Query 023286
Match_columns 284
No_of_seqs 391 out of 2205
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-20 3.6E-25 145.6 11.7 82 3-92 17-98 (99)
2 2lxi_A RNA-binding protein 10; 99.8 7.4E-21 2.5E-25 144.1 8.2 83 5-95 1-85 (91)
3 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.2E-20 2.5E-24 151.4 12.5 85 3-95 37-121 (156)
4 3s8s_A Histone-lysine N-methyl 99.8 9.9E-20 3.4E-24 142.9 11.6 85 2-94 3-87 (110)
5 2cpe_A RNA-binding protein EWS 99.8 1.8E-19 6.1E-24 141.0 12.3 93 3-95 13-105 (113)
6 2dnz_A Probable RNA-binding pr 99.8 2.5E-19 8.7E-24 135.6 12.0 86 2-95 2-87 (95)
7 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-19 5.9E-24 138.4 11.0 88 1-96 8-95 (102)
8 1x5t_A Splicing factor 3B subu 99.8 2.2E-19 7.6E-24 136.2 11.4 86 2-95 2-88 (96)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.4E-24 138.6 10.7 89 1-97 8-96 (102)
10 1whw_A Hypothetical protein ri 99.8 3.7E-19 1.3E-23 135.8 12.1 87 2-96 5-91 (99)
11 2lkz_A RNA-binding protein 5; 99.8 7.3E-20 2.5E-24 140.1 8.1 81 6-92 10-94 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.8E-19 9.6E-24 133.0 11.1 83 3-93 4-86 (87)
13 2dgo_A Cytotoxic granule-assoc 99.8 9.7E-19 3.3E-23 137.2 14.2 86 3-96 13-98 (115)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.2E-19 1.1E-23 132.2 10.7 83 1-91 3-85 (85)
15 3md1_A Nuclear and cytoplasmic 99.8 4.7E-19 1.6E-23 130.7 11.4 82 5-94 1-82 (83)
16 2dgs_A DAZ-associated protein 99.8 6.4E-19 2.2E-23 134.6 11.7 85 3-96 8-92 (99)
17 2cq0_A Eukaryotic translation 99.8 4.4E-19 1.5E-23 136.5 10.9 86 3-96 13-98 (103)
18 2cqd_A RNA-binding region cont 99.8 9E-19 3.1E-23 137.7 12.6 84 3-95 15-98 (116)
19 3q2s_C Cleavage and polyadenyl 99.8 5.2E-20 1.8E-24 162.4 6.1 82 4-93 67-150 (229)
20 2cpz_A CUG triplet repeat RNA- 99.8 6.4E-19 2.2E-23 138.3 11.7 86 3-96 23-108 (115)
21 3ex7_B RNA-binding protein 8A; 99.8 3.4E-19 1.2E-23 142.0 10.3 86 3-96 20-105 (126)
22 2cpf_A RNA binding motif prote 99.8 6E-19 2.1E-23 134.4 11.0 87 2-96 2-91 (98)
23 2la6_A RNA-binding protein FUS 99.8 5.7E-19 1.9E-23 135.0 10.5 89 3-91 11-99 (99)
24 2dnm_A SRP46 splicing factor; 99.8 5.1E-19 1.8E-23 136.1 10.1 85 3-95 11-95 (103)
25 2x1f_A MRNA 3'-END-processing 99.8 8.3E-19 2.8E-23 133.3 10.9 84 4-95 1-84 (96)
26 1x5u_A Splicing factor 3B subu 99.8 9.6E-19 3.3E-23 134.9 11.1 86 3-96 13-98 (105)
27 2do4_A Squamous cell carcinoma 99.8 1.4E-18 4.9E-23 132.9 11.8 84 3-95 15-98 (100)
28 1x4h_A RNA-binding protein 28; 99.8 1.6E-18 5.4E-23 134.8 11.8 86 3-96 13-104 (111)
29 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 4.6E-23 134.3 11.3 85 3-95 21-105 (106)
