Query 023284
Match_columns 284
No_of_seqs 238 out of 1401
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_A Farnesyltransferase alp 100.0 8.2E-59 2.8E-63 430.3 25.3 233 11-245 16-258 (349)
2 3dra_A Protein farnesyltransfe 100.0 2E-55 6.8E-60 402.1 25.9 225 20-247 4-238 (306)
3 3dss_A Geranylgeranyl transfer 100.0 7.5E-44 2.6E-48 328.3 25.0 224 47-270 28-275 (331)
4 2h6f_A Protein farnesyltransfe 100.0 6.4E-42 2.2E-46 321.5 27.7 243 11-259 59-302 (382)
5 1dce_A Protein (RAB geranylger 100.0 2.7E-40 9.3E-45 325.0 24.2 201 44-244 24-241 (567)
6 3dra_A Protein farnesyltransfe 100.0 7.5E-39 2.6E-43 292.4 17.6 209 40-260 58-285 (306)
7 3dss_A Geranylgeranyl transfer 100.0 8.8E-37 3E-41 281.1 20.6 197 40-239 55-280 (331)
8 3q7a_A Farnesyltransferase alp 100.0 2.8E-34 9.7E-39 265.9 17.5 163 40-204 79-258 (349)
9 1dce_A Protein (RAB geranylger 100.0 2E-30 6.7E-35 254.8 14.8 163 40-204 54-242 (567)
10 2h6f_A Protein farnesyltransfe 100.0 1.2E-27 4.2E-32 224.3 18.7 211 40-259 122-344 (382)
11 2pl2_A Hypothetical conserved 99.9 3.2E-22 1.1E-26 171.6 20.5 188 46-244 2-200 (217)
12 3vtx_A MAMA; tetratricopeptide 99.9 2.1E-21 7.1E-26 160.3 20.0 173 47-229 3-175 (184)
13 4gyw_A UDP-N-acetylglucosamine 99.9 3.8E-20 1.3E-24 186.3 24.0 174 44-220 4-177 (723)
14 4i17_A Hypothetical protein; T 99.8 1E-19 3.5E-24 155.3 19.6 188 49-239 7-224 (228)
15 2pl2_A Hypothetical conserved 99.8 9.3E-20 3.2E-24 156.2 18.8 170 41-221 31-211 (217)
16 1w3b_A UDP-N-acetylglucosamine 99.8 1.5E-19 5E-24 165.8 21.1 160 42-204 60-219 (388)
17 1w3b_A UDP-N-acetylglucosamine 99.8 3.4E-19 1.2E-23 163.3 22.9 193 42-244 162-354 (388)
18 4eqf_A PEX5-related protein; a 99.8 1.2E-19 4.2E-24 164.7 16.5 199 52-262 68-310 (365)
19 4gyw_A UDP-N-acetylglucosamine 99.8 5E-19 1.7E-23 178.3 20.9 168 78-259 4-171 (723)
20 3vtx_A MAMA; tetratricopeptide 99.8 2.5E-18 8.4E-23 141.7 21.2 171 80-264 2-172 (184)
21 2q7f_A YRRB protein; TPR, prot 99.8 3.1E-18 1.1E-22 145.5 22.0 187 42-238 50-236 (243)
22 4abn_A Tetratricopeptide repea 99.8 4.1E-19 1.4E-23 169.9 18.0 190 43-243 96-306 (474)
23 3hym_B Cell division cycle pro 99.8 3.5E-18 1.2E-22 151.2 22.1 206 43-262 84-299 (330)
24 3hym_B Cell division cycle pro 99.8 2.3E-18 7.8E-23 152.4 18.5 190 42-241 118-316 (330)
25 2vq2_A PILW, putative fimbrial 99.8 1.2E-17 4E-22 139.7 21.8 190 44-243 3-196 (225)
26 4eqf_A PEX5-related protein; a 99.8 6.5E-19 2.2E-23 159.9 14.9 196 40-244 90-342 (365)
27 2ho1_A Type 4 fimbrial biogene 99.8 2.3E-17 7.8E-22 141.6 23.8 210 38-261 25-237 (252)
28 3uq3_A Heat shock protein STI1 99.8 1.2E-17 4E-22 142.7 21.4 202 46-262 2-236 (258)
29 2pzi_A Probable serine/threoni 99.8 1.4E-18 4.8E-23 173.6 17.7 186 43-242 388-581 (681)
30 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-17 4.1E-22 141.9 20.6 205 51-269 25-231 (243)
31 1fch_A Peroxisomal targeting s 99.8 1.1E-17 3.7E-22 151.1 21.2 193 42-244 91-345 (368)
32 4gco_A Protein STI-1; structur 99.8 3.5E-18 1.2E-22 134.8 14.5 122 74-198 4-125 (126)
33 3ieg_A DNAJ homolog subfamily 99.8 5.3E-17 1.8E-21 144.7 23.4 199 49-261 3-216 (359)
34 1fch_A Peroxisomal targeting s 99.8 3.5E-17 1.2E-21 147.7 22.2 206 42-261 53-313 (368)
35 3ieg_A DNAJ homolog subfamily 99.8 4.5E-17 1.5E-21 145.2 21.2 185 42-236 30-229 (359)
36 2y4t_A DNAJ homolog subfamily 99.8 5.7E-17 1.9E-21 150.5 22.7 207 41-261 18-239 (450)
37 4ga2_A E3 SUMO-protein ligase 99.8 2.5E-18 8.5E-23 139.3 11.8 145 56-203 4-149 (150)
38 3uq3_A Heat shock protein STI1 99.8 1.1E-17 3.7E-22 142.9 16.0 181 47-237 36-255 (258)
39 2ond_A Cleavage stimulation fa 99.8 5.2E-17 1.8E-21 145.8 20.9 205 41-259 42-267 (308)
40 2vq2_A PILW, putative fimbrial 99.8 8.1E-17 2.8E-21 134.6 20.0 185 42-236 35-223 (225)
41 3cv0_A Peroxisome targeting si 99.8 2.7E-17 9.3E-22 145.2 17.7 205 44-262 50-269 (327)
42 3u4t_A TPR repeat-containing p 99.8 4.5E-17 1.5E-21 141.1 18.6 197 51-260 5-206 (272)
43 2ho1_A Type 4 fimbrial biogene 99.8 1E-16 3.5E-21 137.5 20.7 184 42-235 64-249 (252)
44 2xpi_A Anaphase-promoting comp 99.7 2E-16 7E-21 152.2 23.3 205 43-261 367-578 (597)
45 2xpi_A Anaphase-promoting comp 99.7 1.4E-16 4.7E-21 153.3 22.1 189 42-240 400-595 (597)
46 3urz_A Uncharacterized protein 99.7 1.7E-17 5.7E-22 141.1 13.9 177 49-237 4-198 (208)
47 2y4t_A DNAJ homolog subfamily 99.7 1.9E-16 6.4E-21 146.9 21.7 184 42-235 53-251 (450)
48 4gco_A Protein STI-1; structur 99.7 1.7E-17 5.9E-22 130.8 12.3 122 109-239 4-125 (126)
49 3cv0_A Peroxisome targeting si 99.7 3.9E-17 1.3E-21 144.2 15.7 193 42-244 82-301 (327)
50 3as5_A MAMA; tetratricopeptide 99.7 2.1E-16 7.2E-21 127.7 18.8 173 49-231 8-180 (186)
51 3fp2_A TPR repeat-containing p 99.7 1.5E-16 5.2E-21 150.6 19.9 210 44-261 272-490 (537)
52 4i17_A Hypothetical protein; T 99.7 7.9E-17 2.7E-21 137.2 16.0 156 79-244 3-168 (228)
53 2ond_A Cleavage stimulation fa 99.7 5.9E-16 2E-20 138.9 21.9 183 66-261 33-231 (308)
54 3mkr_A Coatomer subunit epsilo 99.7 8.2E-16 2.8E-20 137.9 21.9 177 45-233 97-273 (291)
55 3u4t_A TPR repeat-containing p 99.7 2.2E-16 7.6E-21 136.7 17.5 193 44-240 32-266 (272)
56 3qky_A Outer membrane assembly 99.7 3.6E-16 1.2E-20 136.2 18.8 187 42-231 8-231 (261)
57 2pzi_A Probable serine/threoni 99.7 5.7E-17 2E-21 161.9 14.8 157 43-203 427-583 (681)
58 4ga2_A E3 SUMO-protein ligase 99.7 1.6E-17 5.5E-22 134.5 8.7 142 92-243 6-148 (150)
59 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-15 7.5E-20 130.1 22.5 148 45-196 39-186 (275)
60 4g1t_A Interferon-induced prot 99.7 1.4E-15 4.9E-20 142.3 22.8 205 49-261 51-275 (472)
61 2gw1_A Mitochondrial precursor 99.7 2.3E-16 7.9E-21 148.1 17.3 203 44-261 266-477 (514)
62 4abn_A Tetratricopeptide repea 99.7 1.7E-16 5.9E-21 151.7 16.4 182 66-262 85-287 (474)
63 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.2E-20 134.9 22.6 185 45-244 61-249 (291)
64 2gw1_A Mitochondrial precursor 99.7 3.9E-16 1.3E-20 146.6 17.8 187 42-238 297-492 (514)
65 3fp2_A TPR repeat-containing p 99.7 1.1E-15 3.7E-20 144.7 20.9 56 42-97 52-107 (537)
66 2vsy_A XCC0866; transferase, g 99.7 1E-15 3.4E-20 148.6 19.2 162 63-234 3-167 (568)
67 3gyz_A Chaperone protein IPGC; 99.7 3.3E-16 1.1E-20 128.0 11.5 127 52-188 12-138 (151)
68 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-14 4.1E-19 125.5 20.9 165 64-239 20-188 (275)
69 3gyz_A Chaperone protein IPGC; 99.7 1.7E-16 5.8E-21 129.7 7.7 116 105-229 23-138 (151)
70 4g1t_A Interferon-induced prot 99.6 1.8E-14 6E-19 134.8 20.6 186 45-239 90-291 (472)
71 2ooe_A Cleavage stimulation fa 99.6 2.8E-14 9.5E-19 137.1 22.0 224 42-279 265-516 (530)
72 2vgx_A Chaperone SYCD; alterna 99.6 7.2E-15 2.5E-19 118.7 15.0 122 71-195 9-130 (148)
73 3urz_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 126.6 12.9 146 41-188 30-191 (208)
74 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.1E-14 1.8E-18 120.6 19.9 171 50-230 5-219 (225)
75 2r5s_A Uncharacterized protein 99.6 2.5E-15 8.4E-20 123.9 10.9 162 51-223 8-172 (176)
76 1p5q_A FKBP52, FK506-binding p 99.6 3.8E-16 1.3E-20 142.9 6.6 161 39-204 93-280 (336)
77 2xcb_A PCRH, regulatory protei 99.6 5.9E-15 2E-19 117.5 12.2 125 70-197 5-129 (142)
78 3qou_A Protein YBBN; thioredox 99.6 1.5E-14 5E-19 129.1 15.7 168 45-222 113-282 (287)
79 3upv_A Heat shock protein STI1 99.6 3.3E-14 1.1E-18 110.1 15.3 118 80-200 1-124 (126)
80 2hr2_A Hypothetical protein; a 99.6 1E-14 3.6E-19 120.2 12.2 109 82-193 10-141 (159)
81 3as5_A MAMA; tetratricopeptide 99.6 1.1E-13 3.8E-18 111.5 17.6 146 42-190 35-180 (186)
82 1qqe_A Vesicular transport pro 99.6 6.4E-14 2.2E-18 124.9 17.8 177 46-232 30-236 (292)
83 2vgx_A Chaperone SYCD; alterna 99.6 1.8E-14 6.2E-19 116.3 12.7 121 105-234 8-128 (148)
84 1ouv_A Conserved hypothetical 99.6 9E-13 3.1E-17 115.0 23.9 144 46-200 3-158 (273)
85 3qky_A Outer membrane assembly 99.6 6.7E-14 2.3E-18 121.7 16.3 177 75-261 7-223 (261)
86 2hr2_A Hypothetical protein; a 99.6 1.1E-14 3.7E-19 120.2 10.4 106 118-232 11-139 (159)
87 3sz7_A HSC70 cochaperone (SGT) 99.6 7.1E-14 2.4E-18 113.4 15.1 118 78-198 6-123 (164)
88 2vsy_A XCC0866; transferase, g 99.6 9.6E-14 3.3E-18 134.6 17.3 152 41-195 15-169 (568)
89 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.5E-15 5.3E-20 144.6 3.9 162 38-204 213-401 (457)
90 3qou_A Protein YBBN; thioredox 99.5 4.1E-13 1.4E-17 119.7 18.7 160 75-244 109-270 (287)
91 2r5s_A Uncharacterized protein 99.5 8.1E-14 2.8E-18 114.7 13.0 167 79-260 2-171 (176)
92 1ouv_A Conserved hypothetical 99.5 3.9E-12 1.3E-16 110.8 24.5 197 46-262 35-251 (273)
93 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.1E-18 120.8 14.1 169 45-223 23-223 (311)
94 2ooe_A Cleavage stimulation fa 99.5 4.8E-13 1.7E-17 128.5 19.3 182 66-261 255-453 (530)
95 2e2e_A Formate-dependent nitri 99.5 1.6E-13 5.6E-18 112.2 13.5 127 63-192 24-153 (177)
96 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 4.2E-17 99.4 17.4 135 50-187 2-136 (136)
97 2fo7_A Synthetic consensus TPR 99.5 2E-12 7E-17 98.2 18.6 135 84-228 2-136 (136)
98 2xcb_A PCRH, regulatory protei 99.5 5.9E-13 2E-17 105.8 15.1 124 41-167 10-133 (142)
99 1p5q_A FKBP52, FK506-binding p 99.5 3.7E-13 1.3E-17 123.0 15.8 139 42-183 140-294 (336)
100 3upv_A Heat shock protein STI1 99.5 9.6E-13 3.3E-17 101.7 15.6 119 46-167 1-125 (126)
101 2vyi_A SGTA protein; chaperone 99.5 7.5E-13 2.6E-17 100.6 14.5 123 78-203 7-129 (131)
102 2e2e_A Formate-dependent nitri 99.5 6.8E-13 2.3E-17 108.4 14.7 130 99-237 25-157 (177)
103 3sz7_A HSC70 cochaperone (SGT) 99.5 1.3E-12 4.5E-17 105.9 15.8 118 44-164 6-123 (164)
104 2lni_A Stress-induced-phosphop 99.5 6.8E-13 2.3E-17 101.8 13.4 120 45-167 12-131 (133)
105 1qqe_A Vesicular transport pro 99.5 3.8E-13 1.3E-17 119.9 13.2 184 48-239 76-284 (292)
106 2yhc_A BAMD, UPF0169 lipoprote 99.5 4.2E-12 1.4E-16 108.6 19.0 165 82-260 3-211 (225)
107 1hh8_A P67PHOX, NCF-2, neutrop 99.5 3.2E-12 1.1E-16 106.8 17.9 135 52-192 9-159 (213)
108 3edt_B KLC 2, kinesin light ch 99.5 1.2E-12 4E-17 112.5 15.2 136 45-183 39-198 (283)
109 3q49_B STIP1 homology and U bo 99.5 2.5E-12 8.5E-17 100.0 15.3 118 77-197 3-125 (137)
110 1a17_A Serine/threonine protei 99.4 5.7E-12 2E-16 100.4 17.4 132 49-183 13-146 (166)
111 2vyi_A SGTA protein; chaperone 99.4 5.2E-12 1.8E-16 95.9 16.3 126 42-170 5-130 (131)
112 4a1s_A PINS, partner of inscut 99.4 1.5E-12 5.2E-17 119.2 15.7 203 46-262 45-292 (411)
113 3nf1_A KLC 1, kinesin light ch 99.4 9.3E-13 3.2E-17 115.1 13.4 173 45-227 65-310 (311)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.3E-12 7.7E-17 107.7 15.1 136 83-231 6-157 (213)
115 1a17_A Serine/threonine protei 99.4 5.5E-12 1.9E-16 100.5 16.5 131 82-222 12-144 (166)
116 2lni_A Stress-induced-phosphop 99.4 6.5E-12 2.2E-16 96.2 16.2 122 78-202 11-132 (133)
117 1elw_A TPR1-domain of HOP; HOP 99.4 1.1E-11 3.9E-16 92.4 16.5 114 82-198 3-116 (118)
118 3edt_B KLC 2, kinesin light ch 99.4 1.1E-12 3.9E-17 112.5 12.4 162 65-236 17-219 (283)
119 1hxi_A PEX5, peroxisome target 99.4 2.1E-12 7.1E-17 100.6 12.4 101 85-188 19-119 (121)
120 3rkv_A Putative peptidylprolyl 99.4 2.8E-12 9.5E-17 103.7 13.3 116 82-200 10-144 (162)
121 2c2l_A CHIP, carboxy terminus 99.4 1.3E-12 4.4E-17 116.2 12.3 109 46-157 1-109 (281)
122 3sf4_A G-protein-signaling mod 99.4 3E-12 1E-16 116.1 14.4 199 49-261 9-255 (406)
123 3q49_B STIP1 homology and U bo 99.4 4E-12 1.4E-16 98.8 13.1 120 112-240 3-127 (137)
124 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.7E-12 9.1E-17 122.2 14.2 131 42-175 261-406 (457)
125 2dba_A Smooth muscle cell asso 99.4 1.3E-11 4.5E-16 96.4 15.6 116 42-160 21-139 (148)
126 2kck_A TPR repeat; tetratricop 99.4 2.4E-12 8.3E-17 95.4 10.7 108 78-188 1-111 (112)
127 1na0_A Designed protein CTPR3; 99.4 2.2E-11 7.4E-16 91.6 16.1 119 78-199 3-122 (125)
128 4gcn_A Protein STI-1; structur 99.4 3.4E-12 1.2E-16 100.1 11.8 104 81-187 6-116 (127)
129 3rkv_A Putative peptidylprolyl 99.4 2.7E-12 9.4E-17 103.7 10.9 117 117-242 10-145 (162)
130 1zu2_A Mitochondrial import re 99.4 3.2E-12 1.1E-16 105.2 11.2 102 65-193 18-130 (158)
131 2fbn_A 70 kDa peptidylprolyl i 99.4 1.5E-12 5.1E-17 108.8 9.4 134 66-202 21-170 (198)
132 2fbn_A 70 kDa peptidylprolyl i 99.4 4.4E-13 1.5E-17 112.0 6.1 149 86-244 7-171 (198)
133 3ulq_A Response regulator aspa 99.4 7.8E-12 2.7E-16 114.6 14.8 179 55-243 109-317 (383)
134 3sf4_A G-protein-signaling mod 99.4 6.8E-12 2.3E-16 113.7 13.9 204 45-262 83-336 (406)
135 2kck_A TPR repeat; tetratricop 99.4 8.6E-12 2.9E-16 92.4 12.0 108 113-229 1-111 (112)
136 2c2l_A CHIP, carboxy terminus 99.4 9.7E-12 3.3E-16 110.5 14.1 106 80-188 1-106 (281)
137 1hxi_A PEX5, peroxisome target 99.4 4.6E-12 1.6E-16 98.6 10.5 103 119-230 18-120 (121)
138 3ro2_A PINS homolog, G-protein 99.3 1.3E-11 4.3E-16 108.1 14.4 197 51-261 7-251 (338)
139 4a1s_A PINS, partner of inscut 99.3 8.9E-12 3E-16 114.1 13.7 204 45-262 122-372 (411)
140 2if4_A ATFKBP42; FKBP-like, al 99.3 7.2E-13 2.5E-17 121.2 6.1 160 45-230 175-334 (338)
141 1elw_A TPR1-domain of HOP; HOP 99.3 3.5E-11 1.2E-15 89.7 14.2 114 117-239 3-116 (118)
142 1wao_1 Serine/threonine protei 99.3 5.9E-13 2E-17 127.6 5.3 136 55-193 12-160 (477)
143 4f3v_A ESX-1 secretion system 99.3 3.8E-13 1.3E-17 120.8 3.2 181 41-233 32-245 (282)
144 4gcn_A Protein STI-1; structur 99.3 1.3E-11 4.5E-16 96.7 11.6 103 117-228 7-116 (127)
145 3ro2_A PINS homolog, G-protein 99.3 1.5E-11 5.1E-16 107.6 12.6 205 45-263 79-333 (338)
146 2if4_A ATFKBP42; FKBP-like, al 99.3 8.7E-12 3E-16 114.0 10.8 103 84-189 231-334 (338)
147 2dba_A Smooth muscle cell asso 99.3 1.4E-10 4.7E-15 90.5 16.3 122 76-200 21-145 (148)
148 3ulq_A Response regulator aspa 99.3 4.5E-11 1.5E-15 109.5 15.2 209 45-265 139-371 (383)
149 1zu2_A Mitochondrial import re 99.3 2.9E-11 1E-15 99.4 12.2 89 40-154 27-125 (158)
150 1na0_A Designed protein CTPR3; 99.3 2.2E-10 7.5E-15 86.0 16.2 117 49-168 9-125 (125)
151 2ifu_A Gamma-SNAP; membrane fu 99.3 4.5E-11 1.5E-15 107.1 14.3 176 45-232 29-231 (307)
152 1wao_1 Serine/threonine protei 99.3 5.4E-13 1.9E-17 127.9 1.8 138 83-230 6-156 (477)
153 1elr_A TPR2A-domain of HOP; HO 99.3 1.4E-10 4.7E-15 88.1 13.9 117 80-200 1-124 (131)
154 2qfc_A PLCR protein; TPR, HTH, 99.3 6.4E-10 2.2E-14 98.5 20.4 166 49-224 75-266 (293)
155 2xev_A YBGF; tetratricopeptide 99.2 3.6E-10 1.2E-14 86.6 15.1 110 85-197 4-119 (129)
156 3k9i_A BH0479 protein; putativ 99.2 3.1E-11 1.1E-15 92.5 7.8 96 100-197 6-104 (117)
157 3q15_A PSP28, response regulat 99.2 5.6E-10 1.9E-14 102.2 16.5 163 55-227 107-293 (378)
158 3k9i_A BH0479 protein; putativ 99.2 8E-11 2.7E-15 90.2 8.8 103 63-168 4-109 (117)
159 3rjv_A Putative SEL1 repeat pr 99.2 9.8E-10 3.4E-14 93.2 16.0 180 67-260 4-195 (212)
160 1ihg_A Cyclophilin 40; ppiase 99.2 1.9E-10 6.5E-15 106.7 12.5 118 83-203 223-356 (370)
161 3u3w_A Transcriptional activat 99.2 2.3E-09 7.9E-14 94.9 18.4 155 61-224 87-266 (293)
162 1elr_A TPR2A-domain of HOP; HO 99.1 1.2E-09 4E-14 82.8 14.0 118 47-168 2-126 (131)
163 1ihg_A Cyclophilin 40; ppiase 99.1 4.4E-10 1.5E-14 104.2 13.8 125 47-174 221-361 (370)
164 4f3v_A ESX-1 secretion system 99.1 2.5E-11 8.6E-16 108.9 4.8 184 62-260 19-235 (282)
165 2xev_A YBGF; tetratricopeptide 99.1 1.1E-09 3.9E-14 83.7 13.5 109 120-237 4-118 (129)
166 3q15_A PSP28, response regulat 99.1 3.9E-09 1.3E-13 96.5 16.1 206 46-263 138-366 (378)
167 3rjv_A Putative SEL1 repeat pr 99.0 1E-08 3.6E-13 86.8 17.0 178 46-235 15-206 (212)
168 2kat_A Uncharacterized protein 99.0 2.4E-09 8.3E-14 81.1 11.2 84 102-187 3-86 (115)
169 2kat_A Uncharacterized protein 99.0 6.4E-09 2.2E-13 78.7 13.1 86 67-155 3-88 (115)
170 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-08 6E-13 89.1 17.5 171 77-261 69-265 (293)
171 2l6j_A TPR repeat-containing p 99.0 5.1E-10 1.8E-14 83.3 6.0 88 83-173 4-97 (111)
172 3gw4_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 83.9 13.5 160 63-232 6-184 (203)
173 2ifu_A Gamma-SNAP; membrane fu 99.0 5E-09 1.7E-13 93.7 12.2 139 49-192 76-232 (307)
174 2l6j_A TPR repeat-containing p 98.9 4.7E-09 1.6E-13 77.9 9.6 86 117-204 3-94 (111)
175 1na3_A Designed protein CTPR2; 98.9 6.7E-09 2.3E-13 74.4 9.8 80 117-198 8-87 (91)
176 2xm6_A Protein corresponding t 98.9 2.7E-07 9.3E-12 87.3 23.3 180 66-261 204-395 (490)
177 3e4b_A ALGK; tetratricopeptide 98.9 8.3E-08 2.8E-12 90.8 19.2 191 51-258 178-383 (452)
178 2kc7_A BFR218_protein; tetratr 98.9 4.6E-09 1.6E-13 77.1 8.2 91 88-189 5-96 (99)
179 1na3_A Designed protein CTPR2; 98.9 2.9E-08 9.8E-13 71.0 11.9 85 81-168 7-91 (91)
180 2xm6_A Protein corresponding t 98.9 5.9E-07 2E-11 85.0 24.0 175 46-240 36-230 (490)
181 3ma5_A Tetratricopeptide repea 98.9 7.1E-09 2.4E-13 77.3 8.5 75 113-189 2-76 (100)
182 2kc7_A BFR218_protein; tetratr 98.8 1.1E-08 3.9E-13 75.0 8.6 92 122-230 4-96 (99)
183 3ro3_A PINS homolog, G-protein 98.8 5E-08 1.7E-12 75.8 12.7 135 49-186 9-161 (164)
184 3e4b_A ALGK; tetratricopeptide 98.8 1.7E-07 5.8E-12 88.6 18.6 198 48-262 140-351 (452)
185 3u3w_A Transcriptional activat 98.8 3.6E-08 1.2E-12 87.1 12.7 127 55-184 121-267 (293)
186 1hz4_A MALT regulatory protein 98.8 1.2E-07 4.1E-12 85.8 15.6 166 50-225 15-204 (373)
187 3ro3_A PINS homolog, G-protein 98.8 7.3E-08 2.5E-12 74.9 11.9 135 83-227 9-161 (164)
188 3ma5_A Tetratricopeptide repea 98.8 3.8E-08 1.3E-12 73.3 9.5 77 78-157 2-78 (100)
189 3gw4_A Uncharacterized protein 98.8 1.1E-07 3.7E-12 77.9 12.8 141 47-190 24-183 (203)
190 1xi4_A Clathrin heavy chain; a 98.6 3.3E-06 1.1E-10 89.4 21.2 175 47-242 1103-1327(1630)
191 1hz4_A MALT regulatory protein 98.6 5.7E-06 1.9E-10 74.6 19.4 165 53-227 97-285 (373)
192 4e6h_A MRNA 3'-END-processing 98.6 1.7E-06 5.7E-11 86.4 16.9 187 42-238 336-550 (679)
193 3mv2_B Coatomer subunit epsilo 98.6 1.9E-06 6.4E-11 78.1 15.6 173 49-234 100-292 (310)
194 3ly7_A Transcriptional activat 98.5 4.2E-06 1.4E-10 77.5 15.4 120 66-189 216-345 (372)
195 4e6h_A MRNA 3'-END-processing 98.4 1E-05 3.4E-10 80.8 18.9 180 49-237 302-513 (679)
196 3ly7_A Transcriptional activat 98.4 5.4E-06 1.8E-10 76.7 14.4 155 74-238 185-352 (372)
197 4b4t_Q 26S proteasome regulato 98.3 7E-06 2.4E-10 75.3 12.0 190 62-261 17-244 (434)
198 1b89_A Protein (clathrin heavy 98.2 6.9E-07 2.3E-11 84.7 4.5 154 49-237 32-185 (449)
199 1xi4_A Clathrin heavy chain; a 98.2 4.3E-05 1.5E-09 81.0 17.5 109 56-184 1056-1164(1630)
200 3mv2_B Coatomer subunit epsilo 98.1 8.1E-05 2.8E-09 67.4 15.8 155 68-235 85-261 (310)
201 1pc2_A Mitochondria fission pr 98.0 4.9E-05 1.7E-09 61.7 11.0 96 104-199 18-116 (152)
202 3bee_A Putative YFRE protein; 98.0 3.6E-05 1.2E-09 57.0 9.1 73 114-186 2-75 (93)
203 1b89_A Protein (clathrin heavy 98.0 1.2E-05 4.3E-10 76.1 7.6 169 50-243 123-296 (449)
204 1klx_A Cysteine rich protein B 98.0 0.00027 9.1E-09 55.5 14.3 114 66-192 12-133 (138)
205 3bee_A Putative YFRE protein; 97.9 7.2E-05 2.5E-09 55.3 9.8 72 79-152 2-75 (93)
206 1klx_A Cysteine rich protein B 97.9 0.00022 7.6E-09 56.0 12.6 113 99-224 10-126 (138)
207 4b4t_Q 26S proteasome regulato 97.9 5.5E-05 1.9E-09 69.2 9.7 169 45-223 51-244 (434)
208 1pc2_A Mitochondria fission pr 97.7 0.00048 1.6E-08 55.8 12.0 98 67-166 16-117 (152)
209 3u64_A Protein TP_0956; tetrat 97.7 0.00036 1.2E-08 62.4 12.1 110 76-187 145-273 (301)
210 3u64_A Protein TP_0956; tetrat 97.6 0.00074 2.5E-08 60.4 12.8 113 109-228 143-273 (301)
211 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0013 4.6E-08 48.9 10.7 72 123-196 10-88 (104)
212 2uy1_A Cleavage stimulation fa 97.4 0.0083 2.8E-07 57.3 17.3 134 66-204 196-370 (493)
213 2v5f_A Prolyl 4-hydroxylase su 97.3 0.004 1.4E-07 46.2 11.7 76 85-163 7-89 (104)
214 3n71_A Histone lysine methyltr 97.2 0.0033 1.1E-07 60.2 12.3 124 61-187 321-468 (490)
215 2uy1_A Cleavage stimulation fa 97.1 0.02 6.9E-07 54.5 16.8 165 44-216 208-412 (493)
216 3n71_A Histone lysine methyltr 96.8 0.0036 1.2E-07 59.9 9.2 86 95-183 321-422 (490)
217 1nzn_A CGI-135 protein, fissio 96.8 0.014 4.9E-07 45.5 10.5 93 106-198 23-118 (126)
218 3qww_A SET and MYND domain-con 96.8 0.0039 1.3E-07 58.8 8.6 83 99-183 313-411 (433)
219 3qww_A SET and MYND domain-con 96.6 0.0072 2.5E-07 56.9 8.9 87 62-151 311-413 (433)
220 1nzn_A CGI-135 protein, fissio 95.8 0.088 3E-06 41.0 10.0 96 69-166 21-120 (126)
221 3qwp_A SET and MYND domain-con 95.8 0.025 8.5E-07 53.0 8.2 84 99-184 302-401 (429)
222 3qwp_A SET and MYND domain-con 95.7 0.065 2.2E-06 50.2 10.8 97 130-230 299-411 (429)
223 1y8m_A FIS1; mitochondria, unk 95.6 0.23 7.9E-06 39.4 11.9 83 116-198 37-121 (144)
224 3o48_A Mitochondria fission 1 95.5 0.12 4E-06 40.7 9.9 79 119-197 41-121 (134)
225 3o48_A Mitochondria fission 1 95.2 0.41 1.4E-05 37.6 12.0 66 99-166 58-124 (134)
226 4h7y_A Dual specificity protei 95.0 0.4 1.4E-05 38.6 11.6 41 41-81 5-51 (161)
227 1y8m_A FIS1; mitochondria, unk 94.8 1.1 3.8E-05 35.5 13.8 79 85-165 41-122 (144)
228 4g26_A Pentatricopeptide repea 91.7 8.2 0.00028 36.4 16.9 115 66-183 87-204 (501)
229 4g26_A Pentatricopeptide repea 91.7 9.1 0.00031 36.1 21.1 167 60-237 37-218 (501)
230 4h7y_A Dual specificity protei 91.4 3 0.0001 33.5 11.2 114 76-192 6-132 (161)
231 4gns_B Protein CSD3, chitin bi 90.4 2.5 8.5E-05 42.4 12.2 114 62-178 262-395 (754)
232 1ya0_A SMG-7 transcript varian 85.3 6 0.0002 37.6 10.9 65 136-200 168-232 (497)
233 4gns_B Protein CSD3, chitin bi 81.3 14 0.00046 37.1 12.0 104 99-204 264-387 (754)
234 1ya0_A SMG-7 transcript varian 79.4 19 0.00064 34.2 11.8 74 91-166 153-232 (497)
235 2ff4_A Probable regulatory pro 77.5 8.6 0.00029 35.0 8.6 66 165-230 182-247 (388)
236 2ff4_A Probable regulatory pro 75.1 24 0.00083 31.9 11.0 57 87-146 175-231 (388)
237 1zbp_A Hypothetical protein VP 59.1 36 0.0012 29.6 8.1 62 136-197 13-75 (273)
238 3kae_A CDC27, possible protein 52.9 95 0.0033 25.5 10.3 33 79-112 58-90 (242)
239 1zbp_A Hypothetical protein VP 52.8 68 0.0023 27.9 8.8 62 66-128 14-76 (273)
240 4fhn_B Nucleoporin NUP120; pro 50.7 1.2E+02 0.0041 31.5 11.9 102 74-178 833-962 (1139)
241 3ffl_A Anaphase-promoting comp 42.5 40 0.0014 27.1 5.3 63 121-183 21-92 (167)
242 3ffl_A Anaphase-promoting comp 38.1 1.5E+02 0.0052 23.6 8.1 103 62-179 33-147 (167)
243 3kae_A CDC27, possible protein 37.5 1.7E+02 0.0059 24.0 8.5 68 154-228 62-147 (242)
244 1qsa_A Protein (soluble lytic 25.9 4.5E+02 0.015 25.3 12.6 21 161-181 326-346 (618)
245 4b4t_S RPN3, 26S proteasome re 25.1 1.2E+02 0.004 29.0 6.1 140 58-199 145-315 (523)
246 2w2u_A Hypothetical P60 katani 24.6 1.2E+02 0.004 21.1 4.7 19 211-229 42-60 (83)
247 2v6y_A AAA family ATPase, P60 23.0 1.4E+02 0.0047 20.7 4.8 20 210-229 33-52 (83)
248 4fhn_B Nucleoporin NUP120; pro 22.4 4.6E+02 0.016 27.1 10.6 96 109-206 833-956 (1139)
249 3mkq_A Coatomer beta'-subunit; 21.4 5.2E+02 0.018 24.4 14.3 78 90-175 659-744 (814)
No 1
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=8.2e-59 Score=430.30 Aligned_cols=233 Identities=37% Similarity=0.725 Sum_probs=221.2
Q ss_pred hccccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHH
Q 023284 11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRR 90 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~ 90 (284)
-.++++||++||+|+||+||||++|++|||+|.|+|+|.++|+++|+++.+++++++||++|+++|.+||+++++|++||
T Consensus 16 ~~~~~~~~~~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~ 95 (349)
T 3q7a_A 16 VTSTYIPMSQRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRF 95 (349)
T ss_dssp ---CCCCTTSCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccCCccCcccCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 91 QIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL-G-TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 91 ~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l-~-~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
.+|..++..+++||++++.+|..+||||++|+||+|++..+ + . +++||++++++|++||+|++||+||+|++.+++
T Consensus 96 ~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~--~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 96 SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD--PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC--CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999997799999999999999999999999999999999 7 6 899999999999999999999999999999999
Q ss_pred CcH--------HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 169 GWE--------DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 169 ~~~--------eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
.++ +|+++++++|+.||+|+|||+||++++.++++......++++|+++++++|.++|+|+|+|+|+++++.
