023284 163 VLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 163 vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
.++.+|..-+|.++++++.++-..
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH
Confidence 556778899999999998887643
No 297
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.92 E-value=25 Score=21.46 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=12.9
Q ss_pred HhHHHHHHHHccCcHHHHHHHH--HHHhccCC
Q 023284 157 WSYRQWVLQALGGWEDELDYCQ--MLLGEDIF 186 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~--~~l~~dp~ 186 (284)
|.-.+..+...|++++|++.+. -+..+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3333444444555555555522 44444443
No 298
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=56.54 E-value=1.1e+02 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRI---------------------AKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~---------------------l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
+.+.|.+-|..|...| +++.+|.+|..+ |....++-.|=+|.+..+..-|+ ..+++
T Consensus 911 d~~L~~WWgqYlES~G-emdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--v~~Av 987 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVG-EMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--VVKAV 987 (1416)
T ss_pred chHHHHHHHHHHhccc-chHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--HHHHH
Confidence 3466666677777777 467777776654 33445555566666666665555 55666
Q ss_pred HHHHHH
Q 023284 141 QFTKKM 146 (284)
Q Consensus 141 ~~~~~a 146 (284)
.||.+|
T Consensus 988 ~FfTrA 993 (1416)
T KOG3617|consen 988 KFFTRA 993 (1416)
T ss_pred HHHHHH
Confidence 555443
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.88 E-value=54 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=25.9
Q ss_pred hhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 154 YHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
..|..+.+.+...+|.+++|+..++++|.+--
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35677778888889999999999999888653
No 300
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.29 E-value=34 Score=18.83 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHF 88 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~ 88 (284)
+++-.++++++...|.+..+|..
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHH
Confidence 44555666666666666666644
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.14 E-value=2e+02 Score=27.06 Aligned_cols=150 Identities=11% Similarity=0.023 Sum_probs=91.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHH--h-----CC------------CcHHHHHHH---HHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSS-------RSFQLTKEAIC--L-----NP------------GNYTVWHFR---RQI 92 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~-------~aL~~~~~~L~--l-----nP------------~~~~aW~~R---~~~ 92 (284)
|.-+|=+.++......+....+... +||-.++.++. . ++ +|-..|.-. ...
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4677888888888877777666554 45555443332 2 22 233333322 233
Q ss_pred HHHhhhCHHHHHHHHHHHHHhCCC-ChHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC-h---hHHh-HHHHHHH
Q 023284 93 IETLHTDLQDELAFVGRIAKSNSK-NYQL-WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN-Y---HAWS-YRQWVLQ 165 (284)
Q Consensus 93 L~~l~~~~~~eL~~~~~~l~~~pk-n~~a-W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN-~---~AW~-~r~~vl~ 165 (284)
|..-| -+..|++++.-++.+||. ++.. -.+--...-+-++ ++--+++++.......++ . ..+. -+..++.
T Consensus 113 L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~--y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 113 LGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ--YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC--HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 33345 389999999999999998 5543 3333333334455 777778888777654433 1 1122 2345556
Q ss_pred HccCc---------------HHHHHHHHHHHhccCCChHHHHHH
Q 023284 166 ALGGW---------------EDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 166 ~l~~~---------------~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
.+++- ++|-+...+||...|.=......+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~ 233 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDK 233 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66666 788889999999998766655544
No 302
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.71 E-value=51 Score=20.07 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--HHHHHHhCcCC
Q 023284 121 WHHRRWVAEKLGTGAVNKELQF--TKKMLSLDAKN 153 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~--~~~aL~~dpkN 153 (284)
|..-+..+...|+ +++|+.+ +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~k--y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGK--YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHHHHhcccC
Confidence 3344445555555 6666666 33555555543
No 303
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.76 E-value=1.3e+02 Score=24.56 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHH-hCCCcH-HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 023284 66 SRSFQLTKEAIC-LNPGNY-TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG 132 (284)
Q Consensus 66 ~~aL~~~~~~L~-lnP~~~-~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~ 132 (284)
.+.+.+++.+++ -.|..- .--+|...--.+++ .|+.++.+++.+|...|.|.||-.-+..+-.++.
T Consensus 52 ~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 52 QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQALELKETIEDKIT 119 (149)
T ss_pred HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 467888888876 444321 22222222223344 4778888888888888888888777777666554
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=51.54 E-value=1.9e+02 Score=26.35 Aligned_cols=55 Identities=4% Similarity=-0.019 Sum_probs=37.0
Q ss_pred HHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 92 IIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 92 ~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.+...+ .++...+.++.++..+|.+-.+|..-...+...|+ ...++..|+++-+.
