Query 023286
Match_columns 284
No_of_seqs 391 out of 2205
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1995 Conserved Zn-finger pr 99.9 1.2E-26 2.7E-31 211.6 13.0 203 3-263 64-270 (351)
2 PLN03134 glycine-rich RNA-bind 99.8 4.1E-19 8.8E-24 147.3 14.8 84 4-95 33-116 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 7.6E-16 1.6E-20 144.7 14.5 84 4-95 192-277 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.1E-15 2.5E-20 143.0 12.1 82 6-95 270-351 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2E-15 4.4E-20 141.3 11.1 83 4-94 2-84 (352)
6 TIGR01659 sex-lethal sex-letha 99.6 2.3E-15 5E-20 141.4 10.6 82 4-93 106-187 (346)
7 PF00076 RRM_1: RNA recognitio 99.6 6.9E-15 1.5E-19 105.2 9.5 70 8-86 1-70 (70)
8 KOG4198 RNA-binding Ran Zn-fin 99.6 1.7E-15 3.7E-20 136.3 6.8 101 140-243 56-168 (280)
9 KOG0122 Translation initiation 99.6 4.6E-15 9.9E-20 129.7 9.3 82 4-93 188-269 (270)
10 KOG0107 Alternative splicing f 99.6 2E-14 4.3E-19 120.1 11.7 78 5-95 10-87 (195)
11 PF14259 RRM_6: RNA recognitio 99.5 8.4E-14 1.8E-18 100.4 9.2 70 8-86 1-70 (70)
12 KOG0113 U1 small nuclear ribon 99.5 8.4E-14 1.8E-18 124.8 10.9 84 5-96 101-184 (335)
13 KOG0149 Predicted RNA-binding 99.5 2.8E-14 6.1E-19 124.3 7.4 78 6-92 13-90 (247)
14 KOG4207 Predicted splicing fac 99.5 5.9E-14 1.3E-18 120.1 8.7 81 6-94 14-94 (256)
15 KOG0105 Alternative splicing f 99.5 2E-13 4.4E-18 115.1 9.6 80 3-93 4-83 (241)
16 KOG0121 Nuclear cap-binding pr 99.5 9.9E-14 2.1E-18 110.6 7.1 81 4-92 35-115 (153)
17 KOG0111 Cyclophilin-type pepti 99.5 4.4E-14 9.5E-19 122.0 4.7 87 1-95 6-92 (298)
18 TIGR01648 hnRNP-R-Q heterogene 99.5 9.5E-13 2.1E-17 130.5 14.5 76 5-96 233-310 (578)
19 PLN03213 repressor of silencin 99.5 2.6E-13 5.5E-18 128.7 9.4 76 5-92 10-87 (759)
20 PLN03120 nucleic acid binding 99.5 4.7E-13 1E-17 119.8 10.6 77 4-92 3-79 (260)
21 TIGR01645 half-pint poly-U bin 99.4 4.1E-13 8.8E-18 133.5 11.2 83 5-95 204-286 (612)
22 TIGR01645 half-pint poly-U bin 99.4 4.7E-13 1E-17 133.0 10.8 80 4-91 106-185 (612)
23 TIGR01622 SF-CC1 splicing fact 99.4 6.4E-13 1.4E-17 128.8 11.2 80 5-92 186-265 (457)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.4 8.2E-13 1.8E-17 129.7 11.8 82 5-94 295-376 (509)
25 KOG0126 Predicted RNA-binding 99.4 2.2E-14 4.7E-19 120.6 0.2 80 4-91 34-113 (219)
26 smart00362 RRM_2 RNA recogniti 99.4 1.3E-12 2.9E-17 92.2 9.2 72 7-88 1-72 (72)
27 TIGR01628 PABP-1234 polyadenyl 99.4 7.2E-13 1.6E-17 132.0 10.8 79 6-92 1-79 (562)
28 KOG0125 Ataxin 2-binding prote 99.4 4.8E-13 1E-17 121.4 8.1 80 5-94 96-175 (376)
29 KOG0130 RNA-binding protein RB 99.4 7E-13 1.5E-17 106.7 7.5 83 5-95 72-154 (170)
30 TIGR01622 SF-CC1 splicing fact 99.4 1.3E-12 2.9E-17 126.6 10.8 81 4-93 88-168 (457)
31 PLN03121 nucleic acid binding 99.4 1.8E-12 4E-17 114.4 10.6 80 1-92 1-80 (243)
32 TIGR01628 PABP-1234 polyadenyl 99.4 1.7E-12 3.8E-17 129.3 11.1 84 3-95 283-366 (562)
33 smart00360 RRM RNA recognition 99.4 2.6E-12 5.6E-17 90.3 8.8 71 10-88 1-71 (71)
34 KOG0145 RNA-binding protein EL 99.4 1.3E-12 2.9E-17 115.4 8.2 84 5-96 41-124 (360)
35 COG0724 RNA-binding proteins ( 99.4 2.6E-12 5.7E-17 112.6 10.2 80 5-92 115-194 (306)
36 KOG0117 Heterogeneous nuclear 99.4 2.5E-12 5.4E-17 120.8 9.4 79 5-91 83-162 (506)
37 TIGR01648 hnRNP-R-Q heterogene 99.4 2.4E-12 5.3E-17 127.6 9.8 76 5-89 58-134 (578)
38 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.7E-16 87.6 9.8 74 7-89 1-74 (74)
39 KOG0117 Heterogeneous nuclear 99.3 1.2E-11 2.5E-16 116.3 10.9 81 3-99 257-337 (506)
40 KOG0108 mRNA cleavage and poly 99.3 5.2E-12 1.1E-16 121.1 8.8 82 6-95 19-100 (435)
41 KOG0148 Apoptosis-promoting RN 99.3 8.8E-12 1.9E-16 110.7 9.3 80 2-95 161-240 (321)
42 KOG0131 Splicing factor 3b, su 99.3 3.5E-12 7.5E-17 107.4 6.0 81 4-92 8-88 (203)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.7E-11 3.6E-16 120.3 11.2 79 3-94 273-352 (481)
44 KOG1548 Transcription elongati 99.3 1.1E-11 2.4E-16 113.3 9.0 93 4-97 133-225 (382)
45 KOG0148 Apoptosis-promoting RN 99.3 1.3E-11 2.8E-16 109.6 7.3 81 6-94 63-143 (321)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 4.1E-11 8.9E-16 117.5 10.5 77 4-94 1-79 (481)
47 KOG0146 RNA-binding protein ET 99.2 1.5E-11 3.4E-16 109.0 5.6 86 3-96 283-368 (371)
48 KOG0144 RNA-binding protein CU 99.2 1.6E-11 3.5E-16 115.0 5.9 86 3-97 122-210 (510)
49 KOG0114 Predicted RNA-binding 99.2 8.4E-11 1.8E-15 90.7 8.4 78 5-93 18-95 (124)
50 KOG0144 RNA-binding protein CU 99.2 3.1E-11 6.8E-16 113.0 7.2 84 5-96 34-120 (510)
51 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.4E-15 84.7 7.9 62 19-88 2-70 (70)
52 KOG4212 RNA-binding protein hn 99.2 3.3E-10 7.1E-15 106.4 11.9 82 5-95 44-126 (608)
53 KOG0145 RNA-binding protein EL 99.1 2.1E-10 4.5E-15 101.6 9.1 80 6-93 279-358 (360)
54 KOG0127 Nucleolar protein fibr 99.1 1.6E-10 3.4E-15 111.1 8.7 83 4-95 116-198 (678)
55 KOG0415 Predicted peptidyl pro 99.1 1E-10 2.3E-15 107.3 7.0 87 1-95 235-321 (479)
56 KOG0127 Nucleolar protein fibr 99.1 2.2E-10 4.8E-15 110.1 9.4 82 5-94 292-379 (678)
57 KOG0116 RasGAP SH3 binding pro 99.1 7.5E-10 1.6E-14 105.8 12.5 82 6-96 289-370 (419)
58 PF13893 RRM_5: RNA recognitio 99.1 4.2E-10 9.1E-15 77.8 7.9 56 22-90 1-56 (56)
59 KOG0124 Polypyrimidine tract-b 99.1 6.3E-11 1.4E-15 109.1 4.3 76 6-89 114-189 (544)
60 KOG0147 Transcriptional coacti 99.1 1.2E-10 2.5E-15 112.1 6.3 81 7-95 280-360 (549)
61 KOG4198 RNA-binding Ran Zn-fin 99.1 1.2E-10 2.7E-15 105.1 5.2 98 143-242 135-270 (280)
62 KOG0131 Splicing factor 3b, su 99.1 3.1E-10 6.7E-15 95.7 6.5 84 5-95 96-179 (203)
63 KOG0109 RNA-binding protein LA 99.0 4.5E-10 9.7E-15 100.8 6.3 74 6-95 3-76 (346)
64 TIGR01642 U2AF_lg U2 snRNP aux 99.0 5.8E-10 1.3E-14 109.5 7.0 84 2-90 172-257 (509)
65 KOG4208 Nucleolar RNA-binding 99.0 1.3E-09 2.8E-14 93.7 7.8 81 5-93 49-130 (214)
66 KOG4206 Spliceosomal protein s 98.9 2.5E-09 5.5E-14 93.0 7.9 82 3-95 7-92 (221)
67 KOG4205 RNA-binding protein mu 98.9 3.7E-09 8.1E-14 97.6 6.9 86 5-99 97-182 (311)
68 KOG0123 Polyadenylate-binding 98.8 9.9E-09 2.1E-13 97.4 8.4 80 5-95 76-155 (369)
69 KOG4205 RNA-binding protein mu 98.8 3.6E-09 7.8E-14 97.7 4.9 84 4-96 5-88 (311)
70 KOG0110 RNA-binding protein (R 98.7 7.8E-09 1.7E-13 102.2 4.4 81 6-94 614-694 (725)
71 KOG0533 RRM motif-containing p 98.7 4.8E-08 1E-12 87.2 8.5 82 5-95 83-164 (243)
72 KOG0109 RNA-binding protein LA 98.7 2.2E-08 4.7E-13 90.1 6.1 78 4-97 77-154 (346)
73 PF04059 RRM_2: RNA recognitio 98.7 8.2E-08 1.8E-12 74.2 8.5 83 6-94 2-88 (97)
74 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.4E-08 7.3E-13 95.6 7.7 83 5-95 405-487 (940)
75 KOG4212 RNA-binding protein hn 98.7 2.8E-08 6.1E-13 93.6 7.0 76 2-90 533-608 (608)
76 PF00641 zf-RanBP: Zn-finger i 98.7 7.8E-09 1.7E-13 62.8 2.1 30 212-241 1-30 (30)
77 KOG0132 RNA polymerase II C-te 98.7 3E-08 6.5E-13 98.9 7.4 76 5-94 421-496 (894)
78 KOG0110 RNA-binding protein (R 98.7 4.3E-08 9.4E-13 97.0 8.3 78 6-91 516-596 (725)
79 KOG0146 RNA-binding protein ET 98.7 2.2E-08 4.7E-13 89.2 5.3 83 4-95 18-103 (371)
80 KOG0153 Predicted RNA-binding 98.7 6.6E-08 1.4E-12 88.8 7.7 74 5-92 228-302 (377)
81 KOG0123 Polyadenylate-binding 98.7 7.2E-08 1.6E-12 91.6 8.3 76 6-95 2-77 (369)
82 KOG0124 Polypyrimidine tract-b 98.6 8.7E-08 1.9E-12 88.6 7.3 80 6-93 211-290 (544)
83 KOG1457 RNA binding protein (c 98.6 2.8E-07 6.1E-12 80.3 9.7 86 5-97 34-122 (284)
84 KOG4454 RNA binding protein (R 98.5 2.9E-08 6.2E-13 86.2 1.8 78 4-91 8-85 (267)
85 KOG4209 Splicing factor RNPS1, 98.5 3.6E-07 7.7E-12 81.5 7.5 82 3-93 99-180 (231)
86 KOG1995 Conserved Zn-finger pr 98.4 4.9E-07 1.1E-11 83.6 6.0 38 139-177 209-246 (351)
87 KOG0106 Alternative splicing f 98.4 3.5E-07 7.7E-12 80.1 4.6 72 7-94 3-74 (216)
88 KOG0226 RNA-binding proteins [ 98.4 4.7E-07 1E-11 80.2 5.0 82 4-93 189-270 (290)
89 smart00547 ZnF_RBZ Zinc finger 98.3 2E-07 4.2E-12 54.6 1.4 26 214-239 1-26 (26)
90 KOG4211 Splicing factor hnRNP- 98.3 2.8E-06 6E-11 81.5 8.0 77 5-93 10-86 (510)
91 KOG0151 Predicted splicing reg 98.1 3.9E-06 8.4E-11 83.4 6.6 83 3-93 172-257 (877)
92 KOG4211 Splicing factor hnRNP- 98.1 9.7E-06 2.1E-10 77.8 8.7 80 4-92 102-181 (510)
93 PF00641 zf-RanBP: Zn-finger i 98.1 8.1E-07 1.8E-11 53.8 0.5 29 145-175 1-29 (30)
94 KOG4660 Protein Mei2, essentia 98.1 2.9E-06 6.3E-11 82.3 4.2 70 4-86 74-143 (549)
95 KOG0120 Splicing factor U2AF, 98.1 3.3E-06 7.2E-11 82.2 4.1 83 5-95 289-371 (500)
96 KOG4849 mRNA cleavage factor I 98.0 4.6E-06 1E-10 77.0 4.5 78 6-89 81-158 (498)
97 KOG1190 Polypyrimidine tract-b 98.0 4.7E-05 1E-09 71.7 10.3 78 5-95 297-375 (492)
98 KOG4210 Nuclear localization s 97.9 8.4E-06 1.8E-10 74.9 4.2 84 4-96 183-267 (285)
99 KOG4206 Spliceosomal protein s 97.9 4.6E-05 9.9E-10 66.7 7.8 78 1-91 142-220 (221)
100 KOG0147 Transcriptional coacti 97.9 6.5E-06 1.4E-10 79.8 2.6 79 6-93 180-258 (549)
101 smart00547 ZnF_RBZ Zinc finger 97.8 9.4E-06 2E-10 47.3 1.7 25 147-173 1-25 (26)
102 KOG1457 RNA binding protein (c 97.8 2.5E-05 5.5E-10 68.3 4.1 64 5-80 210-273 (284)
103 PF11608 Limkain-b1: Limkain b 97.7 0.00014 3E-09 54.5 7.2 71 6-93 3-77 (90)
104 KOG0106 Alternative splicing f 97.5 5.8E-05 1.3E-09 66.3 3.1 69 5-89 99-167 (216)
105 KOG4307 RNA binding protein RB 97.5 0.00028 6E-09 70.5 7.9 76 6-89 868-943 (944)
106 PF08777 RRM_3: RNA binding mo 97.5 0.00025 5.3E-09 55.7 5.4 71 6-90 2-77 (105)
107 COG5175 MOT2 Transcriptional r 97.5 0.00025 5.5E-09 65.4 6.2 80 4-93 113-203 (480)
108 KOG1190 Polypyrimidine tract-b 97.4 0.00024 5.3E-09 67.0 5.9 78 3-92 412-490 (492)
109 KOG2314 Translation initiation 97.3 0.00048 1E-08 67.4 6.6 77 5-90 58-141 (698)
110 PF08952 DUF1866: Domain of un 97.3 0.0012 2.6E-08 54.5 7.7 76 1-93 23-107 (146)
111 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0012 2.6E-08 45.3 5.1 53 5-72 1-53 (53)
112 KOG1365 RNA-binding protein Fu 97.0 0.0011 2.3E-08 62.3 5.2 84 5-94 280-363 (508)
113 KOG0129 Predicted RNA-binding 96.8 0.0039 8.4E-08 60.6 7.3 63 4-74 369-432 (520)
114 KOG0129 Predicted RNA-binding 96.7 0.0054 1.2E-07 59.6 7.7 62 5-75 259-326 (520)
115 KOG1456 Heterogeneous nuclear 96.7 0.0059 1.3E-07 57.3 7.7 78 3-93 118-199 (494)
116 KOG3152 TBP-binding protein, a 96.7 0.0012 2.7E-08 58.9 2.8 72 5-84 74-157 (278)
117 KOG0105 Alternative splicing f 96.6 0.021 4.5E-07 49.0 9.7 62 5-81 115-176 (241)
118 KOG0120 Splicing factor U2AF, 96.6 0.0061 1.3E-07 59.8 7.2 64 21-92 425-491 (500)
119 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.016 3.4E-07 45.1 8.1 79 5-92 6-91 (100)
120 PF10309 DUF2414: Protein of u 96.4 0.017 3.8E-07 40.9 6.9 59 4-75 4-62 (62)
121 KOG1855 Predicted RNA-binding 96.4 0.0039 8.6E-08 59.3 4.6 67 3-77 229-308 (484)
122 KOG1456 Heterogeneous nuclear 96.4 0.017 3.6E-07 54.4 8.6 78 3-93 285-363 (494)
123 KOG1548 Transcription elongati 96.4 0.013 2.8E-07 54.5 7.8 79 4-94 264-353 (382)
124 KOG0112 Large RNA-binding prot 96.3 0.0046 1E-07 63.6 4.8 78 3-94 453-532 (975)
125 KOG1365 RNA-binding protein Fu 96.0 0.019 4.2E-07 54.1 6.9 63 7-74 163-225 (508)
126 KOG2193 IGF-II mRNA-binding pr 95.8 0.011 2.4E-07 56.3 4.5 76 6-95 2-78 (584)
127 KOG2416 Acinus (induces apopto 95.8 0.012 2.6E-07 58.2 4.7 76 4-93 443-522 (718)
128 KOG0128 RNA-binding protein SA 95.7 0.0047 1E-07 63.2 1.5 81 5-94 736-816 (881)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.026 5.7E-07 48.3 5.6 85 3-92 5-97 (176)
130 KOG0128 RNA-binding protein SA 95.5 0.0011 2.3E-08 67.8 -3.8 68 6-81 668-735 (881)
131 PF08675 RNA_bind: RNA binding 95.2 0.077 1.7E-06 39.8 6.1 54 6-76 10-63 (87)
132 KOG4676 Splicing factor, argin 95.1 0.035 7.5E-07 52.6 5.0 76 6-90 8-86 (479)
133 KOG2202 U2 snRNP splicing fact 94.8 0.018 3.8E-07 51.6 2.2 64 20-92 83-147 (260)
134 KOG4307 RNA binding protein RB 94.7 0.021 4.5E-07 57.5 2.5 77 5-89 434-510 (944)
135 KOG0115 RNA-binding protein p5 94.3 0.057 1.2E-06 48.5 4.1 62 6-76 32-93 (275)
136 KOG2068 MOT2 transcription fac 94.1 0.02 4.4E-07 53.1 1.0 82 5-94 77-164 (327)
137 KOG4660 Protein Mei2, essentia 94.0 0.077 1.7E-06 52.2 4.7 53 43-95 419-475 (549)
138 PF07576 BRAP2: BRCA1-associat 93.9 0.45 9.7E-06 37.6 8.1 68 6-82 13-81 (110)
139 PF11767 SET_assoc: Histone ly 93.8 0.38 8.3E-06 34.5 7.0 56 15-87 10-65 (66)
140 KOG1996 mRNA splicing factor [ 93.8 0.22 4.9E-06 45.6 7.0 64 20-91 301-365 (378)
141 PF03880 DbpA: DbpA RNA bindin 93.7 0.41 8.8E-06 34.8 7.2 72 7-90 2-74 (74)
142 PRK11634 ATP-dependent RNA hel 92.8 1.4 3.1E-05 45.0 12.0 68 14-93 496-563 (629)
143 PF12773 DZR: Double zinc ribb 92.2 0.15 3.2E-06 34.1 2.7 50 151-236 1-50 (50)
144 KOG0112 Large RNA-binding prot 91.7 0.045 9.9E-07 56.6 -0.4 78 4-90 371-448 (975)
145 PF15023 DUF4523: Protein of u 91.4 0.96 2.1E-05 37.5 7.1 73 2-90 83-159 (166)
146 KOG0804 Cytoplasmic Zn-finger 91.4 0.6 1.3E-05 45.2 6.8 70 4-82 73-142 (493)
147 KOG4574 RNA-binding protein (c 91.2 0.18 3.8E-06 52.1 3.2 77 7-97 300-378 (1007)
148 KOG2253 U1 snRNP complex, subu 91.0 0.15 3.2E-06 51.3 2.4 71 3-90 38-108 (668)
149 PF04847 Calcipressin: Calcipr 90.6 0.94 2E-05 39.1 6.7 63 18-94 8-72 (184)
150 KOG2135 Proteins containing th 89.7 0.21 4.7E-06 48.4 2.2 74 5-93 372-446 (526)
151 KOG4210 Nuclear localization s 89.3 0.2 4.4E-06 46.1 1.8 81 5-93 88-168 (285)
152 PF13248 zf-ribbon_3: zinc-rib 87.7 0.25 5.4E-06 28.6 0.8 23 216-238 3-25 (26)
153 PRK14559 putative protein seri 86.6 0.56 1.2E-05 48.0 3.1 50 150-240 3-52 (645)
154 KOG4285 Mitotic phosphoprotein 85.9 2.4 5.3E-05 39.1 6.5 67 8-90 200-267 (350)
155 PRK14714 DNA polymerase II lar 85.7 0.72 1.6E-05 50.0 3.4 53 147-241 666-721 (1337)
156 KOG0921 Dosage compensation co 85.3 6.6 0.00014 41.7 9.9 7 144-150 1231-1237(1282)
157 PF13240 zinc_ribbon_2: zinc-r 84.8 0.45 9.8E-06 26.8 0.8 22 217-238 1-22 (23)
158 cd00350 rubredoxin_like Rubred 83.3 1 2.3E-05 27.5 2.1 24 216-239 2-27 (33)
159 cd00729 rubredoxin_SM Rubredox 82.3 1.3 2.9E-05 27.3 2.3 25 215-239 2-28 (34)
160 KOG2591 c-Mpl binding protein, 80.7 2.4 5.1E-05 42.3 4.5 57 5-76 175-233 (684)
161 KOG2193 IGF-II mRNA-binding pr 80.4 0.24 5.1E-06 47.6 -2.3 78 5-93 80-157 (584)
162 KOG4477 RING1 interactor RYBP 77.5 0.93 2E-05 38.8 0.6 30 212-241 21-50 (228)
163 COG3478 Predicted nucleic-acid 72.9 1.5 3.2E-05 31.2 0.5 15 214-228 3-17 (68)
164 KOG4410 5-formyltetrahydrofola 72.4 5.1 0.00011 36.9 4.0 49 5-66 330-378 (396)
165 PF00301 Rubredoxin: Rubredoxi 71.9 1.9 4.2E-05 28.7 0.9 12 213-224 32-43 (47)
166 KOG3973 Uncharacterized conser 70.4 50 0.0011 31.4 10.0 8 140-147 381-388 (465)
167 PRK04136 rpl40e 50S ribosomal 70.1 2.1 4.5E-05 28.6 0.8 24 214-237 13-36 (48)
168 PRK00415 rps27e 30S ribosomal 67.6 5.2 0.00011 28.0 2.4 27 215-241 11-42 (59)
169 KOG4483 Uncharacterized conser 66.6 11 0.00024 36.2 5.1 55 6-74 392-446 (528)
170 cd00730 rubredoxin Rubredoxin; 64.4 3.3 7.1E-05 28.0 0.8 13 212-224 31-43 (50)
171 PF03468 XS: XS domain; Inter 63.8 8.9 0.00019 30.5 3.4 56 7-73 10-75 (116)
172 COG1592 Rubrerythrin [Energy p 63.3 4.4 9.5E-05 34.4 1.6 26 215-240 134-160 (166)
173 COG0484 DnaJ DnaJ-class molecu 59.6 11 0.00023 36.1 3.7 21 10-30 9-29 (371)
174 PRK11788 tetratricopeptide rep 54.6 7.1 0.00015 36.3 1.6 27 213-239 352-378 (389)
175 KOG2891 Surface glycoprotein [ 53.2 13 0.00027 34.3 2.9 53 5-60 149-213 (445)
176 PF12172 DUF35_N: Rubredoxin-l 53.2 8.4 0.00018 23.8 1.3 22 217-238 13-34 (37)
177 PRK04023 DNA polymerase II lar 53.1 16 0.00034 39.3 3.9 54 144-241 622-675 (1121)
178 PF03833 PolC_DP2: DNA polymer 50.6 5.2 0.00011 42.0 0.0 50 145-238 652-701 (900)
179 COG1773 Rubredoxin [Energy pro 49.8 8 0.00017 26.7 0.8 12 212-223 33-44 (55)
180 PF10571 UPF0547: Uncharacteri 49.3 9.8 0.00021 22.0 1.0 21 217-237 2-22 (26)
181 PF02714 DUF221: Domain of unk 48.3 19 0.00041 33.2 3.4 36 58-95 1-36 (325)
182 smart00596 PRE_C2HC PRE_C2HC d 48.2 28 0.0006 25.2 3.4 64 20-93 2-65 (69)
183 PRK00432 30S ribosomal protein 47.0 11 0.00024 25.3 1.2 21 217-237 22-45 (50)
184 COG1545 Predicted nucleic-acid 46.1 14 0.0003 30.3 1.9 22 217-238 31-52 (140)
185 COG0724 RNA-binding proteins ( 45.6 25 0.00055 29.9 3.6 63 3-73 223-285 (306)
186 PTZ00146 fibrillarin; Provisio 45.5 44 0.00095 31.0 5.2 7 167-173 78-84 (293)
187 PHA00626 hypothetical protein 45.0 13 0.00029 25.7 1.3 25 217-241 2-35 (59)
188 PF09862 DUF2089: Protein of u 43.4 14 0.00031 29.3 1.4 41 218-265 1-41 (113)
189 PF11682 DUF3279: Protein of u 43.2 19 0.0004 29.3 2.1 30 210-240 92-121 (128)
190 PF09855 DUF2082: Nucleic-acid 41.4 12 0.00026 26.6 0.7 12 216-227 1-12 (64)
191 KOG1295 Nonsense-mediated deca 41.1 30 0.00066 33.0 3.5 71 5-82 7-79 (376)
192 PF12760 Zn_Tnp_IS1595: Transp 40.5 26 0.00056 22.8 2.2 22 216-237 19-45 (46)
193 PF07530 PRE_C2HC: Associated 39.7 52 0.0011 23.5 3.8 64 20-93 2-65 (68)
194 PF15513 DUF4651: Domain of un 38.8 64 0.0014 22.8 4.0 15 20-34 9-23 (62)
195 smart00661 RPOL9 RNA polymeras 38.7 17 0.00037 23.9 1.1 14 215-228 20-33 (52)
196 COG1552 RPL40A Ribosomal prote 38.5 5.3 0.00011 26.8 -1.4 22 216-237 15-36 (50)
197 PRK11901 hypothetical protein; 38.5 75 0.0016 29.9 5.6 57 12-78 249-307 (327)
198 KOG4454 RNA binding protein (R 37.8 7.6 0.00017 34.5 -0.9 64 7-79 82-149 (267)
199 KOG4008 rRNA processing protei 36.7 28 0.00061 31.2 2.4 33 2-34 37-69 (261)
200 KOG4676 Splicing factor, argin 36.4 6.9 0.00015 37.5 -1.5 63 6-81 152-214 (479)
201 cd04718 BAH_plant_2 BAH, or Br 36.3 22 0.00047 29.6 1.6 19 211-229 14-32 (148)
202 PF10058 DUF2296: Predicted in 36.3 18 0.00039 24.7 0.9 15 211-225 40-54 (54)
203 KOG4019 Calcineurin-mediated s 34.9 40 0.00086 29.1 2.9 75 6-94 11-91 (193)
204 PRK13130 H/ACA RNA-protein com 34.7 32 0.0007 23.8 1.9 25 216-242 6-30 (56)
205 PF10005 DUF2248: Uncharacteri 34.3 23 0.0005 33.5 1.6 24 217-240 1-24 (343)
206 PF14952 zf-tcix: Putative tre 34.3 20 0.00042 23.5 0.8 26 214-239 10-37 (44)
207 PF05191 ADK_lid: Adenylate ki 33.7 28 0.00062 21.7 1.4 22 216-237 2-29 (36)
208 PRK14559 putative protein seri 33.6 21 0.00045 36.8 1.3 30 213-244 13-42 (645)
209 COG4260 Membrane protease subu 33.2 20 0.00042 33.2 0.9 20 212-236 303-322 (345)