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 988 999999999999999999999999999999875434456899999999999999999999999999999
Q ss_pred cCCcc
Q 023284 241 DDTES 245 (284)
Q Consensus 241 ~~~~~ 245 (284)
+.+.+
T Consensus 254 ~~~~~ 258 (349)
T 3q7a_A 254 HFSLP 258 (349)
T ss_dssp HTTCC
T ss_pred hcCCC
Confidence 88776
No 2
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2e-55 Score=402.10 Aligned_cols=225 Identities=31% Similarity=0.576 Sum_probs=212.6
Q ss_pred CCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-h
Q 023284 20 QRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH-T 98 (284)
Q Consensus 20 ~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~-~ 98 (284)
.+|+|+||+|||+++|++|||+|.|+++|.++++++++++.+++++++||++|+++|.+||+++|||++||.+|..++ .
T Consensus 4 ~~~~~~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~ 83 (306)
T 3dra_A 4 SKYDYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNR 83 (306)
T ss_dssp CSSCCTTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTS
T ss_pred CCCCCCCCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHH----HHh---CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVA----EKL---GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll----~~l---~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
.+++||++++.+|..+||+|++|+||++++ ..+ +. +++|+++++++|++||+|||||+||+|++.+++.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~--~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD--PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC--THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC
Confidence 799999999999999999999999999999 666 55 899999999999999999999999999999999998
Q ss_pred --HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC
Q 023284 172 --DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI 247 (284)
Q Consensus 172 --eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~ 247 (284)
+|+++++++|+.||+|+|||+||++++.++++... ..++++|+++++++|.++|+|+|+|+|+++++.+.++.+.
T Consensus 162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~-~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT-DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC-HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGG
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch-hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChH
Confidence 99999999999999999999999999999875321 2357999999999999999999999999999999886543
No 3
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=7.5e-44 Score=328.28 Aligned_cols=224 Identities=24% Similarity=0.423 Sum_probs=197.7
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC---------HHHHHHHHHHHHHhCCCC
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~---------~~~eL~~~~~~l~~~pkn 117 (284)
.|..+++++++...+++++++||++|+++|.+||+++|||++||.+|..++.. +++||.+++.+|..+|||
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn 107 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 107 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC
Confidence 56678889999999999999999999999999999999999999999998853 789999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-cHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-WEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
|++|+||+|++..++...+++|+++|+++|++||+|||||+||+|++..++. +++|+++++++|+.||+|+|||+||++
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999985448999999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHhcCCCCch-------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc-c-C-----CCChhhHHHHHhhhhc
Q 023284 197 VVTRSPLLGG-------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE-S-W-----INDPRMLLSVFESFEY 262 (284)
Q Consensus 197 ll~~l~~~~~-------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~-~-~-----~~~~~~~~~~~~~~~~ 262 (284)
++..+....+ ....+++|+++++++|.++|+|+|+|+|+++++..... + + ....+.+.+|.+.|+-
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 9988743211 12457999999999999999999999999999987622 1 1 2245777788888766
Q ss_pred cccccccc
Q 023284 263 QKQLCFCS 270 (284)
Q Consensus 263 ~~~~~~~~ 270 (284)
..+-.||-
T Consensus 268 ~pd~~w~l 275 (331)
T 3dss_A 268 EPENKWCL 275 (331)
T ss_dssp CTTCHHHH
T ss_pred CcccchHH
Confidence 66668884
No 4
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=6.4e-42 Score=321.49 Aligned_cols=243 Identities=46% Similarity=0.871 Sum_probs=225.5
Q ss_pred hccccccCCCCCCCCCccccCCCCCCCCcceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHH
Q 023284 11 QEAERLPLSQRPEWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRR 90 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~dv~pi~~~~~~~~~~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~ 90 (284)
+.+++++|+++++|.||+|+++++|++|+++|.++|++.++|.+++.++.+.+++++|+++++++|.++|+++++|++||
T Consensus 59 ~~~~~~~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g 138 (382)
T 2h6f_A 59 DSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 138 (382)
T ss_dssp TSTTCCCGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCccccccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 91 QIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 91 ~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
.++..+|+++++|+.+++++|.++|+++.+|++||+++..+|+ +++|+.+++++|++||+|+++|++||+++..+|++
T Consensus 139 ~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 139 VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 9999999559999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCC
Q 023284 171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL-GGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWIND 249 (284)
Q Consensus 171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~-~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~ 249 (284)
++|+++++++|+++|+|.+||++||.++..++.. ++ +++++|+++++++|.++|++.++|+++++++...+ ..++
T Consensus 217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e--A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g--~~~~ 292 (382)
T 2h6f_A 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR--AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG--LSKY 292 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH--HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC--GGGC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC--ccch
Confidence 9999999999999999999999999999995443 32 34567789999999999999999999999998854 3456
Q ss_pred hhhHHHHHhh
Q 023284 250 PRMLLSVFES 259 (284)
Q Consensus 250 ~~~~~~~~~~ 259 (284)
++++..+.+.
T Consensus 293 ~~a~~~~~~~ 302 (382)
T 2h6f_A 293 PNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655554
No 5
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=2.7e-40 Score=324.95 Aligned_cols=201 Identities=24% Similarity=0.463 Sum_probs=185.7
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhC---------HHHHHHHHHHHHHhC
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFVGRIAKSN 114 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~---------~~~eL~~~~~~l~~~ 114 (284)
--..|..++++++++...++++++|+++|+++|.+||++|+||++||.++..++.+ +++||+++++++..+
T Consensus 24 k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 24 KLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999999999999999999999999999954 999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhccCCChHHHHH
Q 023284 115 SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 115 pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
||+|++|+||+|++.+++...+++|+++++++|++||+|+|||+||+|++.+++ .+++|+++++++|+.||+|+|||+|
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 999999999999999999423799999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhcCCCCch-------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 194 RYFVVTRSPLLGG-------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 194 r~~ll~~l~~~~~-------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
|++++.++....+ ....+++|+++++++|.++|+|+|+|+|+++++...++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999988643311 12457999999999999999999999999999998765
No 6
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=7.5e-39 Score=292.39 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=177.0
Q ss_pred ceeecChhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHhh--hCHHHHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDE--RSSRSFQLTKEAICLNPGNYTVWHFRRQII----ETLH--TDLQDELAFVGRIA 111 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~--~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L----~~l~--~~~~~eL~~~~~~l 111 (284)
..|.+||++.+||++||.++..++ ..+++|++++.+|.+||++|++|+|||++| ..++ .++++||++++++|
T Consensus 58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 678999999999999999999988 779999999999999999999999999999 6662 36899999999999
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCcCChhHHhHHHHHHHHccC------cHHHHHHHHHHHhc
Q 023284 112 KSNSKNYQLWHHRRWVAEKLGTGAVN--KELQFTKKMLSLDAKNYHAWSYRQWVLQALGG------WEDELDYCQMLLGE 183 (284)
Q Consensus 112 ~~~pkn~~aW~hR~~ll~~l~~~~~~--eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~------~~eeL~~~~~~l~~ 183 (284)
..+||||++|+||+|++.++|. ++ +|+++++++|++||+|+|||+||++++..++. +++|+++++++|.+
T Consensus 138 ~~~pkny~aW~~R~~vl~~l~~--~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 138 SSDPKNHHVWSYRKWLVDTFDL--HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhcc--cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999998 77 99999999999999999999999999999987 89999999999999
Q ss_pred cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC---CCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN---PENESPWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~---P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
+|+|.|||+|+++++.++++.. ++..+++.+++.++ |.+..+|.++.-++.+. ++..+++.+|...+
T Consensus 216 ~p~n~SaW~y~~~ll~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~----~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 216 CPQNPSTWNYLLGIHERFDRSI------TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ----KKYNESRTVYDLLK 285 (306)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCG------GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHhcCCCh------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHH
Confidence 9999999999999999988742 11234555555444 55555666665555533 22345555555544
No 7
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=8.8e-37 Score=281.14 Aligned_cols=197 Identities=24% Similarity=0.403 Sum_probs=176.7
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDER----------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVG 108 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~----------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~ 108 (284)
..|.+||++++||++||.++...+. .+++|.+++.+|..+|++|++|+||++++..++. .+++||.+++
T Consensus 55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 4688999999999999999987654 3689999999999999999999999999999985 4899999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------------cCcHHHH
Q 023284 109 RIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------------GGWEDEL 174 (284)
Q Consensus 109 ~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------------~~~~eeL 174 (284)
+++..+|+||+||+||+|++..+|. .+++|+++++++|+.||+|++||+||++++..+ +.+++|+
T Consensus 135 k~l~~dprNy~AW~~R~~vl~~l~~-~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEl 213 (331)
T 3dss_A 135 RFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL 213 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHH
Confidence 9999999999999999999999986 248999999999999999999999999999998 4589999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCc----hhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLG----GLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~----~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
+++.++|.++|+|.|||+|+++++.+..... ....++++|+++++++|+++|++ .|.++..++
T Consensus 214 e~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 214 ELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 9999999999999999998888887663211 12256899999999999999987 899887754
No 8
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=2.8e-34 Score=265.85 Aligned_cols=163 Identities=24% Similarity=0.409 Sum_probs=153.3
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCC
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDER-SSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~-s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn 117 (284)
..|.+||++.++|++||.++...+. .+++|++++.+|..||++|++|++|++++..+ +..+++||++++++|.++|||
T Consensus 79 ~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN 158 (349)
T 3q7a_A 79 IIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN 158 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence 5788999999999999999998874 68999999999999999999999999999998 535899999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHhCcCChhHHhHHHHHHHHccC-------cHHHHHHHHHHHh
Q 023284 118 YQLWHHRRWVAEKLGTGAVN--------KELQFTKKMLSLDAKNYHAWSYRQWVLQALGG-------WEDELDYCQMLLG 182 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~--------eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~-------~~eeL~~~~~~l~ 182 (284)
|+||+||+|++.++|. ++ +|+++++++|++||+|++||+||++++.+++. +++|+++++++|.
T Consensus 159 y~AW~~R~wvl~~l~~--~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 159 YHTWAYLHWLYSHFST--LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999987 55 99999999999999999999999999999987 6899999999999
Q ss_pred ccCCChHHHHHHHHHHhcCCCC
Q 023284 183 EDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 183 ~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
++|+|.|||+|+++++.+.++.
T Consensus 237 ~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 237 LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCC
T ss_pred hCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999887653
No 9
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.97 E-value=2e-30 Score=254.83 Aligned_cols=163 Identities=25% Similarity=0.457 Sum_probs=153.6
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-CHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDER----------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT-DLQDELAFVG 108 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~----------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~-~~~~eL~~~~ 108 (284)
..|.+||++++||++||.++.+.+. .++|+++++++|+.+|++|.||+||++++..++. ++++|+++++
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 4688999999999999999998776 6899999999999999999999999999999983 3799999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------------cCcHHH
Q 023284 109 RIAKSNSKNYQLWHHRRWVAEKLG-TGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------------GGWEDE 173 (284)
Q Consensus 109 ~~l~~~pkn~~aW~hR~~ll~~l~-~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------------~~~~ee 173 (284)
++++.+|+|++||+||+|++..+| . +++|+++++++|+.||+|++||+||+.++..+ +.+++|
T Consensus 134 k~l~~d~~N~~aW~~R~~~l~~l~~~--~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee 211 (567)
T 1dce_A 134 RFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTCCC--HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence 999999999999999999999999 6 99999999999999999999999999999987 457999
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 174 L~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+++++++|.++|.|.|||+|+++++.+.+++
T Consensus 212 l~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999988764
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.2e-27 Score=224.29 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=184.6
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDER-SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY 118 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~-s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~ 118 (284)
-.|.++|++.++|.+++.++...++ .++|+.+++++|.++|+++.+|++||.++..+| ++++|+.+++++|.++|+++
T Consensus 122 ~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g-~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 122 DAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR-DPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCccCH
Confidence 4577999999999999999999987 899999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHH-----HHHHHHHHhccCCChHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDE-----LDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~ee-----L~~~~~~l~~dp~n~sAW~ 192 (284)
++|++||+++..+|+ +++|+.+++++|+++|+|..+|++||.++..++ ..++| +++++++|+++|+|.++|+
T Consensus 201 ~a~~~lg~~~~~~g~--~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~ 278 (382)
T 2h6f_A 201 HAWQHRQWVIQEFKL--WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 278 (382)
T ss_dssp HHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999 999999999999999999999999999999954 44777 6999999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCcc----CCC-ChhhHHHHHhh
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTES----WIN-DPRMLLSVFES 259 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~----~~~-~~~~~~~~~~~ 259 (284)
+++.++...+.. -++++++++.++ ..+|++..++..+..++...++. ..+ ..+++..+.++
T Consensus 279 ~l~~ll~~~g~~-----~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 279 YLKGILQDRGLS-----KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHTTTCGG-----GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcc-----chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 999999887631 136788888887 99999988888887777665321 011 24566666665
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=3.2e-22 Score=171.57 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
|....++...+.++...+..++|+..++++|.++|++..+|..++.++..+| ++++++..+++++..+|.+..+|..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLG-LVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 6667788888888888888899999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHHh-----------CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 126 WVAEKL-----------GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 126 ~ll~~l-----------~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
.++... |+ +++++..++++++++|.+..+|..+|.++..+|++++|+++++++++++ .+..+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 999999 99 9999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
+.++..+|++ ++++..+++++.++|++..++..+..++...++
T Consensus 158 a~~~~~~g~~-------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 158 AELYLSMGRL-------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHTCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 9999999884 889999999999999999999888887776643
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=2.1e-21 Score=160.27 Aligned_cols=173 Identities=8% Similarity=0.037 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRW 126 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ 126 (284)
+.++++...+.+....+..++|+..++++|+++|++..+|..++.++..+| ++++++..+.+++..+|++..+|...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG-LPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 456788888999998888999999999999999999999999999999999 6999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCch
Q 023284 127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGG 206 (284)
Q Consensus 127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~ 206 (284)
+....++ ++.++..+.++++++|.+..+|..+|.++..+|++++|+++++++++++|.+..+|+++|.++..++++
T Consensus 82 ~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-- 157 (184)
T 3vtx_A 82 ANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-- 157 (184)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred HHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH--
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCc
Q 023284 207 LIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 207 ~~~~~~~el~~~~~~i~~~P~ne 229 (284)
++++++++++|+++|+++
T Consensus 158 -----~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 -----DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -----HHHHHHHHHHHHTTHHHH
T ss_pred -----HHHHHHHHHHHhCCccCH
Confidence 889999999999999873
No 13
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=3.8e-20 Score=186.34 Aligned_cols=174 Identities=9% Similarity=0.046 Sum_probs=160.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
-.|++.++++.++.++.+.++.++|+++++++|+++|++..+|+.+|.++..+| ++++|+..++++++++|++..+|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
+|.++..+|+ +++|+++++++++++|++..+|+++|.++..+|++++|+++++++|+++|++..+|.+++.++..+++
T Consensus 83 Lg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHHHHHHHHHH
Q 023284 204 LGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 204 ~~~~~~~~~~el~~~~~ 220 (284)
++++...++++++...+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 85544334444444333
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1e-19 Score=155.28 Aligned_cols=188 Identities=8% Similarity=-0.039 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNP-GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV 127 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP-~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l 127 (284)
+.++...+.++...+..++|+..+++++.++| .+..+|+.++.++..+| ++++++.++++++..+|++..+|..++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 47788888888888888999999999999999 99999999999999999 69999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCCh-------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--ChHHHHHHHHHH
Q 023284 128 AEKLGTGAVNKELQFTKKMLSLDAKNY-------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--NNSAWNQRYFVV 198 (284)
Q Consensus 128 l~~l~~~~~~eel~~~~~aL~~dpkN~-------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--n~sAW~~r~~ll 198 (284)
+..+|+ +++++..++++++++|+|. .+|..+|.+...+|++++|+++++++++++|. +..+|..+|.+.
T Consensus 86 ~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999 9999999999999999999 77999999999999999999999999999999 999999999887
Q ss_pred hcCCCC--ch------------------hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 199 TRSPLL--GG------------------LIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 199 ~~l~~~--~~------------------~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
...+.. +. ....+++++.+++++++++|++..+...+..+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 765542 00 112358899999999999999998877665553
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=9.3e-20 Score=156.15 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=151.5
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-----------hhCHHHHHHHHHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-----------HTDLQDELAFVGR 109 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-----------~~~~~~eL~~~~~ 109 (284)
.|..+|++..++..++.++...+..++|+..+++++.++|++..+|..++.++..+ | ++++++..+++
T Consensus 31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~ 109 (217)
T 2pl2_A 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG-YLEQALSVLKD 109 (217)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH-HHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc-CHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999 8 59999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 110 IAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 110 ~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
++..+|++..+|..+|.++..+|+ +++++.+++++++++ .+..+|..++.++..+|++++|+..++++++.+|++..
T Consensus 110 al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 110 AERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999 999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHH
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEA 221 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~ 221 (284)
++..++.++..+|++ +++++++.++
T Consensus 187 ~~~~la~~~~~~g~~-------~~A~~~~~~~ 211 (217)
T 2pl2_A 187 LRVRYASALLLKGKA-------EEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHHHccCH-------HHHHHHHHHH
Confidence 999999999999885 5566666553
No 16
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=1.5e-19 Score=165.78 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=104.9
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|....++..++.++...+..++|+.++++++.++|++..+|..++.++...| ++++++..+++++..+|++..+|
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTTCTHHH
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHH
Confidence 34556666666666666666666666666666666666666666666666666666 35666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
...+.++..+|+ +++++.++.++++.+|.+..+|+..+.++...|++++|++.++++++++|.+..+|..+|.++...
T Consensus 139 ~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 139 SDLGNLLKALGR--LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHTTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 666666666666 666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred CCC
Q 023284 202 PLL 204 (284)
Q Consensus 202 ~~~ 204 (284)
+.+
T Consensus 217 ~~~ 219 (388)
T 1w3b_A 217 RIF 219 (388)
T ss_dssp TCT
T ss_pred CCH
Confidence 554
No 17
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=3.4e-19 Score=163.34 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=145.5
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|++..++...+.++...+..++|+..+++++.++|++..+|..++.++...| .+++++..+++++..+|++..+|
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR-IFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-CTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcCCHHHH
Confidence 45577777777777777777777777888888888888888888888887777777 47777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
...+.++...|+ +++++..++++++++|.+..+|...+.++...|++++|+++++++++.+|.+..+|+.++.++...
T Consensus 241 ~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGL--IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 777777777777 777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
+++ ++++..+.+++.++|++..+|+.+..++...++
T Consensus 319 g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 319 GNI-------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp TCH-------HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred CCH-------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 663 566777777777777777777666666554443
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.2e-19 Score=164.70 Aligned_cols=199 Identities=10% Similarity=0.023 Sum_probs=147.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
+...+..+...+..++|+.++++++.++|++..+|+.++.++..+| ++++++.++++++..+|++..+|...+.++...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 4444555555555566666666666666666666666666666666 466666666666666666666666666666666
Q ss_pred CC------------------------------------------CCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHc
Q 023284 132 GT------------------------------------------GAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQAL 167 (284)
Q Consensus 132 ~~------------------------------------------~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l 167 (284)
|+ ..+++++.+++++++++|. +..+|...+.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 55 0045555556666666666 788888999999999
Q ss_pred cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC
Q 023284 168 GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI 247 (284)
Q Consensus 168 ~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~ 247 (284)
|++++|+++++++++.+|.+..+|+.++.++...+++ ++++.++.+++.++|++..+|..++.++...+
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---- 295 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS-------EEAVEAYTRALEIQPGFIRSRYNLGISCINLG---- 295 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC----
Confidence 9999999999999999999999999999999888874 78899999999999999999988888777664
Q ss_pred CChhhHHHHHhhhhc
Q 023284 248 NDPRMLLSVFESFEY 262 (284)
Q Consensus 248 ~~~~~~~~~~~~~~~ 262 (284)
++.+++..+.++++-
T Consensus 296 ~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 296 AYREAVSNFLTALSL 310 (365)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 356777777776553
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=5e-19 Score=178.26 Aligned_cols=168 Identities=9% Similarity=-0.003 Sum_probs=154.7
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.+|++..+++.+|.++..+| ++++|+++++++|+++|++..+|+++|.++..+|+ +++|+++++++|+++|++..+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G-~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--~~eA~~~~~~Al~l~P~~~~a~ 80 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQG-NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAY 80 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHH
Confidence 47999999999999999999 59999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
+++|.++..+|++++|+++++++|+++|++..+|+++|.++..+|++ ++++++++++|+++|++..+|..++.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-------~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-------PEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 99999999999999999999999999999999999999999999984 88999999999999999999999988
Q ss_pred HHccCCccCCCChhhHHHHHhh
Q 023284 238 LYKDDTESWINDPRMLLSVFES 259 (284)
Q Consensus 238 ll~~~~~~~~~~~~~~~~~~~~ 259 (284)
++...++ ..++...+.++
T Consensus 154 ~l~~~g~----~~~A~~~~~ka 171 (723)
T 4gyw_A 154 CLQIVCD----WTDYDERMKKL 171 (723)
T ss_dssp HHHHTTC----CTTHHHHHHHH
T ss_pred HHHhccc----HHHHHHHHHHH
Confidence 8876644 44555544444
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.82 E-value=2.5e-18 Score=141.68 Aligned_cols=171 Identities=12% Similarity=0.066 Sum_probs=159.2
Q ss_pred CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
+++.++|+..|.+....| ++++|+++++++++.+|++..+|..++.++..+|+ +++++..+.+++..+|.+..+|..
T Consensus 2 ge~~~iy~~lG~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKG-DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--PNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp --CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCchhHHHHHH
Confidence 467899999999999999 69999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 160 RQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
.+.+....++++.+++.+.+++..+|.+..+|..+|.++..++++ ++++++++++++++|++..+|+.++.++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-------DKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-------hhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8899999999999999999999988888
Q ss_pred ccCCccCCCChhhHHHHHhhhhccc
Q 023284 240 KDDTESWINDPRMLLSVFESFEYQK 264 (284)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (284)
...+ +.++++.++.++|+-+.
T Consensus 152 ~~~g----~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 152 EGKG----LRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHTT----CHHHHHHHHHHHHHTTH
T ss_pred HHCC----CHHHHHHHHHHHHhCCc
Confidence 7765 46789999999877554
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.1e-18 Score=145.53 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=159.7
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|+...++..++.++...+..++|+..+.+++.++|.+..+|...+.++...| ++++++.++++++..+|++..+|
T Consensus 50 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 128 (243)
T 2q7f_A 50 IEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE-MYKEAKDMFEKALRAGMENGDLF 128 (243)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCHHHH
Confidence 44677788888888888888888888999999999999988889888888888888 58889999999999999998898
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS 201 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l 201 (284)
...+.++...|+ +++++.+++++++++|.+..+|...+.++...|++++|+.+++++++.+|.+..+|..++.++...
T Consensus 129 ~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 129 YMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206 (243)
T ss_dssp HHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 888888888888 889999999999999988889988888888889999999999999999998888888888888888
Q ss_pred CCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284 202 PLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238 (284)
Q Consensus 202 ~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l 238 (284)
+++ +++++++.+++.++|++..+|..+..+
T Consensus 207 ~~~-------~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 207 ENR-------EKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp TCT-------THHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred cCH-------HHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 875 567888888888999888888654433
No 22
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=4.1e-19 Score=169.94 Aligned_cols=190 Identities=11% Similarity=0.010 Sum_probs=177.6
Q ss_pred ecChhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERS-SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s-~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
...|+...++..++.++...+.. ++|++++.++++++|++..+|+.++.++...| ++++|+.++++++..+|. ..+|
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~ 173 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG-DVTSAHTCFSGALTHCKN-KVSL 173 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCCC-HHHH
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC-HHHH
Confidence 35667788899999999988888 99999999999999999999999999999999 699999999999999999 7999
Q ss_pred HHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc--------cCcHHHHHHHHHHHhcc
Q 023284 122 HHRRWVAEKL---------GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL--------GGWEDELDYCQMLLGED 184 (284)
Q Consensus 122 ~hR~~ll~~l---------~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l--------~~~~eeL~~~~~~l~~d 184 (284)
...+.++..+ |+ +++++.+++++++++|.+..+|+.++.++..+ |++++|+++++++++++
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRH--VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCChhhhhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 9999999998 88 99999999999999999999999999999999 99999999999999999
Q ss_pred C---CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 185 I---FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 185 p---~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
| .+..+|++++.++..++++ +++++++.++++++|++..+|..+..++...+
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESY-------GEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9 9999999999999999884 88999999999999999999988877766543
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.5e-18 Score=151.16 Aligned_cols=206 Identities=10% Similarity=-0.017 Sum_probs=144.9
Q ss_pred ecChhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDE-RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~-~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
..+|+...++...+.++...+ ..++|+.++++++.++|.+..+|..++.++...| ++++++.++++++..+|++..+|
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTTCSHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccccHHHH
Confidence 345555666666666655555 5566777777777777777777777777666666 46677777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc---------CCChHHHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED---------IFNNSAWN 192 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d---------p~n~sAW~ 192 (284)
...+.++...|+ +++++.+++++++.+|.+..+|...+.++...|++++|+.+++++++.. |.+..+|.
T Consensus 163 ~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 163 LYIGLEYGLTNN--SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 777777666666 7777777777777777777777777777777777777777777777765 55566677
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
.++.++..+++ +++++.++.+++.++|++..+|..++.++...++ ..+++..+.++++-
T Consensus 241 ~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~ 299 (330)
T 3hym_B 241 NLGHVCRKLKK-------YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN----FENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHTTC-------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC----HHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcC-------HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc----HHHHHHHHHHHHcc
Confidence 77766666665 4788999999999999999999888888776543 45666666666543
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-18 Score=152.38 Aligned_cols=190 Identities=11% Similarity=0.022 Sum_probs=178.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+.++|++..++..++.++...+..++|+..+.+++.++|++..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~ 196 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLAERFFSQALSIAPEDPFVM 196 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhCCCChHHH
Confidence 45678888899999998888888899999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLD---------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~d---------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
...+.++...|+ +++++.++.+++++. |.+..+|...+.++...|++++|+.+++++++.+|.+..+|.
T Consensus 197 ~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 197 HEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HHHHHHHHHccc--HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999999 999999999999997 778899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHcc
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKD 241 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~ 241 (284)
..+.++..++++ +++++++.+++.++|++..+|..+..++..
T Consensus 275 ~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 275 AIGYIHSLMGNF-------ENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHTCH-------HHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccH-------HHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 999999998874 789999999999999999999888877743
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.2e-17 Score=139.75 Aligned_cols=190 Identities=11% Similarity=0.031 Sum_probs=174.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
-+|+...++...+.++...+..++|+..+.+++..+|.+..+|...+.++...| ++++++..+++++..+|.+..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK-VNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHH
Confidence 467888999999999988888899999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 124 RRWVAEKL-GTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 124 R~~ll~~l-~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
.+.++... |+ +++++.+++++++ .+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++..
T Consensus 82 l~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 82 YGWFLCGRLNR--PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHTTTCC--HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc--HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999 99 9999999999999 7788899999999999999999999999999999999999999999999988
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCC-CCccHHHHHHHHHccCC
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNP-ENESPWRYLRGLYKDDT 243 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P-~nesaW~y~~~ll~~~~ 243 (284)
.+++ ++++..+.+++..+| ++..+|..+..++...+
T Consensus 160 ~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 160 AGQL-------GDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HTCH-------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred cCCH-------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 8874 788999999999999 88888866655555543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.5e-19 Score=159.94 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=173.9
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh---------------------
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT--------------------- 98 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~--------------------- 98 (284)
-.+..+|+...++..++.++...+..++|+..+++++.++|++..+|..++.++..+|.
T Consensus 90 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (365)
T 4eqf_A 90 AAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence 45677899999999999999999999999999999999999999999999999887762
Q ss_pred ----------------------CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 99 ----------------------DLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 99 ----------------------~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
++++++.++++++..+|. +..+|...+.++...|+ +++++.+++++++++|.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--FNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCH
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence 134455555566666676 88999999999999999 9999999999999999999
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC-------
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE------- 227 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~------- 227 (284)
.+|...+.++...|++++|+++++++++++|.+..+|..++.++..++++ ++++.++.+++.++|+
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY-------REAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-------HHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCcccCCCccc
Confidence 99999999999999999999999999999999999999999999999986 7789999999999988
Q ss_pred -----CccHHHHHHHHHccCCc
Q 023284 228 -----NESPWRYLRGLYKDDTE 244 (284)
Q Consensus 228 -----nesaW~y~~~ll~~~~~ 244 (284)
+..+|..++.++...++
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 321 PHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp ------CHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHHHHHHHHHHHcCc
Confidence 36789988888777654
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=2.3e-17 Score=141.63 Aligned_cols=210 Identities=8% Similarity=-0.064 Sum_probs=184.6
Q ss_pred CcceeecChhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC
Q 023284 38 PVVPIAYKPEF-SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK 116 (284)
Q Consensus 38 ~~~~I~~~p~~-~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk 116 (284)
....-..+|+. ..++...+.++...+..++|+.++++++..+|.+..+|...+.++...| +++++++++++++..+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM-EPKLADEEYRKALASDSR 103 (252)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT
T ss_pred CccccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcC
Confidence 34556678887 7888888888888888899999999999999999999999999999999 699999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS--LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~--~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
+..+|...+.++...|+ +++++.+++++++ .+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...
T Consensus 104 ~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKR--YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhH--HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 99999999999999999 9999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
+.++...+++ ++++.++.+++..+|++..+|..+..++...+ +...+...+.++++
T Consensus 182 a~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 182 ADLLYKEREY-------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFE----DRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTCH-------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCH-------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc----CHHHHHHHHHHHHH
Confidence 9999988874 78899999999999999988877777766553 34455555555443
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-17 Score=142.69 Aligned_cols=202 Identities=9% Similarity=0.067 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------h
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------Y 118 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~ 118 (284)
+...+++...+.++...+..++|+.++++++.++ .+..+|..++.++..+| ++++++.++++++..+|++ .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHH
Confidence 4456778888888888888899999999999999 99999999999999999 6999999999999999988 7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------hCcCChhHHhHHHHHHHHccCcHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLS--------------------------LDAKNYHAWSYRQWVLQALGGWED 172 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~--------------------------~dpkN~~AW~~r~~vl~~l~~~~e 172 (284)
.+|...+.++..+|+ +++++.++.++++ .+|.+..+|..++.++...|++++
T Consensus 80 ~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 80 KSFARIGNAYHKLGD--LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccc--HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 999999999999998 9999999999998 788899999999999999999999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhh
Q 023284 173 ELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRM 252 (284)
Q Consensus 173 eL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~ 252 (284)
|+.+++++++.+|.+..+|..++.++..++++ ++++.++.+++..+|++..+|..++.++...++ ...+
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~----~~~A 226 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE----YASA 226 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh----HHHH
Confidence 99999999999999999999999999988874 789999999999999999999888888777643 4566
Q ss_pred HHHHHhhhhc
Q 023284 253 LLSVFESFEY 262 (284)
Q Consensus 253 ~~~~~~~~~~ 262 (284)
+..+.++++-
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666543
No 29
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.4e-18 Score=173.57 Aligned_cols=186 Identities=8% Similarity=-0.103 Sum_probs=167.7
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAI--------CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN 114 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L--------~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~ 114 (284)
..+|+...+....+ ...+..++|++.+++++ ..+|++..+|..++.++..+| ++++|+..+++++..+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG-DVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC-CHHHHHHHHHHHhccC
Confidence 34566655554433 44556689999999999 999999999999999999999 6999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 115 SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 115 pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
|++..+|+++|.++..+|+ +++|++.++++++++|.+..+|.+++.++..+|++++ +++++++++++|.+..+|+++
T Consensus 464 p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGD--YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccC
Q 023284 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDD 242 (284)
Q Consensus 195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~ 242 (284)
|.++..++++ +++++.++++++++|++..+|..+..++...
T Consensus 541 g~~~~~~g~~-------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 541 ARARSAEGDR-------VGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHHHTTCH-------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHHHHHcCCH-------HHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 9999999984 8899999999999999999998877776543
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=1.2e-17 Score=141.87 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~ 130 (284)
++...+......+..++|+.++++++..+|.+..+|..++.++...| ++++++.++++++..+|.+..+|...+.++..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-ELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34445556666777799999999999999999999999999999999 69999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhh
Q 023284 131 LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAM 210 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~ 210 (284)
.|+ +++++.+++++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..+|...+.++...+.+
T Consensus 104 ~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 175 (243)
T 2q7f_A 104 KEM--YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML------ 175 (243)
T ss_dssp TTC--HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC------
T ss_pred hcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH------
Confidence 999 999999999999999999999999999999999999999999999999999999999999999888875
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh--cccccccc
Q 023284 211 RDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE--YQKQLCFC 269 (284)
Q Consensus 211 ~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 269 (284)
++++.++.+++..+|++..+|..+..++...++ ...+...+.++++ ++....+.
T Consensus 176 -~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 176 -DEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN----REKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----TTHHHHHHHHHHHHCTTCHHHHH
T ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC----HHHHHHHHHHHHccCcchHHHHH
Confidence 778999999999999999999888888776543 5677777776643 34444443
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.1e-17 Score=151.06 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=144.0
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH-----------------
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL----------------- 104 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL----------------- 104 (284)
+...|++..++..++.++...+..++|+.++.+++.++|++..+|..++.++..+| ++++++
T Consensus 91 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 169 (368)
T 1fch_A 91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES-LQRQACEILRDWLRYTPAYAHLV 169 (368)
T ss_dssp HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTGGGC
T ss_pred HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCcHHHH
Confidence 34566777777777777777777777888888888888887777777777776665 244433
Q ss_pred --------------------------------HHHHHHHHhCCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284 105 --------------------------------AFVGRIAKSNSK--NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD 150 (284)
Q Consensus 105 --------------------------------~~~~~~l~~~pk--n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d 150 (284)
.++++++..+|. +..+|...+.++...|+ +++++.+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVDCFTAALSVR 247 (368)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Confidence 444444445555 56677777777777777 778888888888888
Q ss_pred cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--
Q 023284 151 AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN-- 228 (284)
Q Consensus 151 pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n-- 228 (284)
|.+..+|..++.++...|++++|+.+++++++++|.+..+|..++.++..+++ +++++.++.+++.++|++
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-------HREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCCC
Confidence 88878888888888778888888888888888888887788777777777776 478899999999999988
Q ss_pred ---------ccHHHHHHHHHccCCc
Q 023284 229 ---------ESPWRYLRGLYKDDTE 244 (284)
Q Consensus 229 ---------esaW~y~~~ll~~~~~ 244 (284)
..+|..++.++...++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTC
T ss_pred ccccccchhhHHHHHHHHHHHHhCC
Confidence 7789888888777654
No 32
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=3.5e-18 Score=134.82 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=112.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC
Q 023284 74 EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN 153 (284)
Q Consensus 74 ~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN 153 (284)
++..+||+...++..+|..+...| ++++++.++++++..+|.+..+|.++|.++..+|+ +++++..++++|+++|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKG-DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHHHHhhhhh
Confidence 456689999999999999999999 69999999999999999999999999999999999 999999999999999999
Q ss_pred hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 154 YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
..+|.++|.++..+|++++|+++++++|+++|+|..|+...+.++
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998877665
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=5.3e-17 Score=144.68 Aligned_cols=199 Identities=12% Similarity=0.071 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
.+++...+..+...+..++|+.++++++..+|.+..+|..++.++..+| ++++++.++++++..+|.+..+|...+.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4566777777777788899999999999999999999999999999999 699999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCc---CChhHHhHH------------HHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDA---KNYHAWSYR------------QWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dp---kN~~AW~~r------------~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
...|+ +++++..+.++++++| .+..+|... +.++...|++++|+++++++++.+|.+..+|..