T Consensus 162 ~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~l~~~ 216 (280)
T COG3629 162 ALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQLKKT 216 (280)
T ss_pred HHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHHHHHH
Confidence 333344 36677777777777777777777777777777776 66777777666655
No 305
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.24 E-value=83 Score=31.93 Aligned_cols=105 Identities=8% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNY--TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~--~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
+..-+|+.|+..++.+-|.+. ++....+.+|.+.|... +|--.+..++..-|-...-.+--+.++-.++. +...+
T Consensus 227 G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sa-dA~iILhAA~~dA~~~t~n~y~l~~i~aml~~--~N~S~ 303 (886)
T KOG4507|consen 227 GEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSA-DAAVILHAALDDADFFTSNYYTLGNIYAMLGE--YNHSV 303 (886)
T ss_pred CChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccccc-chhheeehhccCCccccccceeHHHHHHHHhh--hhhhh
Confidence 333456666666666666544 34444455555555322 22111222222222222223334555555555 66777
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
.+|+.+.+.+|..-.+.-.|..++....+.
T Consensus 304 ~~ydha~k~~p~f~q~~~q~~~~ISC~~~L 333 (886)
T KOG4507|consen 304 LCYDHALQARPGFEQAIKQRKHAISCQQKL 333 (886)
T ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHH
Confidence 788888888887777777777666554433
No 306
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=50.69 E-value=2.8e+02 Score=27.97 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=27.3
Q ss_pred cceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHH
Q 023284 39 VVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWH 87 (284)
Q Consensus 39 ~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~ 87 (284)
--.|+-||.+.++|+..-.-.+.. -.+++-+.++..+...|....+|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~ 57 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWK 57 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHH
Confidence 344566666666666554444433 335566666666666666666664
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.90 E-value=2.4e+02 Score=25.36 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHH------Hhh-------hCHHHHHHHHHHHHHhCCCChH-HHHHHHH---
Q 023284 64 RSSRSFQLTKEAICLNPGNYTVWHFRRQIIE------TLH-------TDLQDELAFVGRIAKSNSKNYQ-LWHHRRW--- 126 (284)
Q Consensus 64 ~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~------~l~-------~~~~~eL~~~~~~l~~~pkn~~-aW~hR~~--- 126 (284)
.+++|.++++++|.+..+ ||+.-. .++ .++++++.+|+.+..-....-. +-.++..
T Consensus 88 ~~~eAv~cL~~aieIyt~-------~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTD-------MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred ChHHHHHHHHHHHHHHHh-------hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 568899999988886543 333322 122 2456666677666553322211 1112221
Q ss_pred --HHHHhCCCCHHHHHHHHHHHHHhCcCC-hhHHhHHHHHHHHc------cCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 127 --VAEKLGTGAVNKELQFTKKMLSLDAKN-YHAWSYRQWVLQAL------GGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 127 --ll~~l~~~~~~eel~~~~~aL~~dpkN-~~AW~~r~~vl~~l------~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
.-..+++ +.+++..|+++..-.-.| ..-|+-++.++... .+.-.+-..+++..+++|...+.--.+
T Consensus 161 A~yaa~leq--Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 161 AQYAAQLEQ--YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 1124455 888888888887765444 45677777766532 122334455677778888877654443
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.07 E-value=1.9e+02 Score=25.03 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=54.4
Q ss_pred CCC-HHHHHHHHHHHH----hCCCc---HHHHHHHHHHHHHhhh------CHHHHHHHHHHHHHhCCC--C----hHHHH
Q 023284 63 ERS-SRSFQLTKEAIC----LNPGN---YTVWHFRRQIIETLHT------DLQDELAFVGRIAKSNSK--N----YQLWH 122 (284)
Q Consensus 63 ~~s-~~aL~~~~~~L~----lnP~~---~~aW~~R~~~L~~l~~------~~~~eL~~~~~~l~~~pk--n----~~aW~ 122 (284)
+++ ++|++.+-.||. ...++ +..+..-.|+...++. -++.|++.|.+++..... . ..+-+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 444 578887766654 23333 2333344444444441 255677777777764422 2 34555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dp 151 (284)
--|.+-.++|+ +++|+..+.+++..--
T Consensus 170 LigeL~rrlg~--~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGN--YDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHHcCCC
Confidence 67888899999 9999999999997543
No 309
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.75 E-value=1.7e+02 Score=21.14 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT 98 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~ 98 (284)
.+|++++.+++...|++.+.-.+|+.+..-+.+
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 466777777788999999988888888776653
No 310
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.32 E-value=1.6e+02 Score=27.48 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh-hhHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI-AMRDSE 214 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~-~~~~~e 214 (284)
+-+++.+.+.++..+|.|++.=.-..-++..+|....|++.+..+=-.+..+-|.-++-.--+..++...... ..++..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~ 278 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENA 278 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHH
Confidence 6778889999999999999988888888888999888888876544444555554443333333343332222 334444
Q ss_pred HHHHHHHHh
Q 023284 215 VNFTIEAIL 223 (284)
Q Consensus 215 l~~~~~~i~ 223 (284)
+.++.....