210 TIGR02098 MJ0042_CXXC MJ0042 f 32.8 34 0.00074 21.0 1.7 21 217-237 4-33 (38)
211 COG1998 RPS31 Ribosomal protei 32.6 20 0.00043 24.2 0.6 10 227-236 35-44 (51)
212 PRK00398 rpoP DNA-directed RNA 32.3 36 0.00079 22.0 1.9 23 216-238 4-30 (46)
213 TIGR03636 L23_arch archaeal ri 31.4 1.4E+02 0.0031 21.9 5.1 58 7-73 15-72 (77)
214 PRK14873 primosome assembly pr 31.3 29 0.00062 35.9 1.8 25 215-241 410-434 (665)
215 KOG2318 Uncharacterized conser 31.0 2.3E+02 0.0051 28.8 7.9 78 4-89 173-302 (650)
216 PF07292 NID: Nmi/IFP 35 domai 30.3 25 0.00054 26.7 0.9 25 3-27 50-74 (88)
217 COG2051 RPS27A Ribosomal prote 30.1 27 0.00058 25.0 1.0 27 215-241 19-50 (67)
218 PRK14548 50S ribosomal protein 29.5 1.5E+02 0.0033 22.1 5.0 57 8-73 23-79 (84)
219 COG1379 PHP family phosphoeste 29.3 17 0.00036 34.3 -0.2 12 212-223 262-273 (403)
220 PRK00420 hypothetical protein; 28.5 34 0.00073 27.1 1.4 26 216-241 24-52 (112)
221 COG1066 Sms Predicted ATP-depe 28.4 33 0.00072 33.5 1.6 22 216-237 8-29 (456)
222 KOG4477 RING1 interactor RYBP 27.8 35 0.00076 29.4 1.4 29 145-175 21-49 (228)
223 PF09779 Ima1_N: Ima1 N-termin 27.7 57 0.0012 26.4 2.7 13 215-227 20-32 (131)
224 PF04810 zf-Sec23_Sec24: Sec23 27.0 34 0.00074 21.6 1.0 14 214-227 23-36 (40)
225 PRK10333 5-formyltetrahydrofol 26.7 23 0.0005 30.2 0.2 17 245-261 123-139 (182)
226 PF09986 DUF2225: Uncharacteri 26.2 33 0.00072 30.1 1.1 18 211-228 44-61 (214)
227 PF11023 DUF2614: Protein of u 25.2 37 0.00081 26.9 1.1 31 214-244 68-100 (114)
228 KOG0956 PHD finger protein AF1 25.1 33 0.00071 35.5 0.9 25 145-171 45-69 (900)
229 PF09567 RE_MamI: MamI restric 24.5 80 0.0017 28.7 3.2 45 217-266 84-128 (314)
230 PF01599 Ribosomal_S27: Riboso 24.4 42 0.00092 22.4 1.1 25 148-172 18-46 (47)
231 PRK05452 anaerobic nitric oxid 24.1 35 0.00075 33.8 0.9 12 213-224 456-467 (479)
232 PF14446 Prok-RING_1: Prokaryo 23.5 41 0.00088 23.1 0.9 22 218-239 8-31 (54)
233 COG3254 Uncharacterized conser 22.9 2.3E+02 0.0051 22.1 5.1 42 20-72 27-68 (105)
234 COG4640 Predicted membrane pro 22.8 42 0.00091 32.4 1.1 26 217-242 3-28 (465)
235 COG4907 Predicted membrane pro 22.7 1.8E+02 0.0038 28.9 5.3 47 20-79 489-539 (595)
236 COG1645 Uncharacterized Zn-fin 22.5 53 0.0011 26.8 1.5 13 212-224 41-53 (131)
237 TIGR02727 MTHFS_bact 5,10-meth 22.5 34 0.00075 28.9 0.5 16 245-260 129-144 (181)
238 TIGR00595 priA primosomal prot 22.2 66 0.0014 32.1 2.5 24 215-239 240-263 (505)
239 PF10567 Nab6_mRNP_bdg: RNA-re 21.3 2E+02 0.0043 26.8 5.1 79 5-91 15-106 (309)
240 PLN02812 5-formyltetrahydrofol 21.3 32 0.00068 30.1 -0.0 16 246-261 146-161 (211)
241 PRK09710 lar restriction allev 21.0 55 0.0012 23.3 1.2 23 216-238 7-36 (64)
242 PRK03824 hypA hydrogenase nick 20.8 72 0.0016 25.9 2.0 29 212-241 67-119 (135)
243 TIGR00311 aIF-2beta translatio 20.7 64 0.0014 26.3 1.7 28 214-241 96-130 (133)
244 PF11261 IRF-2BP1_2: Interfero 20.6 42 0.0009 22.8 0.5 15 227-241 1-15 (54)
245 PF12385 Peptidase_C70: Papain 20.4 1.6E+02 0.0034 24.9 3.9 21 16-36 95-115 (166)
246 PRK11788 tetratricopeptide rep 20.2 60 0.0013 30.1 1.6 29 145-175 351-379 (389)
247 COG1997 RPL43A Ribosomal prote 20.1 56 0.0012 24.7 1.1 13 212-224 50-62 (89)
No 1
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=211.59 Aligned_cols=203 Identities=38% Similarity=0.645 Sum_probs=148.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+.+.+|||.+||..+++++|.++|.+++.|...++|++|+|+|+++++|+++|+-|.|+|.+...|+.||+++++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCccCCcccc
Q 023286 83 NLIGVFIAESRGKDDHAYNSAAAAGDPTVAGDVSGLDENSRDVNGFAGRGRGRGDAVGKTWQQDGDWMCPNTSCSNVNFA 162 (284)
Q Consensus 83 r~i~V~~a~~~~~~~~~~~~~~~~~~~~~~gg~GG~~~~~~~~~~~ggrG~g~gg~~gg~~~r~GDW~C~~~~Cg~~NF~ 162 (284)
.+|+|.+|+.+.......... |+ .|+.--|.
T Consensus 144 n~ikvs~a~~r~~ve~~rg~~-----------------------------------------------~~--~~g~g~fg 174 (351)
T KOG1995|consen 144 NTIKVSLAERRTGVESVRGGY-----------------------------------------------PN--DGGAGEFG 174 (351)
T ss_pred CCchhhhhhhccCcccccccc-----------------------------------------------cC--cCCCCCcc
Confidence 999999998765433221100 00 00000011
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecC-CCCCeeecccccCccCCCCCCC
Q 023286 163 FRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCP-MCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 163 ~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~-~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
. .+|..-.+.+..+..+. .+. ..+++- ......+...++.+++||.|+ .|.|+||++|..||+|+++||.
T Consensus 175 ~----~~~grg~~~G~gg~~~~-~~~-~~rGg~---~~~g~~g~~~~~~~d~Dw~c~~~c~N~nfa~r~~cnrck~~Kp~ 245 (351)
T KOG1995|consen 175 R----LRGGRGGPGGPGGGDGE-AGK-GDRGGV---PDGGESGGGNVQDEDGDWDCPPSCGNRNFAWREECNRCKAPKPE 245 (351)
T ss_pred c----cccCCCCCCCCCCcccc-ccc-cccCCc---CCCcccCCcccccccccccccccccccccccccccccccCCCcc
Confidence 1 12222222222222111 111 111111 111145567788999999999 9999999999999999999998
Q ss_pred C---CCCCCCCCCCCCcCcCChHHH
Q 023286 242 H---NEGGVRGGRGGGYKELDEEEL 263 (284)
Q Consensus 242 ~---~~~~~~~g~~gg~~~~~~~~~ 263 (284)
. ..++.+...++++.+.|...+
T Consensus 246 ~~~~~gg~~~g~~~~g~~~~dr~~~ 270 (351)
T KOG1995|consen 246 RSLPSGGGPGGSRGEGGPGGDRGGM 270 (351)
T ss_pred cccCCCCCCCCCccCCCCccccccc
Confidence 6 556777788888888776544
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=4.1e-19 Score=147.28 Aligned_cols=84 Identities=26% Similarity=0.378 Sum_probs=79.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+++|||+|||+++||++|+++|.+||.|.. |.|+.++.|++++|||||+|.+.++|++||+.|++..|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD--------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4678999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|+++..+..
T Consensus 105 ~l~V~~a~~~~~ 116 (144)
T PLN03134 105 HIRVNPANDRPS 116 (144)
T ss_pred EEEEEeCCcCCC
Confidence 999999986654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=7.6e-16 Score=144.71 Aligned_cols=84 Identities=32% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G- 82 (284)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.|+++++||||+|.++++|++||+.||+..|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ--------KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3578999999999999999999999999988 7899999999999999999999999999999999998876
Q ss_pred -ceEEEEecccCCC
Q 023286 83 -NLIGVFIAESRGK 95 (284)
Q Consensus 83 -r~i~V~~a~~~~~ 95 (284)
++|+|.+++...+
T Consensus 264 ~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 264 SQPLTVRLAEEHGK 277 (346)
T ss_pred ceeEEEEECCcccc
Confidence 6899999886644
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=1.1e-15 Score=142.95 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=78.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||+|||+++++++|+++|++||.|.. |+|++|+.|+.++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~--------v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQN--------VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 36999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|.++..+..
T Consensus 342 ~V~~~~~~~~ 351 (352)
T TIGR01661 342 QVSFKTNKAY 351 (352)
T ss_pred EEEEccCCCC
Confidence 9999987754
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=2e-15 Score=141.27 Aligned_cols=83 Identities=27% Similarity=0.346 Sum_probs=79.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+.++|||+|||.++||++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIES--------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEE--------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 4689999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
+|+|+++++..
T Consensus 74 ~i~v~~a~~~~ 84 (352)
T TIGR01661 74 TIKVSYARPSS 84 (352)
T ss_pred eEEEEeecccc
Confidence 99999987654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.3e-15 Score=141.44 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=78.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
..++|||++||+++|+++|+++|++||.|.. |+|++|+.|++++|||||+|.++++|++||+.|++..|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~--------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINT--------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 4679999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
+|+|.++++.
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 9999998754
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=6.9e-15 Score=105.25 Aligned_cols=70 Identities=31% Similarity=0.528 Sum_probs=65.9
Q ss_pred EEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 8 IyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
|||+|||.++|+++|+++|++||.|.. +.++.+ .++.++++|||+|.+.++|++||+.|++..|.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES--------IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE--------EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc--------cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999987 778887 5789999999999999999999999999999999875
No 8
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=99.59 E-value=1.7e-15 Score=136.33 Aligned_cols=101 Identities=27% Similarity=0.517 Sum_probs=70.3
Q ss_pred CCcccCCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCC-----CCC--CCC-----CCCCCCCCCCCCCC
Q 023286 140 GKTWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGG-----RGR--GRA-----GNESGSQGRQIGAA 207 (284)
Q Consensus 140 gg~~~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg-----~~~--g~~-----~~~~~~~~~~~~~~ 207 (284)
....++++||.|+ .|+++||++|+.|++|+.+++.-........-+ .+. ..+ .+.+.+..+.. ++
T Consensus 56 ~~~~~~pgdw~c~--~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~-~~ 132 (280)
T KOG4198|consen 56 SKDPPRPGDWNCP--LCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNN-KP 132 (280)
T ss_pred cCCCCCCcccccC--ccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccc-cc
Confidence 3455689999999 699999999999999999988654422111111 000 000 01111112211 25
Q ss_pred CCCCCCCceecCCCCCeeecccccCccCCCCCCCCC
Q 023286 208 TGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (284)
Q Consensus 208 ~~~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~ 243 (284)
..+|++|||+|+.|+++||++++.|++|+++++..+
T Consensus 133 ~r~~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a 168 (280)
T KOG4198|consen 133 KRPWRSGDWECPGCNFHNFARNSECFRCGAKRPLAA 168 (280)
T ss_pred cCCccccCcccCCCCceeccccchhhhcCCcCcccc
Confidence 567999999999999999999999999999999854
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.6e-15 Score=129.71 Aligned_cols=82 Identities=32% Similarity=0.397 Sum_probs=78.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++.+|-|.|||.+++|++|+++|.+||.|.. |.|.+|++||.+||||||+|.+.++|.+||..|||+-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r--------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR--------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce--------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 4578999999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|+|++++|+
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 9999999986
No 10
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2e-14 Score=120.12 Aligned_cols=78 Identities=36% Similarity=0.543 Sum_probs=72.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
.++|||+||+..+++.||+.+|..||.|.. |||-++ +.|||||+|+++.+|+.|+..|+|..|.|..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--------vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCccee--------EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 679999999999999999999999999988 888775 4699999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|+|++++.+..
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999986654
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=8.4e-14 Score=100.43 Aligned_cols=70 Identities=33% Similarity=0.558 Sum_probs=64.1
Q ss_pred EEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 8 IyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
|||+|||+++++++|.++|+.||.|.. |.+..++. +.++++|||+|.++++|++|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~--------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEK--------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEE--------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcce--------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999877 88999887 89999999999999999999999999999999874
No 12
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.4e-14 Score=124.83 Aligned_cols=84 Identities=29% Similarity=0.335 Sum_probs=79.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
=.||||+-|+.+++|++|+..|+.||.|+. |+|+.|+.|++++|||||+|+++.++..|.+..++.+|+++.
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~Ikr--------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKR--------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCccee--------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 369999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 023286 85 IGVFIAESRGKD 96 (284)
Q Consensus 85 i~V~~a~~~~~~ 96 (284)
|.|.+-..+...
T Consensus 173 i~VDvERgRTvk 184 (335)
T KOG0113|consen 173 ILVDVERGRTVK 184 (335)
T ss_pred EEEEeccccccc
Confidence 999998765543
No 13
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.8e-14 Score=124.26 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=72.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|||++|+++++.++|+++|++||+|.+ ..|+.|+.|+++|||+||+|.+.++|++|++. ....|+||+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~e--------avvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~a 83 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVE--------AVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKA 83 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEE--------EEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccc
Confidence 68999999999999999999999999998 55999999999999999999999999999984 4467999999
Q ss_pred EEEeccc
Q 023286 86 GVFIAES 92 (284)
Q Consensus 86 ~V~~a~~ 92 (284)
.+++|..
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9999875
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=5.9e-14 Score=120.13 Aligned_cols=81 Identities=27% Similarity=0.314 Sum_probs=77.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|-|-||.+.++.++|+.+|++||.|-. |.|++|+.|.+++|||||.|.+..+|+.||+.|+|.+|+|+.|
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgD--------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGD--------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccc--------eecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 57999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 023286 86 GVFIAESRG 94 (284)
Q Consensus 86 ~V~~a~~~~ 94 (284)
.|++|+--.
T Consensus 86 rVq~arygr 94 (256)
T KOG4207|consen 86 RVQMARYGR 94 (256)
T ss_pred eehhhhcCC
Confidence 999998543
No 15
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2e-13 Score=115.13 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=69.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
..+.+|||+|||.++.+.||+++|.+||.|.. |.|...+ .+..||||+|+++.+|+.||..-++..+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~--------ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg 72 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIRE--------IELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDG 72 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEE--------EEeccCC---CCCCeeEEEecCccchhhhhhcccccccCc
Confidence 34679999999999999999999999999987 5443322 356799999999999999999999999999
Q ss_pred ceEEEEecccC
Q 023286 83 NLIGVFIAESR 93 (284)
Q Consensus 83 r~i~V~~a~~~ 93 (284)
..|+|+++..-
T Consensus 73 ~rLRVEfprgg 83 (241)
T KOG0105|consen 73 CRLRVEFPRGG 83 (241)
T ss_pred ceEEEEeccCC
Confidence 99999998744
No 16
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.9e-14 Score=110.58 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=76.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+++|||+||+..++|+.|.++|+++|.|.. |-+-.|+.+-.+-||+||+|.+.++|+.||..+++..|+.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irr--------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRR--------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhe--------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 5789999999999999999999999999998 76778999999999999999999999999999999999999
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
+|.|.+...
T Consensus 107 ~ir~D~D~G 115 (153)
T KOG0121|consen 107 PIRIDWDAG 115 (153)
T ss_pred ceeeecccc
Confidence 999998753
No 17
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.4e-14 Score=121.96 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=82.3
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|+....+|||++|..+++|.-|...|..||.|+. |.++.|.++++.|||+||+|...++|.+||..||..+|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~d--------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL 77 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKD--------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL 77 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhh--------cccccchhcccccceeEEEeeccchhHHHhhcCchhhh
Confidence 5667889999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|++|+|.+|+|..-
T Consensus 78 ~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 78 FGRTIRVNLAKPEKI 92 (298)
T ss_pred cceeEEEeecCCccc
Confidence 999999999997643
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=9.5e-13 Score=130.52 Aligned_cols=76 Identities=29% Similarity=0.409 Sum_probs=68.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhcc--CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~--G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
..+|||+|||.++|+++|+++|++| |.|+. |+++ ++||||+|.+.++|++||+.||+.+|.|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r--------V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVER--------VKKI--------RDYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE--------EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 5689999999999999999999999 99987 5444 3599999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|+++++....