T Consensus 82 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGK--LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHTC--HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCC--hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 99998 9999999999999999 899998877 577888899999999999999999999999999
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
++.++..++++ ++++..+.+++..+|++..+|..++.++...++ ...++..+.++++
T Consensus 160 ~~~~~~~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 160 RAECFIKEGEP-------RKAISDLKAASKLKSDNTEAFYKISTLYYQLGD----HELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHTTCH-------HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence 99999888874 778899999999999999999888777766543 4556665555543
No 34
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=3.5e-17 Score=147.69 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=164.3
Q ss_pred eecChhH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC
Q 023284 42 IAYKPEF----SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 42 I~~~p~~----~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn 117 (284)
+.+.|+. ..++...+.++...+..++|+.++++++.++|.+..+|..++.++...| ++++++.++++++..+|++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 53 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE-QELLAISALRRCLELKPDN 131 (368)
T ss_dssp CCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTC
T ss_pred HhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHhcCCCC
Confidence 3455554 3456677777777888899999999999999999999999999999999 6999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc----------------------------------------------
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA---------------------------------------------- 151 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp---------------------------------------------- 151 (284)
..+|...+.++...|+ +++++..+.++++++|
T Consensus 132 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 132 QTALMALAVSFTNESL--QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999999999999887 6666666665555554
Q ss_pred ---C--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 152 ---K--NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 152 ---k--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
. +..+|..++.++...|++++|+.+++++++.+|.+..+|+.++.++...+++ ++++.++.+++.++|
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-------EEAVAAYRRALELQP 282 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCT
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC
Confidence 4 5566677777777888888888888888888888888888888888777763 778888888888888
Q ss_pred CCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 227 ENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 227 ~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
++..+|..++.++...++ ..+++..+.++++
T Consensus 283 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~ 313 (368)
T 1fch_A 283 GYIRSRYNLGISCINLGA----HREAVEHFLEALN 313 (368)
T ss_dssp TCHHHHHHHHHHHHHHTC----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCC----HHHHHHHHHHHHH
Confidence 888888777777665543 4556665555543
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=4.5e-17 Score=145.15 Aligned_cols=185 Identities=10% Similarity=0.006 Sum_probs=172.6
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC---CCh
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS---KNY 118 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p---kn~ 118 (284)
+..+|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++...| ++++++..+++++..+| ++.
T Consensus 30 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 108 (359)
T 3ieg_A 30 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSEQEEK 108 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCcccChH
Confidence 45678888999999999998888999999999999999999999999999999999 69999999999999999 999
Q ss_pred HHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 119 QLWHHR------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 119 ~aW~hR------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
.+|... +.++...|+ +++++.+++++++.+|.+..+|..++.++..+|++++|++.++++++.+|.
T Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 186 (359)
T 3ieg_A 109 EAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999877 577788888 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284 187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLR 236 (284)
Q Consensus 187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~ 236 (284)
+..+|..++.++...+++ +++++.+.+++..+|++..+|.+..
T Consensus 187 ~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDH-------ELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp CHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999888874 7889999999999999999887653
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=5.7e-17 Score=150.46 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=181.8
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
.+.-+|+...++...+..+...+..++|+.++++++..+|++..+|+.++.++..+| ++++++.++++++..+|++..+
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHH
Confidence 456789999999999999888888899999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHH------------HHHHHHccCcHHHHHHHHHHHhccC
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYR------------QWVLQALGGWEDELDYCQMLLGEDI 185 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r------------~~vl~~l~~~~eeL~~~~~~l~~dp 185 (284)
|...+.++..+|+ +++++.+++++++++|.+. .+|... +.++...|++++|+.+++++++.+|
T Consensus 97 ~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 97 RLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999999 887665 5558889999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 186 FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 186 ~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
.+..++..++.++...+++ +++++.+.+++..+|++..+|+.+..++...++ ...++..+.+++.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEP-------RKAISDLKAASKLKNDNTEAFYKISTLYYQLGD----HELSLSEVRECLK 239 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCG-------GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHH
Confidence 9999999999999999885 567888999999999999999888877776543 4566666665543
No 37
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=2.5e-18 Score=139.32 Aligned_cols=145 Identities=5% Similarity=-0.058 Sum_probs=132.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~ 135 (284)
+.+..+.+..++|++.+.+++..+|++..+++..+.+...+| ++++|++++++++.++|++..+|..+|.++..+|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK-EYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-- 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence 444555555689999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH-HHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY-CQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~-~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
+++++.++.++++++|++..+|...+.++...++++++... ++++++++|+|..++..++.++...|.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 699999999999999999999877653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-17 Score=142.85 Aligned_cols=181 Identities=9% Similarity=0.013 Sum_probs=165.6
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHH-------
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN-------YTVWHFRRQIIETLHTDLQDELAFVGRIAK------- 112 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~-------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~------- 112 (284)
+...++..++.++...+..++|+..+.+++.++|++ ..+|..++.++..+| ++++++.++++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~ 114 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG-DLKKTIEYYQKSLTEHRTADI 114 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCchhHH
Confidence 446678888888888888899999999999999987 799999999999998 58899999998888
Q ss_pred -------------------hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHH
Q 023284 113 -------------------SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDE 173 (284)
Q Consensus 113 -------------------~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ee 173 (284)
.+|.+..+|..++.++...|+ +++++.+++++++.+|.+..+|..++.++...|++++|
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 788889999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC------CCCccHHHHHHH
Q 023284 174 LDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN------PENESPWRYLRG 237 (284)
Q Consensus 174 L~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~------P~nesaW~y~~~ 237 (284)
+.+++++++.+|.+..+|..++.++..++++ +++++++.++++++ |++..++..+..
T Consensus 193 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEY-------ASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 9999999999999999999999999999884 78899999999999 988888766544
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=5.2e-17 Score=145.84 Aligned_cols=205 Identities=7% Similarity=-0.051 Sum_probs=173.4
Q ss_pred eeecChhHHHHHHHHHHHHhc-------CCCC-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhhCHHHHHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYS-------DERS-------SRSFQLTKEAIC-LNPGNYTVWHFRRQIIETLHTDLQDELA 105 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~-------~~~s-------~~aL~~~~~~L~-lnP~~~~aW~~R~~~L~~l~~~~~~eL~ 105 (284)
.|..+|++.++|..++.++.. .+.. ++|+..++++|. ++|++..+|...+.++...| +++++..
T Consensus 42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~ 120 (308)
T 2ond_A 42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHS 120 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-CHHHHHH
Confidence 355789999999998887652 3444 899999999999 79999999999999999999 6999999
Q ss_pred HHHHHHHhCCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH-HccCcHHHHHHHHHHHhc
Q 023284 106 FVGRIAKSNSKNYQ-LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ-ALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 106 ~~~~~l~~~pkn~~-aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~-~l~~~~eeL~~~~~~l~~ 183 (284)
.+++++..+|+++. +|...+.++...|+ +++++..++++++.+|.+.++|...+.+.. ..|++++|+.+++++|+.
T Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 121 IYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999997 99999999999999 999999999999999999999987666543 379999999999999999
Q ss_pred cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc---CCC-CccHHHHHHHHHccCCccCCCChhhHHHHHhh
Q 023284 184 DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG---NPE-NESPWRYLRGLYKDDTESWINDPRMLLSVFES 259 (284)
Q Consensus 184 dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~---~P~-nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 259 (284)
+|.+..+|...+.++..+|+. +++...+++++.. .|+ +...|.....+....++ ...+...+..+
T Consensus 199 ~p~~~~~~~~~~~~~~~~g~~-------~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~----~~~a~~~~~~a 267 (308)
T 2ond_A 199 YGDIPEYVLAYIDYLSHLNED-------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD----LASILKVEKRR 267 (308)
T ss_dssp HTTCHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC----HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHH
Confidence 999999999999999888874 7788999999985 554 66788766655554432 34444444444
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=8.1e-17 Score=134.62 Aligned_cols=185 Identities=9% Similarity=0.055 Sum_probs=168.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhCHHHHHHHHHHHHH--hCCCCh
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAFVGRIAK--SNSKNY 118 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~--~~pkn~ 118 (284)
+...|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++... | ++++++.++++++. .+|.+.
T Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 113 (225)
T 2vq2_A 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN-RPAESMAYFDKALADPTYPTPY 113 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHTSTTCSCHH
T ss_pred HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCcCCcchH
Confidence 4567788889999999888888889999999999999999999999999999999 8 69999999999999 778889
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccC-CChHHHHHHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDI-FNNSAWNQRYFV 197 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp-~n~sAW~~r~~l 197 (284)
.+|...+.++...|+ +++++.++.++++.+|.+..+|...+.++...|++++|+..++++++.+| .+..++...+.+
T Consensus 114 ~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 114 IANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191 (225)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999999999999999 999998877777
Q ss_pred HhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284 198 VTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLR 236 (284)
Q Consensus 198 l~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~ 236 (284)
....+.. +++..++..++..+|+++.+..++.
T Consensus 192 ~~~~~~~-------~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 192 AKALGNA-------QAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHhcCcH-------HHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 7777763 6677788888889999998876653
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=2.7e-17 Score=145.24 Aligned_cols=205 Identities=10% Similarity=0.011 Sum_probs=147.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
..|+...++...+.++...+..++|+..+++++.++|.+..+|...+.++...| ++++++..+++++..+|++..++..
T Consensus 50 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-NANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTTTTC---
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHH
Confidence 455555555555555555555566666666666666666666666666666666 4666666666666666666666555
Q ss_pred H--------------HH-HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 124 R--------------RW-VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 124 R--------------~~-ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
. +. ++...|+ +++++.++.++++.+|.+..+|...+.++...|++++|+.++.++++.+|.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 206 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNE--YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206 (327)
T ss_dssp -----------------CCTTSHHH--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhHHHHHHHHHHHHHHhHHHHHccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 4 33 3333444 67788888888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
.+|..++.++...+++ ++++.++.+++..+|++..+|..+..++...++ ...++..+.++++-
T Consensus 207 ~~~~~l~~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 207 QLWNKLGATLANGNRP-------QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ----YDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHh
Confidence 9999999998888874 788999999999999999999888777766543 55666666666543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=4.5e-17 Score=141.12 Aligned_cols=197 Identities=5% Similarity=-0.062 Sum_probs=168.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----HHHHHHHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----QLWHHRRW 126 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----~aW~hR~~ 126 (284)
++..++.++...+..++|+..+++++..+|++..+|..++.++..+| ++++++.++++++. .|.+. .+|..+|.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA-KYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 44556667777788899999999999999999999999999999999 69999999999999 55443 45999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH-HHHhcCCCCc
Q 023284 127 VAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY-FVVTRSPLLG 205 (284)
Q Consensus 127 ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~-~ll~~l~~~~ 205 (284)
++..+|+ +++++.+++++++++|.+..+|..++.++...|++++|+++++++++.+|.+..+|..++ .+.... .
T Consensus 83 ~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~-- 157 (272)
T 3u4t_A 83 ILMKKGQ--DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E-- 157 (272)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C--
T ss_pred HHHHccc--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H--
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999 555443 3
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 206 GLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 206 ~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
++++++++.+++.++|++..+|..++.++...+. -.....++..+.+++
T Consensus 158 -----~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 158 -----YVKADSSFVKVLELKPNIYIGYLWRARANAAQDP-DTKQGLAKPYYEKLI 206 (272)
T ss_dssp -----HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST-TCSSCTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc-chhhHHHHHHHHHHH
Confidence 5889999999999999999999888777766543 111334444444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1e-16 Score=137.54 Aligned_cols=184 Identities=8% Similarity=0.035 Sum_probs=172.6
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH--hCCCChH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK--SNSKNYQ 119 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~--~~pkn~~ 119 (284)
+..+|+...++...+.++...+..++|++.+.+++..+|.+..+|...+.++...| +++++++++++++. .+|.+..
T Consensus 64 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 142 (252)
T 2ho1_A 64 LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK-RYEEAYQRLLEASQDTLYPERSR 142 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhCccCcccHH
Confidence 45678888999999998888888899999999999999999999999999999999 69999999999999 8999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
+|...+.++...|+ +++++.++.++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..++..++.++.
T Consensus 143 ~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 143 VFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284 200 RSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYL 235 (284)
Q Consensus 200 ~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~ 235 (284)
..+.. ++++.++.+++..+|++..++.++
T Consensus 221 ~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 221 VFEDR-------DTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HTTCH-------HHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HccCH-------HHHHHHHHHHHHHCCCCHHHHHHH
Confidence 88874 778999999999999998877654
No 44
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=2e-16 Score=152.15 Aligned_cols=205 Identities=10% Similarity=0.033 Sum_probs=181.9
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
...|+...++...+.++.+.+..++|++++++++.++|.+..+|+..+.++...| +++++++++++++..+|++..+|.
T Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-EHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHH
Confidence 4567778888888888888888899999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc------cCCC-hHHHHHHH
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE------DIFN-NSAWNQRY 195 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~------dp~n-~sAW~~r~ 195 (284)
..+.++.+.|+ +++++++++++++++|.+..+|+..+.++.+.|++++|+++++++++. +|.+ ..+|..++
T Consensus 446 ~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 446 FLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999999999999998 6665 68899999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 196 FVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
.++...|++ +++++.+++++..+|++..+|..+..++...++ ..++...+.++++
T Consensus 524 ~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 524 HAYRKLKMY-------DAAIDALNQGLLLSTNDANVHTAIALVYLHKKI----PGLAITHLHESLA 578 (597)
T ss_dssp HHHHHTTCH-------HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred HHHHHhcCH-------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----HHHHHHHHHHHHh
Confidence 999888874 789999999999999999999998888877654 4566666666644
No 45
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=1.4e-16 Score=153.34 Aligned_cols=189 Identities=12% Similarity=0.077 Sum_probs=176.3
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|++..+|.....++.+.+..++|++++++++..+|++..+|+..+.++...| +++++++++++++..+|++..+|
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHH
Confidence 34678888899999999888899999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCC-hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKN-YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN-~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
...+.++.+.|+ ++++++++++++++ +|.+ ..+|...+.++...|++++|++.++++++.+|.+..+|..+
T Consensus 479 ~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 479 NELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999 99999999999998 6766 68999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
+.++...|+. ++++++++++++++|++..+|..+..++.
T Consensus 557 ~~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 557 ALVYLHKKIP-------GLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCH-------HHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999884 78999999999999999999987776654
No 46
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.7e-17 Score=141.11 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHhhhCHHHHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHF----------------RRQIIETLHTDLQDELAFVGRIAK 112 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~----------------R~~~L~~l~~~~~~eL~~~~~~l~ 112 (284)
.+.+...+..+...+..++|+.++++++.++|++..+|+. ++.++..+| ++++++.++++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR-NYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 3445556666667778899999999999999999999999 999999999 69999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccC--cHHHHHHHHHHHhccCCChHH
Q 023284 113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGG--WEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~--~~eeL~~~~~~l~~dp~n~sA 190 (284)
++|++..+|..+|.++...|+ +++++.+++++++++|.|..+|+.+|.++...+. ...+...+.+++..+|. ..+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHH
T ss_pred HCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHH
Confidence 999999999999999999999 9999999999999999999999999999876654 35567777777755443 357
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
|+++|.+...+++ +++++.+++++|+++|+.+ +...+..
T Consensus 160 ~~~~g~~~~~~~~-------~~~A~~~~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 160 RYRDGLSKLFTTR-------YEKARNSLQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHT-------HHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred HHHHHHHHHHccC-------HHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 8888888777766 4889999999999999854 3334443
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.74 E-value=1.9e-16 Score=146.94 Aligned_cols=184 Identities=11% Similarity=0.009 Sum_probs=170.7
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY--- 118 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~--- 118 (284)
+..+|+...++..++.++...+..++|+..+.+++.++|++..+|..++.++..+| ++++++.++++++..+|.+.
T Consensus 53 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 131 (450)
T 2y4t_A 53 VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG-KLDEAEDDFKKVLKSNPSENEEK 131 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhH
Confidence 44678888899999999988899999999999999999999999999999999999 69999999999999999999
Q ss_pred HHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 119 QLWHHR------------RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 119 ~aW~hR------------~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
.+|... +.++...|+ +++++.+++++++.+|.+..+|..++.++...|++++|++.++++++.+|.
T Consensus 132 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 209 (450)
T 2y4t_A 132 EAQSQLIKSDEMQRLRSQALNAFGSGD--YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 887655 555778888 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284 187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYL 235 (284)
Q Consensus 187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~ 235 (284)
+..+|..++.++...+++ ++++..+.+++.++|++...|..+
T Consensus 210 ~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDH-------ELSLSEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp CHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCChHHHHHHH
Confidence 999999999999998874 789999999999999999988765
No 48
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=1.7e-17 Score=130.82 Aligned_cols=122 Identities=17% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 109 RIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 109 ~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
++..+||+...++..+|..+.+.|+ +++|+.+++++|+++|.+..+|+++|.++..+|++++|+++++++|+++|.+.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD--YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 4567899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
.+|..+|.++..++++ +++++++.++|+++|+|..++..++.++
T Consensus 82 ~a~~~lg~~~~~~~~~-------~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMREW-------SKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999984 8899999999999999999987776654
No 49
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.9e-17 Score=144.25 Aligned_cols=193 Identities=9% Similarity=0.053 Sum_probs=171.8
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHH--------------HH-HHHHhhhCHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFR--------------RQ-IIETLHTDLQDELAF 106 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R--------------~~-~L~~l~~~~~~eL~~ 106 (284)
+..+|+...++...+.++...+..++|+..+.+++..+|.+..++... +. ++...| ++++++.+
T Consensus 82 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~ 160 (327)
T 3cv0_A 82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-EYRECRTL 160 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHH-HHHHHHHH
T ss_pred HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-cHHHHHHH
Confidence 456788888888888888888888999999999999999999999887 55 455566 58999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
+++++..+|.+..+|...+.++...|+ +++++.++.++++.+|.+..+|..++.++...|++++|+.+++++++.+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC------------CccHHHHHHHHHccCCc
Q 023284 187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE------------NESPWRYLRGLYKDDTE 244 (284)
Q Consensus 187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~------------nesaW~y~~~ll~~~~~ 244 (284)
+..+|..++.++..++++ ++++.++.+++..+|+ +..+|..+..++...++
T Consensus 239 ~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQY-------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp CHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 999999999999998874 7899999999999999 67889888888776653
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=2.1e-16 Score=127.70 Aligned_cols=173 Identities=9% Similarity=-0.007 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
..++...+.++...+..++|+..+++++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG-AVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556666777777788899999999999999999999999999999999 699999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI 208 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~ 208 (284)
...|+ +++++..++++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++...+++
T Consensus 87 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---- 160 (186)
T 3as5_A 87 VQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH---- 160 (186)
T ss_dssp HHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred HHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH----
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999988874
Q ss_pred hhHHHHHHHHHHHHhcCCCCccH
Q 023284 209 AMRDSEVNFTIEAILGNPENESP 231 (284)
Q Consensus 209 ~~~~~el~~~~~~i~~~P~nesa 231 (284)
++++.++.+++..+|++...
T Consensus 161 ---~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 161 ---EEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ---HHHHHHHHHHHHHHHCCCGG
T ss_pred ---HHHHHHHHHHHHcCCCchhh
Confidence 78899999999999988653
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=1.5e-16 Score=150.62 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=127.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
.+|+ ..++...+.++...+..++|+..+.+++..+|++..+|..++.++...| ++++++..+++++..+|++..+|..
T Consensus 272 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 272 LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-DYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3444 4455555555555555566666666666666666666666666666665 3666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH------HHHHH
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN------QRYFV 197 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~------~r~~l 197 (284)
++.++...|+ +++++.+++++++.+|.+..+|..++.++...|++++|+.+++++++.+|.+..++. .++.+
T Consensus 350 la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 350 LACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 6666666665 666666666666666666666666666666666666666666666666655544332 22333
Q ss_pred HhcCCCCch---hhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 198 VTRSPLLGG---LIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 198 l~~l~~~~~---~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
+...+.... ...-+++++.++.+++..+|++..+|..++.++...++ ..+++..+.++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~ 490 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK----IDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHH
Confidence 333300000 00125788999999999999999999888888877653 4566666655544
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=7.9e-17 Score=137.24 Aligned_cols=156 Identities=4% Similarity=-0.084 Sum_probs=143.9
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.+.+..+|+.+|.++...| ++++++.++++++..+| .+..+|+.+|.++..+|+ +++++.+++++++.+|.+..+|
T Consensus 3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~ 79 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--YKEAADYFDIAIKKNYNLANAY 79 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCSHHHHH
T ss_pred cccCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--HHHHHHHHHHHHHhCcchHHHH
Confidence 3556799999999999999 69999999999999999 999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCCh-------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC--C
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNN-------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE--N 228 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~--n 228 (284)
..++.++..+|++++|+++++++++.+|.|. .+|..+|.+...++++ +++++++.++|+++|+ +
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~~~~ 152 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI-------EKAEENYKHATDVTSKKWK 152 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH-------HHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999 6799999999888874 8899999999999999 8
Q ss_pred ccHHHHHHHHHccCCc
Q 023284 229 ESPWRYLRGLYKDDTE 244 (284)
Q Consensus 229 esaW~y~~~ll~~~~~ 244 (284)
..+|..++.++...+.
T Consensus 153 ~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999888877665433
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.9e-16 Score=138.90 Aligned_cols=183 Identities=8% Similarity=-0.036 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhC------HHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHh
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET-------LHTD------LQDELAFVGRIAK-SNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~-------l~~~------~~~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~l 131 (284)
.+|+..++++|..+|.+..+|+.++.++.. .|.. .++++..+++++. ++|++..+|...+.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 689999999999999999999999998864 3532 3899999999999 7999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcCChh-HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh-cCCCCchhhh
Q 023284 132 GTGAVNKELQFTKKMLSLDAKNYH-AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT-RSPLLGGLIA 209 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpkN~~-AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~-~l~~~~~~~~ 209 (284)
|+ ++++...++++++++|.+.. +|...+.++...|++++|+..++++++.+|.+..+|...+.+.. ..++
T Consensus 113 ~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~------ 184 (308)
T 2ond_A 113 MK--YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD------ 184 (308)
T ss_dssp TC--HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC------
T ss_pred CC--HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC------
Confidence 99 99999999999999999997 99999999999999999999999999999999888876655532 2455
Q ss_pred hHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 210 MRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 210 ~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
+++++..++++|+.+|++..+|..+..++...+ +..++...+-+++.
T Consensus 185 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 -KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----EDNNTRVLFERVLT 231 (308)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----CHHHHHHHHHHHHh
Confidence 477899999999999999999987776665543 45677777777776
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=8.2e-16 Score=137.95 Aligned_cols=177 Identities=10% Similarity=0.049 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
+|+...++...+.++...++.++|++.+++ |.+..++..++.++..+| +++++++.+++++..+|.+.......
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~p~~~~~~l~~ 170 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLD-RLDLARKELKKMQDQDEDATLTQLAT 170 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCcCcHHHHHHH
Confidence 466666666666666666666677766665 666777777777777777 47777787888887777776444444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+|+-...+.+.+++++.+++++++.+|.+..+|+.++.++..+|++++|.+.++++|+.+|.|..+|++++.++..+|+.
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence 44333222222788888888888888888888888888888888888888888888888888888888888887777764
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284 205 GGLIAMRDSEVNFTIEAILGNPENESPWR 233 (284)
Q Consensus 205 ~~~~~~~~~el~~~~~~i~~~P~nesaW~ 233 (284)
. +.+.+++.+++.++|+|+.+-.
T Consensus 251 ~------eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 251 P------EVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp H------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred H------HHHHHHHHHHHHhCCCChHHHH
Confidence 1 2235677788888888876543
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.2e-16 Score=136.70 Aligned_cols=193 Identities=7% Similarity=-0.069 Sum_probs=111.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ 119 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~ 119 (284)
.+|+...++..++.++...+..++|+..+.+++. .|.+ ..+|..++.++..+| ++++++.++++++..+|.+..
T Consensus 32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~a~~~~~~~~~ 109 (272)
T 3u4t_A 32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG-QDSLAIQQYQAAVDRDTTRLD 109 (272)
T ss_dssp TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTH
T ss_pred hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcCcccHH
Confidence 4444555555555555555555666666666665 3322 233566666666655 366666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
+|...+.++...|+ +++++.+++++++++|.+..+|.+++..+...+++++|+++++++++.+|.+..++..++.+..
T Consensus 110 ~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 110 MYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 66666666666665 6666666666666666666666666633333335666666666666666666666666555554
Q ss_pred cCCC---Cchhh-----------------------------------hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 200 RSPL---LGGLI-----------------------------------AMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 200 ~l~~---~~~~~-----------------------------------~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
.++. ++.+. .-++++++++.+++.++|+|+.++-.++.+..
T Consensus 188 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 4433 11000 01477889999999999999988866555443
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.72 E-value=3.6e-16 Score=136.20 Aligned_cols=187 Identities=6% Similarity=-0.095 Sum_probs=161.6
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN- 117 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn- 117 (284)
..++|+...++...+..+...+..++|+..+++++..+|.+ ..+++.++.++..+| ++++++..+++++..+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK-EYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHCCCCc
Confidence 34677778888888888888888899999999999999999 999999999999999 6999999999999998855
Q ss_pred --hHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHccCc
Q 023284 118 --YQLWHHRRWVAEK--------LGTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALGGW 170 (284)
Q Consensus 118 --~~aW~hR~~ll~~--------l~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~~~ 170 (284)
..+++.++.++.. .|+ +++++..++++++.+|.+..++ ..+|.++...|++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTD--TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHH--HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 6789999999999 888 9999999999999999998888 8889999999999
Q ss_pred HHHHHHHHHHHhccCCC---hHHHHHHHHHHhcCCCCch---hhhhHHHHHHHHHHHHhcCCCCccH
Q 023284 171 EDELDYCQMLLGEDIFN---NSAWNQRYFVVTRSPLLGG---LIAMRDSEVNFTIEAILGNPENESP 231 (284)
Q Consensus 171 ~eeL~~~~~~l~~dp~n---~sAW~~r~~ll~~l~~~~~---~~~~~~~el~~~~~~i~~~P~nesa 231 (284)
++|+..++++++.+|.+ ..++..++.++..+|.... ...-+++++..+.+++..+|+++.+
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 99999999999999984 5689999988877642210 0112588999999999999999753
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.71 E-value=5.7e-17 Score=161.88 Aligned_cols=157 Identities=8% Similarity=-0.100 Sum_probs=147.0
Q ss_pred ecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 43 AYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 43 ~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
..+|++..++...+.++...+..++|++.++++++++|++..+|+.+|.++..+| ++++|+..+++++..+|.+..+|.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~~~~~~~ 505 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG-DYDSATKHFTEVLDTFPGELAPKL 505 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHH
Confidence 6779999999999988888888899999999999999999999999999999999 699999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
.++.++..+|+ +++ ++.++++++++|.+..+|++++.++..+|++++|+++++++++++|.+..||.+++.++...+
T Consensus 506 ~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 506 ALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 99999999999 999 999999999999999999999999999999999999999999999999999999999976544
Q ss_pred C
Q 023284 203 L 203 (284)
Q Consensus 203 ~ 203 (284)
.
T Consensus 583 ~ 583 (681)
T 2pzi_A 583 S 583 (681)
T ss_dssp -
T ss_pred C
Confidence 3
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.71 E-value=1.6e-17 Score=134.50 Aligned_cols=142 Identities=6% Similarity=-0.006 Sum_probs=127.7
Q ss_pred HHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284 92 IIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 92 ~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
+....| ++++++..+.+++..+|++..++++.+.++...|+ +++|+++++++++++|+|..+|+.+|.++..+|+++
T Consensus 6 ~~~~~~-~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKA-DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHH-HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcC-hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 333445 58999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHHHHHhcCCCCccHHHHHHHHHccCC
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN-FTIEAILGNPENESPWRYLRGLYKDDT 243 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~-~~~~~i~~~P~nesaW~y~~~ll~~~~ 243 (284)
+|+.++.++|+++|++..+|...+.++...++++ +++. +++++++++|+|+.+|..+..++...+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-------~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD-------GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS-------SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998888763 3444 468999999999999988777776554
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=2.2e-15 Score=130.14 Aligned_cols=148 Identities=8% Similarity=-0.016 Sum_probs=132.5
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
+|....++...+.++...+..++|+.++.+++.++|++..+|...+.++...| ++++++.++++++..+|.+..+|..+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-NFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCccccHHHHHH
Confidence 46788899999999998889999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+.++..+|+ +++++.+++++++++|.+..+....+.. ...|++++|+..+.+++..+|.+...|...+.
T Consensus 118 a~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 186 (275)
T 1xnf_A 118 GIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186 (275)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 999999999 9999999999999999998776666544 55588999999999999988888666654333
No 60
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.4e-15 Score=142.28 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-----
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICL---------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN----- 114 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l---------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~----- 114 (284)
..+++..+.+....+..++|++.+.+++.+ +|....+|++++.+...+| ++++++.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhccc
Confidence 456778888888889999999999999987 7788899999999999999 6999999999999863
Q ss_pred ---CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHH---HccCcHHHHHHHHHHHhccCCCh
Q 023284 115 ---SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQ---ALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 115 ---pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~---~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
+....++..+|+.+..+|...+++|+++++++++++|.|..++...+.+.. .++..+++++.+.++++++|.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 456788999999999887656999999999999999999999999988754 45677899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
.++...+..+..++...+. +++++.++.+++..+|++..+|..++.++...+. ...++..+.++++
T Consensus 210 ~~~~~l~~~~~~~~~~~~~---~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----~~~A~~~~~~al~ 275 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEE---EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE----PDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHCC---------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHH
Confidence 9999999887776543221 3567888889999999999998888777766543 4556666666544
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.3e-16 Score=148.07 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=152.1
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
.+|+ ..++...+.++...+..++|+..+++++..+|.+..+|..++.++...| ++++++..+++++..+|++..+|..
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ-NYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT-CTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhChhhHHHHHH
Confidence 4455 5555555666666666666777777777777777777777777666666 4777777778888778877777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH------HHHHHHHH
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS------AWNQRYFV 197 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s------AW~~r~~l 197 (284)
.+.++...|+ +++++.+++++++.+|.+..+|..++.++...|++++|+.+++++++.+|.+.. +|..++.+
T Consensus 344 l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 7777777777 888888888888888888888888888888888888888888888888888755 78888887
Q ss_pred Hhc---CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 198 VTR---SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 198 l~~---l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
+.. .+. +++++.++.+++..+|++..+|..+..++...++ ..++...+.++++
T Consensus 422 ~~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 422 LTRNPTVEN-------FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED----IDEAITLFEESAD 477 (514)
T ss_dssp HHTSCCTTH-------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHH
T ss_pred HhhhhhcCC-------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Confidence 777 665 4788999999999999999999888877776543 4455555555543
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=1.7e-16 Score=151.72 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDL-QDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~-~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
++++..++.++...|.+..+|+.+|.++...| ++ +++++++++++..+|++..+|...+.++...|+ +++|+.+++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTP-DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD--VTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS-SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 57888889999999999999999999999999 58 999999999999999999999999999999999 999999999
Q ss_pred HHHHhCcCChhHHhHHHHHHHHc---------cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC--------CCCchh
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQAL---------GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS--------PLLGGL 207 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~l---------~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l--------~~~~~~ 207 (284)
++++++|. ..+|...+.++..+ |++++|+++++++++++|.+..+|+.+|.++..+ ++
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~---- 236 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI---- 236 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH----
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch----
Confidence 99999999 79999999999999 9999999999999999999999999999998766 43
Q ss_pred hhhHHHHHHHHHHHHhcCC---CCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 208 IAMRDSEVNFTIEAILGNP---ENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 208 ~~~~~~el~~~~~~i~~~P---~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
++++++++.+++.++| ++..+|+.++.++...+ ++.+++..+.++++-
T Consensus 237 ---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 ---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE----SYGEALEGFSQAAAL 287 (474)
T ss_dssp ---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHh
Confidence 5889999999999999 99999998888887764 356777777777553
No 63
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=2.4e-15 Score=134.90 Aligned_cols=185 Identities=12% Similarity=-0.010 Sum_probs=162.9
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWH 122 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~ 122 (284)
+|....++......+...+..++|++.+++++.. +|++.+++..++.++...| +++++++.+++ |.+..++.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g-~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ-NPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT-CHHHHHHHHTT-----CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC-CHHHHHHHHhC-----CCCHHHHH
Confidence 4556677778888888888889999999999986 6999999999999999999 69999999988 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH--HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL--QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl--~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
.++.++..+|+ +++++..++++++.+|.+...-...+|+- ...|++++|+..++++++.+|.+..+|+.++.++..
T Consensus 135 ~l~~~~~~~g~--~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 135 MTVQILLKLDR--LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999865444444332 344789999999999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCc
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTE 244 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~ 244 (284)
+|++ +++++.+.++|.++|+|..+|+.++.++...++
T Consensus 213 ~g~~-------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 213 QGRW-------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp TTCH-------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cCCH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9984 889999999999999999999998888777654
No 64
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.9e-16 Score=146.55 Aligned_cols=187 Identities=9% Similarity=-0.044 Sum_probs=174.8
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+...|+...++...+.++...+..++|+..+++++.++|.+..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN-KFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp HTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHSTTCSHHH
T ss_pred hhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcccCHHHH
Confidence 45678888899999999988888999999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH---ccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA---LGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~---l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
...+.++...|+ +++++.++.++++++|.+.. +|..++.++.. .|++++|+.+++++++.+|.+..+|.
T Consensus 376 ~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 376 NFFAEILTDKND--FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 999999999999 99999999999999999966 99999999999 99999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGL 238 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~l 238 (284)
.++.++...|++ +++++++.+++.++|++..+|..+...