T Consensus 279 ~~fy~~~~~ 287 (365)
T PF09797_consen 279 LKFYDNSEK 287 (365)
T ss_pred HHHHHHHHH
Confidence 555544443
No 311
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=30.94 E-value=1.3e+02 Score=21.69 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=23.7
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l 238 (284)
-|++.++...|+++++...+++...|++...=.|..-+
T Consensus 19 ~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 19 EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 34443333446777888888888888887655454433
No 312
>PF13041 PPR_2: PPR repeat family
Probab=29.83 E-value=1.2e+02 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=25.1
Q ss_pred ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC
Q 023284 153 NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 153 N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
|...|+-....+.+.|++++|++.++++.+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 445677777777778888888888888887653
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=29.54 E-value=5.7e+02 Score=25.33 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=79.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHH--------HHHHHHH------hCCCChHHHHH
Q 023284 58 VYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELA--------FVGRIAK------SNSKNYQLWHH 123 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~--------~~~~~l~------~~pkn~~aW~h 123 (284)
+...|+..++|+++...+++..|-++..=+.--..++. .|..+|. -++..+. +.-++.+.-+.
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq---~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQ---AYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 44456667899999999999999998655433222221 1222222 1111111 22333333222
Q ss_pred H--HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 124 R--RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 124 R--~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
. ..-|..-|. +.+..-...-+.+++| .+.+.--.|.++....+|++|.+++... |-|..+|..+
T Consensus 466 LaDAEyLysqge--y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~dsk 531 (549)
T PF07079_consen 466 LADAEYLYSQGE--YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHhccc--HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhHHHH
Confidence 2 223334466 8888888888889999 7888888899999999999999887543 5577777654
No 314
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.36 E-value=85 Score=21.62 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhCc
Q 023284 137 NKELQFTKKMLSLDA 151 (284)
Q Consensus 137 ~eel~~~~~aL~~dp 151 (284)
+.++.++.++++.|-
T Consensus 3 ~~A~~~~~~Av~~D~ 17 (69)
T PF04212_consen 3 DKAIELIKKAVEADE 17 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=29.09 E-value=3e+02 Score=25.10 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLG 182 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~ 182 (284)
++.....+++.+.+||.+-.+|....-++...|+...++..|.++=.
T Consensus 169 ~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 169 ADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 55566666677777777777777776666777766666666655433
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.90 E-value=4e+02 Score=24.25 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH------HHHHHHHccCcHHHHHHHHHHHhccCCChH------HHH
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY------RQWVLQALGGWEDELDYCQMLLGEDIFNNS------AWN 192 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~------r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s------AW~ 192 (284)
...++.-.. ++++-.++.++.+-.-.|-+-|+- -+.+++.+..|.|+..++++++.+...+-| |.-
T Consensus 38 AvafRnAk~--feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 38 AVAFRNAKK--FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHhhcc--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccH
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESP 231 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesa 231 (284)
--+-++.+-.- +.+|+.|++++.+--++.+.