T Consensus 297 r~I~V~~Akp~~~~ 310 (578)
T TIGR01648 297 SEIEVTLAKPVDKK 310 (578)
T ss_pred EEEEEEEccCCCcc
Confidence 99999999876543
No 19
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.6e-13 Score=128.69 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=70.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceecC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDP--HAALAAVEWFNNKDFHG 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~--e~A~~Ai~~lng~~l~G 82 (284)
..+|||+||++.++++||+.+|.+||.|.. |.|+ ++|| ||||||+|.+. .++.+||..||+..|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkd--------VEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKG 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDA--------VEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKG 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence 468999999999999999999999999998 7788 5667 89999999987 78999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
+.|+|+.|++
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999999986
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=4.7e-13 Score=119.75 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=71.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+|||+|||+.+|+++|+++|+.||.|.. |.|+.++. .++||||+|.++++|+.||. |++..|.|+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~--------V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEY--------VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 3679999999999999999999999999998 88988874 56899999999999999995 999999999
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
.|.|.++..
T Consensus 71 ~V~Vt~a~~ 79 (260)
T PLN03120 71 SVTITPAED 79 (260)
T ss_pred eEEEEeccC
Confidence 999999864
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=4.1e-13 Score=133.51 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=78.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++++++|+++|++||.|.. ++|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~s--------vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 468999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|+|.++...+.
T Consensus 276 LrV~kAi~pP~ 286 (612)
T TIGR01645 276 LRVGKCVTPPD 286 (612)
T ss_pred EEEEecCCCcc
Confidence 99999886543
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.44 E-value=4.7e-13 Score=133.04 Aligned_cols=80 Identities=31% Similarity=0.341 Sum_probs=75.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+|||+|||+++++++|+++|.+||.|.. |+|++|+.|++++|||||+|.++++|+.||+.||+..|.|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s--------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEE--------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 3568999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecc
Q 023286 84 LIGVFIAE 91 (284)
Q Consensus 84 ~i~V~~a~ 91 (284)
.|+|....
T Consensus 178 ~IkV~rp~ 185 (612)
T TIGR01645 178 NIKVGRPS 185 (612)
T ss_pred eeeecccc
Confidence 99998643
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.43 E-value=6.4e-13 Score=128.84 Aligned_cols=80 Identities=30% Similarity=0.347 Sum_probs=76.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+.+|||+|||..+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.|++..|.|++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIED--------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEE
Confidence 579999999999999999999999999988 889999999999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 023286 85 IGVFIAES 92 (284)
Q Consensus 85 i~V~~a~~ 92 (284)
|.|.++..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999873
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.43 E-value=8.2e-13 Score=129.70 Aligned_cols=82 Identities=32% Similarity=0.360 Sum_probs=77.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||..+|+++|+++|.+||.|.. |.|++++.|+.++|||||+|.+.++|+.||+.|++..|.++.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKA--------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 468999999999999999999999999988 789999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|.|.++....
T Consensus 367 l~v~~a~~~~ 376 (509)
T TIGR01642 367 LHVQRACVGA 376 (509)
T ss_pred EEEEECccCC
Confidence 9999987543
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.2e-14 Score=120.58 Aligned_cols=80 Identities=29% Similarity=0.367 Sum_probs=76.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++.-|||+|||+++||.||..+|++||+|+. |.|++|+.||+++||||+.|++.-+...|+..|||..|.|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vd--------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVD--------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEE--------EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 5678999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecc
Q 023286 84 LIGVFIAE 91 (284)
Q Consensus 84 ~i~V~~a~ 91 (284)
+|+|....
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 99999753
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=1.3e-12 Score=92.23 Aligned_cols=72 Identities=31% Similarity=0.436 Sum_probs=66.0
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
+|||.|||..+++++|+++|.+||.+.. |.++.++ +.++++|||+|.+.++|++|++.+++..+.++.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 5899999999999999999999999987 7777766 67889999999999999999999999999999888
Q ss_pred EE
Q 023286 87 VF 88 (284)
Q Consensus 87 V~ 88 (284)
|+
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 73
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=7.2e-13 Score=131.99 Aligned_cols=79 Identities=28% Similarity=0.389 Sum_probs=75.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||+|||.++||++|+++|++||.|.. |+|++|+.|++++|||||+|.++++|++||+.|++..|.|+.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~--------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLS--------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 37999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred EEEeccc
Q 023286 86 GVFIAES 92 (284)
Q Consensus 86 ~V~~a~~ 92 (284)
+|.++..
T Consensus 73 ~i~~s~~ 79 (562)
T TIGR01628 73 RIMWSQR 79 (562)
T ss_pred Eeecccc
Confidence 9998764
No 28
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.8e-13 Score=121.38 Aligned_cols=80 Identities=25% Similarity=0.216 Sum_probs=73.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
.++|||+|||+...+.||+.+|.+||.|.+ |.|+.+.. -+|||+||+|+++++|++|-+.|||..|.||+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld--------VEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLD--------VEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceee--------EEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 468999999999999999999999999998 88888753 48999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|.|..|..+.
T Consensus 166 IEVn~ATarV 175 (376)
T KOG0125|consen 166 IEVNNATARV 175 (376)
T ss_pred EEEeccchhh
Confidence 9999988653
No 29
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7e-13 Score=106.66 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=78.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|||.++.+.+||++|.+.|..||.|+. |.|-.|+.||..||||+|+|++.++|++||+.+|+..|++.+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKN--------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKN--------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccc--------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 357999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|.++..+.+
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999986654
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.3e-12 Score=126.65 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=75.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||..+++++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||. |++..|.|+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRD--------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 4679999999999999999999999999988 8899999999999999999999999999997 999999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
+|.|.++...
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 9999987643
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.8e-12 Score=114.39 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=72.8
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|.+...+|||+||++.+|+++|+++|+.||.|.. |+|+++.+ .++||||+|.++++|+.||. |+|..|
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~--------V~I~~D~e---t~gfAfVtF~d~~aaetAll-LnGa~l 68 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEH--------VEIIRSGE---YACTAYVTFKDAYALETAVL-LSGATI 68 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEE--------EEEecCCC---cceEEEEEECCHHHHHHHHh-cCCCee
Confidence 6677789999999999999999999999999998 88998864 45799999999999999995 999999
Q ss_pred cCceEEEEeccc
Q 023286 81 HGNLIGVFIAES 92 (284)
Q Consensus 81 ~Gr~i~V~~a~~ 92 (284)
.++.|.|..+..
T Consensus 69 ~d~~I~It~~~~ 80 (243)
T PLN03121 69 VDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEeCcc
Confidence 999999998763
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=1.7e-12 Score=129.26 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=77.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
....+|||+||+.++|+++|+++|++||.|.. |+|+.+ .++.++|||||+|.+.++|++||..||+..|.|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~--------~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITS--------AKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEE--------EEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 34578999999999999999999999999998 789988 579999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|.|.+|..+..
T Consensus 354 k~l~V~~a~~k~~ 366 (562)
T TIGR01628 354 KPLYVALAQRKEQ 366 (562)
T ss_pred ceeEEEeccCcHH
Confidence 9999999987543
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2.6e-12 Score=90.31 Aligned_cols=71 Identities=38% Similarity=0.497 Sum_probs=66.0
Q ss_pred eccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEE
Q 023286 10 VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVF 88 (284)
Q Consensus 10 V~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~ 88 (284)
|.|||..+++++|+++|.+||.|.. |.+..++.++.++++|||+|.+.++|..|++.|++..+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES--------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE--------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999987 7788888789999999999999999999999999999999998874
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.3e-12 Score=115.36 Aligned_cols=84 Identities=29% Similarity=0.387 Sum_probs=79.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
.+.|+|.-||..+|++||+.+|...|+|++ +++++|+.||++-||+||.|.++++|++||..|||..|..++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 357899999999999999999999999999 779999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q 023286 85 IGVFIAESRGKD 96 (284)
Q Consensus 85 i~V~~a~~~~~~ 96 (284)
|+|+||+|....
T Consensus 113 IKVSyARPSs~~ 124 (360)
T KOG0145|consen 113 IKVSYARPSSDS 124 (360)
T ss_pred EEEEeccCChhh
Confidence 999999986543
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=2.6e-12 Score=112.64 Aligned_cols=80 Identities=35% Similarity=0.510 Sum_probs=76.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|.++|.+||.|.. |.|..++.+++++|||||+|.++++|..|++.+++..|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~--------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeE--------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 489999999999999999999999999987 889999999999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 023286 85 IGVFIAES 92 (284)
Q Consensus 85 i~V~~a~~ 92 (284)
|.|.++..
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999763
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.5e-12 Score=120.78 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=73.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-Cc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-GN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~-Gr 83 (284)
.+-|||+.||.++.|++|..+|++.|.|-. ++|++|+.+|.+||||||+|.+.++|++||+.||+++|. |+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~e--------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYE--------LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceee--------EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 468999999999999999999999999988 999999999999999999999999999999999999986 78
Q ss_pred eEEEEecc
Q 023286 84 LIGVFIAE 91 (284)
Q Consensus 84 ~i~V~~a~ 91 (284)
.|.|..+.
T Consensus 155 ~igvc~Sv 162 (506)
T KOG0117|consen 155 LLGVCVSV 162 (506)
T ss_pred EeEEEEee
Confidence 88877754
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=2.4e-12 Score=127.62 Aligned_cols=76 Identities=32% Similarity=0.461 Sum_probs=69.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-Cc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-GN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~-Gr 83 (284)
.++|||+|||.+++|++|+++|++||.|.. |+|++| .+++++|||||+|.+.++|++||+.||+..|. ++
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr 128 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR 128 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence 479999999999999999999999999998 889999 78999999999999999999999999998885 66
Q ss_pred eEEEEe
Q 023286 84 LIGVFI 89 (284)
Q Consensus 84 ~i~V~~ 89 (284)
.|.|..
T Consensus 129 ~l~V~~ 134 (578)
T TIGR01648 129 LLGVCI 134 (578)
T ss_pred cccccc
Confidence 665543
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.2e-11 Score=87.62 Aligned_cols=74 Identities=36% Similarity=0.511 Sum_probs=67.5
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
+|||.+||..+++++|+++|..+|.|.. +.+..++.+ .+++++||+|.+.++|..|++.+++..+.++.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~--------~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES--------VRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE--------EEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4899999999999999999999999987 778877754 7789999999999999999999999999999998
Q ss_pred EEe
Q 023286 87 VFI 89 (284)
Q Consensus 87 V~~ 89 (284)
|.+
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 864
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=116.30 Aligned_cols=81 Identities=27% Similarity=0.346 Sum_probs=71.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+....|||.||+.++||+.|+++|.+||.|.. |+.++ -||||+|.+.++|.+||+.+|+++|+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR--------Vkk~r--------DYaFVHf~eR~davkAm~~~ngkeldG 320 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVER--------VKKPR--------DYAFVHFAEREDAVKAMKETNGKELDG 320 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEE--------eeccc--------ceeEEeecchHHHHHHHHHhcCceecC
Confidence 34578999999999999999999999999987 54543 399999999999999999999999999
Q ss_pred ceEEEEecccCCCCCcc
Q 023286 83 NLIGVFIAESRGKDDHA 99 (284)
Q Consensus 83 r~i~V~~a~~~~~~~~~ 99 (284)
..|.|.+|+|..+....
T Consensus 321 ~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 321 SPIEVTLAKPVDKKKKE 337 (506)
T ss_pred ceEEEEecCChhhhccc
Confidence 99999999987765443
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=5.2e-12 Score=121.15 Aligned_cols=82 Identities=28% Similarity=0.399 Sum_probs=78.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
..|||+|||+++++++|..+|++.|.|.+ ++++.|++||+++||+|++|.+.++|+.|++.||+.++.|++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s--------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS--------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce--------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 88999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|.++.....
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999886554
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=8.8e-12 Score=110.71 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=74.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
++.+++|||+||+.-+||++|++.|+.||.|.+ |+|++++ ||+||.|++.|+|..||..+|+.+|.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--------VRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--------VRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceE--------EEEeccc------ceEEEEecchhhHHHHHHHhcCceeC
Confidence 467899999999999999999999999999998 9999876 79999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|+..+-+....
T Consensus 227 G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 227 GQLVRCSWGKEGDD 240 (321)
T ss_pred ceEEEEeccccCCC
Confidence 99999999876544
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.30 E-value=3.5e-12 Score=107.40 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=77.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..||||+||+..++++.|.++|.+.|.|.. |+|++|+.|.+.+|||||+|.++++|+-|++.||...|.|+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~--------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVN--------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceee--------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
+|+|..+..
T Consensus 80 pIrv~kas~ 88 (203)
T KOG0131|consen 80 PIRVNKASA 88 (203)
T ss_pred eeEEEeccc
Confidence 999999883
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.29 E-value=1.7e-11 Score=120.27 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+++.+|||+|||+ .+|+++|+++|++||.|.. |+|++++ +|||||+|.++++|+.||..||+..|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~--------vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~ 339 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER--------VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLF 339 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3667999999998 6999999999999999998 7788764 589999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|++|+|.+++.+.
T Consensus 340 g~~l~v~~s~~~~ 352 (481)
T TIGR01649 340 GKPLRVCPSKQQN 352 (481)
T ss_pred CceEEEEEccccc
Confidence 9999999987653
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.29 E-value=1.1e-11 Score=113.30 Aligned_cols=93 Identities=33% Similarity=0.514 Sum_probs=87.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.++.|||+|||.++|.+++.++|+++|.|..+.+|+.|+|+|+++.. |+.+|-|.+.|...++++.|+..|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 45679999999999999999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred eEEEEecccCCCCC
Q 023286 84 LIGVFIAESRGKDD 97 (284)
Q Consensus 84 ~i~V~~a~~~~~~~ 97 (284)
.|+|+.|+.+.+..
T Consensus 212 ~~rVerAkfq~Kge 225 (382)
T KOG1548|consen 212 KLRVERAKFQMKGE 225 (382)
T ss_pred EEEEehhhhhhccC
Confidence 99999999876644
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.3e-11 Score=109.64 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=77.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.-|||+-|..+++-++|++.|.+||+|.+ .+|++|..|+++|||+||.|...++|+.||..|||.=|..|.|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~--------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSD--------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred eeEEehhcchhcchHHHHHHhcccccccc--------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 46999999999999999999999999998 5699999999999999999999999999999999999999999
Q ss_pred EEEecccCC
Q 023286 86 GVFIAESRG 94 (284)
Q Consensus 86 ~V~~a~~~~ 94 (284)
+-.+|..++
T Consensus 135 RTNWATRKp 143 (321)
T KOG0148|consen 135 RTNWATRKP 143 (321)
T ss_pred eccccccCc
Confidence 999998776
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=4.1e-11 Score=117.54 Aligned_cols=77 Identities=26% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceec
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF--NNKDFH 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l--ng~~l~ 81 (284)
|+.+|||+|||.++++++|+++|++||.|.. |.|+++ ++||||+|.++++|++||..| ++..|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~--------v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSY--------VMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 5789999999999999999999999999998 667753 479999999999999999874 678999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|.|.++..+.
T Consensus 67 g~~l~v~~s~~~~ 79 (481)
T TIGR01649 67 GQPAFFNYSTSQE 79 (481)
T ss_pred CeEEEEEecCCcc
Confidence 9999999987543
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.5e-11 Score=109.03 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=80.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++...|||-.||.+..+.||..+|..||.|.+. +++.|+.|+++|+|+||.|+++.+|+.||..|||..|.-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSa--------KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSA--------KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeee--------eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 567899999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
++|+|.+.+++...
T Consensus 355 KRLKVQLKRPkdan 368 (371)
T KOG0146|consen 355 KRLKVQLKRPKDAN 368 (371)
T ss_pred hhhhhhhcCccccC
Confidence 99999999988654
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.6e-11 Score=114.96 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=77.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-FH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~-l~ 81 (284)
.+..+|||+.|+..+||.||+++|++||.|++ |.|+++.+ +.+||||||.|.+.+.|..||+.||+.. +.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied--------~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIED--------CYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccch--------hhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 34678999999999999999999999999998 88999975 8999999999999999999999999975 44
Q ss_pred C--ceEEEEecccCCCCC
Q 023286 82 G--NLIGVFIAESRGKDD 97 (284)
Q Consensus 82 G--r~i~V~~a~~~~~~~ 97 (284)
| .+|.|++|.++.++.
T Consensus 193 Gcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQKDKD 210 (510)
T ss_pred cCCCceEEEecccCCCch
Confidence 4 789999999877654
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=8.4e-11 Score=90.71 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=70.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+..|||.|||.++|.++..++|.+||.|.. |+|-..++ .+|-|||.|++..+|.+|++.|++..+.++-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQ--------IRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQ--------IRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEE--------EEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 567999999999999999999999999998 77776654 6789999999999999999999999999999
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
|.|-+-.+.
T Consensus 87 l~vlyyq~~ 95 (124)
T KOG0114|consen 87 LVVLYYQPE 95 (124)
T ss_pred EEEEecCHH
Confidence 999987653
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.1e-11 Score=113.04 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=75.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecC-
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-FHG- 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~-l~G- 82 (284)
.-++||+-||..++|.||+++|++||.|.+ |.|++||.|+.++|||||.|.+.++|.+|+..|+... |-|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~e--------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYE--------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeE--------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 457999999999999999999999999998 8899999999999999999999999999999998764 433
Q ss_pred -ceEEEEecccCCCC
Q 023286 83 -NLIGVFIAESRGKD 96 (284)
Q Consensus 83 -r~i~V~~a~~~~~~ 96 (284)
++|.|++|.....+
T Consensus 106 ~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 106 HHPVQVKYADGERER 120 (510)
T ss_pred Ccceeecccchhhhc
Confidence 88999999865544
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=84.75 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=55.4
Q ss_pred HHHHHHHHh----ccCCeeecCCCCCCcEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEE
Q 023286 19 EDMLAEYFG----TIGLLKKDKRTGRPKVW-LYRDKTT--NEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVF 88 (284)
Q Consensus 19 e~dL~~~F~----~~G~v~~~~~tg~p~V~-i~~dk~t--g~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~ 88 (284)
+++|+++|. +||.|.. |. |+.++.+ +.++||+||+|.+.++|++||..||+..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~--------v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGK--------INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeE--------EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 9999987 63 7777777 8999999999999999999999999999999998863
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=3.3e-10 Score=106.45 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=74.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHh-ccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~-~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+||.|||+++.+.+|+++|. +.|+|.. |.|+.|. ++++||+|.|+|+++|.+++|++.||.+++.|+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~y--------veLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEY--------VELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEe--------eeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 45699999999999999999996 6899998 8899987 599999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
+|+|+.....+.
T Consensus 115 ~l~vKEd~d~q~ 126 (608)
T KOG4212|consen 115 ELVVKEDHDEQR 126 (608)
T ss_pred eEEEeccCchhh
Confidence 999998765443
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.1e-10 Score=101.62 Aligned_cols=80 Identities=29% Similarity=0.386 Sum_probs=76.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
..|||-||.++++|.-|.++|.+||.|.. |+|++|..|.+.|||+||++.+-++|..||..|||..+.++.|
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~n--------VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTN--------VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceee--------EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 47999999999999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred EEEecccC
Q 023286 86 GVFIAESR 93 (284)
Q Consensus 86 ~V~~a~~~ 93 (284)
.|.+...+
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99997654
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.6e-10 Score=111.09 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=75.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|+|.|||+.+.+.+|+.+|++||.|.. |.|++.++ ++..|||||+|....+|..||+.||+.+|+|+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E--------i~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR 186 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVE--------IVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR 186 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEE--------EEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCc
Confidence 3568999999999999999999999999998 88998776 55569999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
+|.|.||-++..
T Consensus 187 ~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 187 PVAVDWAVDKDT 198 (678)
T ss_pred eeEEeeeccccc
Confidence 999999987654
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-10 Score=107.26 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=82.2
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|++|.+.|||--|.+-+|.+||+-+|+.||.|.+ +.|++|+.|+.+-.||||+|++.+++++|.-.|++..|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s--------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS--------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhccccee--------eeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 5788999999999999999999999999999998 67999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
++++|+|.++++-.+
T Consensus 307 DDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 307 DDRRIHVDFSQSVSK 321 (479)
T ss_pred ccceEEeehhhhhhh
Confidence 999999999886544
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.2e-10 Score=110.09 Aligned_cols=82 Identities=33% Similarity=0.440 Sum_probs=74.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-c
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF-----NN-K 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l-----ng-~ 78 (284)
..+|||.|||+++|+++|.++|++||.|.. +.|+.++.|+.++|.|||.|.+..+|+.||+.. .+ .
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~y--------a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKY--------AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhcccee--------EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 379999999999999999999999999998 679999999999999999999999999999866 23 5
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.|+|+.|+|.+|-++.
T Consensus 364 ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 364 LLDGRLLKVTLAVTRK 379 (678)
T ss_pred EEeccEEeeeeccchH
Confidence 6889999999987643
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.11 E-value=7.5e-10 Score=105.83 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=67.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||.|||+++++++|+++|.+||.|+... |.+.. ..++...|+||+|.+.++++.||+.- -..|.+++|
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~------I~vr~--~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl 359 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGG------IQVRS--PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKL 359 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccc------eEEec--cCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeE
Confidence 4599999999999999999999999999843 43332 22444499999999999999999854 667889999
Q ss_pred EEEecccCCCC
Q 023286 86 GVFIAESRGKD 96 (284)
Q Consensus 86 ~V~~a~~~~~~ 96 (284)
.|+..++....