T Consensus 454 ~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 454 GLAQMKLQQEDI-------DEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHTTCH-------HHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCH-------HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999884 789999999999999999998766443
No 65
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.70 E-value=1.1e-15 Score=144.74 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH 97 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~ 97 (284)
|..+|+...++..++.++...+..++|+..+++++.++|++..+|..++.++..+|
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 44566666666666666666666666777777777777777666666666655543
No 66
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.69 E-value=1e-15 Score=148.59 Aligned_cols=162 Identities=10% Similarity=-0.042 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
+..++|+++++++++++|++..+|+.++.++...| +++++++.+++++..+|++..+|...+.++..+|+ +++++++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG-DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--HAEAAVL 79 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence 34578999999999999999999999999999988 69999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRS---PLLGGLIAMRDSEVNFTI 219 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l---~~~~~~~~~~~~el~~~~ 219 (284)
++++++++|.+..+|...+.++..+|++++|+++++++++.+|.+..++..++.++..+ ++ ++++++.+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-------~~~A~~~~~ 152 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-------LDVLSAQVR 152 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-------HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888 55 477889999
Q ss_pred HHHhcCCCCccHHHH
Q 023284 220 EAILGNPENESPWRY 234 (284)
Q Consensus 220 ~~i~~~P~nesaW~y 234 (284)
++++.+|++..++..
T Consensus 153 ~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 153 AAVAQGVGAVEPFAF 167 (568)
T ss_dssp HHHHHTCCCSCHHHH
T ss_pred HHHhcCCcccChHHH
Confidence 999999998877743
No 67
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=3.3e-16 Score=128.02 Aligned_cols=127 Identities=6% Similarity=-0.081 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
......++..++. +.+++.++|++..+|+.+|.++...| ++++++.++++++..+|++..+|..+|.++..+
T Consensus 12 ~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 12 STAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKG-RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp HHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3344445554443 45678889999999999999999999 599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 132 GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
|+ +++++.+++++++++|.|..+|+++|.++..+|++++|+.+++++++++|...
T Consensus 84 g~--~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 84 EQ--FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TC--HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cc--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99 99999999999999999999999999999999999999999999999999764
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=1.2e-14 Score=125.48 Aligned_cols=165 Identities=8% Similarity=-0.031 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284 64 RSSRSFQLTKEAICL----NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE 139 (284)
Q Consensus 64 ~s~~aL~~~~~~L~l----nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee 139 (284)
..++|+..+++++.. +|.+..+|..++.++...| ++++++.++++++..+|++..+|...+.++...|+ ++++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A 96 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--FDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC--HHHH
Confidence 347899999999987 4678899999999999999 69999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHH
Q 023284 140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTI 219 (284)
Q Consensus 140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~ 219 (284)
+.+++++++++|.+..+|..++.++..+|++++|+.+++++++.+|.+..+....+.... .++ +++++..+.
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~-------~~~A~~~~~ 168 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-KLD-------EKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHC-------HHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcC-------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876665554432 243 477888888
Q ss_pred HHHhcCCCCccHHHHHHHHH
Q 023284 220 EAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 220 ~~i~~~P~nesaW~y~~~ll 239 (284)
+++...|.+...|......+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 169 QHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp HHHHHSCCCSTHHHHHHHHT
T ss_pred HHHhcCCcchHHHHHHHHHH
Confidence 89988888887776444433
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.65 E-value=1.7e-16 Score=129.75 Aligned_cols=116 Identities=9% Similarity=-0.087 Sum_probs=110.9
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
..+.+++.++|++..+|+.+|.++...|+ +++++.+++++++++|.|..+|+.+|.++..+|++++|+++++++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGR--IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 45678899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284 185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne 229 (284)
|.|..+|+++|.++..+|++ ++++.++++++.+.|+.+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~-------~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAP-------LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCCHH
Confidence 99999999999999999984 889999999999999865
No 70
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.8e-14 Score=134.84 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=159.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhhh-CHHHHHHHHHHHHHhCC
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLN--------PGNYTVWHFRRQIIETLHT-DLQDELAFVGRIAKSNS 115 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~ln--------P~~~~aW~~R~~~L~~l~~-~~~~eL~~~~~~l~~~p 115 (284)
.|....+++.++.++...+..++|+.++++++.++ +....++..+|+++..++. .+++|+.+|++++.++|
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 34445566677777777888899999999999874 4567899999999888763 58999999999999999
Q ss_pred CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc----CcHHHHHHHHHHHhccCCCh
Q 023284 116 KNYQLWHHRRWVAEKL---GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG----GWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 116 kn~~aW~hR~~ll~~l---~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~----~~~eeL~~~~~~l~~dp~n~ 188 (284)
++..++...+.+...+ ++ .+++++.+.++++++|.+..++...+..+..++ .+++++.++++++..+|.+.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~--~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~ 247 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPP--SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCC--CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH
T ss_pred CCHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH
Confidence 9999999998886544 55 678999999999999999999999998887664 57899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
.++.++|.++...+.+ +++++++.++++.+|++..+++.++.++
T Consensus 248 ~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEP-------DKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCch-------HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999999884 7899999999999999999987776554
No 71
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=2.8e-14 Score=137.15 Aligned_cols=224 Identities=7% Similarity=-0.032 Sum_probs=180.9
Q ss_pred eecChhHHHHHHHHHHHHhc-------CCCCH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhhCHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYS-------DERSS-------RSFQLTKEAIC-LNPGNYTVWHFRRQIIETLHTDLQDELAF 106 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~-------~~~s~-------~aL~~~~~~L~-lnP~~~~aW~~R~~~L~~l~~~~~~eL~~ 106 (284)
|..+|.+.++|..++.++.. .+..+ +|+.++++++. ++|++..+|...+.++...| +++++...
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g-~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM-KYEKVHSI 343 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 45688999999998888764 45555 89999999997 89999999999999999999 69999999
Q ss_pred HHHHHHhCCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-HHHccCcHHHHHHHHHHHhcc
Q 023284 107 VGRIAKSNSKNY-QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 107 ~~~~l~~~pkn~-~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l~~l~~~~eeL~~~~~~l~~d 184 (284)
+++++..+|+++ .+|...+.++.+.|+ ++++++.++++++..|.+++.|...+++ +...|+.++|...++++|+.+
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 999999999996 699999999999988 9999999999999999999988877766 346899999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc----HHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES----PWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes----aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
|++..+|...+.++.++|.. +++...+++++...|.++. .|..........|+ ...+......++
T Consensus 422 p~~~~~~~~~~~~~~~~g~~-------~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~----~~~~~~~~~r~~ 490 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNED-------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD----LASILKVEKRRF 490 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCH-------HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCH-------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 99999999999998888874 6788899999998887665 88554444444332 233333222221
Q ss_pred h--c-----cccccccccCCCCcCCc
Q 023284 261 E--Y-----QKQLCFCSEHTFRSYLP 279 (284)
Q Consensus 261 ~--~-----~~~~~~~~~~~~~~~~~ 279 (284)
+ | .....|-++..|..+.|
T Consensus 491 ~~~p~~~~~~~~~~~~~r~~~~~~~~ 516 (530)
T 2ooe_A 491 TAFREEYEGKETALLVDRYKFMDLYP 516 (530)
T ss_dssp HHTHHHHTTCHHHHHGGGTCBTTBCS
T ss_pred HHCchhccCchHHHHHHHHHhcccCC
Confidence 1 1 12246777777777776
No 72
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=7.2e-15 Score=118.71 Aligned_cols=122 Identities=4% Similarity=-0.170 Sum_probs=114.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284 71 LTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD 150 (284)
Q Consensus 71 ~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d 150 (284)
.+.+++.++|++..+++.++.++...| ++++++.++++++..+|.+..+|..+|.++..+|+ +++++.+++++++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSG-XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcC
Confidence 467889999999999999999999999 69999999999999999999999999999999999 999999999999999
Q ss_pred cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 151 AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 151 pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
|.+..+|+++|.++..+|++++|+++++++++++|.+......+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 999999999999999999999999999999999999876654443
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=3.5e-15 Score=126.63 Aligned_cols=146 Identities=13% Similarity=0.008 Sum_probs=126.4
Q ss_pred eeecChhHHHHHHH----------------HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH
Q 023284 41 PIAYKPEFSETMSY----------------FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL 104 (284)
Q Consensus 41 ~I~~~p~~~~a~~~----------------~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL 104 (284)
.|..+|++..++.. ++.++...+..++|+..++++|+++|++..+|..+|.++..+| ++++++
T Consensus 30 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~ 108 (208)
T 3urz_A 30 TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG-QEKDAL 108 (208)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHH
Confidence 46678999999988 8999999999999999999999999999999999999999999 699999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
.++++++.++|++..+|+.+|.++...|......+...+.+++..+|.. .+|+++|.+...+|++++|+++++++|+++
T Consensus 109 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987665422455667788877655543 478999999999999999999999999999
Q ss_pred CCCh
Q 023284 185 IFNN 188 (284)
Q Consensus 185 p~n~ 188 (284)
|++.
T Consensus 188 P~~~ 191 (208)
T 3urz_A 188 PSTE 191 (208)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 9753
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=5.1e-14 Score=120.57 Aligned_cols=171 Identities=9% Similarity=-0.078 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH---HHHH
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY---TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ---LWHH 123 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~---~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~---aW~h 123 (284)
.++...+..+...+..++|+..+++++..+|.+. .+++.++.++...| ++++++..+++++..+|++.. +++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3444555566666777999999999999999874 79999999999999 699999999999999999985 8999
Q ss_pred HHHHHHHh------------------CCCCHHHHHHHHHHHHHhCcCChhHH-----------------hHHHHHHHHcc
Q 023284 124 RRWVAEKL------------------GTGAVNKELQFTKKMLSLDAKNYHAW-----------------SYRQWVLQALG 168 (284)
Q Consensus 124 R~~ll~~l------------------~~~~~~eel~~~~~aL~~dpkN~~AW-----------------~~r~~vl~~l~ 168 (284)
+|.++..+ |+ +++++..++++++.+|.+..++ ..++.++...|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQ--ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHC--------------CCHH--HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHH--HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99988763 34 8999999999999999999887 46677888899
Q ss_pred CcHHHHHHHHHHHhccCCCh---HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 169 GWEDELDYCQMLLGEDIFNN---SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 169 ~~~eeL~~~~~~l~~dp~n~---sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
++++|+..++++|+.+|++. .++..++.++.++|+. +++++.+..++...|++..
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~-------~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN-------AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHhhCCCchh
Confidence 99999999999999999986 6799999999999984 7789999999999998754
No 75
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=2.5e-15 Score=123.87 Aligned_cols=162 Identities=6% Similarity=-0.040 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE- 129 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~- 129 (284)
.....+..+...+..++|+..+++++.++|++..+|..++.++...| ++++++..+++++..+| +...+...+.+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK-QFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT-CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 34445555666677799999999999999999999999999999999 69999999999999999 8777666554422
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--hHHHHHHHHHHhcCCCCchh
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--NSAWNQRYFVVTRSPLLGGL 207 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~sAW~~r~~ll~~l~~~~~~ 207 (284)
..+. ..+++..++++++++|.|..+|...+.++...|++++|+..+.++++.+|.+ ..+|...+.++..+|+.
T Consensus 86 ~~~~--~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~--- 160 (176)
T 2r5s_A 86 QQAA--ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG--- 160 (176)
T ss_dssp HHHT--SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS---
T ss_pred hhcc--cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC---
Confidence 2222 2357999999999999999999999999999999999999999999999986 55999999999999886
Q ss_pred hhhHHHHHHHHHHHHh
Q 023284 208 IAMRDSEVNFTIEAIL 223 (284)
Q Consensus 208 ~~~~~~el~~~~~~i~ 223 (284)
++++..+.++|.
T Consensus 161 ----~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 ----NAIASKYRRQLY 172 (176)
T ss_dssp ----CHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHH
Confidence 445666666653
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.61 E-value=3.8e-16 Score=142.90 Aligned_cols=161 Identities=14% Similarity=0.001 Sum_probs=143.2
Q ss_pred cceeecChhHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHH
Q 023284 39 VVPIAYKPEFSETMSYFRAVYY------------SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAF 106 (284)
Q Consensus 39 ~~~I~~~p~~~~a~~~~r~~~~------------~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~ 106 (284)
.+.|.++|++ +++.++.... .....++|++.+..++..+|++..+|+.+|.++...| ++++|+.+
T Consensus 93 ~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g-~~~~A~~~ 169 (336)
T 1p5q_A 93 HSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEG-KYKQALLQ 169 (336)
T ss_dssp EEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred eEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
Confidence 3477888887 5555443221 2223357888889999999999999999999999999 69999999
Q ss_pred HHHHHHhCCCC---------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcH
Q 023284 107 VGRIAKSNSKN---------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWE 171 (284)
Q Consensus 107 ~~~~l~~~pkn---------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ 171 (284)
+++++..+|.+ ..+|..++.++..+|+ +++++.+++++|+++|.|..+|+.++.++..+|+++
T Consensus 170 y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 247 (336)
T 1p5q_A 170 YKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247 (336)
T ss_dssp HHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999 6999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 172 DELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 172 eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+|+.+++++++++|.|..++..++.++..++++
T Consensus 248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888765
No 77
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=5.9e-15 Score=117.48 Aligned_cols=125 Identities=7% Similarity=-0.158 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 70 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 70 ~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
..+.+++.++|++..+++.++.++...| ++++++..+++++..+|.+..+|...+.++..+|+ +++++.++++++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhc
Confidence 4567788999999999999999999999 69999999999999999999999999999999999 99999999999999
Q ss_pred CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 150 DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 150 dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
+|.|..+|++++.++..+|++++|+.+++++++++|.+...+..+..+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999988776555444
No 78
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.60 E-value=1.5e-14 Score=129.15 Aligned_cols=168 Identities=11% Similarity=0.008 Sum_probs=149.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
.|+..+++...+..+...+..++|+..+++++.++|++..++...+.++...| ++++++..+++++..+|.+...+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g-~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN-RSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT-CHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC-CHHHHHHHHHhCchhhcchHHHHHHH
Confidence 36667777777777777888899999999999999999999999999999999 59999999999999999877777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--hHHHHHHHHHHhcCC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--NSAWNQRYFVVTRSP 202 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~sAW~~r~~ll~~l~ 202 (284)
+..+...+. ..+++..+.++++.+|.|..+++..+.++...|++++|++.+.++++.+|++ ..++...+.++..+|
T Consensus 192 ~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 777777777 7789999999999999999999999999999999999999999999999999 889999999999998
Q ss_pred CCchhhhhHHHHHHHHHHHH
Q 023284 203 LLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 203 ~~~~~~~~~~~el~~~~~~i 222 (284)
+.+ +++..+.++|
T Consensus 270 ~~~-------~a~~~~r~al 282 (287)
T 3qou_A 270 TGD-------ALASXYRRQL 282 (287)
T ss_dssp TTC-------HHHHHHHHHH
T ss_pred CCC-------cHHHHHHHHH
Confidence 864 4555566555
No 79
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.3e-14 Score=110.07 Aligned_cols=118 Identities=11% Similarity=0.028 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
|....+|..+|..+...| ++++++.++++++..+|.+..+|..++.++..+|+ +++++..++++++++|.+..+|..
T Consensus 1 p~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKS-DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 566788999999999988 69999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhcc------CCChHHHHHHHHHHhc
Q 023284 160 RQWVLQALGGWEDELDYCQMLLGED------IFNNSAWNQRYFVVTR 200 (284)
Q Consensus 160 r~~vl~~l~~~~eeL~~~~~~l~~d------p~n~sAW~~r~~ll~~ 200 (284)
+|.++..+|++++|++++.++++++ |.|..++.....+..+
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 8888888877766544
No 80
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=1e-14 Score=120.23 Aligned_cols=109 Identities=11% Similarity=0.016 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK-------NYQ-----LWHHRRWVAEKLGTGAVNKELQFTKKMLSL 149 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk-------n~~-----aW~hR~~ll~~l~~~~~~eel~~~~~aL~~ 149 (284)
....|..+|..+..+| ++++++.+|+++|.++|. +.. +|++|+.++..+|+ +++++.+++++|++
T Consensus 10 ~a~~~~~~G~~l~~~g-~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAG-EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--FDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh
Confidence 3566788888888888 599999999999999999 444 99999999999999 99999999999999
Q ss_pred -------CcCChhHH----hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 150 -------DAKNYHAW----SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 150 -------dpkN~~AW----~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
+|.+..+| ++||.++..+|++++|+++|+++|+++|.+.....-
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999998765443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=1.1e-13 Score=111.49 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=136.8
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+...|+...++...+.++...+..++|+.++.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 113 (186)
T 3as5_A 35 YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ-KYDLAVPLLIKVAEANPINFNVR 113 (186)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCcHhHHHH
Confidence 34566677888888888888888899999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
...+.++...|+ +++++.++.++++.+|.+..+|...+.++...|++++|+.+++++++.+|.+..+
T Consensus 114 ~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 114 FRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999 9999999999999999999999999999999999999999999999999988654
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.58 E-value=6.4e-14 Score=124.92 Aligned_cols=177 Identities=7% Similarity=-0.044 Sum_probs=145.9
Q ss_pred hh-HHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC
Q 023284 46 PE-FSETMSYF---RAVYYSDERSSRSFQLTKEAICLNPG------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS 115 (284)
Q Consensus 46 p~-~~~a~~~~---r~~~~~~~~s~~aL~~~~~~L~lnP~------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p 115 (284)
|+ +..|...+ +.++...+..++|+.++.+++.+.++ ...+|+..|.++..+| ++++++.++++++.+.|
T Consensus 30 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 65 66665554 34566678889999999999998543 2689999999999999 69999999999999988
Q ss_pred CC------hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284 116 KN------YQLWHHRRWVAEKL-GTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLG 182 (284)
Q Consensus 116 kn------~~aW~hR~~ll~~l-~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~ 182 (284)
+. ..++...+.++... |+ +++++.++++++++.|.+ ..++...|.++..+|++++|+++++++++
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65 56899999999995 99 999999999999999876 46789999999999999999999999999
Q ss_pred ccCCChH-------HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 183 EDIFNNS-------AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 183 ~dp~n~s-------AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
++|.+.. ++..+|.++..++++ ++++.++++++.++|+...+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDA-------VAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCH-------HHHHHHHHGGGCC--------
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCCCCcH
Confidence 9998764 577888888888874 789999999999999987654
No 83
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=1.8e-14 Score=116.35 Aligned_cols=121 Identities=9% Similarity=-0.082 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 105 AFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 105 ~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
..+++++..+|++..+|+.++.++...|+ +++++.++.++++++|.|..+|+.+|.++..+|++++|++++++++.++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGX--YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 35688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 185 IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 185 p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
|.+..+|+++|.++..+|++ +++++++.+++.++|+++.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGEL-------AEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCchHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHCcCCCcchHH
Confidence 99999999999999999984 78999999999999998876433
No 84
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=9e-13 Score=114.96 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
|.+..++...+.++...+..++|+.++.+++. |.+..+++..+.++.. .+ ++++++.++++++..+ +..++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC--CHHHH
Confidence 44455555555555555555666666666665 5555666666666655 55 4666666666666554 55666
Q ss_pred HHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 122 HHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 122 ~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
+..+.++.. .++ +++++.++.++++.+ +..+++..+.++.. .+++++|+++++++++.+ +..++.+
T Consensus 78 ~~lg~~~~~g~~~~~~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQN--TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHhCCCCcccC--HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 666666665 555 666666666666553 55666666666665 566666666666666554 4555555
Q ss_pred HHHHHhc
Q 023284 194 RYFVVTR 200 (284)
Q Consensus 194 r~~ll~~ 200 (284)
.+.++..
T Consensus 152 lg~~~~~ 158 (273)
T 1ouv_A 152 LGSLYDA 158 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555544
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.57 E-value=6.7e-14 Score=121.71 Aligned_cols=177 Identities=6% Similarity=-0.108 Sum_probs=148.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284 75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp 151 (284)
...++|.+..+++.++..+...| ++++++..+++++..+|.+ ..+|+.+|.++...|+ +++++..++++++++|
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQG-KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--YLLAASEYERFIQIYQ 83 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTT-CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHCC
Confidence 34678999999999999999999 6999999999999999999 9999999999999999 9999999999999988
Q ss_pred CC---hhHHhHHHHHHHH--------ccCcHHHHHHHHHHHhccCCChHHH-----------------HHHHHHHhcCCC
Q 023284 152 KN---YHAWSYRQWVLQA--------LGGWEDELDYCQMLLGEDIFNNSAW-----------------NQRYFVVTRSPL 203 (284)
Q Consensus 152 kN---~~AW~~r~~vl~~--------l~~~~eeL~~~~~~l~~dp~n~sAW-----------------~~r~~ll~~l~~ 203 (284)
.+ ..+++.+|.++.. .|++++|+..++++++.+|.+..++ ..+|.++...++
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 55 5789999999999 9999999999999999999998877 777888888887
Q ss_pred CchhhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCcc------CCCChhhHHHHHhhhh
Q 023284 204 LGGLIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTES------WINDPRMLLSVFESFE 261 (284)
Q Consensus 204 ~~~~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~------~~~~~~~~~~~~~~~~ 261 (284)
+ ++++..+.+++..+|++. .++..++.++...+.. .++..+++..+.+.++
T Consensus 164 ~-------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 164 Y-------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp H-------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 4 889999999999999965 3777776666544221 1334556666655544
No 86
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.57 E-value=1.1e-14 Score=120.16 Aligned_cols=106 Identities=8% Similarity=-0.006 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-------Chh-----HHhHHHHHHHHccCcHHHHHHHHHHHhc--
Q 023284 118 YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK-------NYH-----AWSYRQWVLQALGGWEDELDYCQMLLGE-- 183 (284)
Q Consensus 118 ~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk-------N~~-----AW~~r~~vl~~l~~~~eeL~~~~~~l~~-- 183 (284)
...|..+|..+..+|+ +++++.+|+++|+++|. +.. +|++++.++..+|++++|+.+++++|++
T Consensus 11 a~~~~~~G~~l~~~g~--~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGE--YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3467889999999999 99999999999999999 444 9999999999999999999999999999
Q ss_pred -----cCCChHHH----HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 184 -----DIFNNSAW----NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 184 -----dp~n~sAW----~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
+|++..|| ++||.++..++++ ++++++++++|+++|++....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-------eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRG-------AEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHCCSCC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCH-------HHHHHHHHHHHhcCCCcHHHH
Confidence 99999999 9999999999995 889999999999999998754
No 87
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.57 E-value=7.1e-14 Score=113.42 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=110.2
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.++.+..+|+.++.++...| ++++++.++++++..+|.+..+|..++.++..+|+ +++++.+++++++++|.+..+|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARK-EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--HEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHH
Confidence 35677889999999999999 69999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
+.++.++..+|++++|+.++.++++++|.|..+|..++...
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999998887653
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=9.6e-14 Score=134.62 Aligned_cols=152 Identities=6% Similarity=-0.044 Sum_probs=139.8
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
.+..+|++..++...+.++...+..++|++.+++++.++|++..+|..++.++..+| +++++++++++++..+|++..+
T Consensus 15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 93 (568)
T 2vsy_A 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ-RHAEAAVLLQQASDAAPEHPGI 93 (568)
T ss_dssp ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHH
Confidence 366789999999999999998888899999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc---cCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL---GGWEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l---~~~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
|...+.++..+|+ +++++++++++++++|.+..++...+.++..+ |++++|++.++++++.+|.+.+++...+
T Consensus 94 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 94 ALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999 99999999999999999999999999999999 9999999999999999999988875443
No 89
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=1.5e-15 Score=144.63 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=138.7
Q ss_pred CcceeecChhHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHH
Q 023284 38 PVVPIAYKPEFSETMSYFRAVYY------------SDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELA 105 (284)
Q Consensus 38 ~~~~I~~~p~~~~a~~~~r~~~~------------~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~ 105 (284)
..+.|.++|++ +++.++.... .....++|++.++.++..+|++..+|+.+|.++...+ ++++|+.
T Consensus 213 e~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g-~~~~A~~ 289 (457)
T 1kt0_A 213 EQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGG-KYMQAVI 289 (457)
T ss_dssp CEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34578889986 4444332111 1223357888889999999999999999999999999 6999999
Q ss_pred HHHHHHHhCCCC---------------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 106 FVGRIAKSNSKN---------------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 106 ~~~~~l~~~pkn---------------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
+|++++..+|.+ ..+|++++.++.++|+ +++|+.+|+++|+++|.|..+|++++.++..++++
T Consensus 290 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH
Confidence 999999999999 6999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 171 EDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 171 ~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
++|+.+++++++++|.|..++..++.++..++++
T Consensus 368 ~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877654
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.54 E-value=4.1e-13 Score=119.72 Aligned_cols=160 Identities=8% Similarity=-0.059 Sum_probs=147.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 75 AICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 75 ~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
+...-|++..++...+..+...| ++++++..+++++..+|++..++...+.++...|+ +++++..+++++..+|.+.
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQES-NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--SEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--HHHHHHHHTTSCGGGCSHH
T ss_pred HHHHcCCchhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--HHHHHHHHHhCchhhcchH
Confidence 33445999999999999999999 69999999999999999999999999999999999 9999999999999999888
Q ss_pred hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--ccHH
Q 023284 155 HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN--ESPW 232 (284)
Q Consensus 155 ~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n--esaW 232 (284)
..+...+..+...+..++|++.+.++++.+|+|..++..++.++...+++ +++++.+.++++.+|++ ..+|
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-------~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-------EEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhcccccccchHH
Confidence 77788888888889999999999999999999999999999999999984 88999999999999999 7799
Q ss_pred HHHHHHHccCCc
Q 023284 233 RYLRGLYKDDTE 244 (284)
Q Consensus 233 ~y~~~ll~~~~~ 244 (284)
..+..++...++
T Consensus 259 ~~l~~~~~~~g~ 270 (287)
T 3qou_A 259 XTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHcCC
Confidence 988888887653
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.53 E-value=8.1e-14 Score=114.68 Aligned_cols=167 Identities=5% Similarity=-0.125 Sum_probs=136.6
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHh
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWS 158 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~ 158 (284)
||.....+..++..+...| ++++++..+++++..+|++..+|...+.++...|+ +++++..++++++.+| +...+.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQG-EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--FELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp ----CTTHHHHHHHHHHTT-CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--HHHHHHHHTTCCGGGC-CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHhhhccC-ChHHHH
Confidence 5666677888899999988 69999999999999999999999999999999999 9999999999999999 776665
Q ss_pred HHHHHH-HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC--ccHHHHH
Q 023284 159 YRQWVL-QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN--ESPWRYL 235 (284)
Q Consensus 159 ~r~~vl-~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n--esaW~y~ 235 (284)
..+.+. ...+...+++..++++++.+|++..++..++.++...|++ ++++..+.++++.+|+. ..+|..+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD-------EEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHhCcccChHHHHHHH
Confidence 555442 2223445689999999999999999999999999999984 88999999999999986 4488888
Q ss_pred HHHHccCCccCCCChhhHHHHHhhh
Q 023284 236 RGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 236 ~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
+.++...++ ..+++.++-++|
T Consensus 151 ~~~~~~~g~----~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQ----GNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCS----SCHHHHHHHHHH
T ss_pred HHHHHHhCC----CCcHHHHHHHHH
Confidence 877776643 345555555544
No 92
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=3.9e-12 Score=110.85 Aligned_cols=197 Identities=8% Similarity=-0.008 Sum_probs=168.6
Q ss_pred hhHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCC
Q 023284 46 PEFSETMSYFRAVYYS----DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~----~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn 117 (284)
|+...++...+.++.. .+..++|+.++.+++.++ +..+++..+.++.. .+ ++++++.++++++..+ +
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~--~ 109 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLK--Y 109 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT--C
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcC--C
Confidence 5667788888888887 777799999999999986 89999999999998 77 6999999999999884 8
Q ss_pred hHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChH
Q 023284 118 YQLWHHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 118 ~~aW~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
..++...+.++.. .++ +++++.++.++++.+ +..++.+.+.++.. .+++++|+.+++++++. .+..
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 183 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRD--FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP 183 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred ccHHHHHHHHHHcCCCcccC--HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 9999999999999 888 999999999999987 78899999999998 89999999999999987 4678
Q ss_pred HHHHHHHHHhc----CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 190 AWNQRYFVVTR----SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 190 AW~~r~~ll~~----l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
++...+.++.. .+. ++++++++.++++..| ..++..+..++........+...++..+.++++-
T Consensus 184 a~~~lg~~~~~g~~~~~~-------~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKN-------FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTCSSCCC-------HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcc-------HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999887 555 4789999999999876 6677777777776433345667788888777654
No 93
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=120.84 Aligned_cols=169 Identities=14% Similarity=0.085 Sum_probs=151.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--- 113 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--- 113 (284)
+|+...++...+.++...+..++|+.++.+++.+ +|....++...+.++...| ++++++.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 4678889999999998888889999999999995 7888999999999999999 699999999999987
Q ss_pred -----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------cCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 114 -----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD--------AKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 114 -----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d--------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
+|....++...+.++...|+ +++++.++.+++++. |....++...+.++...|++++|+++++++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGK--YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57778899999999999999 999999999999884 778899999999999999999999999999
Q ss_pred Hhc--------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284 181 LGE--------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL 223 (284)
Q Consensus 181 l~~--------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~ 223 (284)
++. +|....++...+.++...+++ ++++.++.+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~ 223 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF-------KQAETLYKEILT 223 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Confidence 998 788888999999999888885 566666666665
No 94
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=4.8e-13 Score=128.46 Aligned_cols=182 Identities=8% Similarity=-0.016 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhCHH-------HHHHHHHHHHH-hCCCChHHHHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET-------LHTDLQ-------DELAFVGRIAK-SNSKNYQLWHHRRWVAEK 130 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~-------l~~~~~-------~eL~~~~~~l~-~~pkn~~aW~hR~~ll~~ 130 (284)
.+++.+++++|..+|.+..+|...+.++.. .| +++ +++..+++++. .+|++..+|...+.++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG-DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc-chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 488999999999999999999999999886 56 455 89999999997 899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCcCCh-hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH-hcCCCCchhh
Q 023284 131 LGTGAVNKELQFTKKMLSLDAKNY-HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV-TRSPLLGGLI 208 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~dpkN~-~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll-~~l~~~~~~~ 208 (284)
.|+ ++++...++++++++|.+. .+|...+.++.+.|++++|++.+.++++..|.+...+...+.+. ...++
T Consensus 334 ~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~----- 406 (530)
T 2ooe_A 334 RMK--YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD----- 406 (530)
T ss_dssp TTC--HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-----
T ss_pred cCC--HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-----
Confidence 999 9999999999999999996 69999999999999999999999999999998877776555542 24555
Q ss_pred hhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 209 AMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 209 ~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
.+++...++++|+.+|++..+|.....++...+ +..++...+-+++.
T Consensus 407 --~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g----~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 407 --KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----EDNNTRVLFERVLT 453 (530)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT----CHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC----CHhhHHHHHHHHHh
Confidence 377899999999999999999987776665543 34566666666665
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.52 E-value=1.6e-13 Score=112.18 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHhCCCCH--HHH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWV-AEKLGTGAV--NKE 139 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~l-l~~l~~~~~--~ee 139 (284)
+..++|+..+.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.+ +...|+ + +++
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~--~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN-DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ--HMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--CCCHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--cchHHH
Confidence 34468999999999999999999999999999999 69999999999999999999999999999 678888 7 999
Q ss_pred HHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 140 LQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
+.+++++++++|.+..+|...+.++...|++++|+.++.++++.+|.+.....
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999976553
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=1.2e-12 Score=99.45 Aligned_cols=135 Identities=16% Similarity=0.303 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE 129 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~ 129 (284)
.++...+.++...+..++|+..+.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 345556666666677799999999999999999999999999999888 6999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
..|+ +++++..++++++.+|.+..+|...+.++...|++++|+.++.+++..+|.+
T Consensus 81 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9998 9999999999999999999999999999999999999999999999999864
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=2e-12 Score=98.20 Aligned_cols=135 Identities=16% Similarity=0.274 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
.+|+..+.++...| ++++++..+++++..+|.+..+|...+.++...|+ +++++..++++++.+|.+..+|...+.+
T Consensus 2 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcC-cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 57888899998888 69999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284 164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
+...|++++|+..+++++..+|.+..+|...+.++...+++ ++++.++.+++..+|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-------DEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-------HHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH-------HHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999888874 77899999999999874
No 98
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.50 E-value=5.9e-13 Score=105.79 Aligned_cols=124 Identities=10% Similarity=-0.069 Sum_probs=113.7
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL 120 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a 120 (284)
.+..+|+...++...+..+...+..++|+..+.+++.++|.+..+|..++.++..+| ++++++.++++++..+|.+..+
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG-LYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCcHH
Confidence 467889999999999988888888899999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l 167 (284)
|.+++.++..+|+ +++++.+++++++++|.+...+..+..+...+
T Consensus 89 ~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 89 PFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 9999999999999 99999999999999999987776655554433
No 99
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.50 E-value=3.7e-13 Score=123.00 Aligned_cols=139 Identities=12% Similarity=-0.004 Sum_probs=128.9
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhCHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---------------YTVWHFRRQIIETLHTDLQDELAF 106 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---------------~~aW~~R~~~L~~l~~~~~~eL~~ 106 (284)
+..+|+...++..++.++...+..++|+.++.++|.++|.+ ..+|+.++.++..+| ++++++.+
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~ 218 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ-AFSAAIES 218 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 45688899999999999999999999999999999999999 699999999999999 69999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHH-HHHHHHHHhc
Q 023284 107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDE-LDYCQMLLGE 183 (284)
Q Consensus 107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~ee-L~~~~~~l~~ 183 (284)
+++++.++|.+..+|+.++.++..+|+ +++|+.+++++++++|.|..+|..++.++..+++++++ ...+.+++..
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999998877 5566666643
No 100
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=9.6e-13 Score=101.67 Aligned_cols=119 Identities=9% Similarity=0.035 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
|....++...+..+...+..++|+..++++|.++|.+..+|..++.++..+| ++++++..+++++.++|.+..+|..++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-SFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4556778888888888888899999999999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhC------cCChhHHhHHHHHHHHc
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLD------AKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~d------pkN~~AW~~r~~vl~~l 167 (284)
.++..+|+ +++++.++.++++++ |.|..++.....+...+
T Consensus 80 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 80 TAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999 999999999999999 99999988887776554
No 101
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=7.5e-13 Score=100.64 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=92.4
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.+|.+..+|...+.+....| ++++++.++++++..+|.+..+|..++.++...|+ +++++.++.++++.+|.+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--YAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchhhhHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--hHHHHHHHHHHHhcCccCHHHH
Confidence 45566677777777777777 57777777777777777777777777777777777 7777777777777777777777
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
..++.++...|++++|+.+++++++.+|.+..+|...+.+...+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777776655544
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=6.8e-13 Score=108.44 Aligned_cols=130 Identities=10% Similarity=-0.019 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-HHHccCc--HHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGW--EDELD 175 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l~~l~~~--~eeL~ 175 (284)
++++++..+++++..+|.+..+|...+.++...|+ +++++.++.++++++|.+..+|...+.+ +...|++ ++|+.
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 47789999999999999999999999999999999 9999999999999999999999999999 7789998 99999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 176 YCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 176 ~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
+++++++.+|.+..+|..++.++...+++ ++++.++.+++.++|++.........
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANY-------AQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccH-------HHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 99999999999999999999999999884 78999999999999999887654443
No 103
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=1.3e-12 Score=105.85 Aligned_cols=118 Identities=9% Similarity=0.020 Sum_probs=110.8
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
-++....++...+.++...+..++|+.+++++|.++|.+..+|+.++.++..+| ++++++.++++++.++|++..+|+.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG-QHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 356677888888888888888899999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284 124 RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 124 R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl 164 (284)
++.++..+|+ +++++.++.++++++|.|..+|..++...