T Consensus 116 KAak~lenv~P--------d~AlqlYqralavve~~dr~ 146 (308)
T KOG1585|consen 116 KAAKALENVKP--------DDALQLYQRALAVVEEDDRD 146 (308)
T ss_pred HHHHHhhcCCH--------HHHHHHHHHHHHHHhccchH
No 317
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=28.38 E-value=82 Score=17.08 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=16.0
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
|+..-..+.+.|.++++.+.++++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444555666667777776666554
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.68 E-value=7.4e+02 Score=25.72 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHhCCCCh-HHH---HHH--HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHH
Q 023284 99 DLQDELAFVGRIAKSNSKNY-QLW---HHR--RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED 172 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~-~aW---~hR--~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~e 172 (284)
+|..++++|..-+..-|.+- .-= ..| ..++-++.+ +++|++.+..|=+.||+++-.=.+..-++-.=+.-++
T Consensus 369 ~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--LD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 369 KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--LDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 58899999998888666432 211 222 233344545 9999999999999999999776665555555566677
Q ss_pred HHHHHHHHHhc
Q 023284 173 ELDYCQMLLGE 183 (284)
Q Consensus 173 eL~~~~~~l~~ 183 (284)
||.+.......
T Consensus 447 AL~~~~~~~s~ 457 (872)
T KOG4814|consen 447 ALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhh
Confidence 87776655544
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.88 E-value=3.5e+02 Score=21.75 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHh----------CcCChhHHhHHHH--HHHHccCcHHHHHHHH-------HHHhccCCChHHH----H
Q 023284 136 VNKELQFTKKMLSL----------DAKNYHAWSYRQW--VLQALGGWEDELDYCQ-------MLLGEDIFNNSAW----N 192 (284)
Q Consensus 136 ~~eel~~~~~aL~~----------dpkN~~AW~~r~~--vl~~l~~~~eeL~~~~-------~~l~~dp~n~sAW----~ 192 (284)
++++-..|.++.+. |..-+.|..|-+. ++..||+|++.|...+ +-=+++-..-..| .
T Consensus 25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVf 104 (144)
T PF12968_consen 25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVF 104 (144)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 55555555555542 2233445555432 4566777765544444 3334555555555 3
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHH
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEA 221 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~ 221 (284)
.|+..|..+|+. ++++..+.++
T Consensus 105 sra~Al~~~Gr~-------~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRK-------EEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-H-------HHHHHHHHHH
T ss_pred HHHHHHHhcCCh-------HHHHHHHHHH
Confidence 566677777764 4455555443
No 320
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=24.61 E-value=7.5e+02 Score=25.08 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 73 KEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 73 ~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
++.|+.||.+..+|+..-+-.+.. .++++-+.+++.....|-...+|--
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~s~r~W~~ 58 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPSSPRAWKL 58 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCcHHHHH
Confidence 678999999999998765544443 4788889999999999999999943
No 321
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=24.56 E-value=1e+02 Score=22.06 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhCcC
Q 023284 136 VNKELQFTKKMLSLDAK 152 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpk 152 (284)
+.+++.++.++++.|..
T Consensus 3 l~~A~~l~~~Ave~d~~ 19 (75)
T cd02677 3 LEQAAELIRLALEKEEE 19 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666555543
No 322
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=24.47 E-value=2.1e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~ 133 (284)
+++-++++++.++..+|.|..+-.-+.-++..+|.
T Consensus 85 d~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 85 DYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp -HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 57778888888888888888887777777777763
No 323
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=24.12 E-value=7.2e+02 Score=24.72 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 211 RDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 211 ~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
+-++.+++..-+-.+|..++.|+-....++.
T Consensus 134 i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 134 IYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 3456777777777889999999765555443
No 324
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.06 E-value=4.3e+02 Score=24.93 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=50.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPG---NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~---~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
-.++..|-..++.+..++.+|+.-|+ ++..|..+.+++...| .+++.+.+|+.|+.....=.+=
T Consensus 110 l~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~-~~e~vi~iyEeAi~agAqPieE 176 (353)
T PF15297_consen 110 LNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG-PIEDVIAIYEEAILAGAQPIEE 176 (353)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHcCCChHHH
Confidence 34455666678999999999998884 6788999999988888 5789999999998877664433
No 325
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=23.40 E-value=3.4e+02 Score=21.95 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=30.3
Q ss_pred hhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 023284 46 PEFSETM-SYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET 95 (284)
Q Consensus 46 p~~~~a~-~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~ 95 (284)
.+|.++. .+.-.-+.+.+. +.|-.+|+.++..+|+|-.++.-+-..|..