T Consensus 360 ~Veek~~~~~g 370 (419)
T KOG0116|consen 360 NVEEKRPGFRG 370 (419)
T ss_pred EEEeccccccc
Confidence 99998876554
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=4.2e-10 Score=77.83 Aligned_cols=56 Identities=30% Similarity=0.495 Sum_probs=49.0
Q ss_pred HHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEec
Q 023286 22 LAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIA 90 (284)
Q Consensus 22 L~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a 90 (284)
|.++|++||.|.. |.+..++ +++|||+|.+.++|+.|++.||+..|.|++|+|++|
T Consensus 1 L~~~f~~fG~V~~--------i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--------IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEE--------EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999987 6665443 589999999999999999999999999999999986
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=6.3e-11 Score=109.08 Aligned_cols=76 Identities=33% Similarity=0.370 Sum_probs=73.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|||+.|.+++.|+.|+..|..||.|++ |.+..|+.|++.||||||+|+-++.|+.|++.||+..+.|+.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKS--------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcce--------eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccc
Confidence 57999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred EEEe
Q 023286 86 GVFI 89 (284)
Q Consensus 86 ~V~~ 89 (284)
+|..
T Consensus 186 KVgr 189 (544)
T KOG0124|consen 186 KVGR 189 (544)
T ss_pred cccC
Confidence 9985
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.10 E-value=1.2e-10 Score=112.09 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=76.0
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
.|||+||..++++++|+.+|+.||.|.. |.+++|.+||+++||+||+|.+.+.|.+|++.||+.+|-|+.|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~--------v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIEN--------VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCccccee--------eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEE
Confidence 3899999999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q 023286 87 VFIAESRGK 95 (284)
Q Consensus 87 V~~a~~~~~ 95 (284)
|.....+..
T Consensus 352 V~~v~~r~~ 360 (549)
T KOG0147|consen 352 VSVVTERVD 360 (549)
T ss_pred EEEeeeecc
Confidence 998765544
No 61
>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]
Probab=99.07 E-value=1.2e-10 Score=105.07 Aligned_cols=98 Identities=26% Similarity=0.526 Sum_probs=66.6
Q ss_pred ccCCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCC----CCCC-----C-------------CCCC------
Q 023286 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRA----GGRG-----R-------------GRAG------ 194 (284)
Q Consensus 143 ~~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~----gg~~-----~-------------g~~~------ 194 (284)
.-+.|||.|+ .|.++||++|..|++|+.+++.+..-..... .... . ..+.
T Consensus 135 ~~~~GDW~Cp--~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~~~~~~ 212 (280)
T KOG4198|consen 135 PWRSGDWECP--GCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEMSESRV 212 (280)
T ss_pred CccccCcccC--CCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCccccccc
Confidence 3478999999 9999999999999999999998653111000 0000 0 0000
Q ss_pred ---CCC-C------CCCCCCCCCCCCCCCCceecCCCCCeeecccccCccCCCCCCCC
Q 023286 195 ---NES-G------SQGRQIGAATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 195 ---~~~-~------~~~~~~~~~~~~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
..- . ......+......+++||.|..|.+.||.+|..|++|..+++.-
T Consensus 213 d~~~~~~~~~~~~e~~~~~~sr~s~~~~dgdw~~~s~~~~~~r~r~a~~~c~~~~~~~ 270 (280)
T KOG4198|consen 213 DGADVKGNFSSDDESRLEPLSRGSKSSRDGDWMCESCKAENFRRRNACLKCISPRGSF 270 (280)
T ss_pred ccccccccccccccccccccccCcccccCCCcccccccchhhhhhhhhhccccCcccc
Confidence 000 0 00112334455678999999999999999999999999877664
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.06 E-value=3.1e-10 Score=95.72 Aligned_cols=84 Identities=26% Similarity=0.312 Sum_probs=77.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+..|||+||.++++|..|.+.|+.||.+... -+|+++..|+.+++|+||.|.+.+.+.+||..+|+..+..++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~-------P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~ 168 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISP-------PKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRP 168 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccC-------CcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCc
Confidence 4689999999999999999999999998763 358899999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|+++..+..
T Consensus 169 itv~ya~k~~~ 179 (203)
T KOG0131|consen 169 ITVSYAFKKDT 179 (203)
T ss_pred eEEEEEEecCC
Confidence 99999987654
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=4.5e-10 Score=100.83 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=68.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||+|||..+++.+|+.+|++||.|.+ +.|+++ |+||..++...|+.||..|++.+|+|..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlE--------CDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLE--------CDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEe--------eeeecc--------cceEEeecccccHHHHhhcccceecceEE
Confidence 57999999999999999999999999998 557654 89999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|+-++.+.+
T Consensus 67 nVeaSksKsk 76 (346)
T KOG0109|consen 67 NVEASKSKSK 76 (346)
T ss_pred EEEeccccCC
Confidence 9999987743
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.00 E-value=5.8e-10 Score=109.54 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=61.8
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCC--CCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRT--GRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~t--g~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
+.+..+|||+|||+.+|+++|+++|.++......... ..+.+.+. ..+.++||||+|.++++|+.||. |++..
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~----~~~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN----INKEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE----ECCCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 3456799999999999999999999986322110000 01111122 24467999999999999999995 99999
Q ss_pred ecCceEEEEec
Q 023286 80 FHGNLIGVFIA 90 (284)
Q Consensus 80 l~Gr~i~V~~a 90 (284)
|.|+.|+|...
T Consensus 247 ~~g~~l~v~r~ 257 (509)
T TIGR01642 247 YSNVFLKIRRP 257 (509)
T ss_pred eeCceeEecCc
Confidence 99999998654
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=93.66 Aligned_cols=81 Identities=32% Similarity=0.459 Sum_probs=74.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhcc-CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTI-GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~-G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+||..||.-+.+.+|..+|.+| |.|.. +++.+++.||.++|||||+|++++.|+-|-+.||++.|.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r--------~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTR--------FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEE--------EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 4568999999999999999999998 66665 78889999999999999999999999999999999999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|.+.+..+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999998776
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.94 E-value=2.5e-09 Score=93.03 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=72.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHH----HHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 3 MANGSVYVCNLPHGTDEDMLAE----YFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~----~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
.++.||||.||+..+..++|+. +|++||.|.. |...+ |.+.+|-|||.|.+++.|-.|+..|+|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--------I~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--------ISAFK---TPKMRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEE--------EEecC---CCCccCceEEEecChhHHHHHHHHhcCC
Confidence 4566999999999999999987 9999999876 44433 5689999999999999999999999999
Q ss_pred eecCceEEEEecccCCC
Q 023286 79 DFHGNLIGVFIAESRGK 95 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~~ 95 (284)
.+.|+.|+|.||+.+..
T Consensus 76 pFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 76 PFYGKPMRIQYAKSDSD 92 (221)
T ss_pred cccCchhheecccCccc
Confidence 99999999999987654
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.87 E-value=3.7e-09 Score=97.63 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=78.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||++||.++++++|+++|.+||.|.. +.++.|..+.++++|+||+|.+++++.+++. ..-+.|+++.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~--------~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~ 167 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVAD--------VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKK 167 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEe--------eEEeecccccccccceeeEeccccccceecc-cceeeecCce
Confidence 458999999999999999999999998877 7799999999999999999999999999986 6778899999
Q ss_pred EEEEecccCCCCCcc
Q 023286 85 IGVFIAESRGKDDHA 99 (284)
Q Consensus 85 i~V~~a~~~~~~~~~ 99 (284)
+.|..|.++......
T Consensus 168 vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 168 VEVKRAIPKEVMQST 182 (311)
T ss_pred eeEeeccchhhcccc
Confidence 999999998765543
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.9e-09 Score=97.41 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=72.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
.+.|||.||+++++..+|.++|+.||.|.+ ++|..+.. | ++|| ||+|+++++|++||+.+||..+.++.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS--------~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILS--------CKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeE--------EEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 455999999999999999999999999999 77888874 4 9999 99999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|.....+..
T Consensus 145 i~vg~~~~~~e 155 (369)
T KOG0123|consen 145 IYVGLFERKEE 155 (369)
T ss_pred eEEeeccchhh
Confidence 99988876554
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=3.6e-09 Score=97.74 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=75.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||++|+++++++.|+++|.+||+|.. +.+++|+.|+.+++|+||+|++++...++|. ..-+.|+++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d--------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD--------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee--------EEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence 5679999999999999999999999999998 6799999999999999999999999998886 345679999
Q ss_pred eEEEEecccCCCC
Q 023286 84 LIGVFIAESRGKD 96 (284)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (284)
.|.++.|.++...
T Consensus 76 ~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 76 SVEPKRAVSREDQ 88 (311)
T ss_pred cccceeccCcccc
Confidence 9999999877654
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=7.8e-09 Score=102.20 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=75.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|+|.|||+..+..+|+.+|..||.|.+ |+|+.....+.++||+||+|.++.+|..|+..|..+.|.|+.|
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlks--------vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrL 685 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKS--------VRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRL 685 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceee--------eccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhh
Confidence 58999999999999999999999999998 7888776677889999999999999999999999999999999
Q ss_pred EEEecccCC
Q 023286 86 GVFIAESRG 94 (284)
Q Consensus 86 ~V~~a~~~~ 94 (284)
.++||....
T Consensus 686 VLEwA~~d~ 694 (725)
T KOG0110|consen 686 VLEWAKSDN 694 (725)
T ss_pred heehhccch
Confidence 999998543
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.71 E-value=4.8e-08 Score=87.18 Aligned_cols=82 Identities=29% Similarity=0.389 Sum_probs=73.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+++|+|.|||+.|+++||+++|.+|+.++. +.|-.++ +|.+.|.|-|+|...++|.+||+.|++..|+|+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r--------~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKR--------VAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceE--------EeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 478999999999999999999999997776 5566666 6999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|++.+..+...
T Consensus 154 mk~~~i~~~~~ 164 (243)
T KOG0533|consen 154 MKIEIISSPSQ 164 (243)
T ss_pred eeeEEecCccc
Confidence 99998775543
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=2.2e-08 Score=90.12 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=70.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+++|+|+||.+.++..||+..|.+||.|.+ +.|++ +|+||.|+-.++|..||..|++.+|.|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpvie--------cdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIE--------CDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCcee--------eeeec--------ceeEEEEeeccchHHHHhcccccccccc
Confidence 5679999999999999999999999999987 44654 4899999999999999999999999999
Q ss_pred eEEEEecccCCCCC
Q 023286 84 LIGVFIAESRGKDD 97 (284)
Q Consensus 84 ~i~V~~a~~~~~~~ 97 (284)
+|+|.++.++-...
T Consensus 141 ~m~vq~stsrlrta 154 (346)
T KOG0109|consen 141 RMHVQLSTSRLRTA 154 (346)
T ss_pred eeeeeeeccccccC
Confidence 99999998776544
No 73
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=8.2e-08 Score=74.18 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=69.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH---- 81 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~---- 81 (284)
+||+|.|||...|+++|.+++...-.-.-+- +.|+.|..+..+.|||||.|.+++.|....+.+++..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF------~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDF------FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceE------EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 6899999999999999999987642212221 789999999999999999999999999999999999886
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
.+...|.+|+-+.
T Consensus 76 ~Kvc~i~yAriQG 88 (97)
T PF04059_consen 76 KKVCEISYARIQG 88 (97)
T ss_pred CcEEEEehhHhhC
Confidence 4677888887654
No 74
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=3.4e-08 Score=95.65 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=74.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|||.+|+..+...||+.+|++||.|+-+ +|+.+-.+--.++|+||++.+.++|.++|+.|+-.+|.|+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGA--------KVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGA--------KVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceece--------eeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 4579999999999999999999999999874 47777666678899999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|+.++....
T Consensus 477 ISVEkaKNEp~ 487 (940)
T KOG4661|consen 477 ISVEKAKNEPG 487 (940)
T ss_pred eeeeecccCcc
Confidence 99999886543
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.71 E-value=2.8e-08 Score=93.63 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=68.0
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+.+.++|||.|||.+.|+..|++-|..||.|..+. |+ +.++++| .|.|.++++|+.|+..|++..|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yad--------im---e~GkskG--VVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYAD--------IM---ENGKSKG--VVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhh--------hh---ccCCccc--eEEecCHHHHHHHHHHhccCccc
Confidence 56788999999999999999999999999998744 43 3477777 89999999999999999999999
Q ss_pred CceEEEEec
Q 023286 82 GNLIGVFIA 90 (284)
Q Consensus 82 Gr~i~V~~a 90 (284)
|+.|+|.|.
T Consensus 600 Gr~I~V~y~ 608 (608)
T KOG4212|consen 600 GRNIKVTYF 608 (608)
T ss_pred CceeeeeeC
Confidence 999999874
No 76
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.70 E-value=7.8e-09 Score=62.75 Aligned_cols=30 Identities=43% Similarity=1.032 Sum_probs=24.7
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++++|.|+.|.++|++.+..|..|+++||.
T Consensus 1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 468999999999999999999999999984
No 77
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.70 E-value=3e-08 Score=98.89 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=68.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
++||||++|+.+++|.||..+|+.||.|.+ |.++- ++++|||.+....+|++||..|....+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqS--------i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~ 486 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQS--------IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKT 486 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhccccee--------Eeecc------CCceeEEEEeehhHHHHHHHHHhccccccee
Confidence 689999999999999999999999999998 54543 5689999999999999999999999999999
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|+|.|+..+.
T Consensus 487 Iki~Wa~g~G 496 (894)
T KOG0132|consen 487 IKIAWAVGKG 496 (894)
T ss_pred eEEeeeccCC
Confidence 9999987543
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.3e-08 Score=97.02 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=68.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t---g~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++|||.||++++|.++|+.+|...|.|.+ |.|...+.- -.+.||+||+|.++++|+.|+..|+++.|+|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS--------~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLS--------IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEE--------EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 34999999999999999999999999988 555544321 2356999999999999999999999999999
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
+.|.|+++.
T Consensus 588 H~l~lk~S~ 596 (725)
T KOG0110|consen 588 HKLELKISE 596 (725)
T ss_pred ceEEEEecc
Confidence 999999998
No 79
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.2e-08 Score=89.23 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=73.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-C
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-G 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~-G 82 (284)
+..+|||+.|...-+|+|++.+|..||.|.+ +.+.+..+ +.+||+|||.|.+..+|+.||..|++...+ |
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e--------~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEE--------CTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcce--------eEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 4578999999999999999999999999998 66777764 899999999999999999999999998654 3
Q ss_pred --ceEEEEecccCCC
Q 023286 83 --NLIGVFIAESRGK 95 (284)
Q Consensus 83 --r~i~V~~a~~~~~ 95 (284)
..|.|+++....+
T Consensus 89 ASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKE 103 (371)
T ss_pred CccceEEEeccchHH
Confidence 6799999986544
No 80
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=6.6e-08 Score=88.85 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=64.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH-hCCceecCc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW-FNNKDFHGN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~-lng~~l~Gr 83 (284)
-.+|||++|-..++|.+|+++|.+||.|.+ |.++..+ ++|||+|.+.++|+.|.+. ++-..|+|.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--------i~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--------IRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeee--------EEeeccc------ccceeeehhhHHHHHHHHhhcceeeecce
Confidence 368999999999999999999999999998 6665533 5999999999999998875 455678999
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
+|+|.+..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999988
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.2e-08 Score=91.55 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=70.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
..|||+ +++|+..|.++|+.+|.|.+ |+|.+|- | +-|||||.|.++++|++||+.||...|.|++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s--------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLS--------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCcee--------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 468998 99999999999999999998 8899998 7 99999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|.++.....
T Consensus 68 rim~s~rd~~ 77 (369)
T KOG0123|consen 68 RIMWSQRDPS 77 (369)
T ss_pred EeehhccCCc
Confidence 9999875543
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=8.7e-08 Score=88.62 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=74.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||..+.++.+|+||+.+|+.||.|.. +.+-+.+.+...|||+||+|.+..+...||..||-..|.|.-|
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~--------C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVK--------CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceee--------EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 58999999999999999999999999998 7799999999999999999999999999999999999999999
Q ss_pred EEEecccC
Q 023286 86 GVFIAESR 93 (284)
Q Consensus 86 ~V~~a~~~ 93 (284)
+|-.+-..
T Consensus 283 RVGk~vTP 290 (544)
T KOG0124|consen 283 RVGKCVTP 290 (544)
T ss_pred ecccccCC
Confidence 98876544
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=80.31 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=67.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec---
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH--- 81 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~--- 81 (284)
..||||.+||.++...+|..+|..|--.+..- ++ +.++...-.+-+|||+|.+..+|++|+..|||..|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgsl------LK-~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSL------LK-YTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCcccee------ee-eccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 47999999999999999999999874444321 22 223322223469999999999999999999999998
Q ss_pred CceEEEEecccCCCCC
Q 023286 82 GNLIGVFIAESRGKDD 97 (284)
Q Consensus 82 Gr~i~V~~a~~~~~~~ 97 (284)
+.+|+|++|+...+..
T Consensus 107 ~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRK 122 (284)
T ss_pred CceeEeeehhcCcccc
Confidence 6899999999776644
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=2.9e-08 Score=86.17 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=69.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...||||.||...++|+.|.++|.+.|.|.. |.|..+++ ++.| ||||.|.++.++.-|++.+|+..+.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k--------v~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK--------VGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE--------EeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 4579999999999999999999999999987 66776665 5566 999999999999999999999999999
Q ss_pred eEEEEecc
Q 023286 84 LIGVFIAE 91 (284)
Q Consensus 84 ~i~V~~a~ 91 (284)
.|.|.+-.
T Consensus 78 e~q~~~r~ 85 (267)
T KOG4454|consen 78 EEQRTLRC 85 (267)
T ss_pred hhhccccc
Confidence 88888744
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.49 E-value=3.6e-07 Score=81.47 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=76.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+...|||+|+...+|.++|+.+|+.||.|.. |.|+.++.++.+++|+||+|.+.+.++.++. |++..|.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~--------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINR--------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccc--------eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc
Confidence 45678999999999999999999999999986 7799999999999999999999999999998 99999999
Q ss_pred ceEEEEecccC
Q 023286 83 NLIGVFIAESR 93 (284)
Q Consensus 83 r~i~V~~a~~~ 93 (284)
+.|.|.+....
T Consensus 170 ~~i~vt~~r~~ 180 (231)
T KOG4209|consen 170 PAIEVTLKRTN 180 (231)
T ss_pred ccceeeeeeee
Confidence 99999998766
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.39 E-value=4.9e-07 Score=83.61 Aligned_cols=38 Identities=50% Similarity=1.085 Sum_probs=34.0
Q ss_pred CCCcccCCCCCCCCCCccCCccccccccccccCCCCCCC
Q 023286 139 VGKTWQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (284)
Q Consensus 139 ~gg~~~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~ 177 (284)
.+....+++||.|+ +.|.|.||+||..|++|+++||..
T Consensus 209 ~~~~~~~d~Dw~c~-~~c~N~nfa~r~~cnrck~~Kp~~ 246 (351)
T KOG1995|consen 209 GGNVQDEDGDWDCP-PSCGNRNFAWREECNRCKAPKPER 246 (351)
T ss_pred Cccccccccccccc-ccccccccccccccccccCCCccc
Confidence 34556788999999 899999999999999999999866
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.5e-07 Score=80.15 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=63.6
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
.|||++||+.+.+.+|+.+|..||.+.. |.+ + .+|+||+|.++.+|..||..|++..|.+..+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d--------~~m-k-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~v 66 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPD--------ADM-K-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLV 66 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccc--------cee-e-------cccceeccCchhhhhcccchhcCceecceeee
Confidence 6999999999999999999999999987 322 1 26899999999999999999999999998888
Q ss_pred EEecccCC
Q 023286 87 VFIAESRG 94 (284)
Q Consensus 87 V~~a~~~~ 94 (284)
|+++....
T Consensus 67 ve~~r~~~ 74 (216)
T KOG0106|consen 67 VEHARGKR 74 (216)
T ss_pred eecccccc
Confidence 88887553
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=4.7e-07 Score=80.24 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+||.+-|..+++.+.|...|.+|-..... ++++++.|++++||+||.|.++.++..||..|+++.+..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~a--------kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKA--------KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhc--------cccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 45789999999999999999999999877663 4899999999999999999999999999999999999998
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|++..+.-+
T Consensus 261 piklRkS~wk 270 (290)
T KOG0226|consen 261 PIKLRKSEWK 270 (290)
T ss_pred hhHhhhhhHH
Confidence 8887665433
No 89
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=98.34 E-value=2e-07 Score=54.58 Aligned_cols=26 Identities=42% Similarity=1.099 Sum_probs=24.4
Q ss_pred CceecCCCCCeeecccccCccCCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNTNK 239 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~ 239 (284)
+||.|+.|.++||+.+..|++|++|.
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p~ 26 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAPX 26 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCcC
Confidence 69999999999999999999999873
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.26 E-value=2.8e-06 Score=81.45 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=63.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|-+.+||+++|++||.+||+.++. .. ++..+.++++.|.|||+|.+++++++||+ .+-..+..+-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I-~~----------~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RY 77 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGI-EN----------LEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRY 77 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCce-eE----------EEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCce
Confidence 456778899999999999999998874 33 45556779999999999999999999998 5666677788
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
|.|..+...
T Consensus 78 IEVf~~~~~ 86 (510)
T KOG4211|consen 78 IEVFTAGGA 86 (510)
T ss_pred EEEEccCCc
Confidence 888877543
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=3.9e-06 Score=83.44 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK---TTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk---~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
+.++.|||+||++.++++.|...|..||.|.. |+|+.-+ +....+-++||.|-+..+|++|++.|++..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlas--------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLAS--------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccc--------eeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 45789999999999999999999999999998 5555432 334567799999999999999999999999
Q ss_pred ecCceEEEEecccC
Q 023286 80 FHGNLIGVFIAESR 93 (284)
Q Consensus 80 l~Gr~i~V~~a~~~ 93 (284)
+....|++-+++.-
T Consensus 244 v~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 244 VMEYEMKLGWGKAV 257 (877)
T ss_pred eeeeeeeecccccc
Confidence 99999999998643
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.13 E-value=9.7e-06 Score=77.79 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=65.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
....|-|.+||+.+|++||.+||+..-.+... |.++.++. +++.|.|||+|++.+.|++||. -+...|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~g-------i~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhR 172 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDG-------ILLPMDQR-GRPTGEAFVQFESQESAEIALG-RHRENIGHR 172 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccc-------eeeeccCC-CCcccceEEEecCHHHHHHHHH-HHHHhhccc
Confidence 34678999999999999999999987766542 66777764 7799999999999999999997 444557777
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
-|.|..+..