T Consensus 85 lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 85 LGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999 99999999999999999999999987654
No 104
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=6.8e-13 Score=101.76 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
.|....++...+.++...+..++|+.++++++..+|.+..+|..++.++...+ ++++++.++++++..+|.+..+|...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL-EFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45555555555555555555555666666666666666555555555555555 35555555555555555555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHc
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQAL 167 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l 167 (284)
+.++..+|+ +++++.+++++++++|.+..+|...+.++...
T Consensus 91 a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 555555555 55555555555555555555555555554443
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=3.8e-13 Score=119.88 Aligned_cols=184 Identities=9% Similarity=-0.062 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHh-hhCHHHHHHHHHHHHHhCCCC---
Q 023284 48 FSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETL-HTDLQDELAFVGRIAKSNSKN--- 117 (284)
Q Consensus 48 ~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l-~~~~~~eL~~~~~~l~~~pkn--- 117 (284)
...++...+.++...+..++|+.+++++|.+.|.. ..+++..+.++... | ++++++.++++++.+.|++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCCh
Confidence 35678888888888888999999999999998864 57899999999995 8 6999999999999998865
Q ss_pred ---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh-------HHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 118 ---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH-------AWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 118 ---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~-------AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
..++...|.++..+|+ +++++.+++++++++|.+.. +|...+.++..+|++++|+.+++++++++|++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQ--YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5678999999999999 99999999999999998764 57888999999999999999999999999998
Q ss_pred hHHHHHHHH-----HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 188 NSAWNQRYF-----VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 188 ~sAW~~r~~-----ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
..+...+.. .+. .+..+ -+++++..+++++.++|.+...+.-++..+
T Consensus 233 ~~~~~~~~l~~l~~~~~-~~~~~----~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVN-EGDSE----QLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -----HHHHHHHHHHHH-TTCTT----THHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH-cCCHH----HHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 876544322 111 11111 257889999999999887765554444333
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=4.2e-12 Score=108.56 Aligned_cols=165 Identities=7% Similarity=-0.086 Sum_probs=136.8
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh---
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH--- 155 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~--- 155 (284)
...+++.++..+...| ++++++..+++++..+|.+. .++..++.++...|+ +++++..++++++.+|++..
T Consensus 3 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDG-NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCCcHHH
Confidence 4678899999999989 69999999999999999874 799999999999999 99999999999999999986
Q ss_pred HHhHHHHHHHH------------------ccCcHHHHHHHHHHHhccCCChHHHHH-----------------HHHHHhc
Q 023284 156 AWSYRQWVLQA------------------LGGWEDELDYCQMLLGEDIFNNSAWNQ-----------------RYFVVTR 200 (284)
Q Consensus 156 AW~~r~~vl~~------------------l~~~~eeL~~~~~~l~~dp~n~sAW~~-----------------r~~ll~~ 200 (284)
+++.+|.++.. .|++++|+..++++|+.+|++..++.- ++.++..
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998876 457899999999999999999988743 3334444
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNPENE---SPWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P~ne---saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
.++ +++++..++++|+.+|+++ .++..++.++...++ ..+++..+...+
T Consensus 160 ~~~-------~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~----~~~A~~~~~~l~ 211 (225)
T 2yhc_A 160 RGA-------WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM----NAQAEKVAKIIA 211 (225)
T ss_dssp HTC-------HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred cCc-------HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC----cHHHHHHHHHHH
Confidence 444 4789999999999999987 468777777777653 445555555443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=3.2e-12 Score=106.84 Aligned_cols=135 Identities=6% Similarity=-0.019 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 023284 52 MSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL 131 (284)
Q Consensus 52 ~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l 131 (284)
+...+.++...+..++|+..+.+++ +| +..+|+.++.++..+| ++++++..+++++..+|.+..+|..+|.++..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILK-NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4445666667778899999999996 44 7889999999999999 699999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCcCCh----------------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 132 GTGAVNKELQFTKKMLSLDAKNY----------------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 132 ~~~~~~eel~~~~~aL~~dpkN~----------------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
|+ +++++..+++++++.|.+. .+|++++.++..+|++++|+++++++++++|.+..+..
T Consensus 85 ~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 85 EK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp TC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred cc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence 99 9999999999999988887 99999999999999999999999999999998865443
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=1.2e-12 Score=112.48 Aligned_cols=136 Identities=10% Similarity=0.168 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--- 113 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--- 113 (284)
+|....++...+.++...+..++|+.++.+++.+ .|....++...+.++...| ++++++.++.+++..
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999988 4778899999999999999 699999999999998
Q ss_pred -----CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 114 -----NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 114 -----~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
+|....++...+.++..+|+ +++++.++.+++++ +|.+..++...+.++...|++++|+.+++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68889999999999999999 99999999999999 8999999999999999999999999999999
Q ss_pred Hhc
Q 023284 181 LGE 183 (284)
Q Consensus 181 l~~ 183 (284)
+++
T Consensus 196 l~~ 198 (283)
T 3edt_B 196 LTR 198 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 109
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=2.5e-12 Score=99.99 Aligned_cols=118 Identities=10% Similarity=0.048 Sum_probs=105.7
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284 77 CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA 156 (284)
Q Consensus 77 ~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A 156 (284)
..+|.+..+|...+.++...| ++++++.++.+++..+|.+..+|..++.++..+|+ +++++..+.++++++|.+..+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKA 79 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCchhHHH
Confidence 467889999999999999999 69999999999999999999999999999999999 999999999999999999999
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhccCC-----ChHHHHHHHHH
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGEDIF-----NNSAWNQRYFV 197 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-----n~sAW~~r~~l 197 (284)
|..++.++..+|++++|+.++.++++++|. +..++.....+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 55555444433
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=5.7e-12 Score=100.41 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
..++...+.+....+..++|+..+.+++.++|.+..+|..++.++..+| ++++++.++++++..+|.+..+|...+.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555556666677777777777777777777777777777777 477777777777777777777777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH--HHHccCcHHHHHHHHHHHhc
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV--LQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v--l~~l~~~~eeL~~~~~~l~~ 183 (284)
..+|+ +++++.++.++++++|.+..+|.+.+.+ +...|++++|++.+.+....
T Consensus 92 ~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGK--FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77777 7777777777777777777777554444 55556677777766665443
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=5.2e-12 Score=95.89 Aligned_cols=126 Identities=16% Similarity=0.061 Sum_probs=117.1
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..+|....++...+.+....+..++|+..+.+++..+|.+..+|..++.++...| ++++++.++++++..+|.+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG-NYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-chHHHHHHHHHHHhcCccCHHHH
Confidence 45577888888888888888888899999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCc
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW 170 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~ 170 (284)
...+.++..+|+ +++++.++.++++++|.+..+|...+.++..+|++
T Consensus 84 ~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 84 GRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999 99999999999999999999999999999888765
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.5e-12 Score=119.25 Aligned_cols=203 Identities=8% Similarity=-0.066 Sum_probs=168.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CC
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY----TVWHFRRQIIETLHTDLQDELAFVGRIAKS------NS 115 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~----~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~p 115 (284)
+.....+...+..+...+..++|+.++++++.++|++. .+|..++.++..+| ++++++.++++++.. +|
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCch
Confidence 45556666677777778888999999999999999987 58999999999999 699999999999998 78
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCChhHHhHHHHHHHHccC-----------------cHH
Q 023284 116 KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKNYHAWSYRQWVLQALGG-----------------WED 172 (284)
Q Consensus 116 kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN~~AW~~r~~vl~~l~~-----------------~~e 172 (284)
....++...+.++..+|+ +++++.++.+++++ ++....++...+.++...|+ +++
T Consensus 124 ~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 889999999999999999 99999999999998 77778899999999999999 999
Q ss_pred HHHHHHHHHhcc------CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHc
Q 023284 173 ELDYCQMLLGED------IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYK 240 (284)
Q Consensus 173 eL~~~~~~l~~d------p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~ 240 (284)
|++++.+++++. +....++..++.++...+++ ++++.++.+++.+.|.+.. ++..+..++.
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF-------QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999998874 34446888899998888874 7788888888888776655 6666666665
Q ss_pred cCCccCCCChhhHHHHHhhhhc
Q 023284 241 DDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
..+ +..+++..+.++++-
T Consensus 275 ~~g----~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 275 FLG----QFEDAAEHYKRTLAL 292 (411)
T ss_dssp TTT----CHHHHHHHHHHHHHH
T ss_pred HCc----CHHHHHHHHHHHHHH
Confidence 553 345666666555443
No 113
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=9.3e-13 Score=115.10 Aligned_cols=173 Identities=8% Similarity=0.102 Sum_probs=151.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC--
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-- 114 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-- 114 (284)
.|....++...+.++...+..++|+.++.+++.+ .|....++...+.++..+| ++++++.++++++...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888889999999999988 5778899999999999999 6999999999999874
Q ss_pred ------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 115 ------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 115 ------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
|....++...+.++...|+ +++++.++++++++ +|....++...+.++...|++++|+++++++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778899999999999999 99999999999998 8888999999999999999999999999999
Q ss_pred Hhc-------------------------------------------------cCCChHHHHHHHHHHhcCCCCchhhhhH
Q 023284 181 LGE-------------------------------------------------DIFNNSAWNQRYFVVTRSPLLGGLIAMR 211 (284)
Q Consensus 181 l~~-------------------------------------------------dp~n~sAW~~r~~ll~~l~~~~~~~~~~ 211 (284)
++. +|.+..+|...+.++...|+ +
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~ 294 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK-------F 294 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC-------H
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC-------H
Confidence 985 45566777777777777776 4
Q ss_pred HHHHHHHHHHHhcCCC
Q 023284 212 DSEVNFTIEAILGNPE 227 (284)
Q Consensus 212 ~~el~~~~~~i~~~P~ 227 (284)
++++.++.+++++.|+
T Consensus 295 ~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 295 EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7889999999988775
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.44 E-value=2.3e-12 Score=107.75 Aligned_cols=136 Identities=8% Similarity=-0.022 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW 162 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~ 162 (284)
...++.++.++...| ++++++..+++++ +| +..+|..++.++...|+ +++++..++++++++|.+..+|+.+|.
T Consensus 6 ~~~~~~~g~~~~~~~-~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKK-DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--MTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 345678888888888 6999999999996 44 88999999999999999 999999999999999999999999999
Q ss_pred HHHHccCcHHHHHHHHHHHhccCCCh----------------HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCC
Q 023284 163 VLQALGGWEDELDYCQMLLGEDIFNN----------------SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNP 226 (284)
Q Consensus 163 vl~~l~~~~eeL~~~~~~l~~dp~n~----------------sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P 226 (284)
++..+|++++|+++++++++..|.+. .+|.++|.++..++++ +++++++.+++.++|
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-------KKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH-------HHHHHHHHHHHHcCc
Confidence 99999999999999999999998887 9999999999999884 789999999999999
Q ss_pred CCccH
Q 023284 227 ENESP 231 (284)
Q Consensus 227 ~nesa 231 (284)
++...
T Consensus 153 ~~~~~ 157 (213)
T 1hh8_A 153 EPRHS 157 (213)
T ss_dssp SGGGG
T ss_pred ccccc
Confidence 87654
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=5.5e-12 Score=100.50 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=115.4
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~ 161 (284)
...+|..++.+....| ++++++..+++++..+|.+..+|..++.++..+|+ +++++.++.++++++|.+..+|..++
T Consensus 12 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 12 RAEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--YGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4577888999999888 69999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH--HhcCCCCchhhhhHHHHHHHHHHHH
Q 023284 162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTIEAI 222 (284)
Q Consensus 162 ~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~~~i 222 (284)
.++..+|++++|+.+++++++.+|.+..++.+.+.+ +...+. ++++++.+.++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-------FERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHcccchH
Confidence 999999999999999999999999999999766554 333333 356666665544
No 116
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-12 Score=96.20 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=115.2
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
..|.+..+|+.++.++...| ++++++.++++++..+|++..+|..++.++...|+ +++++.+++++++.+|.+..+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~ 87 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKG-DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--FQLALKDCEECIQLEPTFIKGY 87 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTT-CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCchHHH
Confidence 35788999999999999999 69999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 158 SYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 158 ~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
..++.++..+|++++|+.+++++++.+|.+..++...+.++...+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988876543
No 117
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=1.1e-11 Score=92.43 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~ 161 (284)
...+|+.++.++...| ++++++.++++++..+|.+..+|...+.++...|+ +++++..+.++++.+|.+..+|...+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVG-NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567888888888888 68999999999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 162 WVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 162 ~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
.++..+|++++|++++.++++.+|.+..+|...+.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999998888776654
No 118
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=1.1e-12 Score=112.53 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHH-------hC-CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Q 023284 65 SSRSFQLTKEAIC-------LN-PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRRWVA 128 (284)
Q Consensus 65 s~~aL~~~~~~L~-------ln-P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~~ll 128 (284)
.++|+.++++++. .+ |....+|...+.++...| ++++++.++++++.. +|....++...+.++
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 3455555555555 23 788899999999999999 699999999999987 577888999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhc--------cCCChHHHH
Q 023284 129 EKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGE--------DIFNNSAWN 192 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~--------dp~n~sAW~ 192 (284)
...|+ +++++.++.+++++ +|....++...+.++..+|++++|+++++++++. +|.+..++.
T Consensus 96 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 96 GKRGK--YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHhcc--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999 99999999999998 6888999999999999999999999999999999 888889999
Q ss_pred HHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc---------CCCCccHHHHHH
Q 023284 193 QRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG---------NPENESPWRYLR 236 (284)
Q Consensus 193 ~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~---------~P~nesaW~y~~ 236 (284)
..+.++...+++ ++++.++.+++.+ +|.....|....
T Consensus 174 ~la~~~~~~g~~-------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T 3edt_B 174 NLASCYLKQGKY-------QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219 (283)
T ss_dssp HHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHH
T ss_pred HHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 999999888885 6677777777765 455555654443
No 119
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.42 E-value=2.1e-12 Score=100.58 Aligned_cols=101 Identities=8% Similarity=-0.049 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284 85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl 164 (284)
.|+.++.++...| ++++++..+++++..+|++..+|..+|.++..+|+ +++++.+++++++++|.+..+|..++.++
T Consensus 19 ~~~~~g~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLA-NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4666777777777 47777777777777777777777777777777777 77778888888888888777887777777
Q ss_pred HHccCcHHHHHHHHHHHhccCCCh
Q 023284 165 QALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 165 ~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
...|++++|+..++++++++|.+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 777777788888888887777654
No 120
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=2.8e-12 Score=103.68 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284 82 NYTVWHFRRQIIETLHTDLQDELAFVGRIAKS------------------NSKNYQLWHHRRWVAEKLGTGAVNKELQFT 143 (284)
Q Consensus 82 ~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------------------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~ 143 (284)
...++..+|..+...| ++++++.+|.+++.. +|.+..+|.+++.++..+|+ +++++..+
T Consensus 10 ~a~~~~~~G~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQK-DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--LHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHH
Confidence 3566777788887777 588888888888887 78888999999999999999 99999999
Q ss_pred HHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCCh-HHHHHHHHHHhc
Q 023284 144 KKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNN-SAWNQRYFVVTR 200 (284)
Q Consensus 144 ~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~-sAW~~r~~ll~~ 200 (284)
+++|+++|.+..+|+.+|.++..+|++++|+.++.++++++|+|. .+....+.+...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 556555555443
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=1.3e-12 Score=116.24 Aligned_cols=109 Identities=9% Similarity=0.053 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRR 125 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~ 125 (284)
|....++...+..+...+..++|+..++++|.++|.+..+|+.++.++..+| ++++++..+++++..+|.+..+|+.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-QPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455677777777777788889999999999999999999999999998888 588999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.++..+|+ +++++..+.++++++|.+....
T Consensus 80 ~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 80 QCQLEMES--YDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHcCC--HHHHHHHHHHHHHhCccchhhH
Confidence 99999988 9999999999999988774433
No 122
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=3e-12 Score=116.07 Aligned_cols=199 Identities=10% Similarity=-0.003 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CCCCh
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKS------NSKNY 118 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~pkn~ 118 (284)
..++...+.++...+..++|+.++++++.++|.+ ..+|..++.+....| ++++++.++++++.. .|...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3456667777777888899999999999999998 468899999999999 699999999999887 56667
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccC--------------------cHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGG--------------------WED 172 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~--------------------~~e 172 (284)
.++...+.++..+|+ +++++.++.+++++.|+.. .++...+.++...|+ +++
T Consensus 88 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 88 KASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 899999999999999 9999999999999988764 489999999999999 999
Q ss_pred HHHHHHHHHhc------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHc
Q 023284 173 ELDYCQMLLGE------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYK 240 (284)
Q Consensus 173 eL~~~~~~l~~------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~ 240 (284)
|++++.+++.+ .|....++...+.++...+++ ++++.++.+++.+.|.... ++..++.++.
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999987 555567888889888888874 7788888888887776665 6666666665
Q ss_pred cCCccCCCChhhHHHHHhhhh
Q 023284 241 DDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~ 261 (284)
..+ ++.+++..+.+++.
T Consensus 239 ~~g----~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 239 FLG----EFETASEYYKKTLL 255 (406)
T ss_dssp HTT----CHHHHHHHHHHHHH
T ss_pred HcC----ChHHHHHHHHHHHH
Confidence 543 34566666665544
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.40 E-value=4e-12 Score=98.76 Aligned_cols=120 Identities=13% Similarity=-0.093 Sum_probs=108.5
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH
Q 023284 112 KSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW 191 (284)
Q Consensus 112 ~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW 191 (284)
..+|.+..+|...+.++...|+ +++++.++.++++++|.+..+|+.++.++..+|++++|+.++.++++++|.+..+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK--YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 4578999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC-----CccHHHHHHHHHc
Q 023284 192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE-----NESPWRYLRGLYK 240 (284)
Q Consensus 192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~-----nesaW~y~~~ll~ 240 (284)
..+|.++..++.+ ++++.++.+++.++|+ +..++..+..+..
T Consensus 81 ~~l~~~~~~~~~~-------~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 81 FFLGQCQLEMESY-------DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH-------HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 7889999999999998 6667766655443
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=2.7e-12 Score=122.19 Aligned_cols=131 Identities=9% Similarity=-0.012 Sum_probs=119.1
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhCHHHHHHH
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---------------YTVWHFRRQIIETLHTDLQDELAF 106 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---------------~~aW~~R~~~L~~l~~~~~~eL~~ 106 (284)
+..+|+...++..++..+.+.+..++|+..+.++|.++|.+ ..+|++++.++..++ ++++|+.+
T Consensus 261 ~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~ 339 (457)
T 1kt0_A 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR-EYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 35678888999999999999999999999999999999999 799999999999999 69999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHH
Q 023284 107 VGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELD 175 (284)
Q Consensus 107 ~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~ 175 (284)
++++|.++|++..+|+.++.++..+|+ +++|+.+++++++++|.|..+|..++.++..+++++++..
T Consensus 340 ~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 340 CDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999998876653
No 125
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-11 Score=96.36 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=61.8
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY 118 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~ 118 (284)
+..+|....++...+......+..++|+.++++++.++|++ ..+|..++.++..++ ++++++.++++++..+|++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE-DYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHhhCccCH
Confidence 34445555555555555555555555555555555555555 555555555555555 35555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r 160 (284)
.+|..++.++..+|+ +++++.++.++++++|.+..+|...
T Consensus 100 ~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 100 KALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 555555555555555 5555555555555555555544443
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=2.4e-12 Score=95.45 Aligned_cols=108 Identities=7% Similarity=0.079 Sum_probs=101.8
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--Chh
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYH 155 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~ 155 (284)
++|.+..+|..++.++...| ++++++.++++++..+|.+..+|..++.++...|+ +++++.+++++++++|. +..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAG-NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSCCTTCHH
T ss_pred CCCCcHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccchHH
Confidence 47899999999999999888 69999999999999999999999999999999999 99999999999999999 999
Q ss_pred HHhHHHHHHHHc-cCcHHHHHHHHHHHhccCCCh
Q 023284 156 AWSYRQWVLQAL-GGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 156 AW~~r~~vl~~l-~~~~eeL~~~~~~l~~dp~n~ 188 (284)
+|..++.++..+ |++++|++++.+++..+|.+.
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999 999999999999999999864
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.39 E-value=2.2e-11 Score=91.62 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=101.3
Q ss_pred hCCCc-HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhH
Q 023284 78 LNPGN-YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHA 156 (284)
Q Consensus 78 lnP~~-~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~A 156 (284)
.+|.. ..+|+..+.++...| ++++++.++++++..+|.+..+|...+.++...|+ +++++.+++++++.+|.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCccHHH
Confidence 35555 678888888888888 58899999999999999999999999999888888 999999999999999999999
Q ss_pred HhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHh
Q 023284 157 WSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 157 W~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~ 199 (284)
|...+.++...|++++|+.+++++++.+|.+..++..++.+..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888777654
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.39 E-value=3.4e-12 Score=100.09 Aligned_cols=104 Identities=11% Similarity=0.021 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------
Q 023284 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------ 154 (284)
Q Consensus 81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------ 154 (284)
+...++...|.++...| ++++|+.+|+++|.++|++..+|+++|.++..+|+ +++++.+++++|+++|++.
T Consensus 6 d~A~a~~~lG~~~~~~~-~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQK-DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--FAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--HHHHHHHHHHHHHhCcccchhhHHH
Confidence 45567888899998888 69999999999999999999999999999999999 9999999999999998875
Q ss_pred -hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 155 -HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 155 -~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
.++..+|.++..++++++|++++.++|+.+|..
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 367778888888999999999999999988853
No 129
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.37 E-value=2.7e-12 Score=103.72 Aligned_cols=117 Identities=11% Similarity=0.028 Sum_probs=106.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------------CcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------------------DAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------------------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
...+|..+|..+...|+ +++++.+|.+++++ +|.+..+|++++.++..+|++++|+.+++
T Consensus 10 ~a~~~~~~G~~~~~~~~--~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKD--YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45678889999999999 99999999999999 89999999999999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHccC
Q 023284 179 MLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE-SPWRYLRGLYKDD 242 (284)
Q Consensus 179 ~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne-saW~y~~~ll~~~ 242 (284)
++|+++|.+..+|+.+|.++..++++ ++++.++.+++.++|+|. .+...+..+....
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~-------~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKL-------DEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcH-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999984 889999999999999998 6676666555443
No 130
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.37 E-value=3.2e-12 Score=105.19 Aligned_cols=102 Identities=11% Similarity=0.008 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 65 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 65 s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
.++|+..++++++++|++..+|+..|.++..+++ ++...... +. +++|+.+++
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~-~~~g~~al------------------------~~--~~eAi~~le 70 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ-FHSISDAK------------------------QM--IQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HSCHHHHH------------------------HH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc-cchhhhhH------------------------hH--HHHHHHHHH
Confidence 3566666666666666666666666666666653 22000000 00 345555555
Q ss_pred HHHHhCcCChhHHhHHHHHHHHc-----------cCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQAL-----------GGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~l-----------~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
++|+++|++..+|+++|.++..+ +++++|+++++++|+++|+|...+..
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555555554 47888888888888888887655443
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.37 E-value=1.5e-12 Score=108.78 Aligned_cols=134 Identities=9% Similarity=-0.098 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY----------------QLWHHRRWVAE 129 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~----------------~aW~hR~~ll~ 129 (284)
+++.+.++......++...+|..+|.++...| ++++++.++++++...|.+. .+|..++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 99 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKN-EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555666777777777777 57777777777777777776 78888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSP 202 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~ 202 (284)
.+|+ +++++.+++++++++|.+..+|+.++.++..+|++++|+.++.++++++|.+..++...+.+...++
T Consensus 100 ~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 100 KNKD--YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HhcC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 8888 8888888888888888888888888888888888888888888888888888888888877766554
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.37 E-value=4.4e-13 Score=112.03 Aligned_cols=149 Identities=12% Similarity=-0.066 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh-----------
Q 023284 86 WHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY----------- 154 (284)
Q Consensus 86 W~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~----------- 154 (284)
..+-+..+..++ +++++.+.++......++....|..+|.++...|+ +++++.++.+++++.|.+.
T Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 7 HHHHSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE--INEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred ccchhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 334444555555 47777777777777778888899999999999999 9999999999999999998
Q ss_pred -----hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284 155 -----HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 155 -----~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne 229 (284)
.+|..++.++..+|++++|+.+++++++.+|.+..++..+|.++..++++ ++++.++.+++.++|++.
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-------EEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHHCCCcH
Confidence 89999999999999999999999999999999999999999999998884 789999999999999999
Q ss_pred cHHHHHHHHHccCCc
Q 023284 230 SPWRYLRGLYKDDTE 244 (284)
Q Consensus 230 saW~y~~~ll~~~~~ 244 (284)
.++..+..+....++
T Consensus 157 ~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 157 DIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888877765543
No 133
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=7.8e-12 Score=114.56 Aligned_cols=179 Identities=8% Similarity=0.008 Sum_probs=147.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------hHHH
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICL------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------YQLW 121 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~l------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~~aW 121 (284)
.+.+....+..++|+..+.+++.+ .+....+++..|.+...+| ++++++.++.+++.+.++. ..++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 455666777889999999999998 3346689999999999999 6999999999999985544 4588
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHh-----cc-CCChH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLG-----ED-IFNNS 189 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~-----~d-p~n~s 189 (284)
...|.++..+|+ +++|+.++.+++++.+++. .++++.|.++..+|++++|++++.++++ .+ |....
T Consensus 188 ~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 188 SLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 899999999999 9999999999999877665 4899999999999999999999999999 57 88889
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHccCC
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN-----PENESPWRYLRGLYKDDT 243 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~-----P~nesaW~y~~~ll~~~~ 243 (284)
++...|.++..++++ ++++.++.+++.+. |.....+..++.++...+
T Consensus 266 ~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 266 AYFLITQIHYKLGKI-------DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp HHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999885 67788888888764 333334444555555444
No 134
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=6.8e-12 Score=113.73 Aligned_cols=204 Identities=9% Similarity=-0.015 Sum_probs=164.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhC-------------------
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTD------------------- 99 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~------------------- 99 (284)
.|....++...+.++...+..++|+..+.+++.+.|+. ..++...+.++...| +
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHH
Confidence 45556677778888888888899999999999988765 558999999999888 5
Q ss_pred -HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH
Q 023284 100 -LQDELAFVGRIAKS------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA 166 (284)
Q Consensus 100 -~~~eL~~~~~~l~~------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~ 166 (284)
+++++..+.+++.. .|....++...+.++...|+ +++++.++++++++.+++.. ++...+.++..
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 89999999999886 45556789999999999999 99999999999999887766 99999999999
Q ss_pred ccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCc------cHHHH
Q 023284 167 LGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENE------SPWRY 234 (284)
Q Consensus 167 l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ne------saW~y 234 (284)
.|++++|+.++++++++.+.. ..++...+.++...+++ ++++.++.+++.+.+... .++..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-------EKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999998877 67888889888888874 778888888887766553 35555
Q ss_pred HHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 235 LRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 235 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
++.++...+ +..+++..+.++++-
T Consensus 313 la~~~~~~g----~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 313 LGNAYTALG----NHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 555555443 345666665555443
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.36 E-value=8.6e-12 Score=92.41 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=102.8
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC--ChHH
Q 023284 113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF--NNSA 190 (284)
Q Consensus 113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~--n~sA 190 (284)
++|.+..+|...+.++...|+ +++++.+++++++++|.+..+|..++.++...|++++|+.+++++++.+|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGN--YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 378999999999999999999 999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcC-CCCchhhhhHHHHHHHHHHHHhcCCCCc
Q 023284 191 WNQRYFVVTRS-PLLGGLIAMRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 191 W~~r~~ll~~l-~~~~~~~~~~~~el~~~~~~i~~~P~ne 229 (284)
|..++.++..+ +++ +++++++.+++...|++.
T Consensus 79 ~~~l~~~~~~~~~~~-------~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGKE-------VEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSCS-------HHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCCH-------HHHHHHHHHHhhcccCCC
Confidence 99999999999 885 778999999999999875
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=9.7e-12 Score=110.52 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhH
Q 023284 80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSY 159 (284)
Q Consensus 80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~ 159 (284)
|.+..++..+|.++...| ++++++..+++++..+|.+..+|..++.++..+|+ +++++..++++++++|.+..+|+.
T Consensus 1 p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~ 77 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGR-KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELDGQSVKAHFF 77 (281)
T ss_dssp CCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 678899999999999999 69999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHhccCCCh
Q 023284 160 RQWVLQALGGWEDELDYCQMLLGEDIFNN 188 (284)
Q Consensus 160 r~~vl~~l~~~~eeL~~~~~~l~~dp~n~ 188 (284)
+|.++..+|++++|+..+.++++++|.+.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999999873
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.35 E-value=4.6e-12 Score=98.58 Aligned_cols=103 Identities=9% Similarity=-0.081 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVV 198 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll 198 (284)
..|..++.++...|+ +++++..++++++++|.+..+|+.+|.++..+|++++|+.+++++++++|.+..+|..++.++
T Consensus 18 ~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLAN--LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 357888999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 199 TRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 199 ~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
..+++ +++++..+.++++++|++..
T Consensus 96 ~~~g~-------~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHN-------ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHH-------HHHHHHHHHHHHC-------
T ss_pred HHcCC-------HHHHHHHHHHHHHhCcCCCC
Confidence 88877 47899999999999998753
No 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.3e-11 Score=108.07 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh------CCCChHH
Q 023284 51 TMSYFRAVYYSDERSSRSFQLTKEAICLNPGN----YTVWHFRRQIIETLHTDLQDELAFVGRIAKS------NSKNYQL 120 (284)
Q Consensus 51 a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~----~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------~pkn~~a 120 (284)
.+...+..+...+..++|+.++++++.++|++ ..++...+.+....| ++++++.++++++.. .|....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44455666667778899999999999999998 478889999999988 699999999999887 6667889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHHccC--------------------cHHHH
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQALGG--------------------WEDEL 174 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~l~~--------------------~~eeL 174 (284)
+...+.++...|+ +++++..+.+++++.++... ++...+.++...|+ +++++
T Consensus 86 ~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999 99999999999998776644 89999999999999 99999
Q ss_pred HHHHHHHhc------cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHHHHccC
Q 023284 175 DYCQMLLGE------DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRGLYKDD 242 (284)
Q Consensus 175 ~~~~~~l~~------dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ll~~~ 242 (284)
+++.+++.. .+....++...+.++...+++ +++++++.+++.+.|.... ++..+..++...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 999998887 444456788888888777774 6677788888777665544 666666555544
Q ss_pred CccCCCChhhHHHHHhhhh
Q 023284 243 TESWINDPRMLLSVFESFE 261 (284)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~ 261 (284)
+ +..+++..+.++++
T Consensus 237 g----~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 237 G----EFETASEYYKKTLL 251 (338)
T ss_dssp T----CHHHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHH
Confidence 3 34455555555543
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=8.9e-12 Score=114.09 Aligned_cols=204 Identities=10% Similarity=-0.036 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhC-----------------HH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICL------NPGNYTVWHFRRQIIETLHTD-----------------LQ 101 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~l------nP~~~~aW~~R~~~L~~l~~~-----------------~~ 101 (284)
.|....++...+.++...+..++|+..+.+++.+ .|....++...+.++..+| + ++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHH
Confidence 4666777888888888888889999999999998 6777889999999999888 6 88
Q ss_pred HHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHHccC
Q 023284 102 DELAFVGRIAKSN------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQALGG 169 (284)
Q Consensus 102 ~eL~~~~~~l~~~------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~l~~ 169 (284)
+++.++++++.+. |....++...+.++...|+ +++++.++.+++++.+++.. ++...+.++...|+
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD--FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 9999999988764 3445688889999999999 99999999999999887666 89999999999999
Q ss_pred cHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHHHHH
Q 023284 170 WEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRYLRG 237 (284)
Q Consensus 170 ~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y~~~ 237 (284)
+++|+.+++++++..+.. ..++..++.++...+++ ++++.++.+++.+.+.... ++..+..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF-------NTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999998865 57788888888888874 6778888888877655433 5555555
Q ss_pred HHccCCccCCCChhhHHHHHhhhhc
Q 023284 238 LYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 238 ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
++...+ +..++...+.++++-
T Consensus 352 ~~~~~g----~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 352 AHSAIG----GHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTT----CHHHHHHHHHHHHHH
T ss_pred HHHHhc----cHHHHHHHHHHHHHH
Confidence 555543 355666666665543
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=7.2e-13 Score=121.23 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
.++...++...+..+.+.+..++|+..+.++|.++|.+.. +..++ .+.+++..+. ..+|+++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~-~~~~~~~~l~---------~~~~~nl 236 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYG-KYQDMALAVK---------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCH-HHHHHHHHHH---------THHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcc-cHHHHHHHHH---------HHHHHHH
Confidence 3556667777777887888888999999999999888652 11222 1333332221 2488999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
+.++..+|+ +++++..|+++|+++|.|..+|+.++.++..+|++++|+.++.++++++|.|..++...+.+.......
T Consensus 237 a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 237 AACLIKLKR--YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHTTTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998 999999999999999999999999999999999999999999999999999999998887665443322
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 205 GGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 205 ~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
.+++...+.+++...|++..
T Consensus 315 ------~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 315 ------YQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------------
T ss_pred ------HHHHHHHHHHhhCCCCCCCC
Confidence 35566788888889888753
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=3.5e-11 Score=89.72 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
...+|...+.++...|+ +++++.++++++..+|.+..+|..++.++...|++++|+.++.++++.+|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN--IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45678889999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 023284 197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLY 239 (284)
Q Consensus 197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll 239 (284)
++..++++ +++++++.+++..+|++..+|..+..+.
T Consensus 81 ~~~~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRF-------EEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCH-------HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhH-------HHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99998874 7889999999999999999987765543
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.33 E-value=5.9e-13 Score=127.61 Aligned_cols=136 Identities=13% Similarity=0.051 Sum_probs=119.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTG 134 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~ 134 (284)
.+.++.+.+..++|+++++++|+++|++..+|+.++.++..+| ++++|++++++++.++|++..+|+.++.++..+|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~- 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE-CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK- 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 3344455667799999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCcCChhHHhHHHHH--HHHccCcHHHHHHHH-----------HHHhccCCChHHHHH
Q 023284 135 AVNKELQFTKKMLSLDAKNYHAWSYRQWV--LQALGGWEDELDYCQ-----------MLLGEDIFNNSAWNQ 193 (284)
Q Consensus 135 ~~~eel~~~~~aL~~dpkN~~AW~~r~~v--l~~l~~~~eeL~~~~-----------~~l~~dp~n~sAW~~ 193 (284)
+++|++.++++++++|.+..+|...+.+ +...+++++|++.++ ++++++|++..++..