30 3p5t_L Cleavage and polyadenyl 99.8 2.6E-19 8.8E-24 134.8 6.9 82 6-95 2-85 (90)
31 2cqc_A Arginine/serine-rich sp 99.8 1.2E-18 4.2E-23 131.6 10.7 82 3-92 13-94 (95)
32 2fy1_A RNA-binding motif prote 99.8 2.2E-18 7.5E-23 136.2 12.5 85 2-95 4-88 (116)
33 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-18 3.7E-23 131.8 10.1 81 3-91 14-94 (94)
34 1u6f_A Tcubp1, RNA-binding pro 99.8 2.8E-18 9.6E-23 138.9 13.1 84 4-95 41-124 (139)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-18 4E-23 134.6 10.3 86 2-95 10-98 (106)
36 2cph_A RNA binding motif prote 99.8 1.7E-18 5.8E-23 133.8 11.2 86 3-96 13-100 (107)
37 2dng_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 132.7 11.6 83 3-95 13-95 (103)
38 2div_A TRNA selenocysteine ass 99.8 1.4E-18 4.7E-23 132.6 10.4 85 2-94 6-95 (99)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-18 8.3E-23 132.6 11.8 85 3-96 13-100 (105)
40 2do0_A HnRNP M, heterogeneous 99.8 5.5E-18 1.9E-22 132.5 13.7 84 3-95 13-96 (114)
41 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-18 6.6E-23 134.4 10.9 85 3-95 24-108 (110)
42 4a8x_A RNA-binding protein wit 99.8 1.6E-18 5.6E-23 129.0 10.1 84 3-94 2-86 (88)
43 3ns6_A Eukaryotic translation 99.8 3.8E-19 1.3E-23 136.8 6.5 83 4-94 5-94 (100)
44 4f25_A Polyadenylate-binding p 99.8 2.4E-18 8.3E-23 135.5 11.2 82 4-95 4-85 (115)
45 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-18 7.2E-23 133.0 10.4 83 3-95 13-96 (104)
46 2dhg_A TRNA selenocysteine ass 99.8 2.2E-18 7.7E-23 132.6 10.5 84 3-95 7-92 (104)
47 2d9p_A Polyadenylate-binding p 99.8 2.5E-18 8.6E-23 132.2 10.8 84 3-96 13-96 (103)
48 2jrs_A RNA-binding protein 39; 99.8 2.5E-18 8.6E-23 134.1 10.3 84 3-94 24-107 (108)
49 2dh8_A DAZ-associated protein 99.8 2.8E-18 9.5E-23 132.4 10.2 84 3-95 14-97 (105)
50 2ek1_A RNA-binding protein 12; 99.8 1.6E-18 5.5E-23 131.1 8.4 82 3-92 13-94 (95)
51 2cqp_A RNA-binding protein 12; 99.8 2.5E-18 8.4E-23 130.9 9.4 83 3-93 13-95 (98)
52 3ucg_A Polyadenylate-binding p 99.8 5.1E-18 1.8E-22 126.7 10.8 82 4-94 5-86 (89)
53 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-17 3.4E-22 128.8 12.7 84 3-96 13-96 (103)
54 3ulh_A THO complex subunit 4; 99.8 5.6E-18 1.9E-22 131.0 11.3 80 3-91 27-106 (107)
55 2cq3_A RNA-binding protein 9; 99.8 1.1E-17 3.9E-22 128.5 12.8 85 3-97 13-97 (103)
56 2ywk_A Putative RNA-binding pr 99.7 6.1E-18 2.1E-22 127.9 10.4 81 3-92 14-94 (95)
57 2kxn_B Transformer-2 protein h 99.7 2.6E-18 9E-23 138.4 8.8 85 3-95 44-128 (129)