T Consensus 173 YIEvF~Ss~ 181 (510)
T KOG4211|consen 173 YIEVFRSSR 181 (510)
T ss_pred eEEeehhHH
Confidence 788887654
No 93
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.09 E-value=8.1e-07 Score=53.80 Aligned_cols=29 Identities=52% Similarity=1.195 Sum_probs=23.9
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
++|+|.|+ .|.+.|+..+..|+.|+++||
T Consensus 1 k~g~W~C~--~C~~~N~~~~~~C~~C~~~rp 29 (30)
T PF00641_consen 1 KEGDWKCP--SCTFMNPASRSKCVACGAPRP 29 (30)
T ss_dssp -SSSEEET--TTTEEEESSSSB-TTT--BTT
T ss_pred CCcCccCC--CCcCCchHHhhhhhCcCCCCc
Confidence 46899998 999999999999999999997
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=2.9e-06 Score=82.32 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=62.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|+|-|||..|++++|+.+|+.||+|.. |+.. -..++..||+|.|+-+|+.|++.|+..+|.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--------ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--------IRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhh--------hhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 5679999999999999999999999999987 4433 34568999999999999999999999999998
Q ss_pred eEE
Q 023286 84 LIG 86 (284)
Q Consensus 84 ~i~ 86 (284)
.|+
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 887
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=3.3e-06 Score=82.23 Aligned_cols=83 Identities=27% Similarity=0.303 Sum_probs=77.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||++||..++++.+.+++..||.+.. ..++.|..++.+++|||.+|.++.-...|+..|||+.+.+++
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~--------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKA--------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchh--------heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 467999999999999999999999999998 779999999999999999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|..|.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99999875443
No 96
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.04 E-value=4.6e-06 Score=76.96 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=67.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
..+||+||-+.+|++||.+.+...|.-.... ++++.++.+|++||||+|...+..+.++.|+.|.-++|.|..-
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFAD------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhh------hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 4689999999999999999998877654333 7889999999999999999999999999999999999998665
Q ss_pred EEEe
Q 023286 86 GVFI 89 (284)
Q Consensus 86 ~V~~ 89 (284)
.|..
T Consensus 155 ~V~~ 158 (498)
T KOG4849|consen 155 TVLS 158 (498)
T ss_pred eeec
Confidence 5544
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.99 E-value=4.7e-05 Score=71.70 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=69.0
Q ss_pred CcEEEeccCC-CCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 5 NGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 5 ~~tIyV~nLp-~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..|.|.||. ..+|.+.|..+|..||.|.. |+|+.++. --|+|+|.+...|+.|++.|++..|.|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqR--------Vkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQR--------VKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGK 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEE--------EEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCc
Confidence 4778888887 67899999999999999998 88888764 3599999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
+|+|.+++-..-
T Consensus 364 ~lrvt~SKH~~v 375 (492)
T KOG1190|consen 364 KLRVTLSKHTNV 375 (492)
T ss_pred eEEEeeccCccc
Confidence 999999985543
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.94 E-value=8.4e-06 Score=74.92 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=75.6
Q ss_pred CCcEEE-eccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVY-VCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIy-V~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++.++| |.+|+.++++++|..+|..++.|.. |++..++.++..++|+||+|.+...+..++.. +...+.+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~--------~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITS--------VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG 253 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCccee--------eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC
Confidence 345677 9999999999999999999999998 88999999999999999999999999999986 7888999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+++.|.+..+....
T Consensus 254 ~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 254 RPLRLEEDEPRPKS 267 (285)
T ss_pred cccccccCCCCccc
Confidence 99999998877654
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.90 E-value=4.6e-05 Score=66.68 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=67.7
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|.+++..+|+.|||..++.+.|..+|.+|.-... |+++..+ ++.|||+|.+...|..|...+++..|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ke--------ir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKE--------IRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccce--------eEeccCC-----CceeEEecchhhhhHHHhhhhcccee
Confidence 4578889999999999999999999999988777 7777654 46999999999999999999999888
Q ss_pred c-CceEEEEecc
Q 023286 81 H-GNLIGVFIAE 91 (284)
Q Consensus 81 ~-Gr~i~V~~a~ 91 (284)
- ...|.|.+++
T Consensus 209 t~~~~m~i~~a~ 220 (221)
T KOG4206|consen 209 TKKNTMQITFAK 220 (221)
T ss_pred ccCceEEecccC
Confidence 7 7888888775
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.88 E-value=6.5e-06 Score=79.81 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=73.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+||+..|+..++..+|+++|+.+|.|.. |+|+.|+.+..++|.+||+|.+++.+..||. |.|..++|.+|
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrd--------VriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRD--------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcce--------eEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 57888889999999999999999999988 8999999999999999999999999999995 99999999999
Q ss_pred EEEecccC
Q 023286 86 GVFIAESR 93 (284)
Q Consensus 86 ~V~~a~~~ 93 (284)
.|......
T Consensus 251 ~vq~sEae 258 (549)
T KOG0147|consen 251 IVQLSEAE 258 (549)
T ss_pred EecccHHH
Confidence 99986643
No 101
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.83 E-value=9.4e-06 Score=47.34 Aligned_cols=25 Identities=52% Similarity=1.278 Sum_probs=23.8
Q ss_pred CCCCCCCCccCCccccccccccccCCC
Q 023286 147 GDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (284)
Q Consensus 147 GDW~C~~~~Cg~~NF~~R~~C~rC~~~ 173 (284)
|||.|+ .|.+.||..+..|++|+.|
T Consensus 1 g~W~C~--~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECP--ACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCC--CCCCcChhhhccccccCCc
Confidence 699999 8999999999999999986
No 102
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.77 E-value=2.5e-05 Score=68.33 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=51.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
-+||||.||..++||++|+.+|+.|--... ++| +.+ .| ...|||+|++.+.|..||..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~--------l~~-~~~-~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHI--------LKI-RAR-GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceE--------EEE-ecC-CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 468999999999999999999999865543 333 333 13 34899999999999999999998765
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.75 E-value=0.00014 Score=54.48 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=46.8
Q ss_pred cEEEeccCCCCCCHHHHH----HHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 6 GSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~----~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+.|||.|||.+.+...|+ +++..+|--+ +.|. .+-|+|.|.+++.|..|.+.|++..+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v~--------~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSVS--------GGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEEe--------CCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 469999999999987765 4555675432 2232 257999999999999999999999999
Q ss_pred CceEEEEecccC
Q 023286 82 GNLIGVFIAESR 93 (284)
Q Consensus 82 Gr~i~V~~a~~~ 93 (284)
|.+|.|.+....
T Consensus 66 G~kI~v~~~~~~ 77 (90)
T PF11608_consen 66 GNKISVSFSPKN 77 (90)
T ss_dssp SS--EEESS--S
T ss_pred cceEEEEEcCCc
Confidence 999999998543
No 104
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=5.8e-05 Score=66.33 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=60.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|+|.+|+..+.+.+|.++|.++|.+... +. .++++||+|++.++|..||+.|++..|.++.
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~---------~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~ 162 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV---------DA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRR 162 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchh---------hh-------hccccceeehhhhhhhhcchhccchhhcCce
Confidence 5678999999999999999999999998542 11 3468999999999999999999999999999
Q ss_pred EEEEe
Q 023286 85 IGVFI 89 (284)
Q Consensus 85 i~V~~ 89 (284)
|.+..
T Consensus 163 l~~~~ 167 (216)
T KOG0106|consen 163 ISVEK 167 (216)
T ss_pred eeecc
Confidence 99943
No 105
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.53 E-value=0.00028 Score=70.50 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=66.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
+.|-+.|+|.+++-+||.+||..|-.+..+ |.|-++ +.|...|.+.|.|++.++|.+|...|++..|..++|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s-------I~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNS-------IRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCc-------eeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 478899999999999999999999887764 555444 459999999999999999999999999999999999
Q ss_pred EEEe
Q 023286 86 GVFI 89 (284)
Q Consensus 86 ~V~~ 89 (284)
+|.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8865
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.46 E-value=0.00025 Score=55.70 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=42.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----ee
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK-----DF 80 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~-----~l 80 (284)
..|+|.+++..++.++|+++|++|+.|.. |.+.+.- -.|||.|.++++|+.|++.+.-. .|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y--------VD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i 67 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAY--------VDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKI 67 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEE--------EE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-T
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcce--------EEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEE
Confidence 35889999999999999999999998876 4444322 27999999999999999866433 45
Q ss_pred cCceEEEEec
Q 023286 81 HGNLIGVFIA 90 (284)
Q Consensus 81 ~Gr~i~V~~a 90 (284)
.+..+.+++.
T Consensus 68 ~~~~~~~~vL 77 (105)
T PF08777_consen 68 KGKEVTLEVL 77 (105)
T ss_dssp TSSSEEEE--
T ss_pred cCceEEEEEC
Confidence 6666666653
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.00025 Score=65.44 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=62.1
Q ss_pred CCcEEEeccCCCCCCHHH----H--HHHHhccCCeeecCCCCCCcEEEeecCCCC---CcccE--EEEEeCCHHHHHHHH
Q 023286 4 ANGSVYVCNLPHGTDEDM----L--AEYFGTIGLLKKDKRTGRPKVWLYRDKTTN---EYKGD--ATVTYEDPHAALAAV 72 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~d----L--~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg---~~rGf--aFV~F~s~e~A~~Ai 72 (284)
+..-|||-+||+.+..++ | .++|.+||.|.. |+.++.|- ...+. .||+|.+.++|..+|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K----------IvvNkkt~s~nst~~h~gvYITy~~kedAarcI 182 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK----------IVVNKKTSSLNSTASHAGVYITYSTKEDAARCI 182 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeE----------EEecccccccccccccceEEEEecchHHHHHHH
Confidence 345789999999888776 3 488999999976 45455441 11122 399999999999999
Q ss_pred HHhCCceecCceEEEEecccC
Q 023286 73 EWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 73 ~~lng~~l~Gr~i~V~~a~~~ 93 (284)
...++..++|+.|+..|-..+
T Consensus 183 a~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 183 AEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred HHhccccccCceEeeecCchH
Confidence 999999999999999986543
No 108
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.43 E-value=0.00024 Score=67.02 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=64.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+|+.+|.+.|||++++|++|+..|.+-|..... . ... .+.+-+|++.+.++++|..|+..++.+.+..
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vka-------f-kff----~kd~kmal~q~~sveeA~~ali~~hnh~lge 479 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA-------F-KFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGE 479 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEe-------e-eec----CCCcceeecccCChhHhhhhccccccccCCC
Confidence 578899999999999999999999998876542 1 111 2344599999999999999999999888874
Q ss_pred -ceEEEEeccc
Q 023286 83 -NLIGVFIAES 92 (284)
Q Consensus 83 -r~i~V~~a~~ 92 (284)
..|+|++++.
T Consensus 480 n~hlRvSFSks 490 (492)
T KOG1190|consen 480 NHHLRVSFSKS 490 (492)
T ss_pred CceEEEEeecc
Confidence 5899999875
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00048 Score=67.41 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=61.4
Q ss_pred CcEEEeccCCCCCC--H----HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 5 NGSVYVCNLPHGTD--E----DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~t--e----~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
.+.|+|.|+|.--. . .-|..+|+++|.+.. +.++.+.+++ .+||.|++|.+..+|+.|++.|||+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--------~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--------MYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--------eeeccCccCC-eeeEEEEEecChhhHHHHHHhcccc
Confidence 45789999984322 2 346688999998876 6677777655 9999999999999999999999999
Q ss_pred eec-CceEEEEec
Q 023286 79 DFH-GNLIGVFIA 90 (284)
Q Consensus 79 ~l~-Gr~i~V~~a 90 (284)
.|+ .+++.|..-
T Consensus 129 ~ldknHtf~v~~f 141 (698)
T KOG2314|consen 129 RLDKNHTFFVRLF 141 (698)
T ss_pred eecccceEEeehh
Confidence 887 677777653
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.29 E-value=0.0012 Score=54.53 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=52.7
Q ss_pred CCCCCcEEEeccCC------CCCCH---HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 023286 1 MTMANGSVYVCNLP------HGTDE---DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (284)
Q Consensus 1 m~~~~~tIyV~nLp------~~~te---~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~A 71 (284)
|-++..||.|.=+. ....+ .+|.+.|.+||.+.- |+++-+ --.|+|.+-++|.+|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvL--------vRfv~~--------~mwVTF~dg~sALaa 86 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVL--------VRFVGD--------TMWVTFRDGQSALAA 86 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECE--------EEEETT--------CEEEEESSCHHHHHH
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEE--------EEEeCC--------eEEEEECccHHHHHH
Confidence 45778899888776 12222 256778889998765 555543 379999999999999
Q ss_pred HHHhCCceecCceEEEEecccC
Q 023286 72 VEWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 72 i~~lng~~l~Gr~i~V~~a~~~ 93 (284)
+. +++.++.|+.|+|.+..+.
T Consensus 87 ls-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 87 LS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HH-GCCSEETTEEEEEEE----
T ss_pred Hc-cCCcEECCEEEEEEeCCcc
Confidence 97 9999999999999997753
No 111
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.11 E-value=0.0012 Score=45.28 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai 72 (284)
++.|-|.+.+++..+. |..+|.+||.|.. +.+.. ..-+.||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~--------~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVD--------IYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEE--------EEcCC------CCcEEEEEECCHHHHHhhC
Confidence 3568899999887655 4558999999987 44431 2348999999999999985
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.99 E-value=0.0011 Score=62.32 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=68.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|-+.+||+..+.+||.+||..|-.-... --|+++.+.+ |++.|.|||+|.+.+.|.+|+...+.+..+.+-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f-----~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRF-----QGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhccc-----ceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 5678999999999999999999988543321 1267777764 899999999999999999999988877777888
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|.|..+...+
T Consensus 354 iEvfp~S~ee 363 (508)
T KOG1365|consen 354 IEVFPCSVEE 363 (508)
T ss_pred EEEeeccHHH
Confidence 9998876544
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0039 Score=60.62 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=56.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHh-ccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW 74 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~-~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ 74 (284)
+..||||++||.-++.++|..+|+ -||.|.. +-|=.|++-..++|-+=|+|.+..+..+||+.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~y--------aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY--------VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEE--------EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 568999999999999999999999 7999987 55777877789999999999999999999973
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0054 Score=59.62 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=48.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeec---CCCCCccc---EEEEEeCCHHHHHHHHHHh
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD---KTTNEYKG---DATVTYEDPHAALAAVEWF 75 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~d---k~tg~~rG---faFV~F~s~e~A~~Ai~~l 75 (284)
+.+|||++||++++|+.|...|..||.+..+ .+.. +.--.++| |+|+.|+++.++++-|...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~Vd---------WP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVD---------WPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEee---------cCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 5789999999999999999999999998742 3321 11123567 9999999999888877644
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.71 E-value=0.0059 Score=57.32 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=61.4
Q ss_pred CCCcEEEeccC--CCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNL--PHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nL--p~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+++.|.+.=| -+.+|.+-|..+-...|.|.. |.|++. ++. -|.|+|++.+.|++|.+.|||..|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR--------IvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR--------IVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEE--------EEEEec--cce---eeEEeechhHHHHHHHhhcccccc
Confidence 34555554433 367888999999999999987 555543 343 599999999999999999999988
Q ss_pred cC--ceEEEEecccC
Q 023286 81 HG--NLIGVFIAESR 93 (284)
Q Consensus 81 ~G--r~i~V~~a~~~ 93 (284)
.- -+|+|+||++.
T Consensus 185 YsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPT 199 (494)
T ss_pred cccceeEEEEecCcc
Confidence 73 78999999874
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.66 E-value=0.0012 Score=58.85 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=57.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCC--------CCccc----EEEEEeCCHHHHHHHH
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT--------NEYKG----DATVTYEDPHAALAAV 72 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t--------g~~rG----faFV~F~s~e~A~~Ai 72 (284)
.-.||+++||+.+...-|+++|++||.|-. |.|-....+ +.++. -+.|+|.+...|....
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGR--------vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iA 145 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGR--------VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIA 145 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccce--------EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999976 444333322 12222 3679999999999999
Q ss_pred HHhCCceecCce
Q 023286 73 EWFNNKDFHGNL 84 (284)
Q Consensus 73 ~~lng~~l~Gr~ 84 (284)
+.||+..|.|+.
T Consensus 146 e~Lnn~~Iggkk 157 (278)
T KOG3152|consen 146 ELLNNTPIGGKK 157 (278)
T ss_pred HHhCCCccCCCC
Confidence 999999998853
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.021 Score=49.01 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=53.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..+|.|.+||++.+++||+++..+.|.|..+ .+.+| |.+.|+|...++++-||..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfa--------dv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFA--------DVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeee--------eeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3579999999999999999999999999763 35555 47999999999999999998877654
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.58 E-value=0.0061 Score=59.80 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHhccCCeeecCCCCCCcEEEeec-C--CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEeccc
Q 023286 21 MLAEYFGTIGLLKKDKRTGRPKVWLYRD-K--TTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAES 92 (284)
Q Consensus 21 dL~~~F~~~G~v~~~~~tg~p~V~i~~d-k--~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 92 (284)
+|+..+++||.|.+ |.|+++ . .-.-..|--||+|.+.++++.|++.|+|.+|.+++|...|-..
T Consensus 425 dvr~ec~k~g~v~~--------v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRS--------VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeE--------EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34455668999988 666665 1 1122345679999999999999999999999999999888653
No 119
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.57 E-value=0.016 Score=45.11 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=51.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecC------CCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK------TTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk------~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
...|.|-+.|+. ....|.++|++||.|.+. +.+.++. ..-....+-.|+|.++.+|++||. .||.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~-------~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~ 76 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEH-------FEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGT 76 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECE-------EGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEe-------ecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCe
Confidence 456788899988 456788899999999763 1010100 001133589999999999999997 8999
Q ss_pred eecCc-eEEEEeccc
Q 023286 79 DFHGN-LIGVFIAES 92 (284)
Q Consensus 79 ~l~Gr-~i~V~~a~~ 92 (284)
.|.|. .+-|.+.++
T Consensus 77 i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 77 IFSGSLMVGVKPCDP 91 (100)
T ss_dssp EETTCEEEEEEE-HH
T ss_pred EEcCcEEEEEEEcHH
Confidence 99885 556777643
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.45 E-value=0.017 Score=40.86 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l 75 (284)
...+|+|.++ .+++.++|+.+|..|-... ...+|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~-----~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEE-----GPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccC-----CCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3568999999 5678899999999981111 01127788776 4899999999999999754
No 121
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.41 E-value=0.0039 Score=59.34 Aligned_cols=67 Identities=28% Similarity=0.384 Sum_probs=54.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeec---CCC--CC--------cccEEEEEeCCHHHHH
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD---KTT--NE--------YKGDATVTYEDPHAAL 69 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~d---k~t--g~--------~rGfaFV~F~s~e~A~ 69 (284)
.++.+|.+-|||.+-.-+-|.++|..+|.|+. |+|..- +.. +. .+-+|+|+|...+.|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Iks--------IRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKS--------IRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceee--------eeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 37889999999999999999999999999998 766654 211 11 2457999999999999
Q ss_pred HHHHHhCC
Q 023286 70 AAVEWFNN 77 (284)
Q Consensus 70 ~Ai~~lng 77 (284)
+|.+.|+.
T Consensus 301 KA~e~~~~ 308 (484)
T KOG1855|consen 301 KARELLNP 308 (484)
T ss_pred HHHHhhch
Confidence 99997754
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.41 E-value=0.017 Score=54.37 Aligned_cols=78 Identities=27% Similarity=0.363 Sum_probs=66.9
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~-~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+...++|-+|... ++-+.|..+|-.||.|.. |++++.+. |-|.|++.+..+.++||..||+..+-
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~r--------vkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lf 351 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVER--------VKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLF 351 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceee--------EEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccc
Confidence 35678899999865 455778999999999998 88888763 68999999999999999999999999
Q ss_pred CceEEEEecccC
Q 023286 82 GNLIGVFIAESR 93 (284)
Q Consensus 82 Gr~i~V~~a~~~ 93 (284)
|.+|.|.+++-.
T Consensus 352 G~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 352 GGKLNVCVSKQN 363 (494)
T ss_pred cceEEEeecccc
Confidence 999999988743
No 123
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.41 E-value=0.013 Score=54.53 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=60.5
Q ss_pred CCcEEEeccCC----CCCC-------HHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023286 4 ANGSVYVCNLP----HGTD-------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (284)
Q Consensus 4 ~~~tIyV~nLp----~~~t-------e~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai 72 (284)
...+|.|.||= ...+ +++|.+.-.+||.|.. |.|+ ++ -+.|.+.|.|.+.++|..+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~--------vvv~-d~---hPdGvvtV~f~n~eeA~~ci 331 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRK--------VVVY-DR---HPDGVVTVSFRNNEEADQCI 331 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcce--------EEEe-cc---CCCceeEEEeCChHHHHHHH
Confidence 35678888863 2233 2455566778999987 5454 33 27789999999999999999
Q ss_pred HHhCCceecCceEEEEecccCC
Q 023286 73 EWFNNKDFHGNLIGVFIAESRG 94 (284)
Q Consensus 73 ~~lng~~l~Gr~i~V~~a~~~~ 94 (284)
+.|+|.-|.|+.|..++...+.
T Consensus 332 q~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 332 QTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHhcCeeecceEEEEEEeCCcc
Confidence 9999999999999998865443
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.33 E-value=0.0046 Score=63.60 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+++.++|++|+.++....|..+|..||.|.. |. .+. +++ ||+|.|+++..|++|+..|-+..|.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~--------Id--y~h--gq~--yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI--------ID--YRH--GQP--YAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCccee--------ee--ccc--CCc--ceeeecccCccchhhHHHHhcCcCCC
Confidence 46789999999999999999999999999876 32 222 343 99999999999999999999999885
Q ss_pred --ceEEEEecccCC
Q 023286 83 --NLIGVFIAESRG 94 (284)
Q Consensus 83 --r~i~V~~a~~~~ 94 (284)
+.|.|.++....
T Consensus 519 P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 519 PPRRLRVDLASPPG 532 (975)
T ss_pred CCcccccccccCCC
Confidence 789999987543
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.03 E-value=0.019 Score=54.14 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=47.5
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW 74 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ 74 (284)
.|-+.+||++.++.++.+||..--.|.. +...|..+. +..++..|.|||.|..+++|+.||..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC----CccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH
Confidence 4566799999999999999975433332 122254444 44589999999999999999999973
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.82 E-value=0.011 Score=56.33 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=58.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eecCce
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK-DFHGNL 84 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~-~l~Gr~ 84 (284)
+++|++||.+.++.+||+.+|...- +.-.. -.|+ ..+|+||++.+..-|.+|++.++++ ++.|++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~~~~g------~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-IPGSG------QFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-CCCCc------ceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 4699999999999999999997541 11100 1122 2369999999999999999999987 578999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
+.|+.+-++..