T Consensus 73 DeY~EaLRDfq~~~iaKle~-e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEP-ENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-H-HHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3444433 233334555665 788999999999999999988666555554
No 326
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.09 E-value=1.6e+02 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhCc
Q 023284 136 VNKELQFTKKMLSLDA 151 (284)
Q Consensus 136 ~~eel~~~~~aL~~dp 151 (284)
+..|.++++++|..|-
T Consensus 5 ~~~A~~~I~kaL~~dE 20 (79)
T cd02679 5 YKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4556666666665554
No 327
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=7.9e+02 Score=24.66 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH--HhHHHHHHHHccCcHHHHHHH
Q 023284 100 LQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA--WSYRQWVLQALGGWEDELDYC 177 (284)
Q Consensus 100 ~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A--W~~r~~vl~~l~~~~eeL~~~ 177 (284)
.+.+.+.+.......|++.---.+++-++...|+ .+.++..+...++.+=|-.+. .+-++|+.-...+|..|-.++
T Consensus 249 ~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~--~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 249 GEECEKALKKYRKRYPKGALWLLMEARILSIKGN--SEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSF 326 (546)
T ss_pred HHHHHHHhHHHHHhCCCCccHHHHHHHHHHHccc--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4566666677778999999988999999999988 888999888888744444433 345677777777888888888
Q ss_pred HHHHhccCCChHHHHHHH
Q 023284 178 QMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 178 ~~~l~~dp~n~sAW~~r~ 195 (284)
+....+.--....+.|+.
T Consensus 327 ~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 327 DLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHhhhhhhHHHHHHHH
Confidence 887766554444444544
No 328
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=22.41 E-value=8e+02 Score=24.67 Aligned_cols=172 Identities=10% Similarity=0.034 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhCCCcH-----HHHHHHHHHHHH-----------hhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNY-----TVWHFRRQIIET-----------LHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~-----~aW~~R~~~L~~-----------l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~ 130 (284)
++.......-...|++. .+|.+--..|+. +|.++++||.-+++.. .+....-.-.-|+-++..
T Consensus 276 e~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c-~~~~~~lpi~~~~~lle~ 354 (547)
T PF14929_consen 276 EYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFC-ISSTCALPIRLRAHLLEY 354 (547)
T ss_pred HHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhc-cCCCccchHHHHHHHHHH
Confidence 34444433335556665 677666666642 3446888877665532 233444445667888888
Q ss_pred hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc--HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284 131 LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW--EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI 208 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~--~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~ 208 (284)
.+++.-..-..+++.+++++|..-..--.-... ... .+ +.=++.+.--+...|+..--+-+-.-.+....+++...
T Consensus 355 ~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~-~~~-~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~ 432 (547)
T PF14929_consen 355 FDQNNSSVLSSCLEDCLKKDPTMSYSLERLILL-HQK-DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKE 432 (547)
T ss_pred hCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhh-hhh-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccH
Confidence 886446677789999999999976654443322 222 22 12233333444555666554443333333345543211
Q ss_pred hhHHHHHHHHHHHHh--cCCCCccHHHHHHHHHcc
Q 023284 209 AMRDSEVNFTIEAIL--GNPENESPWRYLRGLYKD 241 (284)
Q Consensus 209 ~~~~~el~~~~~~i~--~~P~nesaW~y~~~ll~~ 241 (284)
.-.+..+..+-..+. -+-.|..+|.++...+.+
T Consensus 433 e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~ 467 (547)
T PF14929_consen 433 EDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPK 467 (547)
T ss_pred HHHHHHHhcchhcccccccccccHHHHHHHHHhhH
Confidence 112223222222222 233455688887766664
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.29 E-value=4.7e+02 Score=24.37 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT 133 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~ 133 (284)
.+.+|+.++.++++.||=+-+.|-.-..+|..+|+
T Consensus 294 ~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 294 KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 36667777777777777777777666666666665
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.07 E-value=2.2e+02 Score=26.41 Aligned_cols=40 Identities=10% Similarity=-0.044 Sum_probs=31.6
Q ss_pred HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
...-|.+.+|++...+++..||=+.+.|.-...+|..+|.
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 3455778888888888888888888888877777777764
No 331
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.70 E-value=4.3e+02 Score=21.26 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=18.1
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHh
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLG 182 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~ 182 (284)
+.|+..+..+|+.++|+..+..+.+
T Consensus 104 fsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 104 FSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Confidence 5677778888888888887776654
No 332
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=2.9e+02 Score=23.76 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=40.8
Q ss_pred ecChhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 023284 43 AYKPEFSETM-SYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH 97 (284)
Q Consensus 43 ~~~p~~~~a~-~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~ 97 (284)
.|||+..... +|-.+-.....++-+|--+.-++-+.||..+..-..++.+|+.|.