58 2dgx_A KIAA0430 protein; RRM d 99.7 7.6E-18 2.6E-22 128.3 10.9 82 3-95 7-92 (96)
59 3s7r_A Heterogeneous nuclear r 99.7 9.2E-18 3.2E-22 125.0 11.0 79 3-90 9-87 (87)
60 2dgv_A HnRNP M, heterogeneous 99.7 8.2E-18 2.8E-22 126.4 10.7 84 2-95 5-88 (92)
61 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.9E-22 127.5 12.6 84 3-96 13-96 (103)
62 3n9u_C Cleavage and polyadenyl 99.7 5.2E-18 1.8E-22 141.1 10.4 82 4-93 54-137 (156)
63 2khc_A Testis-specific RNP-typ 99.7 3.5E-18 1.2E-22 134.6 8.8 81 3-91 38-118 (118)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.2E-18 3.2E-22 140.2 11.5 86 3-96 70-155 (165)
65 2dgu_A Heterogeneous nuclear r 99.7 2E-17 6.7E-22 127.4 12.4 79 3-97 9-87 (103)
66 2dgw_A Probable RNA-binding pr 99.7 1.5E-17 5.1E-22 125.0 11.5 82 3-95 8-89 (91)
67 2rs2_A Musashi-1, RNA-binding 99.7 8.2E-18 2.8E-22 131.3 10.3 85 2-95 22-106 (109)
68 2m2b_A RNA-binding protein 10; 99.7 2.8E-18 9.7E-23 138.1 7.8 86 3-95 21-110 (131)
69 2dis_A Unnamed protein product 99.7 1.1E-17 3.9E-22 129.7 11.0 87 2-96 5-95 (109)
70 1x4b_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 131.5 10.8 82 5-95 27-108 (116)
71 1p1t_A Cleavage stimulation fa 99.7 6.8E-18 2.3E-22 129.7 9.3 84 4-95 7-90 (104)
72 1x4e_A RNA binding motif, sing 99.7 1.4E-18 4.9E-23 128.9 4.7 82 2-91 2-83 (85)
73 2lcw_A RNA-binding protein FUS 99.6 2.1E-19 7.2E-24 141.4 0.0 94 2-95 4-97 (116)
74 2cpy_A RNA-binding protein 12; 99.7 2.6E-18 8.9E-23 135.1 6.3 82 3-94 13-95 (114)
75 2cpi_A CCR4-NOT transcription 99.7 9.4E-18 3.2E-22 131.2 9.4 85 3-95 13-103 (111)
76 3pgw_S U1-70K; protein-RNA com 99.7 2.4E-17 8.1E-22 158.2 14.1 84 4-95 101-184 (437)
77 1x4a_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 127.4 12.2 82 3-95 20-101 (109)
78 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.7E-22 137.1 11.0 84 4-95 69-152 (158)
79 1s79_A Lupus LA protein; RRM, 99.7 7.9E-18 2.7E-22 130.5 8.5 80 3-92 9-88 (103)
80 1wez_A HnRNP H', FTP-3, hetero 99.7 1E-17 3.6E-22 129.4 9.1 81 3-94 13-93 (102)
81 2cq4_A RNA binding motif prote 99.7 8.5E-18 2.9E-22 131.7 8.7 82 5-95 25-106 (114)
82 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-17 4.6E-22 129.9 9.7 82 2-97 13-96 (105)
83 2mss_A Protein (musashi1); RNA 99.7 4.4E-18 1.5E-22 123.3 6.5 75 7-90 1-75 (75)
84 2fc9_A NCL protein; structure 99.7 2.1E-17 7.2E-22 126.5 10.7 82 2-95 12-93 (101)
85 2jwn_A Embryonic polyadenylate 99.7 2.1E-17 7.3E-22 131.1 11.0 82 5-95 36-117 (124)
86 2fc8_A NCL protein; structure 99.7 1.8E-17 6E-22 127.1 10.1 82 3-95 13-94 (102)