T Consensus 68 ~e~~~sv~kkq 78 (584)
T KOG2193|consen 68 QEVEHSVPKKQ 78 (584)
T ss_pred eeccchhhHHH
Confidence 99998776543
No 127
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.78 E-value=0.012 Score=58.18 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhc-cCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH- 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~-~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~- 81 (284)
.++.|||.||-.-+|.-.|+.+|.. .|.|.. +.+|+ .|..|||.|.+.++|.+.+..||+..|-
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee----------~WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE----------FWMDK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHH----------HHHHH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 4688999999999999999999995 455554 34444 4568999999999999999999998764
Q ss_pred --CceEEEEecccC
Q 023286 82 --GNLIGVFIAESR 93 (284)
Q Consensus 82 --Gr~i~V~~a~~~ 93 (284)
.+.|.|.|+...
T Consensus 509 sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 509 SNPKHLIADFVRAD 522 (718)
T ss_pred CCCceeEeeecchh
Confidence 688999987644
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.69 E-value=0.0047 Score=63.22 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=69.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|+|.|+|+..|.++|+.++.++|.+.+ ++++..+ .++++|.|||.|.++.++.+++...+...+.-+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~--------~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTS--------LRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccc--------cchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 457999999999999999999999999987 5566666 4999999999999999999998877777777777
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
+.|..+.+..
T Consensus 807 ~~v~vsnp~~ 816 (881)
T KOG0128|consen 807 GEVQVSNPER 816 (881)
T ss_pred ccccccCCcc
Confidence 7777776643
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.60 E-value=0.026 Score=48.30 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=49.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhc-cCCeeecCCCCCCcEE--EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVW--LYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~-~G~v~~~~~tg~p~V~--i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
.+..+|.|..||+.+||+++.+.+.. ++...... -+. +......-..-.-|||.|.+.+++...+..++++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~-----y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWY-----YFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---E-----EEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceE-----EEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 34568999999999999998885554 33331100 011 11111111123469999999999999999999988
Q ss_pred ecC-----ceEEEEeccc
Q 023286 80 FHG-----NLIGVFIAES 92 (284)
Q Consensus 80 l~G-----r~i~V~~a~~ 92 (284)
|.+ ....|++|..
T Consensus 80 F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 80 FVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EE-TTS-EEEEEEEE-SS
T ss_pred EECCCCCCcceeEEEcch
Confidence 764 3456677665
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.50 E-value=0.0011 Score=67.78 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=56.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.++||.||+..+.+++|...|..++.+.. |+|...+.+++.+|+|||+|.+++.+.+||.....+.+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~--------vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEV--------VQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhh--------HHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 47899999999999999999999998877 444444556889999999999999999999855544443
No 131
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.16 E-value=0.077 Score=39.81 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
..+|| ..|..+...||.++|+.||.|. |..+.|. -|||.....+.|..++..+.
T Consensus 10 HVFhl-tFPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHL-TFPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEE-E--TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEE-eCchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34455 5999999999999999999987 5455554 59999999999999998775
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.09 E-value=0.035 Score=52.56 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=57.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT---TNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~---tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
..|.|.||.+++|.+.+..+|...|.|.. +.|+.+.. -....-.|||-|.+...+..|-. |..+.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~e--------lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPE--------LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccc--------ccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 37899999999999999999999999987 55655322 12234479999999999998876 66666666
Q ss_pred ceEEEEec
Q 023286 83 NLIGVFIA 90 (284)
Q Consensus 83 r~i~V~~a 90 (284)
+.|.|-++
T Consensus 79 raliv~p~ 86 (479)
T KOG4676|consen 79 RALIVRPY 86 (479)
T ss_pred eeEEEEec
Confidence 66555543
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.80 E-value=0.018 Score=51.65 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=49.0
Q ss_pred HHHHHHHh-ccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEeccc
Q 023286 20 DMLAEYFG-TIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAES 92 (284)
Q Consensus 20 ~dL~~~F~-~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 92 (284)
++|...|+ +||+|+. +.|-.+.. -..+|=+||.|...++|++|++.||+--+.|++|..++...
T Consensus 83 Ed~f~E~~~kygEiee--------~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEE--------LNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhh--------hhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 34444555 8999987 43443332 33567789999999999999999999999999999988654
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.65 E-value=0.021 Score=57.54 Aligned_cols=77 Identities=23% Similarity=0.133 Sum_probs=59.0
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
...|||..||..+++.++.++|...-.|+.. |.|.+.+ +++.++.|||.|..++++..|+..-+.+.+..+.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~-------I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDF-------IELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhhe-------eEeccCC-cccccchhhheeccccccchhhhcccccccCceE
Confidence 4579999999999999999999987777653 6565554 6888899999999988888887644444444566
Q ss_pred EEEEe
Q 023286 85 IGVFI 89 (284)
Q Consensus 85 i~V~~ 89 (284)
|+|..
T Consensus 506 irv~s 510 (944)
T KOG4307|consen 506 IRVDS 510 (944)
T ss_pred EEeec
Confidence 66664
No 135
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.25 E-value=0.057 Score=48.47 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=53.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
..|||.||+.-++-+.|++.|..||.|... |.++-+ .++..+-++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~a-------v~~vD~--r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERA-------VAKVDD--RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchh-------eeeecc--cccccccchhhhhcchhHHHHHHHhc
Confidence 689999999999999999999999999875 434433 37888899999999999999998764
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.11 E-value=0.02 Score=53.11 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=59.8
Q ss_pred CcEEEeccCCCCCCHHHHH---HHHhccCCeeecCCCCCCcEEEeecCCCCC---cccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 5 NGSVYVCNLPHGTDEDMLA---EYFGTIGLLKKDKRTGRPKVWLYRDKTTNE---YKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~---~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~---~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
...+||-+|+..+..+++. +.|.+||.|.. |.+..+..+-. .-.-++|+|...++|..||...++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~k--------i~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINK--------IVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceE--------EeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 3568899999877665543 67888998876 44444431011 1123899999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.+.++.|+..+...+.
T Consensus 149 ~~dg~~lka~~gttky 164 (327)
T KOG2068|consen 149 VDDGRALKASLGTTKY 164 (327)
T ss_pred HhhhhhhHHhhCCCcc
Confidence 9999988888776544
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=0.077 Score=52.22 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=43.2
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----CceEEEEecccCCC
Q 023286 43 VWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH----GNLIGVFIAESRGK 95 (284)
Q Consensus 43 V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~----Gr~i~V~~a~~~~~ 95 (284)
+.|+.|-.+....|||||.|.+++++..+.+.+||+.+. .+...+.||+-+.+
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 567777777788999999999999999999999999765 35567778776554
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.85 E-value=0.45 Score=37.61 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=46.1
Q ss_pred cEEEeccCC-CCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 6 GSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 6 ~tIyV~nLp-~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+|.|--+| ..++.++|..+.+.+-.... .++|+++.. .++-.+.+.|.+.+.|.++...+||+.++-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-------~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIE-------HIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEE-------EEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444444 45555566655555543332 278888753 355578999999999999999999998763
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.83 E-value=0.38 Score=34.48 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEE
Q 023286 15 HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGV 87 (284)
Q Consensus 15 ~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V 87 (284)
..++-++|+..|.+|.-.. |..++ | || ||.|.+.++|+++....++..+...+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-----------I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-----------IRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcce-----------EEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999998643 45554 2 33 99999999999999999999887777654
No 140
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.80 E-value=0.22 Score=45.62 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=48.0
Q ss_pred HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecc
Q 023286 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYK-GDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~r-GfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 91 (284)
+++.+...+||.|.. |.|+..+..-... ---||+|..+++|.+|+..|||..|.|+.++..+-.
T Consensus 301 de~keEceKyg~V~~--------viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGN--------VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceee--------EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 466777889999987 4454443211111 136999999999999999999999999998877654
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.72 E-value=0.41 Score=34.82 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=39.9
Q ss_pred EEEec-cCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 7 SVYVC-NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 7 tIyV~-nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++||. +--..++..+|..+|.....+.... .=.|.|.. -|+||+... +.|+.+|..|++..+.|++|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~---IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRD---IGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGG---EEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHh---EEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 45552 2336788899999998776665432 00133322 389999875 47889999999999999999
Q ss_pred EEEec
Q 023286 86 GVFIA 90 (284)
Q Consensus 86 ~V~~a 90 (284)
+|+.|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99875
No 142
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.82 E-value=1.4 Score=45.01 Aligned_cols=68 Identities=7% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecccC
Q 023286 14 PHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 14 p~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 93 (284)
-..++..+|..++..-+.|.... .=.|.|+. .|.||+... ..|...+..|+...+.++.|.|+.+...
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~---ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRY---IGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhh---CCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 36788888888887666554321 11245543 278999865 4578888889999999999999998533
No 143
>PF12773 DZR: Double zinc ribbon
Probab=92.16 E-value=0.15 Score=34.06 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=41.1
Q ss_pred CCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCeeecccc
Q 023286 151 CPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINWAKRT 230 (284)
Q Consensus 151 C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~~~r~ 230 (284)
|+ .|+..|-..-..|..|+++-+. .....+.|+.|+..|.....
T Consensus 1 Cp--~Cg~~~~~~~~fC~~CG~~l~~----------------------------------~~~~~~~C~~Cg~~~~~~~~ 44 (50)
T PF12773_consen 1 CP--HCGTPNPDDAKFCPHCGTPLPP----------------------------------PDQSKKICPNCGAENPPNAK 44 (50)
T ss_pred CC--CcCCcCCccccCChhhcCChhh----------------------------------ccCCCCCCcCCcCCCcCCcC
Confidence 55 8999988888899999988660 02357899999999999999
Q ss_pred cCccCC
Q 023286 231 KCNICN 236 (284)
Q Consensus 231 ~c~~c~ 236 (284)
.|..|+
T Consensus 45 fC~~CG 50 (50)
T PF12773_consen 45 FCPNCG 50 (50)
T ss_pred ccCccc
Confidence 999986
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.68 E-value=0.045 Score=56.56 Aligned_cols=78 Identities=12% Similarity=0.009 Sum_probs=58.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+.+||++||+..+++.+|+..|..+|.|..+. |+...- +.---|+||.|.+...+-.|...+.+..|..-
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VD------iKtP~~---~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVD------IKTPHI---KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccc------cccCCC---CcccchhhhhhhccccCcccchhhcCCccccC
Confidence 367999999999999999999999999998843 333221 22335899999999999999888887766543
Q ss_pred eEEEEec
Q 023286 84 LIGVFIA 90 (284)
Q Consensus 84 ~i~V~~a 90 (284)
.+++-+.
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 4444443
No 145
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.45 E-value=0.96 Score=37.45 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=51.3
Q ss_pred CCCCcEEEeccCCCCCCH-H---HHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 2 TMANGSVYVCNLPHGTDE-D---MLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te-~---dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
.++-+||.|.=|..++.. + .|...++.||.|.+ |.+. .+--|.|.|.+..+|=.|+..++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~S--------VT~c-------GrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQS--------VTLC-------GRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcce--------eeec-------CCceEEEEehhhHHHHHHHHhhcC
Confidence 456678888866655542 3 34566789999988 4332 233799999999999999998876
Q ss_pred ceecCceEEEEec
Q 023286 78 KDFHGNLIGVFIA 90 (284)
Q Consensus 78 ~~l~Gr~i~V~~a 90 (284)
..-|..+...+-
T Consensus 148 -~~pgtm~qCsWq 159 (166)
T PF15023_consen 148 -RAPGTMFQCSWQ 159 (166)
T ss_pred -CCCCceEEeecc
Confidence 345666666553
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.36 E-value=0.6 Score=45.15 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++..|.|-.+|..+|-.||..|...+-..... |+|++|.. -.+=..+|.|.+.++|..+.+.+||+.|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~-------irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISD-------IRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhhe-------eEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 36789999999999999999998876443332 88998653 233357999999999999999999998874
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.19 E-value=0.18 Score=52.13 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=64.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--Cce
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH--GNL 84 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~--Gr~ 84 (284)
+.++.|.+-..+...|..++.+||.|.+ .|..++-. .|.|+|.+.+.|..|++.++|+++. |-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s--------~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVAS--------AWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhh--------heeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 4566777788888999999999999988 66766653 7999999999999999999998754 788
Q ss_pred EEEEecccCCCCC
Q 023286 85 IGVFIAESRGKDD 97 (284)
Q Consensus 85 i~V~~a~~~~~~~ 97 (284)
.+|.+|+.-+.-+
T Consensus 366 s~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 366 SRVSFAKTLPMYE 378 (1007)
T ss_pred eeEEecccccccc
Confidence 9999998766543
No 148
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.96 E-value=0.15 Score=51.30 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=60.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++..+|||+||...+.++-++.++..+|.|.+ +.+++ |+|.+|..+..+..|+..+.-..+++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s----------~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPS----------WKRDK-------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchh----------hhhhh-------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 46789999999999999999999999999976 33333 99999999999999999888888888
Q ss_pred ceEEEEec
Q 023286 83 NLIGVFIA 90 (284)
Q Consensus 83 r~i~V~~a 90 (284)
..+.+...
T Consensus 101 ~kl~~~~d 108 (668)
T KOG2253|consen 101 QKLIENVD 108 (668)
T ss_pred chhhccch
Confidence 77766653
No 149
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.56 E-value=0.94 Score=39.10 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=43.4
Q ss_pred CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceecCceEEEEecccCC
Q 023286 18 DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NKDFHGNLIGVFIAESRG 94 (284)
Q Consensus 18 te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln--g~~l~Gr~i~V~~a~~~~ 94 (284)
..+.|+++|..|+.+.. +.++ + +-.-..|.|.+.++|.+|...|+ +..+.+..++|-++....
T Consensus 8 ~~~~l~~l~~~~~~~~~--------~~~L--~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQ--------FSPL--K----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-E--------EEEE--T----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceE--------EEEc--C----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999998765 3222 2 22358999999999999999999 899999999999986443
No 150
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.70 E-value=0.21 Score=48.40 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcEEEeccCCCCC-CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 5 NGSVYVCNLPHGT-DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~-te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+.|-|.-+|... |.++|..+|.+||.|.. |.|-... --|.|+|.+..+|-.|-. .++..|+++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n--------~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIEN--------IQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNR 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCcccc--------ccccCch------hhheeeeeccccccchhc-cccceecCc
Confidence 3444444455444 45789999999999987 4443322 258999999999966653 788999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|+|.+-++.
T Consensus 437 ~iKl~whnps 446 (526)
T KOG2135|consen 437 FIKLFWHNPS 446 (526)
T ss_pred eeEEEEecCC
Confidence 9999998763
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.33 E-value=0.2 Score=46.13 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=64.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..++|++++...+.+.++..++.++|.+.. ..+........++++++|.|...+.+..+|.....+.+.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~--------~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVD--------ARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccchhhccccccchhhcCccc--------chhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 468999999999999989999999997766 335555667889999999999999999999865555666666
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
+...+....
T Consensus 160 ~~~dl~~~~ 168 (285)
T KOG4210|consen 160 GEKDLNTRR 168 (285)
T ss_pred ccCcccccc
Confidence 655555543
No 152
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=87.68 E-value=0.25 Score=28.61 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.9
Q ss_pred eecCCCCCeeecccccCccCCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNTN 238 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~~ 238 (284)
+.|+.|+..+-+.-.-|-.|+++
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 67999999999999999999975
No 153
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=86.64 E-value=0.56 Score=48.03 Aligned_cols=50 Identities=28% Similarity=0.684 Sum_probs=42.4
Q ss_pred CCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCeeeccc
Q 023286 150 MCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINWAKR 229 (284)
Q Consensus 150 ~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~~~r 229 (284)
.|| .|+..|-..-..|.+|+.+-.. =.|+.|+..|-..-
T Consensus 3 ~Cp--~Cg~~n~~~akFC~~CG~~l~~---------------------------------------~~Cp~CG~~~~~~~ 41 (645)
T PRK14559 3 ICP--QCQFENPNNNRFCQKCGTSLTH---------------------------------------KPCPQCGTEVPVDE 41 (645)
T ss_pred cCC--CCCCcCCCCCccccccCCCCCC---------------------------------------CcCCCCCCCCCccc
Confidence 698 9999999999999999877320 14999999999999
Q ss_pred ccCccCCCCCC
Q 023286 230 TKCNICNTNKP 240 (284)
Q Consensus 230 ~~c~~c~~~~~ 240 (284)
.-|.+|+++-.
T Consensus 42 ~fC~~CG~~~~ 52 (645)
T PRK14559 42 AHCPNCGAETG 52 (645)
T ss_pred ccccccCCccc
Confidence 99999998654
No 154
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.94 E-value=2.4 Score=39.14 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=47.8
Q ss_pred EEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc-eEE
Q 023286 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN-LIG 86 (284)
Q Consensus 8 IyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr-~i~ 86 (284)
|-|-++|+.-. ..|..+|++||.|.. .+.- ..-.|-+|.|.+..+|++||. .+++.|++. .|-
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvk----------hv~~----~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiG 263 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVK----------HVTP----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIG 263 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeee----------eecC----CCCceEEEEecchhHHHHhhh-hcCeeeccceEEe
Confidence 34446766543 567789999999975 2221 222499999999999999998 788888874 455
Q ss_pred EEec
Q 023286 87 VFIA 90 (284)
Q Consensus 87 V~~a 90 (284)
|...
T Consensus 264 VkpC 267 (350)
T KOG4285|consen 264 VKPC 267 (350)
T ss_pred eeec
Confidence 6653
No 155
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=85.66 E-value=0.72 Score=49.98 Aligned_cols=53 Identities=30% Similarity=0.716 Sum_probs=41.1
Q ss_pred CCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCeee
Q 023286 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNINW 226 (284)
Q Consensus 147 GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~n~ 226 (284)
+.-.|| .|+..+|.. .|..|+.+.. -.+.|+.|++..-
T Consensus 666 ~~rkCP--kCG~~t~~~--fCP~CGs~te--------------------------------------~vy~CPsCGaev~ 703 (1337)
T PRK14714 666 GRRRCP--SCGTETYEN--RCPDCGTHTE--------------------------------------PVYVCPDCGAEVP 703 (1337)
T ss_pred EEEECC--CCCCccccc--cCcccCCcCC--------------------------------------CceeCccCCCccC
Confidence 458999 999998875 8999997741 1479999998643
Q ss_pred cc---cccCccCCCCCCC
Q 023286 227 AK---RTKCNICNTNKPG 241 (284)
Q Consensus 227 ~~---r~~c~~c~~~~~~ 241 (284)
.. .+.|-+|+.+-..
T Consensus 704 ~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 704 PDESGRVECPRCDVELTP 721 (1337)
T ss_pred CCccccccCCCCCCcccc
Confidence 33 6689999987655
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=85.35 E-value=6.6 Score=41.68 Aligned_cols=7 Identities=14% Similarity=0.008 Sum_probs=3.5
Q ss_pred cCCCCCC
Q 023286 144 QQDGDWM 150 (284)
Q Consensus 144 ~r~GDW~ 150 (284)
.+.|+|.
T Consensus 1231 srgGfrn 1237 (1282)
T KOG0921|consen 1231 SRGGFRN 1237 (1282)
T ss_pred cCCcccc
Confidence 3455553
No 157
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=84.83 E-value=0.45 Score=26.79 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.2
Q ss_pred ecCCCCCeeecccccCccCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTN 238 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~ 238 (284)
.|+.|++.+-....-|..|+++
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 3899999999999999999875
No 158
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.31 E-value=1 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=16.1
Q ss_pred eecCCCCCeeecc--cccCccCCCCC
Q 023286 216 WSCPMCGNINWAK--RTKCNICNTNK 239 (284)
Q Consensus 216 w~c~~c~~~n~~~--r~~c~~c~~~~ 239 (284)
|+|..|+++-... --.|-.|++++
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~~~ 27 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGAPK 27 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCCcH
Confidence 7788888774433 45777777765
No 159
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.35 E-value=1.3 Score=27.32 Aligned_cols=25 Identities=44% Similarity=1.091 Sum_probs=19.8
Q ss_pred ceecCCCCCeeecc--cccCccCCCCC
Q 023286 215 DWSCPMCGNINWAK--RTKCNICNTNK 239 (284)
Q Consensus 215 dw~c~~c~~~n~~~--r~~c~~c~~~~ 239 (284)
-|.|..|+++--.. -..|-.|++++
T Consensus 2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~ 28 (34)
T cd00729 2 VWVCPVCGYIHEGEEAPEKCPICGAPK 28 (34)
T ss_pred eEECCCCCCEeECCcCCCcCcCCCCch
Confidence 49999999984443 36899999876
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=80.74 E-value=2.4 Score=42.26 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=41.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhcc--CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~--G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
.+.|+|.-||..+.+++|+.+|..- -.+.+ +..-.+. + =||+|++..+|+.|.++|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~is--------cefa~N~------n-WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVIS--------CEFAHND------N-WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCcee--------eeeeecC------c-eEEEeecchhHHHHHHHHH
Confidence 3568889999999999999999853 22222 2222221 1 3999999999999987654
No 161
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.44 E-value=0.24 Score=47.57 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=63.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+.++-|.|+|+...++.|..++.+||.+..+. .+..+.+|- .--|+|.+.+.++.||..|++..|....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~e-------qvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCE-------QVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhh-------hhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 45678899999999999999999999998753 244454432 3467899999999999999999999999
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
++|.|-...
T Consensus 149 ~k~~YiPde 157 (584)
T KOG2193|consen 149 LKVGYIPDE 157 (584)
T ss_pred hhcccCchh
Confidence 999886543
No 162
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=77.54 E-value=0.93 Score=38.81 Aligned_cols=30 Identities=30% Similarity=0.712 Sum_probs=26.8
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
-.|-|.|..|-+.|-|---.|+.|...|..