T Consensus 90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 9999999999999999999999999988 777899999999999 999999887666543
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.33 E-value=3.8e-13 Score=120.77 Aligned_cols=181 Identities=8% Similarity=-0.104 Sum_probs=159.1
Q ss_pred eeecChhHHHHHHHH-------HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHH---------------------HHHH
Q 023284 41 PIAYKPEFSETMSYF-------RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHF---------------------RRQI 92 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~-------r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~---------------------R~~~ 92 (284)
.+.++|+..++|..+ +.++....++.+++......+.+.|....+|+. ...+
T Consensus 32 a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 32 ITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 456899999999999 788888888899999999999999998888877 4567
Q ss_pred HHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-cCC-hhHHhHHHHHHHHccCc
Q 023284 93 IETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLD-AKN-YHAWSYRQWVLQALGGW 170 (284)
Q Consensus 93 L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~d-pkN-~~AW~~r~~vl~~l~~~ 170 (284)
|...| +++++.+.++.++..+|... +.+.++.+..+.++ +++++..+..++... |.+ ..++++.|.++..+|++
T Consensus 112 L~~~g-~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 112 EAAQG-NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHT-CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCC-CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 77788 69999999999999999999 99999999999999 999999999887753 322 35899999999999999
Q ss_pred HHHHHHHHHHHhcc--CC-ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHH
Q 023284 171 EDELDYCQMLLGED--IF-NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWR 233 (284)
Q Consensus 171 ~eeL~~~~~~l~~d--p~-n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~ 233 (284)
++|+.++++++... |. ...++.+++.++..+|+. +++...+++++..+|+ +.++.
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-------deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-------SAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCc-HHHHH
Confidence 99999999999765 66 567999999999999984 7889999999999999 77664
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=1.3e-11 Score=96.69 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH-------
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS------- 189 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s------- 189 (284)
...+|...|.++.+.|+ +++|+.+|+++|+++|.+..+|+++|.++..+|++++|+++++++|+++|.+..
T Consensus 7 ~A~a~~~lG~~~~~~~~--~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKD--FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34567788999999999 999999999999999999999999999999999999999999999999998864
Q ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284 190 AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 190 AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
++..+|.++..++. ++++++++.++|..+|+.
T Consensus 85 ~~~~lg~~~~~~~~-------~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 85 AMSRAGNAFQKQND-------LSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCcCH
Confidence 56666777777776 488999999999999864
No 145
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=1.5e-11 Score=107.57 Aligned_cols=205 Identities=9% Similarity=-0.021 Sum_probs=161.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhC-------------------
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTD------------------- 99 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~------------------- 99 (284)
.|....++...+.++...+..++|+..+.+++.+.|+. ..++...+.++..+| +
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHH
Confidence 34456667777777777888899999999999887654 348888899988888 5
Q ss_pred -HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh------HHhHHHHHHHH
Q 023284 100 -LQDELAFVGRIAKS------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH------AWSYRQWVLQA 166 (284)
Q Consensus 100 -~~~eL~~~~~~l~~------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~------AW~~r~~vl~~ 166 (284)
+++++..+++++.. .|....++...+.++...|+ +++++.++++++++.+++.. ++...+.++..
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88999999988876 44556688889999999999 99999999999998777655 89999999999
Q ss_pred ccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc------HHHH
Q 023284 167 LGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES------PWRY 234 (284)
Q Consensus 167 l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes------aW~y 234 (284)
.|++++|+.++++++++.+.. ..++...+.++...+++ ++++.++.+++.+.|.... ++..
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-------EKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999998876 67788888888888874 7788888888877665433 5555
Q ss_pred HHHHHccCCccCCCChhhHHHHHhhhhcc
Q 023284 235 LRGLYKDDTESWINDPRMLLSVFESFEYQ 263 (284)
Q Consensus 235 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 263 (284)
+..++...+ +..++...+.+++.-.
T Consensus 309 la~~~~~~g----~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 309 LGNAYTALG----NHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHT----CHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC----ChHHHHHHHHHHHHHH
Confidence 555555543 3566777777666543
No 146
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=8.7e-12 Score=113.99 Aligned_cols=103 Identities=7% Similarity=0.025 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 84 TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 84 ~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
.+|+.++.++..++ ++++++..++++|.++|++..+|+.++.++..+|+ +++|+.++.++++++|.|..++...+.+
T Consensus 231 ~~~~nla~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 231 PCHLNIAACLIKLK-RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHHTTT-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 48999999999999 59999999999999999999999999999999999 9999999999999999999999998887
Q ss_pred HHHc-cCcHHHHHHHHHHHhccCCChH
Q 023284 164 LQAL-GGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 164 l~~l-~~~~eeL~~~~~~l~~dp~n~s 189 (284)
.... +..+++...+.+++..+|.+..
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 5543 4567888999999999998753
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-10 Score=90.50 Aligned_cols=122 Identities=14% Similarity=0.008 Sum_probs=114.6
Q ss_pred HHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284 76 ICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN---YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 76 L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn---~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk 152 (284)
...+|.+..+|+.++.+....| ++++++.++++++..+|.+ ..+|..++.++..+|+ +++++.+++++++++|.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCG-DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTSC
T ss_pred CccchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHhhCcc
Confidence 3467899999999999999989 6999999999999999998 9999999999999999 99999999999999999
Q ss_pred ChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 153 NYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 153 N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
+..+|..++.++..++++++|+.++.++++++|.+..+|.....+..+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887776544
No 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=4.5e-11 Score=109.46 Aligned_cols=209 Identities=9% Similarity=0.035 Sum_probs=162.2
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG-------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~-------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn 117 (284)
.+....++...+.++...+..++|+..+.+++.+.++ ...+++..|.++..+| ++++|+.++++++...++.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK-QYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHc
Confidence 3445677888888888888889999999999998444 4568999999999999 6999999999999887655
Q ss_pred h------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hC-cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-
Q 023284 118 Y------QLWHHRRWVAEKLGTGAVNKELQFTKKMLS-----LD-AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED- 184 (284)
Q Consensus 118 ~------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~-----~d-pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d- 184 (284)
. .++++.|.++..+|+ +++|+.++.++++ .+ |....++.+.|.++..+|++++|++++++++++.
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4 589999999999999 9999999999999 57 8889999999999999999999999999999984
Q ss_pred ----CCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 185 ----IFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 185 ----p~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
|.....+...+.+....+.. ..+++++..+.+. ...|....++..++.++...+ ++..+...+.+++
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g----~~~~A~~~~~~al 366 (383)
T 3ulq_A 296 KAGDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK----NFQKASAYFLKVE 366 (383)
T ss_dssp HHTCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 44444455566666666553 2346677777665 333333446666666666554 3567777777776
Q ss_pred hcccc
Q 023284 261 EYQKQ 265 (284)
Q Consensus 261 ~~~~~ 265 (284)
+-.+.
T Consensus 367 ~~~~~ 371 (383)
T 3ulq_A 367 QVRQL 371 (383)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 55443
No 149
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.29 E-value=2.9e-11 Score=99.42 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=61.1
Q ss_pred ceeecChhHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 023284 40 VPIAYKPEFSETMSYFRAVYYSDERS----------SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGR 109 (284)
Q Consensus 40 ~~I~~~p~~~~a~~~~r~~~~~~~~s----------~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~ 109 (284)
.+|+++|++.++|..++.++...++. ++|+..++++|+++|++..+|+.+|.++..+|. +
T Consensus 27 ~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~-l--------- 96 (158)
T 1zu2_A 27 NTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF-L--------- 96 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-H---------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc-c---------
Confidence 45778999999999888888765442 477777777777777777777777777776652 1
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh
Q 023284 110 IAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY 154 (284)
Q Consensus 110 ~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~ 154 (284)
.|+...+ .|+ +++++.+|+++|+++|.|.
T Consensus 97 ----~P~~~~a----------~g~--~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 97 ----TPDETEA----------KHN--FDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp ----CCCHHHH----------HHH--HHHHHHHHHHHHHHCTTCH
T ss_pred ----Ccchhhh----------hcc--HHHHHHHHHHHHHhCCCCH
Confidence 3333222 134 6777777777777777763
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=2.2e-10 Score=86.00 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
..++...+.++...+..++|+.++.+++..+|.+..+|...+.++...| ++++++.++++++..+|.+..+|...+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677777777777888899999999999999999999999999999999 699999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
...|+ +++++..++++++++|.+..++...+.+....|
T Consensus 88 ~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999 999999999999999999999999888876543
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=4.5e-11 Score=107.12 Aligned_cols=176 Identities=7% Similarity=0.046 Sum_probs=145.3
Q ss_pred ChhHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC
Q 023284 45 KPEFSETMSYFRA---VYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS 115 (284)
Q Consensus 45 ~p~~~~a~~~~r~---~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p 115 (284)
.+++..|..++.. ++...+..++|+.++.+++.+.++. ..++...+.++..+| ++++++.++++++.+.+
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ-RMPEAVQYIEKASVMYV 107 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 4677777666543 4566778899999999999987643 568888899999988 69999999999998854
Q ss_pred CC------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 116 KN------YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 116 kn------~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
+. ..++...+.++.. |+ +++++.++.+++++.+.. ..++...+.++..+|++++|++++++++++
T Consensus 108 ~~g~~~~~a~~~~~lg~~~~~-g~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 108 ENGTPDTAAMALDRAGKLMEP-LD--LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp TTTCHHHHHHHHHHHHHHHTT-TC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 4678888999988 88 999999999999998865 578899999999999999999999999999
Q ss_pred cCCChH------HHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 184 DIFNNS------AWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 184 dp~n~s------AW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
.|.+.. ++..++.+...++++ ++++.++++++ ++|+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~-------~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADY-------VAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHh-CCCCCCCCH
Confidence 887642 666677777777774 78999999999 999876543
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=5.4e-13 Score=127.87 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHH
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQW 162 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~ 162 (284)
..+|+.++.++...| ++++|++++++++..+|.+..+|..++.++..+|+ +++|+++++++++++|.+..+|+.++.
T Consensus 6 a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 6 AEELKTQANDYFKAK-DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--YGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HTTSSSSSSSTTTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344555555666667 69999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH--HhcCCCCchhhhhHHHHHHHHH-----------HHHhcCCCCc
Q 023284 163 VLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV--VTRSPLLGGLIAMRDSEVNFTI-----------EAILGNPENE 229 (284)
Q Consensus 163 vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l--l~~l~~~~~~~~~~~~el~~~~-----------~~i~~~P~ne 229 (284)
++..+|++++|+++++++++++|.+..++...+.+ +...+++ +++++.+. +++.++|+..
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-------ERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH-------CCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-------HHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999999999999999999999999877 4433332 33455555 5566666543
Q ss_pred c
Q 023284 230 S 230 (284)
Q Consensus 230 s 230 (284)
.
T Consensus 156 ~ 156 (477)
T 1wao_1 156 G 156 (477)
T ss_dssp S
T ss_pred c
Confidence 3
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=1.4e-10 Score=88.07 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------
Q 023284 80 PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------ 153 (284)
Q Consensus 80 P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------ 153 (284)
|+...+|+..+.+....| ++++++.++++++..+|.+..+|...+.++...|+ +++++.++.++++++|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKK-DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--YNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred ChHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhccccchhHHH
Confidence 445678888888888888 69999999999999999999999999999999998 999999999999999888
Q ss_pred -hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 154 -YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 154 -~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
..+|...+.++..+|++++|+++++++++.+| +..++...+.+...
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988 67777666655443
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.26 E-value=6.4e-10 Score=98.50 Aligned_cols=166 Identities=8% Similarity=-0.027 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT------VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----- 117 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~------aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----- 117 (284)
...+......+...+..++|++.+.+++...|.... ..+..+.+....| ++++++.++++++...++.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCchHH
Confidence 333333333444566679999999999999887542 2334455555555 6999999999999877665
Q ss_pred -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCcCCh----hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--
Q 023284 118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKML---SLDAKNY----HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN-- 187 (284)
Q Consensus 118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL---~~dpkN~----~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n-- 187 (284)
..+++..|.++...|+ +++++.++++++ +..|.+. .++++.|.++..+|++++|++++++++++.+..
T Consensus 154 ~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 NLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 6789999999999999 999999999999 4555543 699999999999999999999999999987532
Q ss_pred ----hHHHHHHHHHHhcCCCCchhhhhHHHH-HHHHHHHHhc
Q 023284 188 ----NSAWNQRYFVVTRSPLLGGLIAMRDSE-VNFTIEAILG 224 (284)
Q Consensus 188 ----~sAW~~r~~ll~~l~~~~~~~~~~~~e-l~~~~~~i~~ 224 (284)
..++++.|.+...++.+ +++ ..++.+++.+
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~-------~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYE-------EAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHH
Confidence 67889999999999986 556 5566666643
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.23 E-value=3.6e-10 Score=86.59 Aligned_cols=110 Identities=5% Similarity=-0.223 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---hhHHh
Q 023284 85 VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN---YHAWS 158 (284)
Q Consensus 85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN---~~AW~ 158 (284)
+++.++.++...| ++++++..+++++..+|.+. .+|...+.++...|+ +++++..++++++.+|.+ ..++.
T Consensus 4 ~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNG-KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--FQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 4667788888888 68999999999999999988 799999999999998 999999999999999999 78899
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHH
Q 023284 159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~l 197 (284)
.++.++..+|++++|+..+++++..+|++..+...+..+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 999999999999999999999999999988877665544
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.20 E-value=3.1e-11 Score=92.46 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHH
Q 023284 100 LQDELAFVGRIAKS---NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDY 176 (284)
Q Consensus 100 ~~~eL~~~~~~l~~---~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~ 176 (284)
+++++.++++++.. +|.+..+|...|.++..+|+ +++++.+++++++++|.+..++.+.+.++..+|++++|+++
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 45556666666665 46666666666666666666 66666666666666666666666666666666666666666
Q ss_pred HHHHHhccCCChHHHHHHHHH
Q 023284 177 CQMLLGEDIFNNSAWNQRYFV 197 (284)
Q Consensus 177 ~~~~l~~dp~n~sAW~~r~~l 197 (284)
+.++++.+|.+..+..+...+
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHH
Confidence 666666666666555444433
No 157
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=5.6e-10 Score=102.21 Aligned_cols=163 Identities=7% Similarity=-0.092 Sum_probs=139.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC-------ChHHH
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLN------PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK-------NYQLW 121 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~ln------P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk-------n~~aW 121 (284)
.+......+..++|+..+.+++.+. |....+++..|.+...+| ++.+++.++.+++...++ ...++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-QTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 4555556777899999999999873 345678899999999999 699999999999987654 24578
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC------ChhHHhHHHHHHHHccCcHHHHHHHHHHHh-----ccCCChHH
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAK------NYHAWSYRQWVLQALGGWEDELDYCQMLLG-----EDIFNNSA 190 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk------N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~-----~dp~n~sA 190 (284)
+..|.++..+|+ +++|++++.+++++.++ ...++++.|.++..+|++++|++++.++++ .+|....+
T Consensus 186 ~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 186 FVIAGNYDDFKH--YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 889999999999 99999999999997432 235788999999999999999999999999 89999999
Q ss_pred HHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284 191 WNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 191 W~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ 227 (284)
+...|.+...++.+ ++++.++++++.+.+.
T Consensus 264 ~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 264 LFGLSWTLCKAGQT-------QKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHTTCH-------HHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHH
Confidence 99999999999884 7889999999988654
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.18 E-value=8e-11 Score=90.17 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHH
Q 023284 63 ERSSRSFQLTKEAICL---NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKE 139 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~l---nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~ee 139 (284)
+..++|+.+++++|.+ +|++..+|..++.++..+| ++++++.++++++..+|++..++...+.++..+|+ ++++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR--YEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC--HHHH
Confidence 4557899999999999 5999999999999999999 69999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 140 LQFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 140 l~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
+..+.++++.+|.+.....+...+....+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999988777655544433
No 159
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=9.8e-10 Score=93.24 Aligned_cols=180 Identities=8% Similarity=-0.086 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC----CCCHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLG----TGAVNKELQF 142 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~----~~~~~eel~~ 142 (284)
+|+..+.++... .+..+++..+.++...+ ++++++.++++++.. .+..+++..+.++.. + + +++++.+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSG-DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--YPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--HHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--HHHHHHH
Confidence 466666666654 56777777777776655 577777777777654 466777777776665 4 3 6777777
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccC--CChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDI--FNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN 216 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp--~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~ 216 (284)
+.+++ ++.+..++++.+.++.. .+++++|++++.++++..| .+..|++..+.++..-.... .-+++++.
T Consensus 76 ~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~---~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP---EDDVKASE 150 (212)
T ss_dssp HHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS---CCHHHHHH
T ss_pred HHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC---CCHHHHHH
Confidence 77774 34566777777776655 5566777777777777766 34667777776665421100 01356677
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHccCCc--cCCCChhhHHHHHhhh
Q 023284 217 FTIEAILGNPENESPWRYLRGLYKDDTE--SWINDPRMLLSVFESF 260 (284)
Q Consensus 217 ~~~~~i~~~P~nesaW~y~~~ll~~~~~--~~~~~~~~~~~~~~~~ 260 (284)
++.+++.. |++..+.+.+..++..... .-.+.+.++..+..++
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 77777766 5566666555555544322 1223345555554443
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=1.9e-10 Score=106.68 Aligned_cols=118 Identities=8% Similarity=-0.054 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAK----------------SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM 146 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~----------------~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a 146 (284)
..+|..++.++...+ ++++|+.++++++. .+|.+..+|..++.++.++|+ +++++.+++++
T Consensus 223 a~~~~~~g~~~~~~g-~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQ-NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--WQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHH
Confidence 345666666666666 47777777777776 788888999999999999998 99999999999
Q ss_pred HHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCC
Q 023284 147 LSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPL 203 (284)
Q Consensus 147 L~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~ 203 (284)
|+++|.+..+|+.++.++..++++++|+++++++++++|.|..++...+.++..++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888887766544
No 161
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.15 E-value=2.3e-09 Score=94.88 Aligned_cols=155 Identities=7% Similarity=-0.043 Sum_probs=123.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCcHH----HHHH--HHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHH
Q 023284 61 SDERSSRSFQLTKEAICLNPGNYT----VWHF--RRQIIETLHTDLQDELAFVGRIAKSNSKNY------QLWHHRRWVA 128 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~lnP~~~~----aW~~--R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------~aW~hR~~ll 128 (284)
..+..++|+.++.+++...+.+.. +.++ .+.+....+ ++++++.++++++...++.. .+++..|.++
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 345568999999999998887665 3223 334333333 68999999999999765543 3789999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH-------hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHHHHHHH
Q 023284 129 EKLGTGAVNKELQFTKKMLS-------LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSAWNQRY 195 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~-------~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~ 195 (284)
..+|+ +++|+.++.++++ ..+....++++.|.++..+|++++|++++++++++.+.. ..+++++|
T Consensus 166 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 166 AENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHcCC--HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999 9999999999995 233445689999999999999999999999999988665 67899999
Q ss_pred HHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 196 FVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 196 ~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
.+...++.. ++++++++.+++.+
T Consensus 244 ~~~~~~g~~------~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 244 ECLRKLEYE------EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTCC------HHHHHHHHHHHHHH
T ss_pred HHHHHhCCc------HHHHHHHHHHHHHH
Confidence 999999853 36678888887754
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=1.2e-09 Score=82.79 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-------hH
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-------YQ 119 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-------~~ 119 (284)
+...++...+.+....+..++|+.++.+++..+|.+..+|..++.++...| ++++++.++++++..+|.+ ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 445677777888888888899999999999999999999999999999999 6999999999999999988 99
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG 168 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~ 168 (284)
+|...+.++..+|+ +++++.++.++++++| +...+...+.+...++
T Consensus 81 ~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999 7888887777766554
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=4.4e-10 Score=104.20 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAIC----------------LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRI 110 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~----------------lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~ 110 (284)
+...++...+..+.+.+..++|+..++++|. ++|.+..+|+.++.++..++ ++++++.+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g-~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Confidence 3445677777788888888999999999999 88999999999999999999 699999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHH
Q 023284 111 AKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDEL 174 (284)
Q Consensus 111 l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL 174 (284)
+.++|.+..+|+.++.++..+|+ +++|+..+.++++++|.|..++...+.+...++..+++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999998888776554
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.13 E-value=2.5e-11 Score=108.91 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=154.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHH-----------
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFR-------RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHH----------- 123 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R-------~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~h----------- 123 (284)
.....+|++.|++++.++|+...+|..| +.+|..+++ ..+.+..+.+.+.+.|....+|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 3455899999999999999999999999 899999996 578899999999999999988887
Q ss_pred ----------HHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc-CCC-hHHH
Q 023284 124 ----------RRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED-IFN-NSAW 191 (284)
Q Consensus 124 ----------R~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d-p~n-~sAW 191 (284)
...++...|+ ++++.+.++.++..+|.+. +.+.++.+..+.++|++++.++++++... |.+ ..++
T Consensus 98 v~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 4567888899 9999999999999999999 99999999999999999999999887753 222 3589
Q ss_pred HHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC--CC-CccHHHHHHHHHccCCccCCCChhhHHHHHhhh
Q 023284 192 NQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN--PE-NESPWRYLRGLYKDDTESWINDPRMLLSVFESF 260 (284)
Q Consensus 192 ~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~--P~-nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 260 (284)
++.|.++..+|+. ++++.++++++.-. |. ...++++++.++...++ ..++...+-+.+
T Consensus 175 ~~LG~al~~LG~~-------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr----~deA~~~l~~a~ 235 (282)
T 4f3v_A 175 VAHGVAAANLALF-------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN----ESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHTTCH-------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 9999999999984 88999999998544 55 44588888888887764 345555555443
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=1.1e-09 Score=83.75 Aligned_cols=109 Identities=9% Similarity=-0.079 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh---hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---hHHHHH
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY---HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN---NSAWNQ 193 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~---~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n---~sAW~~ 193 (284)
+++.++.++...|+ +++++..++++++.+|.+. .+|...|.++...|++++|+.++++++..+|++ ..++..
T Consensus 4 ~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGK--YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 46778888899999 9999999999999999999 799999999999999999999999999999999 888999
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
++.++..++.+ ++++..+.+++..+|+++.+..-+..
T Consensus 82 la~~~~~~g~~-------~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 82 LGLSQYGEGKN-------TEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHTTCH-------HHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCH-------HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999884 78999999999999999877654433
No 166
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=3.9e-09 Score=96.54 Aligned_cols=206 Identities=8% Similarity=-0.044 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC--
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPG-------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK-- 116 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~-------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk-- 116 (284)
+....++...+.++...+..++|+..+.+++.+.++ ...+++..|.+...+| ++++|++++++++.+.++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK-HYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcC
Confidence 455667777788888888889999999999987553 3567888999999999 699999999999986432
Q ss_pred ----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-
Q 023284 117 ----NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS-----LDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF- 186 (284)
Q Consensus 117 ----n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~-----~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~- 186 (284)
...+++..|.++..+|+ +++|+.++.++++ .+|....++...+.++..+|++++|++++++++++.+.
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 24578889999999999 9999999999999 89999999999999999999999999999999998543
Q ss_pred ----ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhhc
Q 023284 187 ----NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFEY 262 (284)
Q Consensus 187 ----n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
........+.+....+.. ..+++++.++.+ ....|....++..++.++...+ ++..++..+.++++-
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g----~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC----HFEQAAAFYRKVLKA 365 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Confidence 333333333333333321 234666766655 2222333334545555555543 456777777776654
Q ss_pred c
Q 023284 263 Q 263 (284)
Q Consensus 263 ~ 263 (284)
.
T Consensus 366 ~ 366 (378)
T 3q15_A 366 Q 366 (378)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=1e-08 Score=86.83 Aligned_cols=178 Identities=7% Similarity=-0.043 Sum_probs=145.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHH
Q 023284 46 PEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHH 123 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~h 123 (284)
..++.++...+.++...+..++|+..+.+++.. .+..+++..+.++..-| .++++++.++++++. +.+..+++.
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 456788888888888888889999999999875 68999999999987722 269999999999964 679999999
Q ss_pred HHHHHHH----hCCCCHHHHHHHHHHHHHhCc--CChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 124 RRWVAEK----LGTGAVNKELQFTKKMLSLDA--KNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 124 R~~ll~~----l~~~~~~eel~~~~~aL~~dp--kN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
.+.++.. .++ +.+++.++.++++..+ .+..++++.+.++.. .+++++|+.++.++++. |.+..|+++
T Consensus 91 Lg~~y~~g~g~~~d--~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 91 LARVLVNRQAGATD--VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHTCGGGSSCC--HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHcCCCCccC--HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 9999876 555 9999999999999999 469999999999988 77899999999999999 888889999
Q ss_pred HHHHHhcCCC--CchhhhhHHHHHHHHHHHHhcCCCCccHHHHH
Q 023284 194 RYFVVTRSPL--LGGLIAMRDSEVNFTIEAILGNPENESPWRYL 235 (284)
Q Consensus 194 r~~ll~~l~~--~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~ 235 (284)
.+.++..-.. .. .-+++++.++.++++.. ++.+-..+
T Consensus 168 Lg~~y~~g~gg~~~---~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 168 AGMMFQQGEKGFIE---PNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp HHHHHHHCBTTTBC---CCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHcCCCCCCC---CCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 9998765421 10 01478899999998774 44444333
No 168
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.03 E-value=2.4e-09 Score=81.13 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHH
Q 023284 102 DELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 102 ~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l 181 (284)
+++..+++++..+|.+..+|+..+.++...|+ +++++.++.++++++|.+..+|...+.++...|++++|+.++.+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666666666666 6666666666666666666666666666666666666666666666
Q ss_pred hccCCC
Q 023284 182 GEDIFN 187 (284)
Q Consensus 182 ~~dp~n 187 (284)
+++|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 666543
No 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.01 E-value=6.4e-09 Score=78.75 Aligned_cols=86 Identities=7% Similarity=-0.023 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM 146 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a 146 (284)
+|+..+.+++..+|++..+|+..+.++...| ++++++.++++++..+|.+..+|...+.++..+|+ +++++..+.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE-QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 5889999999999999999999999999999 69999999999999999999999999999999999 99999999999
Q ss_pred HHhCcCChh
Q 023284 147 LSLDAKNYH 155 (284)
Q Consensus 147 L~~dpkN~~ 155 (284)
++++|.+..
T Consensus 80 l~~~~~~~~ 88 (115)
T 2kat_A 80 LAAAQSRGD 88 (115)
T ss_dssp HHHHHHHTC
T ss_pred HHhcccccc
Confidence 999986543
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=1.8e-08 Score=89.14 Aligned_cols=171 Identities=7% Similarity=-0.142 Sum_probs=129.8
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 023284 77 CLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQL------WHHRRWVAEKLGTGAVNKELQFTKKMLSLD 150 (284)
Q Consensus 77 ~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~a------W~hR~~ll~~l~~~~~~eel~~~~~aL~~d 150 (284)
..+|.....+..+...+...| +++++++++.+++...|..... .+..+.++...|+ +++++.++.+++++.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~-~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~ 145 (293)
T 2qfc_A 69 YSDIERKKQFKDQVIMLCKQK-RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--YEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 345666677777777777778 6999999999999998876532 3344555566677 999999999999876
Q ss_pred cCC------hhHHhHHHHHHHHccCcHHHHHHHHHHH---hccCCCh----HHHHHHHHHHhcCCCCchhhhhHHHHHHH
Q 023284 151 AKN------YHAWSYRQWVLQALGGWEDELDYCQMLL---GEDIFNN----SAWNQRYFVVTRSPLLGGLIAMRDSEVNF 217 (284)
Q Consensus 151 pkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l---~~dp~n~----sAW~~r~~ll~~l~~~~~~~~~~~~el~~ 217 (284)
+++ ..+++..|.++...|++++|+.++++++ +..|.+. .++++.|.++..++++ ++++++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-------~~Al~~ 218 (293)
T 2qfc_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-------EESLYQ 218 (293)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH-------HHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH-------HHHHHH
Confidence 655 5689999999999999999999999999 5556543 6899999999999985 788899
Q ss_pred HHHHHhcCCCC------ccHHHHHHHHHccCCccCCCChhh-HHHHHhhhh
Q 023284 218 TIEAILGNPEN------ESPWRYLRGLYKDDTESWINDPRM-LLSVFESFE 261 (284)
Q Consensus 218 ~~~~i~~~P~n------esaW~y~~~ll~~~~~~~~~~~~~-~~~~~~~~~ 261 (284)
+++++.+.++. ..+++.++.++...++ +..+ ...+.+++.
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~----~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEY----EEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHH
Confidence 99988765432 3466666666666543 4555 444555544
No 171
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=5.1e-10 Score=83.28 Aligned_cols=88 Identities=9% Similarity=0.061 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhH
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHA 156 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~A 156 (284)
..+|..++.++...| ++++++.++++++..+|.+..+|..++.++..+|+ +++++.+++++++++|.+ ..+
T Consensus 4 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQG-LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 344555555555544 35555555555555555555555555555555555 555555555555555555 445
Q ss_pred HhHHHHHHHHccCcHHH
Q 023284 157 WSYRQWVLQALGGWEDE 173 (284)
Q Consensus 157 W~~r~~vl~~l~~~~ee 173 (284)
+..++.++..+|.++++
T Consensus 81 ~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhHhhh
Confidence 55555555544444333
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=1.1e-08 Score=83.88 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHhCCCCH
Q 023284 63 ERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK------SNSKNYQLWHHRRWVAEKLGTGAV 136 (284)
Q Consensus 63 ~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~------~~pkn~~aW~hR~~ll~~l~~~~~ 136 (284)
+..++|.+.+..+....+....++...+.+....| ++++++.++++++. ..|....++...+.++...|+ +
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 82 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMD-RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--W 82 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--H
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--H
Confidence 44467777555554433378899999999999999 69999999999998 556677889999999999999 9
Q ss_pred HHHHHHHHHHHHh------Cc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC--h----HHHHHHHHHHhcCCC
Q 023284 137 NKELQFTKKMLSL------DA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--N----SAWNQRYFVVTRSPL 203 (284)
Q Consensus 137 ~eel~~~~~aL~~------dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--~----sAW~~r~~ll~~l~~ 203 (284)
++++.++.+++++ ++ ....++...+.++...|++++|+.++++++...+.. . .++...+.+....++
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999998 33 345678899999999999999999999999765332 2 234677778877887
Q ss_pred CchhhhhHHHHHHHHHHHHhcCCCCccHH
Q 023284 204 LGGLIAMRDSEVNFTIEAILGNPENESPW 232 (284)
Q Consensus 204 ~~~~~~~~~~el~~~~~~i~~~P~nesaW 232 (284)
+ +++++++.+++.+.......+
T Consensus 163 ~-------~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 163 L-------LEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTCHH
T ss_pred H-------HHHHHHHHHHHHHHHHcCCHH
Confidence 4 677888888887666555554
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=5e-09 Score=93.68 Aligned_cols=139 Identities=8% Similarity=-0.028 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPG------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----- 117 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----- 117 (284)
..++...+.++...+..++|+.++.+++.+.++ -..++...+.++.. | ++++++.++++++.+.|+.
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g-~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L-DLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChhH
Confidence 345666677777788889999999999998543 24688888999888 7 6999999999999988765
Q ss_pred -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHH
Q 023284 118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSA 190 (284)
Q Consensus 118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sA 190 (284)
..++...+.++..+|+ +++++.++++++++.|++. .++...+.+...+|++++|+.++++++ ++|.+..+
T Consensus 154 ~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 6788999999999999 9999999999999988764 367777888888899999999999999 99988765
Q ss_pred HH
Q 023284 191 WN 192 (284)
Q Consensus 191 W~ 192 (284)
..
T Consensus 231 ~e 232 (307)
T 2ifu_A 231 ED 232 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 174
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.7e-09 Score=77.92 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSA 190 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sA 190 (284)
+..+|..+|.++...|+ +++++.+++++++++|.+..+|..++.++..+|++++|+++++++++++|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 56789999999999999 9999999999999999999999999999999999999999999999999999 788
Q ss_pred HHHHHHHHhcCCCC
Q 023284 191 WNQRYFVVTRSPLL 204 (284)
Q Consensus 191 W~~r~~ll~~l~~~ 204 (284)
+..++.++..++..
T Consensus 81 ~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 81 QYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhH
Confidence 88888877766654
No 175
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.93 E-value=6.7e-09 Score=74.40 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 117 NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 117 n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+..+|...+.++...|+ +++++.++.++++.+|.+..+|..++.++...+++++|+.++.++++++|.+..++..++.
T Consensus 8 ~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555555555555 6666666666666666666666666666666666666666666666666666666655555
Q ss_pred HH
Q 023284 197 VV 198 (284)
Q Consensus 197 ll 198 (284)
++
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 176
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.92 E-value=2.7e-07 Score=87.35 Aligned_cols=180 Identities=11% Similarity=0.004 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---hhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCCCHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIET---LHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK----LGTGAVNK 138 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~---l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~----l~~~~~~e 138 (284)
++|+..+.+++.. .+..+++..+.++.. ...++++++.++++++.. .+..+++..+.++.. .++ +++
T Consensus 204 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d--~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKE--PLK 277 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCC--HHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCC--HHH
Confidence 4555555555543 234455555554443 112455555555555543 344555555555554 333 556
Q ss_pred HHHHHHHHHHhCcCChhHHhHHHHHHHHc-----cCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHH
Q 023284 139 ELQFTKKMLSLDAKNYHAWSYRQWVLQAL-----GGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDS 213 (284)
Q Consensus 139 el~~~~~aL~~dpkN~~AW~~r~~vl~~l-----~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~ 213 (284)
++.++.++++. .+..+++..+.++... +++++|+.++.++++. .+..+++..+.++...+.. .-+++
T Consensus 278 A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~----~~~~~ 349 (490)
T 2xm6_A 278 ALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSE----EEHKK 349 (490)
T ss_dssp HHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCH----HHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCc----ccHHH
Confidence 66666665544 3455556666555554 4556666666666554 3445565555555443211 11355
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 214 EVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 214 el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
++.++.++++. ++..+|++++.++........+.+.++..+.++++
T Consensus 350 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 350 AVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 66666666554 45556666555555432222334455555555544
No 177
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.91 E-value=8.3e-08 Score=90.78 Aligned_cols=191 Identities=11% Similarity=0.028 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---hhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 51 TMSYFRAVYYSDE---RSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL---HTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 51 a~~~~r~~~~~~~---~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l---~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
++...+.++...+ ..++|+..+.+++..+|....+++..+.++... ..++++++.++++++ |.+..+++..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5566666666555 557899999999999999999988888888543 147889999999988 8999999999
Q ss_pred HHH-H--HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-----CcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 125 RWV-A--EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-----GWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 125 ~~l-l--~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-----~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
+.+ + ...++ +++++.++.++++.+ +..|+++.|.++. .| ++++|+.++.+++ +++..|+++.|.
T Consensus 255 g~~~~~~~~~~d--~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 255 AQLLYDFPELGD--VEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHSGGGCC--HHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHH
T ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 988 4 33455 899999999988654 8889999998887 44 7889999999998 889999999998
Q ss_pred HHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCCCCh-hhHHHHHh
Q 023284 197 VVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWINDP-RMLLSVFE 258 (284)
Q Consensus 197 ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~~~~-~~~~~~~~ 258 (284)
++..-.... .-+++++.++.++.+ +++..+.+.++.++... ..+..++ .+..-+..