87 2kt5_A RNA and export factor-b 99.7 3.4E-17 1.2E-21 130.2 11.9 84 3-95 33-116 (124)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.8E-17 6.2E-22 133.7 10.2 80 3-90 61-140 (140)
89 1x4c_A Splicing factor, argini 99.7 6.6E-17 2.3E-21 125.7 12.9 77 4-95 14-95 (108)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.4E-18 2.2E-22 122.7 6.7 76 6-90 1-76 (77)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.1E-18 1.7E-22 130.2 6.1 82 3-94 17-99 (100)
92 2dnq_A RNA-binding protein 4B; 99.7 6.4E-17 2.2E-21 121.4 11.3 77 3-95 6-82 (90)
93 2cpx_A Hypothetical protein FL 99.7 9.9E-18 3.4E-22 131.2 7.0 86 3-96 23-108 (115)
94 2ki2_A SS-DNA binding protein 99.7 4.4E-18 1.5E-22 127.5 4.7 81 6-95 2-82 (90)
95 1wg5_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 126.7 9.6 84 3-95 13-96 (104)
96 1x5o_A RNA binding motif, sing 99.7 4.2E-17 1.4E-21 127.6 10.0 82 3-93 23-112 (114)
97 2err_A Ataxin-2-binding protei 99.7 4.7E-17 1.6E-21 126.9 10.1 82 3-94 27-108 (109)
98 2db1_A Heterogeneous nuclear r 99.7 2.9E-17 9.9E-22 130.1 8.9 81 4-94 16-99 (118)
99 3r27_A HnRNP L, heterogeneous 99.7 5.1E-17 1.7E-21 125.5 10.0 79 2-94 18-98 (100)
100 2lea_A Serine/arginine-rich sp 99.7 1.3E-17 4.3E-22 135.4 6.9 84 4-95 46-129 (135)
101 2cq1_A PTB-like protein L; RRM 99.7 8.3E-17 2.8E-21 124.5 11.1 82 2-97 12-95 (101)
102 1why_A Hypothetical protein ri 99.7 5.5E-17 1.9E-21 123.4 10.0 79 3-95 15-95 (97)
103 1fj7_A Nucleolin RBD1, protein 99.7 6.2E-18 2.1E-22 129.5 4.6 82 4-95 16-97 (101)
104 2nlw_A Eukaryotic translation 99.7 4.5E-17 1.5E-21 126.1 9.1 80 5-94 15-101 (105)
105 2ad9_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 128.6 10.3 82 2-97 28-111 (119)
106 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 132.8 6.2 82 4-94 24-105 (124)
107 2hgl_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 133.4 8.3 81 4-94 43-126 (136)
108 2dgt_A RNA-binding protein 30; 99.7 1.9E-16 6.5E-21 119.3 11.7 77 3-95 8-84 (92)
109 1wex_A Hypothetical protein (r 99.7 6.8E-17 2.3E-21 125.5 9.3 81 2-96 12-94 (104)
110 1x4g_A Nucleolysin TIAR; struc 99.7 1.6E-16 5.4E-21 123.5 11.2 80 3-96 23-102 (109)
111 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-17 6.2E-22 119.8 5.2 75 7-90 1-75 (75)
112 2wbr_A GW182, gawky, LD47780P; 99.7 9.8E-17 3.3E-21 120.7 9.2 74 4-91 6-79 (89)
113 1x4d_A Matrin 3; structural ge 99.7 5.8E-17 2E-21 125.6 7.9 79 2-94 12-93 (102)
114 2dnn_A RNA-binding protein 12; 99.7 4.3E-17 1.5E-21 127.8 7.3 78 5-93 16-93 (109)
115 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.3E-21 120.4 9.6 78 3-95 6-85 (93)