T Consensus 19 ryNPE~latLe~yVq~qak~ntYdleanL~vLkLYQfnP~~~nt~itaqILlKaL~ 74 (217)
T KOG3252|consen 19 RYNPENLATLENYVQAQAKENTYDLEANLAVLKLYQFNPEFFNTTITAQILLKALT 74 (217)
T ss_pred cCChhHHHHHHHHHHHHHhccccchhHHHHHHHHHhcCHHHhhhHHHHHHHHHHHh
Confidence 4889886544 555555556677777777777788899999988888888888765
No 333
>PF12854 PPR_1: PPR repeat
Probab=21.53 E-value=1.5e+02 Score=17.38 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=15.5
Q ss_pred hhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284 154 YHAWSYRQWVLQALGGWEDELDYCQM 179 (284)
Q Consensus 154 ~~AW~~r~~vl~~l~~~~eeL~~~~~ 179 (284)
...|+-....+-+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555556666677777766655
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.29 E-value=3.4e+02 Score=23.55 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHhCCCC--hHHH-HHH-HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH-----HHHHHHHccC
Q 023284 99 DLQDELAFVGRIAKSNSKN--YQLW-HHR-RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY-----RQWVLQALGG 169 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn--~~aW-~hR-~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~-----r~~vl~~l~~ 169 (284)
++.+++.-+..++. .|++ ..+- .-| ..++...|. ++++|..+ +...-++|.. ||.++-..|+
T Consensus 104 ~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k--~D~AL~~L------~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 104 NLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKK--ADAALKTL------DTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred cHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhh--HHHHHHHH------hccccccHHHHHHHHhhhHHHHcCc
Confidence 35666666665553 2222 1111 112 233334454 56665544 4455566665 7888889999
Q ss_pred cHHHHHHHHHHHhccCCCh
Q 023284 170 WEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 170 ~~eeL~~~~~~l~~dp~n~ 188 (284)
-++|...|.++++.++++.
T Consensus 175 k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 175 KQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHHHHHHHHHccCChH
Confidence 9999999999999986654
No 335
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=21.08 E-value=8.6e+02 Score=24.48 Aligned_cols=136 Identities=12% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKEL 140 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel 140 (284)
+++-.+||...++- ..+......-..|+.+|...++ .-..-..+++.++.++|..-..-.+-..+... ......-+
T Consensus 322 ~~~l~eal~~~e~~-c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~--~~~~~~Ll 398 (547)
T PF14929_consen 322 GGRLKEALNELEKF-CISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK--DYSAEQLL 398 (547)
T ss_pred cccHHHHHHHHHHh-ccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh--HHHHHHHH
Confidence 34446666554431 1244445555667788888874 34566789999999999987765444433332 11122333
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHH-ccCcHHHHHHHHHH-------Hhc--cCCChHHHHHHHHHHhcC
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQA-LGGWEDELDYCQML-------LGE--DIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~-l~~~~eeL~~~~~~-------l~~--dp~n~sAW~~r~~ll~~l 201 (284)
+.+.--+.+.|. +..|---..++.+ .++++.--+....+ +.- +-.|..||..+...+.++
T Consensus 399 e~i~~~l~~~~s-~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 399 EMIALHLDLVPS-HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred HHHHHHhhcCCC-chHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 444444556644 4455554444444 66665222222333 222 345668898887776654
No 336
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.87 E-value=1.7e+02 Score=20.44 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhC
Q 023284 137 NKELQFTKKMLSLD 150 (284)
Q Consensus 137 ~eel~~~~~aL~~d 150 (284)
..++.+..++++.|
T Consensus 4 ~~a~~l~~~Av~~D 17 (75)
T cd02656 4 QQAKELIKQAVKED 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 337
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=20.54 E-value=3.5e+02 Score=19.72 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
.+..+.+.+...+|. +++++..++.++++
T Consensus 42 ~all~lA~~~~~~G~--~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 42 YALLNLAELHRRFGH--YEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 455666777777888 88888888888875
No 338
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=20.38 E-value=1.7e+02 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhCc
Q 023284 136 VNKELQFTKKMLSLDA 151 (284)
Q Consensus 136 ~~eel~~~~~aL~~dp 151 (284)
+.+++.++.++++.|-
T Consensus 5 ~~~A~~li~~Av~~d~ 20 (77)
T smart00745 5 LSKAKELISKALKADE 20 (77)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
Done!