T Consensus 21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKGT 50 (228)
T KOG4477|consen 21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKGT 50 (228)
T ss_pred ccCceeeeeeeecchhhhhheeeecccccc
Confidence 357899999999999999999999887765
No 163
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=72.94 E-value=1.5 Score=31.18 Aligned_cols=15 Identities=47% Similarity=1.227 Sum_probs=12.2
Q ss_pred CceecCCCCCeeecc
Q 023286 214 NDWSCPMCGNINWAK 228 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~ 228 (284)
+-|.||+|++.||.-
T Consensus 3 ~~~kCpKCgn~~~~e 17 (68)
T COG3478 3 NAFKCPKCGNTNYEE 17 (68)
T ss_pred ccccCCCcCCcchhh
Confidence 458899999999863
No 164
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.44 E-value=5.1 Score=36.86 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=38.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHH
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPH 66 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e 66 (284)
.+-|||+|||.++.-.||+..+.+.+.+.. .|...- +.+-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm---------~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPM---------SISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCce---------eEeeec----CCcceeEecCCcc
Confidence 456999999999999999999998887763 344322 5677999997643
No 165
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=71.88 E-value=1.9 Score=28.72 Aligned_cols=12 Identities=58% Similarity=1.763 Sum_probs=7.9
Q ss_pred CCceecCCCCCe
Q 023286 213 PNDWSCPMCGNI 224 (284)
Q Consensus 213 ~~dw~c~~c~~~ 224 (284)
+.||.||.|++.
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 689999999875
No 166
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=70.40 E-value=50 Score=31.41 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=3.6
Q ss_pred CCcccCCC
Q 023286 140 GKTWQQDG 147 (284)
Q Consensus 140 gg~~~r~G 147 (284)
+++|.+++
T Consensus 381 Gggyqqp~ 388 (465)
T KOG3973|consen 381 GGGYQQPQ 388 (465)
T ss_pred CCCCcCch
Confidence 44444443
No 167
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=70.13 E-value=2.1 Score=28.58 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.3
Q ss_pred CceecCCCCCeeecccccCccCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNT 237 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~ 237 (284)
.-++|-.|.+-|-.+-+.|-+|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 568999999999999999999985
No 168
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=67.58 E-value=5.2 Score=27.98 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=23.1
Q ss_pred ceecCCCCCee-----ecccccCccCCCCCCC
Q 023286 215 DWSCPMCGNIN-----WAKRTKCNICNTNKPG 241 (284)
Q Consensus 215 dw~c~~c~~~n-----~~~r~~c~~c~~~~~~ 241 (284)
|..|+.|.|.+ -+..+.|..|++.-..
T Consensus 11 ~VkCp~C~n~q~vFsha~t~V~C~~Cg~~L~~ 42 (59)
T PRK00415 11 KVKCPDCGNEQVVFSHASTVVRCLVCGKTLAE 42 (59)
T ss_pred EEECCCCCCeEEEEecCCcEEECcccCCCccc
Confidence 78999999988 6778899999987654
No 169
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.64 E-value=11 Score=36.20 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=45.5
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEW 74 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ 74 (284)
+.|-|.++|...-.+||...|..|+.--. +|+++.|. .+|..|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgf-------dIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGF-------DIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCc-------eeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 56778899999999999999999976443 27677665 699999999999999973
No 170
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=64.36 E-value=3.3 Score=27.97 Aligned_cols=13 Identities=54% Similarity=1.467 Sum_probs=10.7
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 31 Lp~~w~CP~C~a~ 43 (50)
T cd00730 31 LPDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCCc
Confidence 3679999999864
No 171
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.75 E-value=8.9 Score=30.52 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred EEEeccCCCCC---------CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 023286 7 SVYVCNLPHGT---------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVE 73 (284)
Q Consensus 7 tIyV~nLp~~~---------te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s-~e~A~~Ai~ 73 (284)
+++|-|++... +.++|++.|..|..++ |+.+.++. -+.|++.|.|.+ -.-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k---------v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK---------VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE---------EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce---------eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 56777886543 4578999999998876 44555553 478999999985 344455554
No 172
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=63.34 E-value=4.4 Score=34.39 Aligned_cols=26 Identities=35% Similarity=0.901 Sum_probs=20.4
Q ss_pred ceecCCCCCeeec-ccccCccCCCCCC
Q 023286 215 DWSCPMCGNINWA-KRTKCNICNTNKP 240 (284)
Q Consensus 215 dw~c~~c~~~n~~-~r~~c~~c~~~~~ 240 (284)
.|+|+.|+++-.- --..|--|++||-
T Consensus 134 ~~vC~vCGy~~~ge~P~~CPiCga~k~ 160 (166)
T COG1592 134 VWVCPVCGYTHEGEAPEVCPICGAPKE 160 (166)
T ss_pred EEEcCCCCCcccCCCCCcCCCCCChHH
Confidence 8999999987544 2346999999874
No 173
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.57 E-value=11 Score=36.13 Aligned_cols=21 Identities=5% Similarity=0.306 Sum_probs=17.9
Q ss_pred eccCCCCCCHHHHHHHHhccC
Q 023286 10 VCNLPHGTDEDMLAEYFGTIG 30 (284)
Q Consensus 10 V~nLp~~~te~dL~~~F~~~G 30 (284)
|-+|+.+.+++||+..|.+.-
T Consensus 9 iLGV~k~As~~EIKkAYRkLA 29 (371)
T COG0484 9 ILGVSKDASEEEIKKAYRKLA 29 (371)
T ss_pred hcCCCCCCCHHHHHHHHHHHH
Confidence 558999999999999987654
No 174
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=54.61 E-value=7.1 Score=36.34 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCceecCCCCCeeecccccCccCCCCC
Q 023286 213 PNDWSCPMCGNINWAKRTKCNICNTNK 239 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~ 239 (284)
.-||.|.+|+++--.+.-.|-+|++--
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCcc
Confidence 458999999999999999999998743
No 175
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.23 E-value=13 Score=34.26 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=35.8
Q ss_pred CcEEEeccCCC------------CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEE
Q 023286 5 NGSVYVCNLPH------------GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATV 60 (284)
Q Consensus 5 ~~tIyV~nLp~------------~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV 60 (284)
..|||+.+||- -.+++-|+..|..||.|..+. .|.+.-++...+++..|.-|-
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vd---ipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVD---IPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecC---CcccchhHHHhcCccccceee
Confidence 57899999983 245678999999999998753 444444455556665444333
No 176
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=53.21 E-value=8.4 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.908 Sum_probs=13.9
Q ss_pred ecCCCCCeeecccccCccCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTN 238 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~ 238 (284)
.|..|+.+.|--+..|..|...
T Consensus 13 rC~~Cg~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 13 RCRDCGRVQFPPRPVCPHCGSD 34 (37)
T ss_dssp E-TTT--EEES--SEETTTT--
T ss_pred EcCCCCCEecCCCcCCCCcCcc
Confidence 5889999999999999999753
No 177
>PRK04023 DNA polymerase II large subunit; Validated
Probab=53.08 E-value=16 Score=39.33 Aligned_cols=54 Identities=30% Similarity=0.658 Sum_probs=40.8
Q ss_pred cCCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCC
Q 023286 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGN 223 (284)
Q Consensus 144 ~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~ 223 (284)
..-+.-.|+ .|+...+. ..|..|+... ..-|.|+.|+.
T Consensus 622 VEVg~RfCp--sCG~~t~~--frCP~CG~~T--------------------------------------e~i~fCP~CG~ 659 (1121)
T PRK04023 622 VEIGRRKCP--SCGKETFY--RRCPFCGTHT--------------------------------------EPVYRCPRCGI 659 (1121)
T ss_pred ecccCccCC--CCCCcCCc--ccCCCCCCCC--------------------------------------CcceeCccccC
Confidence 456888999 99998644 5799999771 13689999987
Q ss_pred eeecccccCccCCCCCCC
Q 023286 224 INWAKRTKCNICNTNKPG 241 (284)
Q Consensus 224 ~n~~~r~~c~~c~~~~~~ 241 (284)
..- ...|.+|+..-..
T Consensus 660 ~~~--~y~CPKCG~El~~ 675 (1121)
T PRK04023 660 EVE--EDECEKCGREPTP 675 (1121)
T ss_pred cCC--CCcCCCCCCCCCc
Confidence 643 3679999986654
No 178
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=50.59 E-value=5.2 Score=41.96 Aligned_cols=50 Identities=28% Similarity=0.697 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCe
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (284)
.=+...|+ .|+...|.. .|-.|+.... -.|.|+.|+..
T Consensus 652 ei~~r~Cp--~Cg~~t~~~--~Cp~CG~~T~--------------------------------------~~~~Cp~C~~~ 689 (900)
T PF03833_consen 652 EIGRRRCP--KCGKETFYN--RCPECGSHTE--------------------------------------PVYVCPDCGIE 689 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecccCc--ccCCcchhh--cCcccCCccc--------------------------------------cceeccccccc
Confidence 34788998 899887655 4999987632 37999999986
Q ss_pred eecccccCccCCCC
Q 023286 225 NWAKRTKCNICNTN 238 (284)
Q Consensus 225 n~~~r~~c~~c~~~ 238 (284)
.-.. .|-+|+.+
T Consensus 690 ~~~~--~C~~C~~~ 701 (900)
T PF03833_consen 690 VEED--ECPKCGRE 701 (900)
T ss_dssp --------------
T ss_pred cCcc--cccccccc
Confidence 5444 99999876
No 179
>COG1773 Rubredoxin [Energy production and conversion]
Probab=49.83 E-value=8 Score=26.68 Aligned_cols=12 Identities=58% Similarity=1.561 Sum_probs=10.5
Q ss_pred CCCceecCCCCC
Q 023286 212 GPNDWSCPMCGN 223 (284)
Q Consensus 212 ~~~dw~c~~c~~ 223 (284)
=+.||.||.|++
T Consensus 33 lPd~w~CP~Cg~ 44 (55)
T COG1773 33 LPDDWVCPECGV 44 (55)
T ss_pred CCCccCCCCCCC
Confidence 479999999996
No 180
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.34 E-value=9.8 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=17.4
Q ss_pred ecCCCCCeeecccccCccCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNT 237 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~ 237 (284)
.||.|+...-.....|..|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCC
Confidence 588888888888888888875
No 181
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.33 E-value=19 Score=33.19 Aligned_cols=36 Identities=25% Similarity=0.180 Sum_probs=26.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCceEEEEecccCCC
Q 023286 58 ATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESRGK 95 (284)
Q Consensus 58 aFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~~~ 95 (284)
|||+|++..+|+.|++.+.... ...++|+.|....+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655432 35567777765543
No 182
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.24 E-value=28 Score=25.18 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=43.4
Q ss_pred HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecccC
Q 023286 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 93 (284)
++|++.|..+|.-... |..+..+.+..+--.-||+.....+-.. .|+=+.|.+.+|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~-------i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLF-------IHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeE-------EEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 4688888888865442 6777777777776777888876543333 35556677888888876543
No 183
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=47.01 E-value=11 Score=25.34 Aligned_cols=21 Identities=33% Similarity=0.854 Sum_probs=13.7
Q ss_pred ecCCCCC---eeecccccCccCCC
Q 023286 217 SCPMCGN---INWAKRTKCNICNT 237 (284)
Q Consensus 217 ~c~~c~~---~n~~~r~~c~~c~~ 237 (284)
.||.|++ .+-..|..|.+|+.
T Consensus 22 fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 22 FCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred cCcCCCcchheccCCcEECCCcCC
Confidence 6777876 33335777877764
No 184
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=46.10 E-value=14 Score=30.33 Aligned_cols=22 Identities=27% Similarity=0.893 Sum_probs=21.1
Q ss_pred ecCCCCCeeecccccCccCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTN 238 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~ 238 (284)
.|.+|+.+-|--|..|-+|+.+
T Consensus 31 kC~~CG~v~~PPr~~Cp~C~~~ 52 (140)
T COG1545 31 KCKKCGRVYFPPRAYCPKCGSE 52 (140)
T ss_pred EcCCCCeEEcCCcccCCCCCCC
Confidence 6999999999999999999987
No 185
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=45.62 E-value=25 Score=29.88 Aligned_cols=63 Identities=29% Similarity=0.303 Sum_probs=41.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
.....+++.+++..++..++..+|..++.+.. +.+...........+.++.+.....+...+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVR--------ASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccceeeccccccccchhHHHHhcccccccee--------eeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 34678999999999999999999999999865 3344443323333344444444444444433
No 186
>PTZ00146 fibrillarin; Provisional
Probab=45.47 E-value=44 Score=31.00 Aligned_cols=7 Identities=0% Similarity=-0.083 Sum_probs=3.2
Q ss_pred ccccCCC
Q 023286 167 CNRCGTA 173 (284)
Q Consensus 167 C~rC~~~ 173 (284)
|-++.+|
T Consensus 78 ~t~n~~p 84 (293)
T PTZ00146 78 VTKNMVP 84 (293)
T ss_pred EeecCCC
Confidence 4444444
No 187
>PHA00626 hypothetical protein
Probab=45.05 E-value=13 Score=25.69 Aligned_cols=25 Identities=44% Similarity=0.768 Sum_probs=16.2
Q ss_pred ecCCCCCeeecc---------cccCccCCCCCCC
Q 023286 217 SCPMCGNINWAK---------RTKCNICNTNKPG 241 (284)
Q Consensus 217 ~c~~c~~~n~~~---------r~~c~~c~~~~~~ 241 (284)
.||.|+..|..+ +-.|..|+---..
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeech
Confidence 588888876654 4456667754444
No 188
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=43.36 E-value=14 Score=29.32 Aligned_cols=41 Identities=37% Similarity=0.609 Sum_probs=29.7
Q ss_pred cCCCCCeeecccccCccCCCCCCCCCCCCCCCCCCCCcCcCChHHHHH
Q 023286 218 CPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEE 265 (284)
Q Consensus 218 c~~c~~~n~~~r~~c~~c~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~ 265 (284)
||.|+..=-..+..|..|++.--..=. -.=|..+++++++=
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~i~G~F~-------l~~~~~L~~E~~~F 41 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTEIEGEFE-------LPWFARLSPEQLEF 41 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCEEEeeec-------cchhhcCCHHHHHH
Confidence 999999999999999999986543211 11266677776654
No 189
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=43.23 E-value=19 Score=29.29 Aligned_cols=30 Identities=33% Similarity=0.755 Sum_probs=24.6
Q ss_pred CCCCCceecCCCCCeeecccccCccCCCCCC
Q 023286 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKP 240 (284)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~ 240 (284)
....-+|.|+.|... |.-...|-+|++--.
T Consensus 92 v~~~~~W~Cv~C~~~-Y~GeK~C~~C~tGiY 121 (128)
T PF11682_consen 92 VPRKTDWHCVMCGNH-YHGEKYCPKCGTGIY 121 (128)
T ss_pred CCcCceEEEecCCCc-cCcCEecCCCCCccc
Confidence 457789999999987 777899999987443
No 190
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=41.41 E-value=12 Score=26.61 Aligned_cols=12 Identities=42% Similarity=1.279 Sum_probs=8.6
Q ss_pred eecCCCCCeeec
Q 023286 216 WSCPMCGNINWA 227 (284)
Q Consensus 216 w~c~~c~~~n~~ 227 (284)
|.||+|++..+.
T Consensus 1 y~C~KCg~~~~e 12 (64)
T PF09855_consen 1 YKCPKCGNEEYE 12 (64)
T ss_pred CCCCCCCCccee
Confidence 788888865543
No 191
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=41.12 E-value=30 Score=33.04 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=46.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCC--CCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT--TNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~--tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
-..|.|..||+..++.+|.+.+..|-.-... ........ -....++|||.|...++.......++++.|..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~-------~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNW-------EFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccch-------heeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 3578899999999999888766653322111 00110000 01125689999999999999988899887653
No 192
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=40.52 E-value=26 Score=22.79 Aligned_cols=22 Identities=27% Similarity=0.928 Sum_probs=13.9
Q ss_pred eecCCCCCeeeccc-----ccCccCCC
Q 023286 216 WSCPMCGNINWAKR-----TKCNICNT 237 (284)
Q Consensus 216 w~c~~c~~~n~~~r-----~~c~~c~~ 237 (284)
-.||.|+.....+. -.|..|..
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 66999997544433 34777753
No 193
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.67 E-value=52 Score=23.51 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecccC
Q 023286 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 93 (284)
++|++.|...|.-... |.-+..+.+..+--.-||+++...+..+ .|+=..|.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~-------i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRN-------IHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEE-------EEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 5678888877764432 5556666566666677888876544333 34555677888888876543
No 194
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=38.81 E-value=64 Score=22.81 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=13.4
Q ss_pred HHHHHHHhccCCeee
Q 023286 20 DMLAEYFGTIGLLKK 34 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~ 34 (284)
.+|+++|+..|.|..
T Consensus 9 ~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAV 23 (62)
T ss_pred HHHHHHHHhcCcEEE
Confidence 579999999999975
No 195
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=38.74 E-value=17 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=9.0
Q ss_pred ceecCCCCCeeecc
Q 023286 215 DWSCPMCGNINWAK 228 (284)
Q Consensus 215 dw~c~~c~~~n~~~ 228 (284)
-|.|+.|+++-...
T Consensus 20 ~~vC~~Cg~~~~~~ 33 (52)
T smart00661 20 RFVCRKCGYEEPIE 33 (52)
T ss_pred EEECCcCCCeEECC
Confidence 57777777665543
No 196
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=38.53 E-value=5.3 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred eecCCCCCeeecccccCccCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNT 237 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~ 237 (284)
-+|-.|++.|-.+-+.|-+|+.
T Consensus 15 kIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 15 KICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred HHHHHhcCCCCcchhHHhhccC
Confidence 4688999999999999999965
No 197
>PRK11901 hypothetical protein; Reviewed
Probab=38.50 E-value=75 Score=29.88 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=37.9
Q ss_pred cCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEE--EEEeCCHHHHHHHHHHhCCc
Q 023286 12 NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDA--TVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 12 nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfa--FV~F~s~e~A~~Ai~~lng~ 78 (284)
.|--...++.|..|..+++. .. ++|+.....|+. -|. |=.|.+.++|+.||..|...
T Consensus 249 QL~Aas~~~~L~~f~~~~~L-~~--------~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQNL-SH--------YHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred EeecCCCHHHHHHHHHHcCc-Cc--------eEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 33344568888888887753 33 667765544443 333 33789999999999988643
No 198
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=37.81 E-value=7.6 Score=34.49 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=49.1
Q ss_pred EEEecc----CCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 7 SVYVCN----LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 7 tIyV~n----Lp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
+++-++ |...++++.+...|++-+.+.. +++..+.+ ++++.+.|+++.-..+.-.++..+.+..
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~~--------~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIEG--------VRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCCC--------cccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 445555 6677888888888888888876 66777765 8889999999988888778887666554
No 199
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=36.67 E-value=28 Score=31.23 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=29.0
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeee
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKK 34 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~ 34 (284)
..+..++|+-|||...|++.|..+.++.|.+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 456789999999999999999999999987654
No 200
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=36.42 E-value=6.9 Score=37.51 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=46.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+|+|.+|+..+...++.+.|..+|.|..+. +- .+...-++-|+|....+...|+. +++.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~--------~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAH--------TA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhh--------hh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 5799999999999999999999999987642 21 12223367789988888888876 5555544
No 201
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=36.32 E-value=22 Score=29.63 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=13.7
Q ss_pred CCCCceecCCCCCeeeccc
Q 023286 211 FGPNDWSCPMCGNINWAKR 229 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r 229 (284)
+-.|||.||.|-...-...
T Consensus 14 ~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 14 VPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CCCCCcCCCCCcCCCCCCc
Confidence 3469999999987644443
No 202
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=36.25 E-value=18 Score=24.75 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=12.1
Q ss_pred CCCCceecCCCCCee
Q 023286 211 FGPNDWSCPMCGNIN 225 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n 225 (284)
+..=.|.|+.|++.|
T Consensus 40 ~~~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 40 FEEIQYRCPYCGALN 54 (54)
T ss_pred CCceEEEcCCCCCcC
Confidence 445589999999887
No 203
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.93 E-value=40 Score=29.10 Aligned_cols=75 Identities=16% Similarity=0.302 Sum_probs=49.6
Q ss_pred cEEEeccCCCCCCHH-----HHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 6 GSVYVCNLPHGTDED-----MLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 6 ~tIyV~nLp~~~te~-----dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
+++++-.|+..+-.+ ..+.+|.+|..... .++++ +..+--|.|.+++.|..|...++...|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~--------fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f 76 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDAT--------FQLLR------SFRRVRINFSNPEAAADARIKLHSTSF 76 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchH--------HHHHH------hhceeEEeccChhHHHHHHHHhhhccc
Confidence 356666776544332 23455665555433 22332 334667899999999999999999999
Q ss_pred cCc-eEEEEecccCC
Q 023286 81 HGN-LIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr-~i~V~~a~~~~ 94 (284)
.++ .++.-++.+..
T Consensus 77 ~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 77 NGKNELKLYFAQPGH 91 (193)
T ss_pred CCCceEEEEEccCCC
Confidence 988 77777776544
No 204
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=34.69 E-value=32 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.744 Sum_probs=20.6
Q ss_pred eecCCCCCeeecccccCccCCCCCCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
-.|+.|+...+ ...|-.|+.+-...
T Consensus 6 r~C~~CgvYTL--k~~CP~CG~~t~~~ 30 (56)
T PRK13130 6 RKCPKCGVYTL--KEICPVCGGKTKNP 30 (56)
T ss_pred eECCCCCCEEc--cccCcCCCCCCCCC
Confidence 37999999888 89999999876553
No 205
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=34.28 E-value=23 Score=33.47 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=21.6
Q ss_pred ecCCCCCeeecccccCccCCCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTNKP 240 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~ 240 (284)
.|+.|++.-|=-++.|..|+.+-.
T Consensus 1 ~C~~Cg~~v~FeNt~C~~Cg~~LG 24 (343)
T PF10005_consen 1 SCPNCGQPVFFENTRCLSCGSALG 24 (343)
T ss_pred CCCCCCCcceeCCCccccCCcccc
Confidence 499999999999999999998754
No 206
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=34.27 E-value=20 Score=23.54 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=19.3
Q ss_pred CceecCCCCCeeecccccCcc--CCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNI--CNTNK 239 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~--c~~~~ 239 (284)
|--.||.|+..|=.+-..|-. |....