116 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-16 4.4E-21 121.4 9.7 79 4-95 18-96 (97)
117 2hvz_A Splicing factor, argini 99.7 1.2E-16 4.1E-21 122.3 9.4 77 6-95 1-77 (101)
118 2krb_A Eukaryotic translation 99.7 3E-17 1E-21 120.9 5.8 74 5-88 1-81 (81)
119 2cpj_A Non-POU domain-containi 99.7 1.5E-16 5.3E-21 121.4 9.8 79 3-95 13-91 (99)
120 1nu4_A U1A RNA binding domain; 99.7 6.7E-17 2.3E-21 122.6 7.8 83 2-95 5-91 (97)
121 2cpd_A Apobec-1 stimulating pr 99.7 4E-16 1.4E-20 119.1 12.1 77 3-95 13-91 (99)
122 1fjc_A Nucleolin RBD2, protein 99.7 8.1E-17 2.8E-21 122.0 8.1 80 3-95 14-93 (96)
123 2jvr_A Nucleolar protein 3; RN 99.7 1E-16 3.5E-21 126.0 8.9 80 3-94 26-106 (111)
124 2hgn_A Heterogeneous nuclear r 99.7 1.9E-17 6.4E-22 135.4 4.4 81 4-95 45-125 (139)
125 2a3j_A U1 small nuclear ribonu 99.7 1.5E-16 5.3E-21 127.9 9.7 81 3-94 27-111 (127)
126 4f02_A Polyadenylate-binding p 99.7 2.5E-16 8.6E-21 136.3 11.6 84 3-94 13-96 (213)
127 2la4_A Nuclear and cytoplasmic 99.7 1.4E-16 4.8E-21 121.9 8.7 76 4-93 26-101 (101)
128 2kvi_A Nuclear polyadenylated 99.7 1.7E-16 5.7E-21 120.7 9.0 78 2-95 7-85 (96)
129 2dnp_A RNA-binding protein 14; 99.7 3.4E-16 1.2E-20 117.4 10.5 77 3-95 7-83 (90)
130 2xnq_A Nuclear polyadenylated 99.7 4.1E-16 1.4E-20 119.1 11.0 77 2-94 19-96 (97)
131 1wf1_A RNA-binding protein RAL 99.7 3.8E-16 1.3E-20 121.6 10.6 76 4-95 26-102 (110)
132 3lqv_A PRE-mRNA branch site pr 99.7 3.2E-16 1.1E-20 122.7 10.2 81 3-94 6-86 (115)
133 2lmi_A GRSF-1, G-rich sequence 99.7 4.1E-17 1.4E-21 126.7 5.0 82 3-94 9-93 (107)
134 2e5g_A U6 snRNA-specific termi 99.7 3.7E-16 1.3E-20 118.2 10.2 79 3-95 6-84 (94)
135 1fxl_A Paraneoplastic encephal 99.7 5.1E-16 1.7E-20 127.3 11.7 83 4-94 1-83 (167)
136 2f3j_A RNA and export factor b 99.7 1.9E-16 6.4E-21 134.3 9.4 83 3-94 86-168 (177)
137 1b7f_A Protein (SXL-lethal pro 99.7 3.4E-16 1.2E-20 128.9 10.6 84 4-95 2-85 (168)
138 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-16 4.2E-21 127.8 7.6 84 3-94 21-106 (123)
139 2jvo_A Nucleolar protein 3; nu 99.7 3.8E-16 1.3E-20 121.7 10.2 77 3-95 29-105 (108)
140 2xs2_A Deleted in azoospermia- 99.7 1.3E-16 4.5E-21 122.3 7.3 81 4-95 8-88 (102)
141 2ytc_A PRE-mRNA-splicing facto 99.7 4.1E-16 1.4E-20 115.4 9.5 75 3-91 10-85 (85)
142 3md3_A Nuclear and cytoplasmic 99.6 7.4E-16 2.5E-20 126.2 11.4 82 3-92 85-166 (166)
143 3egn_A RNA-binding protein 40; 99.6 2.1E-16 7.3E-21 128.6 7.5 90 3-95 43-132 (143)
144 1x4f_A Matrin 3; structural ge 99.6 1.8E-16 6E-21 124.9 6.4 80 2-95 22-104 (112)
145 2e44_A Insulin-like growth fac 99.6 4.8E-16 1.6E-20 117.7 8.6 79 4-94 14-93 (96)