T Consensus 327 ~y~~G~g~~---~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 327 IYRRGYLGK---VYPQKALDHLLTAAR--NGQNSADFAIAQLFSQG-KGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHTTTTSS---CCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSC-TTBCCCHHHHHHHHHH
T ss_pred HHHCCCCCC---cCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHH
Confidence 776521110 114778889988864 67777887766666544 3444443 33333333
No 178
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.90 E-value=4.6e-09 Score=77.13 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284 88 FRRQIIETLHTDLQDELAFVGRIAKSNSKNYQ-LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 88 ~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~-aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
.++.++...| ++++++..+++++..+|.+.. +|..+|.++..+|+ +++++.++.++++++|.+..+|.+
T Consensus 5 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQG-DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--WQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 4556666666 577888888888888888887 88888888888877 888888888888888888777755
Q ss_pred ccCcHHHHHHHHHHHhccCCChH
Q 023284 167 LGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 167 l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
+.+.+++.++.+++..+|++.+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHHHHHHhccCccccc
Confidence 3456677777777777776643
No 179
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.89 E-value=2.9e-08 Score=71.00 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHH
Q 023284 81 GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYR 160 (284)
Q Consensus 81 ~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r 160 (284)
.+..+|+..+.++...+ ++++++.++++++..+|.+..+|...+.++...|+ +++++.++.++++++|.+..++...
T Consensus 7 ~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45678888888888888 58888888888888888888888888888888888 8888888888888888888888888
Q ss_pred HHHHHHcc
Q 023284 161 QWVLQALG 168 (284)
Q Consensus 161 ~~vl~~l~ 168 (284)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88776543
No 180
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.88 E-value=5.9e-07 Score=84.99 Aligned_cols=175 Identities=7% Similarity=-0.047 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hhhCHHHHHHHHHHHHHhCCCC
Q 023284 46 PEFSETMSYFRAVYYS----DERSSRSFQLTKEAICLNPGNYTVWHFRRQIIET----LHTDLQDELAFVGRIAKSNSKN 117 (284)
Q Consensus 46 p~~~~a~~~~r~~~~~----~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~----l~~~~~~eL~~~~~~l~~~pkn 117 (284)
+.+.++....+.++.. .+..++|+..+.+++.. .+..+++..+.+... .+ ++++++.++.+++.. .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT--TC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHC--CC
Confidence 3445666666666655 34447788888888775 567788888877776 44 678888888887764 47
Q ss_pred hHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChH
Q 023284 118 YQLWHHRRWVAEK----LGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 118 ~~aW~hR~~ll~~----l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
..+++..+.++.. .++ +++++..+.++++. .+..++...+.++.. .+++++|++++.++++. .+..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~--~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVD--KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 7777777777766 445 77888888887665 467777777777766 56677888888887775 5677
Q ss_pred HHHHHHHHHhc----CCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHc
Q 023284 190 AWNQRYFVVTR----SPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYK 240 (284)
Q Consensus 190 AW~~r~~ll~~----l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~ 240 (284)
+++..+.++.. .+. +++++.++.+++.. ++..+++.+..++.
T Consensus 185 a~~~Lg~~y~~g~g~~~~-------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERN-------DAISAQWYRKSATS--GDELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHHHHHHTSSSCCC-------HHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcC-------HHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 77777777654 222 24555666665543 34445544444443
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.88 E-value=7.1e-09 Score=77.34 Aligned_cols=75 Identities=8% Similarity=0.002 Sum_probs=55.4
Q ss_pred hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 113 SNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 113 ~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
.+|++..+|+..|.++...|+ +++++.+++++++++|.+..+|..+|.++..+|++++|++++++++++.|.+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN--ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 467777777777777777777 777777777777777777777777777777777777778777777777665433
No 182
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.84 E-value=1.1e-08 Score=74.99 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=81.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh-HHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH-AWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~-AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
..++.++...|+ +++++..++++++.+|.+.. +|..+|.++..+|++++|+++++++++++|.+..+|.+.
T Consensus 4 ~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------ 75 (99)
T 2kc7_A 4 LKTIKELINQGD--IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK------ 75 (99)
T ss_dssp HHHHHHHHHHTC--HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH------
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH------
Confidence 356778888898 99999999999999999999 999999999999999999999999999999999998651
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 201 SPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 201 l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
.+.+++.++.+++..+|++.+
T Consensus 76 ---------~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 ---------MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ---------HHHHHHHHHCCTTHHHHCCSS
T ss_pred ---------HHHHHHHHHHHHhccCccccc
Confidence 135677888888888888754
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=5e-08 Score=75.84 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNY------TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN----- 117 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn----- 117 (284)
..++...+.++...+..++|+..+.+++.+.++.. .++...+.++...| ++++++.++++++...++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG-EFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcHH
Confidence 45667777777777788899999999998876543 47888888888888 5899999999998876654
Q ss_pred -hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 118 -YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 118 -~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
..++...+.++...|+ +++++.++.+++++.++. ..++...+.++...|++++|++++++++++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 6678888889889988 999999999998874332 456777888888899999999999998887544
No 184
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.83 E-value=1.7e-07 Score=88.63 Aligned_cols=198 Identities=10% Similarity=-0.015 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHH
Q 023284 48 FSETMSYFRAVYYSDERS----SRSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLW 121 (284)
Q Consensus 48 ~~~a~~~~r~~~~~~~~s----~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW 121 (284)
+..++...+.++..++.. +++..++..+...+|. +++..+.++...| .++++++.++.+++...|....++
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555655555433 3455566666666666 9999999998876 148899999999999999999999
Q ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH-H--HHccCcHHHHHHHHHHHhccCCChHHHHHH
Q 023284 122 HHRRWVAEKL----GTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-L--QALGGWEDELDYCQMLLGEDIFNNSAWNQR 194 (284)
Q Consensus 122 ~hR~~ll~~l----~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v-l--~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r 194 (284)
+..+.++... ++ +++++.++.++. |.+..++++.+.+ + ...+++++|+.++.++++. ++..|+++.
T Consensus 217 ~~Lg~~y~~g~~~~~d--~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPD--EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCC--HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCC--HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 9999988654 34 899999999998 9999999999998 5 4578899999999999964 589999999
Q ss_pred HHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHHHHHHHccCCccCC-CChhhHHHHHhhhhc
Q 023284 195 YFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRYLRGLYKDDTESWI-NDPRMLLSVFESFEY 262 (284)
Q Consensus 195 ~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y~~~ll~~~~~~~~-~~~~~~~~~~~~~~~ 262 (284)
|.++..-... ..-+++++.++.+++ |++..+.+.++.++... .... +...++..+.++.+.
T Consensus 290 g~~y~~G~g~---~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 290 GKLYYEGKWV---PADAKAAEAHFEKAV---GREVAADYYLGQIYRRG-YLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHCSSS---CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT-TTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCC---CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC-CCCCcCHHHHHHHHHHHHhh
Confidence 9988742111 011578999999997 99999998888777763 3343 344666666666554
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=3.6e-08 Score=87.11 Aligned_cols=127 Identities=9% Similarity=-0.070 Sum_probs=106.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-------CCCChHHH
Q 023284 55 FRAVYYSDERSSRSFQLTKEAICLNPGN------YTVWHFRRQIIETLHTDLQDELAFVGRIAKS-------NSKNYQLW 121 (284)
Q Consensus 55 ~r~~~~~~~~s~~aL~~~~~~L~lnP~~------~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~-------~pkn~~aW 121 (284)
.+.+....+..++|+..+.+++.+.+.. ..+++..|.+...+| ++++++.++++++.. .+....++
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG-YLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 4445555566799999999999975543 347899999999999 699999999999952 23344689
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccC-cHHHHHHHHHHHhcc
Q 023284 122 HHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGG-WEDELDYCQMLLGED 184 (284)
Q Consensus 122 ~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~-~~eeL~~~~~~l~~d 184 (284)
++.|.++..+|+ +++|+.++++++++.+++ ..+++++|.+...+|. +++|++++++++.+.
T Consensus 200 ~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 200 YNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999988766 6799999999999995 699999999999864
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=1.2e-07 Score=85.82 Aligned_cols=166 Identities=11% Similarity=-0.044 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYT-----VWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY------ 118 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~-----aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------ 118 (284)
.+...++.+....+..++|+..+++++...|.+.. +++..+.++...| ++++++..+++++...|+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44555566666677789999999999999886642 6778888888888 69999999999998766543
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc--------CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC---
Q 023284 119 QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDA--------KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN--- 187 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dp--------kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n--- 187 (284)
.+..+.+.++...|+ +++++..+.+++++.+ ....++...+.++...|++++|+.++.+++...+..
T Consensus 94 ~~~~~la~~~~~~G~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 94 WSLIQQSEILFAQGF--LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 235678889999999 9999999999999763 345677788999999999999999999999988763
Q ss_pred --hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcC
Q 023284 188 --NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGN 225 (284)
Q Consensus 188 --~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~ 225 (284)
..++...+.+....|++ ++++.++.+++.+.
T Consensus 172 ~~~~~~~~la~~~~~~g~~-------~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDL-------DNARSQLNRLENLL 204 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Confidence 34677777777777774 67888888887763
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.78 E-value=7.3e-08 Score=74.92 Aligned_cols=135 Identities=13% Similarity=-0.029 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC---
Q 023284 83 YTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNY------QLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN--- 153 (284)
Q Consensus 83 ~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~------~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN--- 153 (284)
..++...+.++...| ++++++.++++++...++.. .++...+.++...|+ +++++.++++++++.++.
T Consensus 9 ~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--FETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCc
Confidence 457788888888888 69999999999998876543 488889999999999 999999999999987664
Q ss_pred ---hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC------hHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 154 ---YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN------NSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 154 ---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n------~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
..++...+.++...|++++|+++++++++..+.. ..++...+.+....+.+ +++++++.+++.+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH-------DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHH
Confidence 6688899999999999999999999999875432 34566667777667763 7788888888876
Q ss_pred CCC
Q 023284 225 NPE 227 (284)
Q Consensus 225 ~P~ 227 (284)
...
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=3.8e-08 Score=73.30 Aligned_cols=77 Identities=9% Similarity=0.044 Sum_probs=68.2
Q ss_pred hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 78 LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 78 lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
.+|++..+|+.++.++...| ++++++.++++++..+|.+..+|..++.++..+|+ +++++..+++++++.|++....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHD-NASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhhcCCchh
Confidence 58999999999999999999 69999999999999999999999999999999999 9999999999999987654433
No 189
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=1.1e-07 Score=77.89 Aligned_cols=141 Identities=9% Similarity=-0.152 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh---CC--
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAIC------LNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS---NS-- 115 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~------lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~---~p-- 115 (284)
....++...+.+....+..++|+..+.+++. ..|....++...+.+....| ++++++.++++++.. .+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG-NWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCcc
Confidence 4567788888888888888999999999999 66677889999999999999 699999999999988 44
Q ss_pred --CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCCh------hHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 116 --KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNY------HAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 116 --kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~------~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
....++...+.++..+|+ +++++.++.+++++.++.. .++...+.+....|++++|++++.+++++....
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGD--LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 335678889999999999 9999999999997644322 235788899999999999999999999886554
Q ss_pred hHH
Q 023284 188 NSA 190 (284)
Q Consensus 188 ~sA 190 (284)
...
T Consensus 181 ~~~ 183 (203)
T 3gw4_A 181 EDS 183 (203)
T ss_dssp TCH
T ss_pred CCH
Confidence 433
No 190
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.60 E-value=3.3e-06 Score=89.37 Aligned_cols=175 Identities=9% Similarity=0.024 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCC----------
Q 023284 47 EFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSK---------- 116 (284)
Q Consensus 47 ~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pk---------- 116 (284)
+...+|..++..+.+.++..+|+++|.++ ++..+|...+.++..+| +++++++++..+....+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG-kyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 44778888888888888889999999775 88889999999999999 588999988776655433
Q ss_pred -----------------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284 117 -----------------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM 179 (284)
Q Consensus 117 -----------------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~ 179 (284)
+...|...|..+...|. +++|+.+|.++ ..|...+.++.++|.+++|++++.+
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~--YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33456666666667777 88888888886 5788888899999999999999998
Q ss_pred HHhccCCChHHHHHHHHHHhcCCCC-----------------ch------hhhhHHHHHHHHHHHHhcCCCCccHHHHHH
Q 023284 180 LLGEDIFNNSAWNQRYFVVTRSPLL-----------------GG------LIAMRDSEVNFTIEAILGNPENESPWRYLR 236 (284)
Q Consensus 180 ~l~~dp~n~sAW~~r~~ll~~l~~~-----------------~~------~~~~~~~el~~~~~~i~~~P~nesaW~y~~ 236 (284)
+ .|..+|..-+++.-..+.+ .+ ....++++|..++++|.++|.+...|..++
T Consensus 1247 A-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1247 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred h-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 8 5567887555443211110 00 012268899999999999999999998888
Q ss_pred HHHccC
Q 023284 237 GLYKDD 242 (284)
Q Consensus 237 ~ll~~~ 242 (284)
.++.+.
T Consensus 1322 iLyaKy 1327 (1630)
T 1xi4_A 1322 ILYSKF 1327 (1630)
T ss_pred HHHHhC
Confidence 887775
No 191
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.57 E-value=5.7e-06 Score=74.62 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-----hH
Q 023284 53 SYFRAVYYSDERSSRSFQLTKEAICLN--------PGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKN-----YQ 119 (284)
Q Consensus 53 ~~~r~~~~~~~~s~~aL~~~~~~L~ln--------P~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn-----~~ 119 (284)
...+.+....+..++|+..+++++.+. |....++...+.++...| ++++++.++++++...|+. ..
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666777799999999999876 456678888999999999 6999999999999988763 46
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhH-----HHHHHHHccCcHHHHHHHHHHHhccCCCh----
Q 023284 120 LWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSY-----RQWVLQALGGWEDELDYCQMLLGEDIFNN---- 188 (284)
Q Consensus 120 aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~-----r~~vl~~l~~~~eeL~~~~~~l~~dp~n~---- 188 (284)
++...+.+....|+ +++++..+++++.+.+. +...|.. ++.+....|+++++...+.+++...|.+.
T Consensus 176 ~~~~la~~~~~~g~--~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 176 CLAMLIQCSLARGD--LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 78888999999999 99999999999987433 2223332 33456788999999999999999887642
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE 227 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~ 227 (284)
.++...+.++...+++ +++++.+.+++...+.
T Consensus 254 ~~~~~la~~~~~~g~~-------~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 254 GQWRNIARAQILLGEF-------EPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHh
Confidence 2456667777777774 5667777777665443
No 192
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.56 E-value=1.7e-06 Score=86.43 Aligned_cols=187 Identities=5% Similarity=-0.124 Sum_probs=135.1
Q ss_pred eecChhHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh-------
Q 023284 42 IAYKPEFSETMSYFRAVYYSDERSSRSF-QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS------- 113 (284)
Q Consensus 42 I~~~p~~~~a~~~~r~~~~~~~~s~~aL-~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~------- 113 (284)
|...|.+.+.|..+.......+..++|. +++++++..+|++...|.....+....| +++++-..+++++..
T Consensus 336 L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~-~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT-KIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888888877776665556786 8889999999988888888888888877 588888888888864
Q ss_pred ----CCC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCChhHHhHHHHHHHHccC-cHHHHHH
Q 023284 114 ----NSK-----------NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL-DAKNYHAWSYRQWVLQALGG-WEDELDY 176 (284)
Q Consensus 114 ----~pk-----------n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~-dpkN~~AW~~r~~vl~~l~~-~~eeL~~ 176 (284)
.|. +..+|.....+..+.|. .+.+...+.+|++. .+...+.|...+.+-.+.+. .+.|...
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 253 34578887777777777 88888889998887 55567777766665555554 7888999
Q ss_pred HHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCC---CccHHHHHHHH
Q 023284 177 CQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPE---NESPWRYLRGL 238 (284)
Q Consensus 177 ~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~---nesaW~y~~~l 238 (284)
++++|+..|.+...|.....++...+.. +.+-..+++++...|+ ....|....-.
T Consensus 493 fe~~Lk~~p~~~~~w~~y~~fe~~~~~~-------~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 493 LELGLKYFATDGEYINKYLDFLIYVNEE-------SQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCH-------HHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999998888885554444444442 4455666777777763 34466554433
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=1.9e-06 Score=78.12 Aligned_cols=173 Identities=6% Similarity=0.014 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC------CChHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNP--GNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS------KNYQL 120 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP--~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p------kn~~a 120 (284)
..+..+.+.++...+..++|++.+.++|..+| .+..+......++..+| +.+.|.+.++++...+| .....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-NVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCccccccchHHHH
Confidence 44455777777778888999999999999997 89999999999999999 49999999999999999 34444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHHccCcHHHHHHHHHHHhc----------cCCCh
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQALGGWEDELDYCQMLLGE----------DIFNN 188 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~----------dp~n~ 188 (284)
..--+|+....|.+.+.+++.+|+.+++..|. ....... +..++|++++|.+.++.+++. +|+|.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 44457777777744499999999999998886 3333333 788899999999999988887 58899
Q ss_pred HHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH
Q 023284 189 SAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY 234 (284)
Q Consensus 189 sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y 234 (284)
.+..+...+-..+|. ++.+++.++...+|+|+-+-.+
T Consensus 256 ~~LaN~i~l~~~lgk---------~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 256 TFLANQITLALMQGL---------DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHTTC---------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCh---------HHHHHHHHHHHhCCCChHHHHH
Confidence 999887666555664 2356788999999999765433
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.45 E-value=4.2e-06 Score=77.47 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHT----------DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~----------~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~ 135 (284)
.+|+.+++++|+++|++..+|..+..+...+.. .+..++.- ..++..+|.+..++.-.+.++...|+
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd-- 292 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGK-- 292 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCC--
Confidence 689999999999999999999988776543210 01222221 12346778888887777666666788
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNS 189 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~s 189 (284)
+++++..+++++.++| +..+|.-.|++....|++++|++.+++++.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999996 5778889999999999999999999999999999874
No 195
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.44 E-value=1e-05 Score=80.81 Aligned_cols=180 Identities=4% Similarity=-0.125 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHH-HHHHHHHHhCCCChHH
Q 023284 49 SETMSYFRAVYYSDER-------SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDEL-AFVGRIAKSNSKNYQL 120 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~-------s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL-~~~~~~l~~~pkn~~a 120 (284)
...|..+-..-..... ..+...+|+++|..+|.++.+|..-...+...| +.+++. +.+++++...|++...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~-~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN-TDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS-CCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhCCCCHHH
Confidence 4556555444333321 135678999999999999999999999988887 467887 9999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------cC-----------ChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLD-----------AK-----------NYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~d-----------pk-----------N~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
|.....+....|+ ++++.+.++++++.- |. +..+|.....+..+.+..+.|...+.
T Consensus 381 wl~~a~~ee~~~~--~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 381 AFSLSEQYELNTK--IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998 999999999999752 43 34579888888888899999999999
Q ss_pred HHHhc-cCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHH-HHHHH
Q 023284 179 MLLGE-DIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPW-RYLRG 237 (284)
Q Consensus 179 ~~l~~-dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW-~y~~~ 237 (284)
++++. .+.....|...+.+-...++- .+++...+..+|+..|++...| .|+..
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d------~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKD------TKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSC------CHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 99998 445566777666555555431 2567778889999999999988 45543
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.39 E-value=5.4e-06 Score=76.74 Aligned_cols=155 Identities=8% Similarity=-0.040 Sum_probs=110.5
Q ss_pred HHHHhCCCcHHHHHH--HHHHHHHhh--hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---CCCC------HHHHH
Q 023284 74 EAICLNPGNYTVWHF--RRQIIETLH--TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKL---GTGA------VNKEL 140 (284)
Q Consensus 74 ~~L~lnP~~~~aW~~--R~~~L~~l~--~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l---~~~~------~~eel 140 (284)
.+...-|.+.+||-. |+.-+...+ ....+++.+++++++++|.+..+|..+.++...+ +... ...++
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 455667888777764 444333322 2468999999999999999999999887766422 2100 11222
Q ss_pred HHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHH
Q 023284 141 QFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIE 220 (284)
Q Consensus 141 ~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~ 220 (284)
.- ..++..+|.+..++.-.+.+....|++++|+..+++++.++| +..+|..+|.++.-.|+. +++++.+.+
T Consensus 265 ~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~-------~eA~e~~~~ 335 (372)
T 3ly7_A 265 DN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMN-------REAADAYLT 335 (372)
T ss_dssp HH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCH-------HHHHHHHHH
T ss_pred HH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCH-------HHHHHHHHH
Confidence 21 123356777777766666666667999999999999999997 467788889888888874 789999999
Q ss_pred HHhcCCCCccHHHHHHHH
Q 023284 221 AILGNPENESPWRYLRGL 238 (284)
Q Consensus 221 ~i~~~P~nesaW~y~~~l 238 (284)
++.++|..+ .+....++
T Consensus 336 AlrL~P~~~-t~~~~~~l 352 (372)
T 3ly7_A 336 AFNLRPGAN-TLYWIENG 352 (372)
T ss_dssp HHHHSCSHH-HHHHHHHS
T ss_pred HHhcCCCcC-hHHHHhCc
Confidence 999999986 44444444
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=7e-06 Score=75.25 Aligned_cols=190 Identities=11% Similarity=-0.045 Sum_probs=131.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNY-----------------TVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHR 124 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~-----------------~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR 124 (284)
.+..++|++.+..++...|+.. .+....+.++...| +++++++++.+++...++...+-..+
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG-AKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3455899999999999999764 35778888888888 69999999999998877765543322
Q ss_pred ------HHHHHHhCCCCHHHHHHHHHHHHHhCcCC------hhHHhHHHHHHHHccCcHHHHHHHHHHHhc------cCC
Q 023284 125 ------RWVAEKLGTGAVNKELQFTKKMLSLDAKN------YHAWSYRQWVLQALGGWEDELDYCQMLLGE------DIF 186 (284)
Q Consensus 125 ------~~ll~~l~~~~~~eel~~~~~aL~~dpkN------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~------dp~ 186 (284)
+.+....|. ++.++.++.+++...++. ..++...+.++...|++++|+.++.+++.. .+.
T Consensus 96 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDS--LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHCSCCSC--HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 223233355 899999999999865544 357778899999999999999999998876 333
Q ss_pred ChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCccHHHH---HHHHHccCCccCCCChhhHHHHHhhhh
Q 023284 187 NNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENESPWRY---LRGLYKDDTESWINDPRMLLSVFESFE 261 (284)
Q Consensus 187 n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nesaW~y---~~~ll~~~~~~~~~~~~~~~~~~~~~~ 261 (284)
...++...+.+...++.+ +++..++++++.+.+........ ....+...-....++..+...+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNL-------AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcH-------HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446777888888888875 66777777777655433322111 111111122234556677776666654
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.22 E-value=6.9e-07 Score=84.72 Aligned_cols=154 Identities=7% Similarity=-0.012 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 023284 49 SETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA 128 (284)
Q Consensus 49 ~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll 128 (284)
+.+|...+....+.++.++|+++|.+ .+++.+|...+.....+| .+++++.++..+.+. .++..+..--..++
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~g-~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSG-NWEELVKYLQMARKK-ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHh-CccchhHHHHHHHH
Confidence 46899998888888888999999965 467888998888888888 589999988888874 44466666677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhh
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLI 208 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~ 208 (284)
.++|+ +.+..++++ +.|..+|...|..+...|+|++|..+|.++ +.|..++.++.++|.+
T Consensus 105 ~Klg~--l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~y---- 164 (449)
T 1b89_A 105 AKTNR--LAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEY---- 164 (449)
T ss_dssp ----C--HHHHTTTTT------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCH----
T ss_pred HHhCC--HHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccH----
Confidence 78888 777776664 235569999999999999999999999977 5788888888888884
Q ss_pred hhHHHHHHHHHHHHhcCCCCccHHHHHHH
Q 023284 209 AMRDSEVNFTIEAILGNPENESPWRYLRG 237 (284)
Q Consensus 209 ~~~~~el~~~~~~i~~~P~nesaW~y~~~ 237 (284)
+++++++.++ ++..+|.-...
T Consensus 165 ---q~AVea~~KA-----~~~~~Wk~v~~ 185 (449)
T 1b89_A 165 ---QAAVDGARKA-----NSTRTWKEVCF 185 (449)
T ss_dssp ---HHHHHHHHHH-----TCHHHHHHHHH
T ss_pred ---HHHHHHHHHc-----CCchhHHHHHH
Confidence 7788888887 45667755433
No 199
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=4.3e-05 Score=81.04 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=59.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 023284 56 RAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGA 135 (284)
Q Consensus 56 r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~ 135 (284)
+.+....++.++|+.+|+++- .+..| ...++..++ .+++++++.+++ ....+|+..|..+...|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~-nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~-- 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIG-NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM-- 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHh-hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC--
Confidence 344445566666666666642 11111 122233444 355555555544 445666666666666666
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhcc
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~d 184 (284)
+.+|+++|.++ +|..+|...+.++.++|+|+++++++..+++..
T Consensus 1121 ~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 66666666443 555666666666666666666666666555554
No 200
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.13 E-value=8.1e-05 Score=67.36 Aligned_cols=155 Identities=7% Similarity=-0.106 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023284 68 SFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNS--KNYQLWHHRRWVAEKLGTGAVNKELQFTKK 145 (284)
Q Consensus 68 aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~p--kn~~aW~hR~~ll~~l~~~~~~eel~~~~~ 145 (284)
|+..+++.+...+....+....+.++...| +++++|+.+.+.|..+| .+..+..-...++.++|+ .+.|.+.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g-~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILG-DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--VSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 677788888776677788889999999988 69999999999999997 889999999999999999 9999999999
Q ss_pred HHHhCcC----ChhHHhHH--HHHHHHcc--CcHHHHHHHHHHHhccCCChH--HHHHHHHHHhcCCCCchhhhhHHHHH
Q 023284 146 MLSLDAK----NYHAWSYR--QWVLQALG--GWEDELDYCQMLLGEDIFNNS--AWNQRYFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 146 aL~~dpk----N~~AW~~r--~~vl~~l~--~~~eeL~~~~~~l~~dp~n~s--AW~~r~~ll~~l~~~~~~~~~~~~el 215 (284)
+.+.+|. +-....+. +|+-...| .+++|+..++++.+..|...+ .... +..++|++ +++-
T Consensus 162 ~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~-------~eAe 231 (310)
T 3mv2_B 162 YTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNI-------AEAQ 231 (310)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCH-------HHHH
T ss_pred HHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCH-------HHHH
Confidence 9999993 33344443 55555555 899999999999998887222 3222 55667774 5566
Q ss_pred HHHHHHHhc----------CCCCccHHHHH
Q 023284 216 NFTIEAILG----------NPENESPWRYL 235 (284)
Q Consensus 216 ~~~~~~i~~----------~P~nesaW~y~ 235 (284)
+.++.+++. +|+|+.+-..+
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 666666665 48888876444
No 201
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=4.9e-05 Score=61.66 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC-c-CChhHHhHHHHHHHHccCcHHHHHHHHHH
Q 023284 104 LAFVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLD-A-KNYHAWSYRQWVLQALGGWEDELDYCQML 180 (284)
Q Consensus 104 L~~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~d-p-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~ 180 (284)
-+-+.+.+..+|.+.++.+.-+|.|-+.+. ...++.+.+++.+++.+ | ++-.++++.+....++++|++|+.+++++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555666788888888888888887652 11668999999999998 7 77899999999999999999999999999
Q ss_pred HhccCCChHHHHHHHHHHh
Q 023284 181 LGEDIFNNSAWNQRYFVVT 199 (284)
Q Consensus 181 l~~dp~n~sAW~~r~~ll~ 199 (284)
|+++|+|..|..-+..+-.
T Consensus 98 L~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 98 LQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHCTTCHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 9999999988877665543
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.00 E-value=3.6e-05 Score=57.01 Aligned_cols=73 Identities=14% Similarity=0.005 Sum_probs=49.5
Q ss_pred CCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 114 NSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 114 ~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
+|++..+|.-++.++...+. ....++...++++|++||+|..++...|.+....|+|++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56666777777666644332 22466777777777777777777777777777777777777777777777776
No 203
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.97 E-value=1.2e-05 Score=76.08 Aligned_cols=169 Identities=9% Similarity=0.069 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 023284 50 ETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAE 129 (284)
Q Consensus 50 ~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~ 129 (284)
.+|...+..+...+..++|..+|..+ ..|...+.++..+| ++++|++++.++ .+..+|.--..+..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg-~yq~AVea~~KA-----~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG-EYQAAVDGARKA-----NSTRTWKEVCFACV 188 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTT-CHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhc-cHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence 37888888888888888999999977 46888899999999 599999999988 47888988888888
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhh
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIA 209 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~ 209 (284)
..|+ +..|..+... |..+|.+... ...++.+.|.+++++.++++++.+++.+..+|...+.+..+..- .
T Consensus 189 ~~~e--f~lA~~~~l~-L~~~ad~l~~---lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p-----~ 257 (449)
T 1b89_A 189 DGKE--FRLAQMCGLH-IVVHADELEE---LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-----Q 257 (449)
T ss_dssp HTTC--HHHHHHTTTT-TTTCHHHHHH---HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-----H
T ss_pred HcCc--HHHHHHHHHH-HHhCHhhHHH---HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH-----H
Confidence 8888 8888777665 4477776442 44567899999999999999999999999999999888776531 1
Q ss_pred hHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHccCC
Q 023284 210 MRDSEVNFTIEAILGNP-----ENESPWRYLRGLYKDDT 243 (284)
Q Consensus 210 ~~~~el~~~~~~i~~~P-----~nesaW~y~~~ll~~~~ 243 (284)
-+.+.++.+-+.|.+.| .+...|.-+..++...+
T Consensus 258 k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 258 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 13556677777777777 77788888877776553
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00027 Score=55.49 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCCCHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEK----LGTGAVNKELQ 141 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~----l~~~~~~eel~ 141 (284)
++|+..+.++...+..... .+.++...+ ..+++++++++++.. .+..+.+..+.++.. .++ +.+++.
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~-~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~ 82 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQI-NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD--LRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTS-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--HHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCC-CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc--HHHHHH
Confidence 6899999999988755554 565555433 578899999999987 788999999999887 455 999999
Q ss_pred HHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 142 FTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 142 ~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
++.++.+. .+..+.++.+.++.. .+++++|+.++.++++. .+..|..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~ 133 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACG 133 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence 99999987 789999999999988 78899999999999987 4444443
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.94 E-value=7.2e-05 Score=55.33 Aligned_cols=72 Identities=8% Similarity=-0.103 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Q 023284 79 NPGNYTVWHFRRQIIETLHT--DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAK 152 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~--~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpk 152 (284)
+|++..+|..++.++...+. ...++...++++|..+|++..++...|.+....|+ +.+++..+.++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 46666666666666643331 13566666666666666666666666666666666 66666666666666666
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.00022 Score=55.96 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH----ccCcHHHH
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA----LGGWEDEL 174 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~----l~~~~eeL 174 (284)
++++++.++.++......... .+.++..-+. .++++.++.++.+. .+..+.++.+.++.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~--~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQIN--KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSC--HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCC--HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 578999999999998755554 6666655555 88899999999987 788999999999988 77899999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhc
Q 023284 175 DYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILG 224 (284)
Q Consensus 175 ~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~ 224 (284)
+++.++++. .+..|.++.+.+...-.... .-+++++.++.++.+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~---~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVV---KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSC---CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCC---cCHHHHHHHHHHHHHC
Confidence 999999987 78999999998887621110 0147889999999876
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=5.5e-05 Score=69.17 Aligned_cols=169 Identities=6% Similarity=-0.042 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHHhhhCHHHHHHHHHHHHHhCCCC-
Q 023284 45 KPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWH------FRRQIIETLHTDLQDELAFVGRIAKSNSKN- 117 (284)
Q Consensus 45 ~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~------~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn- 117 (284)
.+....+....+.++.+.+..++|++++..++.+.+....+-. ..+.+....| .++.++.++..++...++.
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSS
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC
Confidence 3455678888889998888889999999999987766543322 2222222234 5889999999988754333
Q ss_pred -----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------CcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 118 -----YQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL------DAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 118 -----~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~------dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
..++...+.++...|+ +.+++.++.+++.. .+....++...+.++..+|++++|..++++++...+.
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 130 RVFLKHSLSIKLATLHYQKKQ--YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp CCSSHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccC--hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 4677888999999999 99999999999875 3334568888899999999999999999999988655
Q ss_pred ChHHHH-------HHHHHHhcCCCCchhhhhHHHHHHHHHHHHh
Q 023284 187 NNSAWN-------QRYFVVTRSPLLGGLIAMRDSEVNFTIEAIL 223 (284)
Q Consensus 187 n~sAW~-------~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~ 223 (284)
...... ..|.+....+. ++++..++.+++.
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~-------y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHCEDKD-------YKTAFSYFFESFE 244 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSC-------HHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHH
Confidence 433322 22333333333 3556666666654
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=0.00048 Score=55.81 Aligned_cols=98 Identities=8% Similarity=0.053 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCCHHHHHHH
Q 023284 67 RSFQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSN-S-KNYQLWHHRRWVAEKLGTGAVNKELQF 142 (284)
Q Consensus 67 ~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~-p-kn~~aW~hR~~ll~~l~~~~~~eel~~ 142 (284)
.+-+.|...+..+|.+.++.+.-+++|.+.. .+.++.+.+++.++..+ | ++-.++++.+....++++ +.+++.+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--HHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--HHHHHHH
Confidence 4455666777788999999999999998855 24679999999999999 7 678999999999999999 9999999
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
++++|+++|.|..|-.-+..+-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999998877666544
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.71 E-value=0.00036 Score=62.44 Aligned_cols=110 Identities=7% Similarity=-0.073 Sum_probs=84.1
Q ss_pred HHhCCCcHHHHHHHHHHHHHh-h---------hCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHh-----CCCCHHH
Q 023284 76 ICLNPGNYTVWHFRRQIIETL-H---------TDLQDELAFVGRIAKSNSK--NYQLWHHRRWVAEKL-----GTGAVNK 138 (284)
Q Consensus 76 L~lnP~~~~aW~~R~~~L~~l-~---------~~~~~eL~~~~~~l~~~pk--n~~aW~hR~~ll~~l-----~~~~~~e 138 (284)
-..+|++..++++.+.+.... + .....+...++++++++|+ +-.+|...|.++..+ |. .++
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd--~ek 222 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG--MEK 222 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC--HHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC--HHH
Confidence 345677778888877776542 1 1256788888888888888 555888888888885 66 888
Q ss_pred HHHHHHHHHHhCcC-ChhHHhHHHHHHHH-ccCcHHHHHHHHHHHhccCCC
Q 023284 139 ELQFTKKMLSLDAK-NYHAWSYRQWVLQA-LGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 139 el~~~~~aL~~dpk-N~~AW~~r~~vl~~-l~~~~eeL~~~~~~l~~dp~n 187 (284)
+..+++++|+++|. |..+.+.-+..+.. .++++++..++++++..+|+.