T Consensus 10 GirkCp~CGt~NG~R~~~CKN~~C~~~~ 37 (44)
T PF14952_consen 10 GIRKCPKCGTYNGTRGLSCKNKSCPQVF 37 (44)
T ss_pred ccccCCcCcCccCcccccccCCccchhh
Confidence 566899999999877777753 65443
No 207
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=33.69 E-value=28 Score=21.68 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=13.1
Q ss_pred eecCCCCCee------ecccccCccCCC
Q 023286 216 WSCPMCGNIN------WAKRTKCNICNT 237 (284)
Q Consensus 216 w~c~~c~~~n------~~~r~~c~~c~~ 237 (284)
|+|+.|+.+= ...-..|..|+.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB--SSTTBCTTTTE
T ss_pred cCcCCCCCccccccCCCCCCCccCCCCC
Confidence 7888888431 223456777765
No 208
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.55 E-value=21 Score=36.77 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=15.5
Q ss_pred CCceecCCCCCeeecccccCccCCCCCCCCCC
Q 023286 213 PNDWSCPMCGNINWAKRTKCNICNTNKPGHNE 244 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~~ 244 (284)
++.-.|+.|+..=- ...|.+|++.-|..+.
T Consensus 13 ~~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~ 42 (645)
T PRK14559 13 NNNRFCQKCGTSLT--HKPCPQCGTEVPVDEA 42 (645)
T ss_pred CCCccccccCCCCC--CCcCCCCCCCCCcccc
Confidence 34455666665421 1356666666555443
No 209
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=33.25 E-value=20 Score=33.17 Aligned_cols=20 Identities=30% Similarity=0.946 Sum_probs=17.5
Q ss_pred CCCceecCCCCCeeecccccCccCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICN 236 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~ 236 (284)
.+.+|.|+.|+.+| -|..|+
T Consensus 303 pa~t~~~~r~~k~n-----fc~ncG 322 (345)
T COG4260 303 PAATWPCARCAKLN-----FCLNCG 322 (345)
T ss_pred CcccCcchhccccc-----cccccC
Confidence 35899999999999 588888
No 210
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=32.75 E-value=34 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.741 Sum_probs=11.9
Q ss_pred ecCCCCCeeecc---------cccCccCCC
Q 023286 217 SCPMCGNINWAK---------RTKCNICNT 237 (284)
Q Consensus 217 ~c~~c~~~n~~~---------r~~c~~c~~ 237 (284)
.||.|+..+... .+.|-+|++
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 477777654433 246666665
No 211
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=32.64 E-value=20 Score=24.19 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.0
Q ss_pred cccccCccCC
Q 023286 227 AKRTKCNICN 236 (284)
Q Consensus 227 ~~r~~c~~c~ 236 (284)
..|..|-+|+
T Consensus 35 ~dR~~CGkCg 44 (51)
T COG1998 35 KDRWACGKCG 44 (51)
T ss_pred CceeEecccc
Confidence 3455555554
No 212
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=32.31 E-value=36 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.788 Sum_probs=12.2
Q ss_pred eecCCCCCee----ecccccCccCCCC
Q 023286 216 WSCPMCGNIN----WAKRTKCNICNTN 238 (284)
Q Consensus 216 w~c~~c~~~n----~~~r~~c~~c~~~ 238 (284)
..|+.|+... ......|..|+.+
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCe
Confidence 4566666543 1114566666654
No 213
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.44 E-value=1.4e+02 Score=21.85 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=38.3
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
.-|+--++...+..+|+..+++.-.|...+ |..+.-+. ..-=|||++..-+.|.+.-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~------Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEK------VNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEE------EEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 355667889999999999998743343322 54444332 11249999988888776543
No 214
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.27 E-value=29 Score=35.95 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=17.0
Q ss_pred ceecCCCCCeeecccccCccCCCCCCC
Q 023286 215 DWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 215 dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
-=.|.+|++.- . -..|-.|+...-.
T Consensus 410 ~l~Ch~CG~~~-~-p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 410 TPRCRWCGRAA-P-DWRCPRCGSDRLR 434 (665)
T ss_pred eeECCCCcCCC-c-CccCCCCcCCcce
Confidence 45688888764 4 5688888776543
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.97 E-value=2.3e+02 Score=28.81 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCcEEEeccCCC-CCCHHHHHHHHhcc----CCeeecCCCCCCcEEEeecC----------CC-----------------
Q 023286 4 ANGSVYVCNLPH-GTDEDMLAEYFGTI----GLLKKDKRTGRPKVWLYRDK----------TT----------------- 51 (284)
Q Consensus 4 ~~~tIyV~nLp~-~~te~dL~~~F~~~----G~v~~~~~tg~p~V~i~~dk----------~t----------------- 51 (284)
++.+|-|-||.+ .+...||..+|..| |.|.++ .|+... .+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV--------~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~ 244 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSV--------KIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESE 244 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEE--------EechhhhhHHHhhhhcccCChhhhccccccCcccc
Confidence 467888999986 45678899888876 466653 332211 00
Q ss_pred -------------------CCcc-cEEEEEeCCHHHHHHHHHHhCCceecCceEEEEe
Q 023286 52 -------------------NEYK-GDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFI 89 (284)
Q Consensus 52 -------------------g~~r-GfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~ 89 (284)
++.+ =||.|+|.+++.|....+.++|.+|.-.-..+.+
T Consensus 245 sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 245 SDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred cchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 1122 2799999999999999999999998754433333
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.29 E-value=25 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHh
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFG 27 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~ 27 (284)
....+|-|.|||..+.+++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3467899999999999999987543
No 217
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=30.07 E-value=27 Score=25.02 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=20.4
Q ss_pred ceecCCCCCe-----eecccccCccCCCCCCC
Q 023286 215 DWSCPMCGNI-----NWAKRTKCNICNTNKPG 241 (284)
Q Consensus 215 dw~c~~c~~~-----n~~~r~~c~~c~~~~~~ 241 (284)
+..|+.|+|. .-+..+.|+-|++---.
T Consensus 19 ~VkCpdC~N~q~vFshast~V~C~~CG~~l~~ 50 (67)
T COG2051 19 RVKCPDCGNEQVVFSHASTVVTCLICGTTLAE 50 (67)
T ss_pred EEECCCCCCEEEEeccCceEEEecccccEEEe
Confidence 6789999974 34567899999975433
No 218
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.45 E-value=1.5e+02 Score=22.15 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=38.1
Q ss_pred EEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023286 8 VYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 8 IyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
.|+--++...+..+|++.+++.-.|...+ |..+.-+. ..-=|||++..-++|.+...
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~------VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEK------VNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEE------EEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 45556788999999999998743343322 55544432 11249999999888887654
No 219
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=29.27 E-value=17 Score=34.28 Aligned_cols=12 Identities=42% Similarity=1.281 Sum_probs=10.0
Q ss_pred CCCceecCCCCC
Q 023286 212 GPNDWSCPMCGN 223 (284)
Q Consensus 212 ~~~dw~c~~c~~ 223 (284)
...+|.||.|+-
T Consensus 262 ~~~~wrCpkCGg 273 (403)
T COG1379 262 KSLRWRCPKCGG 273 (403)
T ss_pred hhhcccCccccc
Confidence 347999999995
No 220
>PRK00420 hypothetical protein; Validated
Probab=28.51 E-value=34 Score=27.12 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=20.6
Q ss_pred eecCCCCCeeec---ccccCccCCCCCCC
Q 023286 216 WSCPMCGNINWA---KRTKCNICNTNKPG 241 (284)
Q Consensus 216 w~c~~c~~~n~~---~r~~c~~c~~~~~~ 241 (284)
=.||.|+.+-|. ....|-.|+.+---
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCeeee
Confidence 479999999885 56789999985543
No 221
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=33 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=0.0
Q ss_pred eecCCCCCeeecccccCccCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNT 237 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~ 237 (284)
|.|..|++.--.|.-.|..|++
T Consensus 8 f~C~~CG~~s~KW~GkCp~Cg~ 29 (456)
T COG1066 8 FVCQECGYVSPKWLGKCPACGA 29 (456)
T ss_pred EEcccCCCCCccccccCCCCCC
No 222
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=27.75 E-value=35 Score=29.43 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.3
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
..|-|.|. .|-+.|-+--..||-|..-+-
T Consensus 21 Deg~WdCs--vCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 21 DEGKWDCS--VCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred ccCceeee--eeeecchhhhhheeeeccccc
Confidence 46899999 899999999999999987654
No 223
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=27.73 E-value=57 Score=26.38 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=10.3
Q ss_pred ceecCCCCCeeec
Q 023286 215 DWSCPMCGNINWA 227 (284)
Q Consensus 215 dw~c~~c~~~n~~ 227 (284)
.|.|+.|...|.-
T Consensus 20 ~w~C~~C~q~N~f 32 (131)
T PF09779_consen 20 NWTCPHCEQYNGF 32 (131)
T ss_pred eeECCCCCCccCc
Confidence 5999999977753
No 224
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=26.98 E-value=34 Score=21.64 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=9.6
Q ss_pred CceecCCCCCeeec
Q 023286 214 NDWSCPMCGNINWA 227 (284)
Q Consensus 214 ~dw~c~~c~~~n~~ 227 (284)
.-|+|+-|...|..
T Consensus 23 ~~w~C~~C~~~N~l 36 (40)
T PF04810_consen 23 KTWICNFCGTKNPL 36 (40)
T ss_dssp TEEEETTT--EEE-
T ss_pred CEEECcCCCCcCCC
Confidence 48999999998864
No 225
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=26.70 E-value=23 Score=30.16 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=13.4
Q ss_pred CCCCCCCCCCcCcCChH
Q 023286 245 GGVRGGRGGGYKELDEE 261 (284)
Q Consensus 245 ~~~~~g~~gg~~~~~~~ 261 (284)
.+.|-|+||||.||--+
T Consensus 123 ~G~RLG~GgGyYDR~L~ 139 (182)
T PRK10333 123 YGQRLGMGGGFYDRTLQ 139 (182)
T ss_pred CCCcccCCcchHHHHHH
Confidence 35889999999987543
No 226
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.16 E-value=33 Score=30.12 Aligned_cols=18 Identities=28% Similarity=0.798 Sum_probs=13.9
Q ss_pred CCCCceecCCCCCeeecc
Q 023286 211 FGPNDWSCPMCGNINWAK 228 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~ 228 (284)
+-=..|+||+|++..+..
T Consensus 44 ~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 44 LFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eeeeEEECCCCCCccccc
Confidence 344789999999987654
No 227
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.18 E-value=37 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=25.0
Q ss_pred CceecCCCCCee--ecccccCccCCCCCCCCCC
Q 023286 214 NDWSCPMCGNIN--WAKRTKCNICNTNKPGHNE 244 (284)
Q Consensus 214 ~dw~c~~c~~~n--~~~r~~c~~c~~~~~~~~~ 244 (284)
=-..||.|+.+- ..+...|-.|++|-.-+..
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCcCccCch
Confidence 356799999776 7888999999999876543
No 228
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=25.13 E-value=33 Score=35.46 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=20.9
Q ss_pred CCCCCCCCCCccCCccccccccccccC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCG 171 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~ 171 (284)
..|-|.|. +|-..--+-|..|.-|=
T Consensus 45 PtGpWfCr--KCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 45 PTGPWFCR--KCESQERAARVRCELCP 69 (900)
T ss_pred CCCchhhh--hhhhhhhhccceeeccc
Confidence 56899999 99888878888888883
No 229
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.54 E-value=80 Score=28.71 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=32.5
Q ss_pred ecCCCCCeeecccccCccCCCCCCCCCCCCCCCCCCCCcCcCChHHHHHH
Q 023286 217 SCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEET 266 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~ 266 (284)
.|-.|+...-+...+|-.|+...-..... +-+ =+--++|+|++|+
T Consensus 84 ~C~~CGa~V~~~e~~Cp~C~StnI~r~Dd---SkW--l~~ir~d~E~~e~ 128 (314)
T PF09567_consen 84 KCNNCGANVSRLEESCPNCGSTNIKRKDD---SKW--LFGIRSDDEFEEY 128 (314)
T ss_pred hhccccceeeehhhcCCCCCcccccccCC---cce--ecccccHHHHHHh
Confidence 58899999999999999998765543331 112 2445689999885
No 230
>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.
Probab=24.45 E-value=42 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.684 Sum_probs=17.3
Q ss_pred CCCCCCCccCCc----cccccccccccCC
Q 023286 148 DWMCPNTSCSNV----NFAFRGVCNRCGT 172 (284)
Q Consensus 148 DW~C~~~~Cg~~----NF~~R~~C~rC~~ 172 (284)
...||++.|+.. +...|..|=+|+.
T Consensus 18 rk~CP~~~CG~GvFMA~H~dR~~CGKCg~ 46 (47)
T PF01599_consen 18 RKECPSPRCGAGVFMAEHKDRHYCGKCGY 46 (47)
T ss_dssp SEE-TSTTTTSSSEEEE-SSEEEETTTSS
T ss_pred hhcCCCcccCCceEeeecCCCccCCCccc
Confidence 457888889874 4567888999874
No 231
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=24.11 E-value=35 Score=33.78 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=10.4
Q ss_pred CCceecCCCCCe
Q 023286 213 PNDWSCPMCGNI 224 (284)
Q Consensus 213 ~~dw~c~~c~~~ 224 (284)
|.||.||.|+..
T Consensus 456 p~~~~cp~c~~~ 467 (479)
T PRK05452 456 PDNFLCPECSLG 467 (479)
T ss_pred CCCCcCcCCCCc
Confidence 689999999965
No 232
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.55 E-value=41 Score=23.13 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=9.8
Q ss_pred cCCCCCee--ecccccCccCCCCC
Q 023286 218 CPMCGNIN--WAKRTKCNICNTNK 239 (284)
Q Consensus 218 c~~c~~~n--~~~r~~c~~c~~~~ 239 (284)
|+.|+-.- --..+.|..|++|-
T Consensus 8 C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 8 CPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred ChhhCCcccCCCCEEECCCCCCcc
Confidence 44444332 23444555555543
No 233
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=2.3e+02 Score=22.14 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023286 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai 72 (284)
.+|..++++.|.-. -.|+.+..++.. |+++++.+.++.-++|
T Consensus 27 PE~~a~lk~agi~n---------YSIfLde~~n~l--Fgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAGIRN---------YSIFLDEEENLL--FGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcCCce---------eEEEecCCcccE--EEEEEEcChHHHHHHH
Confidence 46778888888544 337777765555 9999999666555554
No 234
>COG4640 Predicted membrane protein [Function unknown]
Probab=22.80 E-value=42 Score=32.41 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=21.5
Q ss_pred ecCCCCCeeecccccCccCCCCCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
.|+.|+..+-..-..|-+|+.+-...
T Consensus 3 fC~kcG~qk~Ed~~qC~qCG~~~t~~ 28 (465)
T COG4640 3 FCPKCGSQKAEDDVQCTQCGHKFTSR 28 (465)
T ss_pred cccccccccccccccccccCCcCCch
Confidence 49999988888888899999876653
No 235
>COG4907 Predicted membrane protein [Function unknown]
Probab=22.66 E-value=1.8e+02 Score=28.93 Aligned_cols=47 Identities=13% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHHhCCce
Q 023286 20 DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED----PHAALAAVEWFNNKD 79 (284)
Q Consensus 20 ~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s----~e~A~~Ai~~lng~~ 79 (284)
+..+.+++.|-.++..+ ...|+|..+ +..|.+ .+.+.+||..++-.+
T Consensus 489 ~aFKnfLsd~s~lke~~---pesI~~W~~----------ylVYatALGV~dkVvkam~~~~~~e 539 (595)
T COG4907 489 QAFKNFLSDYSQLKEAK---PESIHLWEQ----------YLVYATALGVSDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHhHHHHhhCC---CcceehHhh----------hhhhhhhhccHHHHHHHHHHhCcHh
Confidence 34556666666666542 222444332 222322 356667777655443
No 236
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=22.52 E-value=53 Score=26.79 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.5
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
+.|+..||.|+..
T Consensus 41 KdG~v~CPvC~~~ 53 (131)
T COG1645 41 KDGEVFCPVCGYR 53 (131)
T ss_pred eCCeEECCCCCce
Confidence 4589999999963
No 237
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=22.51 E-value=34 Score=28.88 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=12.9
Q ss_pred CCCCCCCCCCcCcCCh
Q 023286 245 GGVRGGRGGGYKELDE 260 (284)
Q Consensus 245 ~~~~~g~~gg~~~~~~ 260 (284)
.+.|-|+||||.||--
T Consensus 129 ~G~RLG~GgGyYDR~L 144 (181)
T TIGR02727 129 RGYRLGYGGGYYDRFL 144 (181)
T ss_pred CCccccCCcchHHHHH
Confidence 3588999999998743
No 238
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.16 E-value=66 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=15.5
Q ss_pred ceecCCCCCeeecccccCccCCCCC
Q 023286 215 DWSCPMCGNINWAKRTKCNICNTNK 239 (284)
Q Consensus 215 dw~c~~c~~~n~~~r~~c~~c~~~~ 239 (284)
--.|..|++. ...-..|..|+..+
T Consensus 240 ~l~Ch~Cg~~-~~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 240 KLRCHYCGYQ-EPIPKTCPQCGSED 263 (505)
T ss_pred eEEcCCCcCc-CCCCCCCCCCCCCe
Confidence 4567777765 55556777776654
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=21.31 E-value=2e+02 Score=26.77 Aligned_cols=79 Identities=9% Similarity=0.205 Sum_probs=53.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecC-------CCCCcccEEEEEeCCHHHHHHHH----H
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK-------TTNEYKGDATVTYEDPHAALAAV----E 73 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk-------~tg~~rGfaFV~F~s~e~A~~Ai----~ 73 (284)
+..|.+.||..+++--++...|.+||.|++ |.++.+. +..+......+.|-+.+.+...- +
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIES--------iYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIES--------IYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeE--------EEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 345777889988888888888999999999 8888765 11223346788998888766543 2
Q ss_pred HhCC--ceecCceEEEEecc
Q 023286 74 WFNN--KDFHGNLIGVFIAE 91 (284)
Q Consensus 74 ~lng--~~l~Gr~i~V~~a~ 91 (284)
.|.. ..|.-..|.|.+..
T Consensus 87 rLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHHhcCCcceeEEEEE
Confidence 2221 23555667777655
No 240
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=21.26 E-value=32 Score=30.05 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=13.0
Q ss_pred CCCCCCCCCcCcCChH
Q 023286 246 GVRGGRGGGYKELDEE 261 (284)
Q Consensus 246 ~~~~g~~gg~~~~~~~ 261 (284)
+.|-||||||.||=-+
T Consensus 146 G~RLG~GgGyYDR~L~ 161 (211)
T PLN02812 146 GRRLGRGGGYYDTFLS 161 (211)
T ss_pred CCcCcCCCchHHHHHH
Confidence 5889999999988543
No 241
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=21.02 E-value=55 Score=23.26 Aligned_cols=23 Identities=43% Similarity=0.927 Sum_probs=16.0
Q ss_pred eecCCCCC-------eeecccccCccCCCC
Q 023286 216 WSCPMCGN-------INWAKRTKCNICNTN 238 (284)
Q Consensus 216 w~c~~c~~-------~n~~~r~~c~~c~~~ 238 (284)
-.||.|+- .+=..+..|.+|++.
T Consensus 7 KPCPFCG~~~~~v~~~~g~~~v~C~~CgA~ 36 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYYRAKCNGCESR 36 (64)
T ss_pred cCCCCCCCceeEEEecCceEEEEcCCCCcC
Confidence 35888872 333457899999984
No 242
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.83 E-value=72 Score=25.91 Aligned_cols=29 Identities=28% Similarity=0.604 Sum_probs=20.9
Q ss_pred CCCceecCCCCCeeecc------------------------cccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAK------------------------RTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~------------------------r~~c~~c~~~~~~ 241 (284)
.+.-|.|..|+.. |.. ...|-.|+.....
T Consensus 67 ~p~~~~C~~CG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~ 119 (135)
T PRK03824 67 EEAVLKCRNCGNE-WSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFE 119 (135)
T ss_pred cceEEECCCCCCE-EecccccccccccccccccccccccccCcCCcCCCCCCcE
Confidence 3578999999955 433 2559999976544
No 243
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=20.74 E-value=64 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=19.5
Q ss_pred CceecCCCCCeeecc-------cccCccCCCCCCC
Q 023286 214 NDWSCPMCGNINWAK-------RTKCNICNTNKPG 241 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~-------r~~c~~c~~~~~~ 241 (284)
.=..|+.|+++.-.- -..|.-|++.+|-
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCCCcc
Confidence 347899999764321 2479999988774
No 244
>PF11261 IRF-2BP1_2: Interferon regulatory factor 2-binding protein zinc finger; InterPro: IPR022750 IRF-2BP1 and IRF-2BP2 are nuclear transcriptional repressor proteins and can inhibit both enhancer-activated and basal transcription. They both contain N-terminal zinc finger and C-terminal RING finger domains []. This entry represents the N-terminal zinc finger domain of IRF-2BP1 and IRF-2BP2.
Probab=20.58 E-value=42 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.735 Sum_probs=13.1
Q ss_pred cccccCccCCCCCCC
Q 023286 227 AKRTKCNICNTNKPG 241 (284)
Q Consensus 227 ~~r~~c~~c~~~~~~ 241 (284)
++|+.|+-|..||.-
T Consensus 1 s~Rq~CyLCdlPr~P 15 (54)
T PF11261_consen 1 SRRQQCYLCDLPRMP 15 (54)
T ss_pred CCceeEEeccCCCCc
Confidence 578999999999974
No 245
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=20.42 E-value=1.6e+02 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHhccCCeeecC
Q 023286 16 GTDEDMLAEYFGTIGLLKKDK 36 (284)
Q Consensus 16 ~~te~dL~~~F~~~G~v~~~~ 36 (284)
..+.+.|+.+|.+||.|-...
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~ 115 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAW 115 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEe
Confidence 778899999999999987543
No 246
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=20.21 E-value=60 Score=30.06 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
.+-||.|. .|++.--.|-..|-+|+.--.
T Consensus 351 ~~p~~~c~--~cg~~~~~~~~~c~~c~~~~~ 379 (389)
T PRK11788 351 RKPRYRCR--NCGFTARTLYWHCPSCKAWET 379 (389)
T ss_pred CCCCEECC--CCCCCCccceeECcCCCCccC
Confidence 45689999 899999999999999987644
No 247
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=20.12 E-value=56 Score=24.71 Aligned_cols=13 Identities=31% Similarity=0.933 Sum_probs=10.8
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
..|-|.|.+|++.
T Consensus 50 a~GIW~C~kCg~~ 62 (89)
T COG1997 50 ATGIWKCRKCGAK 62 (89)
T ss_pred ccCeEEcCCCCCe
Confidence 4579999999876
Done!