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 88888888888885 48888888777765 488888888888888888873
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.62 E-value=0.00074 Score=60.44 Aligned_cols=113 Identities=11% Similarity=-0.042 Sum_probs=91.2
Q ss_pred HHHHhCCCChHHHHHHHHHHHHh-CC-----C---CHHHHHHHHHHHHHhCcC--ChhHHhHHHHHHHH-----ccCcHH
Q 023284 109 RIAKSNSKNYQLWHHRRWVAEKL-GT-----G---AVNKELQFTKKMLSLDAK--NYHAWSYRQWVLQA-----LGGWED 172 (284)
Q Consensus 109 ~~l~~~pkn~~aW~hR~~ll~~l-~~-----~---~~~eel~~~~~aL~~dpk--N~~AW~~r~~vl~~-----l~~~~e 172 (284)
.+-..+|++..+++..+.+.... +. . ....+....++++++||+ +-.||...|.+... .|+.++
T Consensus 143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence 34467899999988888777542 21 1 267788999999999999 67799999999998 489999
Q ss_pred HHHHHHHHHhccCCC-hHHHHHHHHHHhcC-CCCchhhhhHHHHHHHHHHHHhcCCCC
Q 023284 173 ELDYCQMLLGEDIFN-NSAWNQRYFVVTRS-PLLGGLIAMRDSEVNFTIEAILGNPEN 228 (284)
Q Consensus 173 eL~~~~~~l~~dp~n-~sAW~~r~~ll~~l-~~~~~~~~~~~~el~~~~~~i~~~P~n 228 (284)
|.++++++|+++|+. ..+.++.+..+... ++ .+++..+++++|..+|..
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-------~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-------RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-------HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-------HHHHHHHHHHHHcCCCCC
Confidence 999999999999974 89988888766553 55 366788999999988884
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.47 E-value=0.0013 Score=48.87 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhC-------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHH
Q 023284 123 HRRWVAEKLGTGAVNKELQFTKKMLSLD-------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRY 195 (284)
Q Consensus 123 hR~~ll~~l~~~~~~eel~~~~~aL~~d-------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~ 195 (284)
.-|..+...+. +..++..+..+++.. +.....+.+.+.++.++|++++|+..++++++.+|.+..+.++++
T Consensus 10 ~lG~~~~~~~~--y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEAD--YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34555555555 666666666666542 234456666777777777777777777777777777777766665
Q ss_pred H
Q 023284 196 F 196 (284)
Q Consensus 196 ~ 196 (284)
.
T Consensus 88 ~ 88 (104)
T 2v5f_A 88 Y 88 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.35 E-value=0.0083 Score=57.25 Aligned_cols=134 Identities=10% Similarity=-0.042 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----------------
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVA----------------- 128 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll----------------- 128 (284)
.++..+++++|..+|....+|..-...+...| +.+++...+++++.. |++...|..-+...
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~-~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG-QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 35778999999999999999999888888877 689999999999999 99998886543321
Q ss_pred -----------------------HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHcc-CcHHHHHHHHHHHhcc
Q 023284 129 -----------------------EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQMLLGED 184 (284)
Q Consensus 129 -----------------------~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~-~~~eeL~~~~~~l~~d 184 (284)
.+.+. .+.+...++++ ...+..++.|...+.+-..++ +.+.|...++++++..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~--~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRG--LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCC--HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 01222 56677788888 444457788877666655566 5899999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCC
Q 023284 185 IFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 185 p~n~sAW~~r~~ll~~l~~~ 204 (284)
|++...|....-....++..
T Consensus 351 ~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHcCCH
Confidence 99887766544444444443
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.32 E-value=0.004 Score=46.20 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHH
Q 023284 85 VWHFRRQIIETLHTDLQDELAFVGRIAKSN-------SKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAW 157 (284)
Q Consensus 85 aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-------pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW 157 (284)
-.+..|..+...+ ++..++.+++.++... +....++.+-+.++.++|+ +++|+..++++++++|.+..+.
T Consensus 7 dc~~lG~~~~~~~-~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~--~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 7 DCFELGKVAYTEA-DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--LDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHcc-chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHH
Confidence 3445567777766 5888888888887753 3456778888888888888 8888888888888888888887
Q ss_pred hHHHHH
Q 023284 158 SYRQWV 163 (284)
Q Consensus 158 ~~r~~v 163 (284)
++++++
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 776643
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.18 E-value=0.0033 Score=60.22 Aligned_cols=124 Identities=10% Similarity=0.033 Sum_probs=76.3
Q ss_pred cCCCCHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHH
Q 023284 61 SDERSSRSFQLTKEAICL--------NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHR 124 (284)
Q Consensus 61 ~~~~s~~aL~~~~~~L~l--------nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR 124 (284)
..++.++|+.++.++|.+ +|.-.++.+..+.++..+| ++++|+.+++++|.+ +|.-..+.++.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ-AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 455667888888887764 2333466677777777777 577787777777763 23334456666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhC--------cCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCC
Q 023284 125 RWVAEKLGTGAVNKELQFTKKMLSLD--------AKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFN 187 (284)
Q Consensus 125 ~~ll~~l~~~~~~eel~~~~~aL~~d--------pkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n 187 (284)
+.++...|+ +++|+.++.+++++- |.-...-...+.+...++.+.+|...+.++.+..-.|
T Consensus 400 a~~~~~~G~--~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 400 GLTNWHAGH--IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCC--HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777777 777777777777642 2222333344444555566666666666665444333
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.08 E-value=0.02 Score=54.53 Aligned_cols=165 Identities=6% Similarity=-0.019 Sum_probs=114.9
Q ss_pred cChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------------------
Q 023284 44 YKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIE----------------------------- 94 (284)
Q Consensus 44 ~~p~~~~a~~~~r~~~~~~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~L~----------------------------- 94 (284)
..|.+..+|..+.......+..++|...+++++.. |.+...|..-....+
T Consensus 208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 45777888888877777777779999999999999 999888875544310
Q ss_pred -----------HhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHH
Q 023284 95 -----------TLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV 163 (284)
Q Consensus 95 -----------~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~v 163 (284)
..+ ..+.+-..++++ ...+..+++|.....+-..++.+ .+.+...++.+++..|++...|..-...
T Consensus 287 ~lw~~y~~~~~r~~-~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d-~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKR-GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS-RATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHH-CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 011 356677788888 43445788887776666666522 7899999999999999988877765666
Q ss_pred HHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHH
Q 023284 164 LQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVN 216 (284)
Q Consensus 164 l~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~ 216 (284)
...+|..+.+...++++ +.....|..-...-...|.....+.++++.++
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788888888888887 34455565444333444554333344444443
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.83 E-value=0.0036 Score=59.94 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=72.2
Q ss_pred HhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHh
Q 023284 95 TLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWS 158 (284)
Q Consensus 95 ~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~ 158 (284)
..| .+++|+..++++|.+ +|.-..+.++.+.++...|+ +++|+.++.++|++ +|.-..+.+
T Consensus 321 ~qg-~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 321 SEG-LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--YEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp TTT-CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hCC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345 589999999999875 33344667888999999999 99999999999975 455567788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 159 YRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 159 ~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
+.+.++...|++++|+..+.+++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.78 E-value=0.014 Score=45.54 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC-c-CChhHHhHHHHHHHHccCcHHHHHHHHHHHh
Q 023284 106 FVGRIAKSNSKNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLD-A-KNYHAWSYRQWVLQALGGWEDELDYCQMLLG 182 (284)
Q Consensus 106 ~~~~~l~~~pkn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~d-p-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~ 182 (284)
-+...+..++-+.++=+.-+|.|-+-.. ....+.+.++..++..+ | .+-.+-++.+....++|+|++|+.+++..|+
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566677888888888888876543 11345888999988887 6 7888999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHH
Q 023284 183 EDIFNNSAWNQRYFVV 198 (284)
Q Consensus 183 ~dp~n~sAW~~r~~ll 198 (284)
++|.|..|..-+..+-
T Consensus 103 ~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 103 TEPQNNQAKELERLID 118 (126)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHH
Confidence 9999999887665553
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.0039 Score=58.79 Aligned_cols=83 Identities=8% Similarity=0.037 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHH
Q 023284 99 DLQDELAFVGRIAKS-----NSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQW 162 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~-----~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~ 162 (284)
++++++..++++|.+ .|.++ .+.++.+.++..+|+ +++|+.++.++|++ +|.-....++.|.
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 478888888888874 34443 456677777888888 88888888888864 5555567788888
Q ss_pred HHHHccCcHHHHHHHHHHHhc
Q 023284 163 VLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 163 vl~~l~~~~eeL~~~~~~l~~ 183 (284)
++...|++++|+..+.+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 888888888888888888775
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0072 Score=56.93 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=72.4
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHh--------CCCChHHHHHHH
Q 023284 62 DERSSRSFQLTKEAICL-----NPGN---YTVWHFRRQIIETLHTDLQDELAFVGRIAKS--------NSKNYQLWHHRR 125 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~l-----nP~~---~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~--------~pkn~~aW~hR~ 125 (284)
.+..++|+.+++++|.+ -|+| ..+.+..+.++..+| ++++|+.+++++|.+ +|.-...+++.+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g-~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ-DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34568999999999984 4444 477888899999999 699999999999975 455566788899
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCc
Q 023284 126 WVAEKLGTGAVNKELQFTKKMLSLDA 151 (284)
Q Consensus 126 ~ll~~l~~~~~~eel~~~~~aL~~dp 151 (284)
.++...|+ +++|+.++.+|+++--
T Consensus 390 ~~~~~qg~--~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 390 RLYMGLEN--KAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHhccC--HHHHHHHHHHHHHHHH
Confidence 99999999 9999999999998743
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.088 Score=41.00 Aligned_cols=96 Identities=8% Similarity=0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023284 69 FQLTKEAICLNPGNYTVWHFRRQIIETLH--TDLQDELAFVGRIAKSN-S-KNYQLWHHRRWVAEKLGTGAVNKELQFTK 144 (284)
Q Consensus 69 L~~~~~~L~lnP~~~~aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~-p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~ 144 (284)
-+.+...+..++....+=+.-+|+|.+-. .+..+.+.+++.++..+ | ..-..-++.+....++|+ |.+++.+++
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~--Y~~A~~~~~ 98 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence 34455556666777777777777776533 13456888888888877 5 566777788888888888 999999999
Q ss_pred HHHHhCcCChhHHhHHHHHHHH
Q 023284 145 KMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 145 ~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
.+|+++|.|..|..-+..+-.+
T Consensus 99 ~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999998888777665443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.76 E-value=0.025 Score=53.04 Aligned_cols=84 Identities=11% Similarity=0.047 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CcCChhHHhHHHH
Q 023284 99 DLQDELAFVGRIAKS-----NSKNY---QLWHHRRWVAEKLGTGAVNKELQFTKKMLSL--------DAKNYHAWSYRQW 162 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~-----~pkn~---~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~--------dpkN~~AW~~r~~ 162 (284)
.+++++..++++|.+ .|.++ .+.++.+.++...|+ +++|+.++.++|++ +|.-...+++.+.
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 366666666666653 23333 445556666667777 77777777777753 4455567778888
Q ss_pred HHHHccCcHHHHHHHHHHHhcc
Q 023284 163 VLQALGGWEDELDYCQMLLGED 184 (284)
Q Consensus 163 vl~~l~~~~eeL~~~~~~l~~d 184 (284)
++...|++++|+..+.+++++-
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 8888888888888888888763
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.70 E-value=0.065 Score=50.17 Aligned_cols=97 Identities=9% Similarity=-0.037 Sum_probs=79.3
Q ss_pred HhCCCCHHHHHHHHHHHHHh-----CcCC---hhHHhHHHHHHHHccCcHHHHHHHHHHHhc--------cCCChHHHHH
Q 023284 130 KLGTGAVNKELQFTKKMLSL-----DAKN---YHAWSYRQWVLQALGGWEDELDYCQMLLGE--------DIFNNSAWNQ 193 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~-----dpkN---~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~--------dp~n~sAW~~ 193 (284)
..|+ ++++++.+.++|++ .|.| ....++.+.++...|+|++|+.++.++|++ +|.=...+++
T Consensus 299 ~~g~--~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 299 AHWK--WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HTTC--HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhcc--HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4566 99999999999974 3444 467888899999999999999999999976 4445567889
Q ss_pred HHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 194 RYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 194 r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
.|.++...|++.++..+++++++..... .-|+++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~--lG~~Hp~ 411 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVT--HGREHSL 411 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh--cCCCChH
Confidence 9999999999988888889999887766 5666654
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.59 E-value=0.23 Score=39.44 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHH
Q 023284 116 KNYQLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQ 193 (284)
Q Consensus 116 kn~~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~ 193 (284)
-+.++=+.-.|.|-+-.. ....+.+.+++..+..+| ..-.+-++.+....++|+|++|+.+++.+|+++|+|..|-.-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344444444555544432 113456666667666666 455667777777778888888888888888888888777665
Q ss_pred HHHHH
Q 023284 194 RYFVV 198 (284)
Q Consensus 194 r~~ll 198 (284)
+..+-
T Consensus 117 k~~Ie 121 (144)
T 1y8m_A 117 KSMVE 121 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 224
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.52 E-value=0.12 Score=40.66 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHH
Q 023284 119 QLWHHRRWVAEKLGT-GAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYF 196 (284)
Q Consensus 119 ~aW~hR~~ll~~l~~-~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ 196 (284)
++=+.-.|.|-+-.. ....+.+.+++..++.+| ..-.++++.+....++|+|++|+.+++.+|+++|+|..|-.-+..
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 444444555554432 114456777777777777 446777777777788888888888888888888888777665554
Q ss_pred H
Q 023284 197 V 197 (284)
Q Consensus 197 l 197 (284)
+
T Consensus 121 I 121 (134)
T 3o48_A 121 V 121 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.19 E-value=0.41 Score=37.56 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHH
Q 023284 99 DLQDELAFVGRIAKSNS-KNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQA 166 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~ 166 (284)
+..+.+.+++.++..+| ..-..+++.+.-..++|+ +.+|+.+++.+|+++|.|-.|-.-+..+-.+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd--Y~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--YSMAKRYVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 35567777777777777 346667777777777777 7777777777777777777776665554433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.99 E-value=0.4 Score=38.61 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=24.2
Q ss_pred eeecChhHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCC
Q 023284 41 PIAYKPEFSETMSYFRAVYYSDERS------SRSFQLTKEAICLNPG 81 (284)
Q Consensus 41 ~I~~~p~~~~a~~~~r~~~~~~~~s------~~aL~~~~~~L~lnP~ 81 (284)
.|.++|..++.|..|-.++.+.+.. ++.++.|++|+..-|-
T Consensus 5 ~~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp 51 (161)
T 4h7y_A 5 SIMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP 51 (161)
T ss_dssp -----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred ceeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence 4567777777776666666654545 6677777777766654
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.84 E-value=1.1 Score=35.48 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhh--hCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHH
Q 023284 85 VWHFRRQIIETLH--TDLQDELAFVGRIAKSNSK-NYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQ 161 (284)
Q Consensus 85 aW~~R~~~L~~l~--~~~~~eL~~~~~~l~~~pk-n~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~ 161 (284)
+=+.-.|+|..-. .+.++.+.+++.++..+|. .-..-++...-..++|+ |.+++.+++.+|+++|.|-.|-.-+.
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~--Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--YSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3333344444322 2345677777777777663 44455555555566677 77777777777777777777766555
Q ss_pred HHHH
Q 023284 162 WVLQ 165 (284)
Q Consensus 162 ~vl~ 165 (284)
.+-.
T Consensus 119 ~Ie~ 122 (144)
T 1y8m_A 119 MVED 122 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.68 E-value=8.2 Score=36.42 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023284 66 SRSFQLTKEAICLNPG-NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN-SKNYQLWHHRRWVAEKLGTGAVNKELQFT 143 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~-~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~-pkn~~aW~hR~~ll~~l~~~~~~eel~~~ 143 (284)
++|+++++.+....-. +...|+..-..+-..| ++++|+++++.+.... .-+...|+.--..+-+.|+ .+++++++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~--~~~A~~l~ 163 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD--ADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC--HHHHHHHH
Confidence 5788899888765322 4555666656666667 5999999999988753 3367778777777778888 99999999
Q ss_pred HHHHHhCcC-ChhHHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 144 KKMLSLDAK-NYHAWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 144 ~~aL~~dpk-N~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
+.+.+..-. |...|+-...++.+.|+.++|++.++++-+.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 999986533 6677888888889999999999999988764
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.66 E-value=9.1 Score=36.12 Aligned_cols=167 Identities=7% Similarity=0.045 Sum_probs=115.7
Q ss_pred hcCCCCHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhh--------hCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 023284 60 YSDERSSRSFQLTKEAICL--NPGNYTVWHFRRQIIETLH--------TDLQDELAFVGRIAKSNS-KNYQLWHHRRWVA 128 (284)
Q Consensus 60 ~~~~~s~~aL~~~~~~L~l--nP~~~~aW~~R~~~L~~l~--------~~~~~eL~~~~~~l~~~p-kn~~aW~hR~~ll 128 (284)
.+.+..++|+++++.+... .|+. ..|+..-.++...+ ..++++++.++.+....- -|..+|+.--..+
T Consensus 37 ~k~G~~~~A~~lf~~M~~~Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRNGVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4566779999999998875 3443 33433222221111 126789999998876543 3777888877778
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCc-CChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC-ChHHHHHHHHHHhcCCCCch
Q 023284 129 EKLGTGAVNKELQFTKKMLSLDA-KNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF-NNSAWNQRYFVVTRSPLLGG 206 (284)
Q Consensus 129 ~~l~~~~~~eel~~~~~aL~~dp-kN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~-n~sAW~~r~~ll~~l~~~~~ 206 (284)
-+.|+ +++|+.+++.+.+..- -|...|+-....+.+.|++++|++.++++.+.... |...|+..-..+.+.|+.
T Consensus 116 ~~~g~--~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~-- 191 (501)
T 4g26_A 116 VAKDD--PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA-- 191 (501)
T ss_dssp HHHTC--HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH--
T ss_pred HhcCC--HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH--
Confidence 88898 9999999999988643 37788888888888999999999999999987654 556676665566666764
Q ss_pred hhhhHHHHHHHHHHHH--hcCCCCccHHHHHHH
Q 023284 207 LIAMRDSEVNFTIEAI--LGNPENESPWRYLRG 237 (284)
Q Consensus 207 ~~~~~~~el~~~~~~i--~~~P~nesaW~y~~~ 237 (284)
+++++.+++.- ...|+ ++.++-+..
T Consensus 192 -----d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 192 -----DKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp -----HHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 55666665543 35565 445544443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.45 E-value=3 Score=33.50 Aligned_cols=114 Identities=7% Similarity=-0.039 Sum_probs=78.2
Q ss_pred HHhCCCcHHHHHHHHHHHHHhhhC-----HHHHHHHHHHHHHhCCCChHHHHHHHHH--------HHHhCCCCHHHHHHH
Q 023284 76 ICLNPGNYTVWHFRRQIIETLHTD-----LQDELAFVGRIAKSNSKNYQLWHHRRWV--------AEKLGTGAVNKELQF 142 (284)
Q Consensus 76 L~lnP~~~~aW~~R~~~L~~l~~~-----~~~eL~~~~~~l~~~pkn~~aW~hR~~l--------l~~l~~~~~~eel~~ 142 (284)
|.+.|.+|..|..--..++.-|.. +++-++.|++++..-|-.-. =..|+.+ +..+++ .+++-+.
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-~~wrrYI~LWIrYA~~~ei~D--~d~aR~v 82 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-GQNESFARIQVRFAELKAIQE--PDDARDY 82 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-TTCHHHHHHHHHHHHHHHHHC--GGGCHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-ccHHHHHHHHHHHHHHHHhcC--HHHHHHH
Confidence 457899999999888888777743 37778899999987765421 1112222 134455 7788899
Q ss_pred HHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHH
Q 023284 143 TKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWN 192 (284)
Q Consensus 143 ~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~ 192 (284)
|..+++.+.+....|...+-.=-+-|....|.....++|.+.|.......
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 99999986666555655555555567889999999999999998766543
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.40 E-value=2.5 Score=42.42 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHhhhCHHHHHHHHHHHHH--------hCCCChHH---HHHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLNPGNYTVWHFRRQI--IETLHTDLQDELAFVGRIAK--------SNSKNYQL---WHHRRWVA 128 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~lnP~~~~aW~~R~~~--L~~l~~~~~~eL~~~~~~l~--------~~pkn~~a---W~hR~~ll 128 (284)
+.+.+.|+++++++....|....... +..+ +..++..--+++......+. ..++.... ......+|
T Consensus 262 ~~~~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 262 PSLVDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 34457899999999999998754322 2111 11112111234444444442 23333321 12222222
Q ss_pred -------HHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHH
Q 023284 129 -------EKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 129 -------~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
..-|+ ++-||.+-.+++..-|..+.+|....-++-.+|+|+.||-..+
T Consensus 341 ~~Qa~FLl~K~~--~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 341 NIQTNFLLNRGD--YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCc--HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 23355 9999999999999999999999999999999999999985544
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.30 E-value=6 Score=37.63 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhc
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTR 200 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~ 200 (284)
+..+..+|.+|+.+.|.+-.++++.|.+...-++.-+++-+|-+++....-...|+.+...++.+
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 67788888888888888888888888888887777788888888888777777888777776654
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.27 E-value=14 Score=37.10 Aligned_cols=104 Identities=9% Similarity=0.041 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH--------hCcCChh----------HHh
Q 023284 99 DLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGT--GAVNKELQFTKKMLS--------LDAKNYH----------AWS 158 (284)
Q Consensus 99 ~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~--~~~~eel~~~~~aL~--------~dpkN~~----------AW~ 158 (284)
.++.++++++++...+|.+.. .....++..+.. ..-.+++.....+++ ..+++.. ..+
T Consensus 264 ~~~~a~~~le~L~~~~p~~~~--~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~ 341 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIHDI--YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN 341 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCchhH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence 367899999999999997743 333333332211 012334455555553 1233322 122
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCC
Q 023284 159 YRQWVLQALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLL 204 (284)
Q Consensus 159 ~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~ 204 (284)
-..-.+..-++++-||++..+++..-|.....|.....+.-.++.+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence 2223333458899999999999999999999999999999888875
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.40 E-value=19 Score=34.15 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHHHHhh------hCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHH
Q 023284 91 QIIETLH------TDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL 164 (284)
Q Consensus 91 ~~L~~l~------~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl 164 (284)
++|..|| ..+..+..+|.+|+.++|.+-.+++|-+.+...-|+ .-+++-+|-++|....-...|+.+...++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~--~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD--HLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC--HHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc--cHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3566666 246789999999999999999999999999998887 77888888888877766777887777776
Q ss_pred HH
Q 023284 165 QA 166 (284)
Q Consensus 165 ~~ 166 (284)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.54 E-value=8.6 Score=34.98 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=44.9
Q ss_pred HHccCcHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCCchhhhhHHHHHHHHHHHHhcCCCCcc
Q 023284 165 QALGGWEDELDYCQMLLGEDIFNNSAWNQRYFVVTRSPLLGGLIAMRDSEVNFTIEAILGNPENES 230 (284)
Q Consensus 165 ~~l~~~~eeL~~~~~~l~~dp~n~sAW~~r~~ll~~l~~~~~~~~~~~~el~~~~~~i~~~P~nes 230 (284)
...|++++++..+.+++..||-+..+|...-.++...|+..++...|+.--..+.+-+-+.|+-+-
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 356788899999999999999999999888888888887543333333222333333456776543
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.09 E-value=24 Score=31.90 Aligned_cols=57 Identities=7% Similarity=-0.023 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023284 87 HFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM 146 (284)
Q Consensus 87 ~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a 146 (284)
..+......+| ++.+++..+..++..+|-+-.+|.....++...|+ ..+|+..|.++
T Consensus 175 ~~~~~~~l~~g-~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr--~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACG-RASAVIAELEALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 33444555556 46677777777777777777777666666666666 66666666655
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.13 E-value=36 Score=29.60 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHHHHhccCCChHHH-HHHHHH
Q 023284 136 VNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQMLLGEDIFNNSAW-NQRYFV 197 (284)
Q Consensus 136 ~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~n~sAW-~~r~~l 197 (284)
+.++++.+...++.+|.|...=....-++.-.|+|+.|+.-.+-+.+++|.....- .||..|
T Consensus 13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 13 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 88888888888888888887665556666667888888888888888888877544 555443
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.95 E-value=95 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 023284 79 NPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK 112 (284)
Q Consensus 79 nP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~ 112 (284)
+-+-.|+-+++..|+..+. ++..|+.+++++|.
T Consensus 58 ~lNT~Ts~YYk~LCy~klK-dYkkA~~~le~il~ 90 (242)
T 3kae_A 58 KLNTCTSKYYESLCYKKKK-DYKKAIKSLESILE 90 (242)
T ss_dssp TCCBHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 4456788888888888887 68888888888883
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.82 E-value=68 Score=27.87 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhCCCChHHH-HHHHHHH
Q 023284 66 SRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAKSNSKNYQLW-HHRRWVA 128 (284)
Q Consensus 66 ~~aL~~~~~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW-~hR~~ll 128 (284)
+++++.+...|+.+|.|...=...-++|=-.| +++.|++-++.+.+++|.....= .||..|.
T Consensus 14 ~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G-~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 14 QQALELLIEAIKASPKDASLRSSFIELLCIDG-DFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 56777777777777777765544444444445 57777777777777777665443 4444443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.73 E-value=1.2e+02 Score=31.49 Aligned_cols=102 Identities=8% Similarity=-0.098 Sum_probs=69.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH---h-----------------CCC---ChHHHHHHHHHHHH
Q 023284 74 EAICLNPGNYTVWHFRRQIIETLHTDLQDELAFVGRIAK---S-----------------NSK---NYQLWHHRRWVAEK 130 (284)
Q Consensus 74 ~~L~lnP~~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~---~-----------------~pk---n~~aW~hR~~ll~~ 130 (284)
..+...|.+...=+.+|+++...| ++++|..+|.++.. . .+. -..-+.|-..++.+
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~g-e~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSK-EAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred HHhhhccCCcHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence 355667888777789999999999 69999999987632 1 111 11334455556667
Q ss_pred hCCCCHHHHHHHHHHHHHhCcCChh-----HHhHHHHHHHHccCcHHHHHHHH
Q 023284 131 LGTGAVNKELQFTKKMLSLDAKNYH-----AWSYRQWVLQALGGWEDELDYCQ 178 (284)
Q Consensus 131 l~~~~~~eel~~~~~aL~~dpkN~~-----AW~~r~~vl~~l~~~~eeL~~~~ 178 (284)
.+. ++.++++...||+.-+.+-. -|+..-...-.+++|++|....-
T Consensus 912 ~~~--~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 912 ESA--YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp TSC--CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cCC--HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 776 89999999999986544332 45555455567788988866554
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=42.53 E-value=40 Score=27.10 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCChh---------HHhHHHHHHHHccCcHHHHHHHHHHHhc
Q 023284 121 WHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYH---------AWSYRQWVLQALGGWEDELDYCQMLLGE 183 (284)
Q Consensus 121 W~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN~~---------AW~~r~~vl~~l~~~~eeL~~~~~~l~~ 183 (284)
|..+.++-.-+..+.++.+.-..+.++.+...|.. +..+.+.++..-+.|..|...|.++|..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44444443333333488888777777766544433 6777788888888888888888887654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.06 E-value=1.5e+02 Score=23.63 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Q 023284 62 DERSSRSFQLTKEAICLN---PG------NYTVWHFRRQIIETLHTDLQDELAFVGRIAKSN---SKNYQLWHHRRWVAE 129 (284)
Q Consensus 62 ~~~s~~aL~~~~~~L~ln---P~------~~~aW~~R~~~L~~l~~~~~~eL~~~~~~l~~~---pkn~~aW~hR~~ll~ 129 (284)
.+.++.|.-+.+.++.+. |+ .+++..+.+..+..-+ .+..|+..|.++|... +|+..+ |- .+.
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~-eyrrA~~~y~qALq~~k~l~k~~s~---~~-~~~ 107 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK-EYRNAVSKYTMALQQKKALSKTSKV---RP-STG 107 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHCC---------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHhcCCCc---cc-ccc
Confidence 455577877777766543 43 2567888888888877 6999999999887522 222211 00 000
Q ss_pred HhCCCCHHHHHHHHHHHHHhCcCChhHHhHHHHHHHHccCcHHHHHHHHH
Q 023284 130 KLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWEDELDYCQM 179 (284)
Q Consensus 130 ~l~~~~~~eel~~~~~aL~~dpkN~~AW~~r~~vl~~l~~~~eeL~~~~~ 179 (284)
.-.. .... ... +..++.=+..+-++..++++.+|+...+.
T Consensus 108 ~~ss--~p~s-------~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 108 NSAS--TPQS-------QCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccCC--Cccc-------ccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 0000 0000 011 23344555567788888888888876553
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.46 E-value=1.7e+02 Score=24.01 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=44.7
Q ss_pred hhHHhHHHHHHHHccCcHHHHHHHHHHHhc-----------------cCCChHHHHHH-HHHHhcCCCCchhhhhHHHHH
Q 023284 154 YHAWSYRQWVLQALGGWEDELDYCQMLLGE-----------------DIFNNSAWNQR-YFVVTRSPLLGGLIAMRDSEV 215 (284)
Q Consensus 154 ~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~-----------------dp~n~sAW~~r-~~ll~~l~~~~~~~~~~~~el 215 (284)
..+-+|+..++.+++++..|+.+.++.|+- ||.+..-+... +.++.+++. .+++|
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~-------r~EaI 134 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY-------REEGI 134 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC-------HHHhh
Confidence 456677778888888888888888877732 35555544333 556666665 37778
Q ss_pred HHHHHHHhcCCCC
Q 023284 216 NFTIEAILGNPEN 228 (284)
Q Consensus 216 ~~~~~~i~~~P~n 228 (284)
.++......+|--
T Consensus 135 ~y~~~Sf~~~~lf 147 (242)
T 3kae_A 135 GHYVRSFGKSFLF 147 (242)
T ss_dssp HHHHHHHHHCCCH
T ss_pred hHhhhhcCCcccc
Confidence 8777776666653
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.89 E-value=4.5e+02 Score=25.26 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=10.3
Q ss_pred HHHHHHccCcHHHHHHHHHHH
Q 023284 161 QWVLQALGGWEDELDYCQMLL 181 (284)
Q Consensus 161 ~~vl~~l~~~~eeL~~~~~~l 181 (284)
+-++..+|+-+++...+.++.
T Consensus 326 ~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 326 ADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 334444555555555555544
No 245
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.11 E-value=1.2e+02 Score=28.95 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHhcCCCCHHHHHHHHHHH-----------HhCCCcHHHHHHHHHHHHHhhhCHH-------------HHHHHHHHHHHh
Q 023284 58 VYYSDERSSRSFQLTKEAI-----------CLNPGNYTVWHFRRQIIETLHTDLQ-------------DELAFVGRIAKS 113 (284)
Q Consensus 58 ~~~~~~~s~~aL~~~~~~L-----------~lnP~~~~aW~~R~~~L~~l~~~~~-------------~eL~~~~~~l~~ 113 (284)
.+...+..++|.++...++ .+++=..-+|+|-..+-..+|...+ .-+..+..+...
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCC-------hhHHhHHHHHHHHccCcHHHHHHHHHHHhccCC
Q 023284 114 NSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKN-------YHAWSYRQWVLQALGGWEDELDYCQMLLGEDIF 186 (284)
Q Consensus 114 ~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~~dpkN-------~~AW~~r~~vl~~l~~~~eeL~~~~~~l~~dp~ 186 (284)
+-...++=.+-..+-.-+..+.++.|..+++++. .|.+ ..-.+|.|-+..-.++|.+|.+++..++..-|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q ss_pred ChHHHHHHHHHHh
Q 023284 187 NNSAWNQRYFVVT 199 (284)
Q Consensus 187 n~sAW~~r~~ll~ 199 (284)
+..+-..|..+++
T Consensus 303 ~~~a~gfr~~a~K 315 (523)
T 4b4t_S 303 NSKSLGFLQQSNK 315 (523)
T ss_dssp SSSCSHHHHHHHH
T ss_pred chhhhhHHHHHHH
No 246
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.59 E-value=1.2e+02 Score=21.11 Aligned_cols=19 Identities=0% Similarity=-0.017 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 023284 211 RDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 211 ~~~el~~~~~~i~~~P~ne 229 (284)
|.++++.+..++...|+..
T Consensus 42 Y~~aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHHHHHHCCCHH
Confidence 4555666666665555433
No 247
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.04 E-value=1.4e+02 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhcCCCCc
Q 023284 210 MRDSEVNFTIEAILGNPENE 229 (284)
Q Consensus 210 ~~~~el~~~~~~i~~~P~ne 229 (284)
+|.++++++..++...|+..
T Consensus 33 lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 33 YYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHHCCCHH
Confidence 34556666666666555444
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.40 E-value=4.6e+02 Score=27.06 Aligned_cols=96 Identities=6% Similarity=-0.077 Sum_probs=63.9
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------hCcCC---hhHHhHHHHHHH
Q 023284 109 RIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLS--------------------LDAKN---YHAWSYRQWVLQ 165 (284)
Q Consensus 109 ~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~aL~--------------------~dpkN---~~AW~~r~~vl~ 165 (284)
..+..-|.+...=+-+|.++...|+ +++|..++.++-. ..+.+ .+-+.|-.-++.
T Consensus 833 ~l~~~~~~~~~~~yl~g~~~L~~ge--~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe 910 (1139)
T 4fhn_B 833 QLIGWLNSDPIAVYLKALIYLKSKE--AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 910 (1139)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHH
T ss_pred HHhhhccCCcHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHH
Confidence 3455667777776778888889999 9999999877631 11111 133455566778
Q ss_pred HccCcHHHHHHHHHHHhccCCChH-----HHHHHHHHHhcCCCCch
Q 023284 166 ALGGWEDELDYCQMLLGEDIFNNS-----AWNQRYFVVTRSPLLGG 206 (284)
Q Consensus 166 ~l~~~~eeL~~~~~~l~~dp~n~s-----AW~~r~~ll~~l~~~~~ 206 (284)
+.+.++.++++...||+.-+.+.. .|.......-.++++++
T Consensus 911 ~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 911 EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 888999999999999987643322 35544444445666643
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=21.42 E-value=5.2e+02 Score=24.40 Aligned_cols=78 Identities=6% Similarity=-0.011 Sum_probs=44.6
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHhCcCChhHHhHHH
Q 023284 90 RQIIETLHTDLQDELAFVGRIAKSNSKNYQLWHHRRWVAEKLGTGAVNKELQFTKKM--------LSLDAKNYHAWSYRQ 161 (284)
Q Consensus 90 ~~~L~~l~~~~~~eL~~~~~~l~~~pkn~~aW~hR~~ll~~l~~~~~~eel~~~~~a--------L~~dpkN~~AW~~r~ 161 (284)
-.+...+| ++++|+++. ...++...|..-+....+.++ ++.|..+|.++ |..-..|...+...+
T Consensus 659 f~~~l~~~-~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~--~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 659 FELALKVG-QLTLARDLL-----TDESAEMKWRALGDASLQRFN--FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHHHHT-CHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred eehhhhcC-CHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCC--HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHH
Confidence 33444455 476776653 344667788777777777777 77777776653 222344555555555
Q ss_pred HHHHHccCcHHHHH
Q 023284 162 WVLQALGGWEDELD 175 (284)
Q Consensus 162 ~vl~~l~~~~eeL~ 175 (284)
-+....|+++.|..
T Consensus 731 ~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 731 KDAETTGKFNLAFN 744 (814)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCchHHHHH
Confidence 45444555444443
Done!