146 3beg_B Splicing factor, argini 99.6 5.3E-16 1.8E-20 122.1 8.7 75 4-93 15-94 (115)
147 1wg1_A KIAA1579 protein, homol 99.6 7.9E-16 2.7E-20 115.1 9.2 77 3-94 3-79 (88)
148 2i2y_A Fusion protein consists 99.6 5.4E-16 1.9E-20 127.2 9.0 79 3-94 71-149 (150)
149 2qfj_A FBP-interacting repress 99.6 1.5E-15 5.2E-20 130.1 11.9 84 4-95 124-207 (216)
150 2hgm_A HNRPF protein, heteroge 99.6 2.4E-16 8.3E-21 126.7 6.0 79 4-93 41-121 (126)
151 1x5p_A Negative elongation fac 99.6 3.3E-15 1.1E-19 113.6 12.1 78 3-96 13-90 (97)
152 2yh0_A Splicing factor U2AF 65 99.6 1.7E-15 5.8E-20 128.1 11.6 85 3-95 112-196 (198)
153 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 128.7 10.7 84 4-96 103-186 (196)
154 1whx_A Hypothetical protein ri 99.6 6.9E-16 2.3E-20 120.8 8.1 77 4-94 9-85 (111)
155 2j8a_A Histone-lysine N-methyl 99.6 9.8E-16 3.4E-20 122.9 8.9 78 6-91 3-94 (136)
156 2cjk_A Nuclear polyadenylated 99.6 6.6E-16 2.2E-20 127.2 8.0 81 5-94 87-167 (167)
157 2g4b_A Splicing factor U2AF 65 99.6 1.8E-15 6.1E-20 125.2 10.6 79 5-91 94-172 (172)
158 1l3k_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 127.3 10.5 83 4-95 12-94 (196)
159 2cq2_A Hypothetical protein LO 99.6 1.7E-15 5.7E-20 119.6 8.7 80 2-95 22-108 (114)
160 4f02_A Polyadenylate-binding p 99.6 7E-16 2.4E-20 133.5 7.2 81 4-94 102-182 (213)
161 2diu_A KIAA0430 protein; struc 99.6 3.1E-15 1.1E-19 113.6 9.1 77 2-96 5-87 (96)
162 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4E-20 113.9 6.6 78 3-95 3-80 (88)
163 3zzy_A Polypyrimidine tract-bi 99.6 6.3E-15 2.2E-19 118.9 11.0 77 6-95 29-108 (130)
164 3d2w_A TAR DNA-binding protein 99.6 4E-15 1.4E-19 111.9 9.2 76 3-95 9-86 (89)
165 3nmr_A Cugbp ELAV-like family 99.6 5.2E-15 1.8E-19 122.4 10.6 85 3-95 1-90 (175)
166 1b7f_A Protein (SXL-lethal pro 99.6 5.8E-15 2E-19 121.4 10.8 80 3-90 87-168 (168)
167 1sjr_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 124.0 10.3 77 6-94 47-125 (164)
168 2qfj_A FBP-interacting repress 99.6 2.7E-15 9.1E-20 128.6 8.6 81 5-93 28-108 (216)
169 2pe8_A Splicing factor 45; RRM 99.6 9.5E-15 3.3E-19 113.6 10.5 83 2-92 5-93 (105)
170 2hzc_A Splicing factor U2AF 65 99.6 4.8E-15 1.6E-19 109.9 8.3 72 3-89 4-86 (87)
171 2dnl_A Cytoplasmic polyadenyla 99.6 4.2E-15 1.4E-19 116.6 8.2 78 3-91 6-86 (114)
172 3md3_A Nuclear and cytoplasmic 99.6 8E-15 2.7E-19 120.0 10.0 81 6-95 1-81 (166)
173 3tyt_A Heterogeneous nuclear r 99.6 7.3E-15 2.5E-19 127.1 10.2 79 3-94 2-81 (205)
174 1fxl_A Paraneoplastic encephal 99.6 1.1E-14 3.9E-19 119.2 10.6 79 4-90 87-167 (167)
175 2e5i_A Heterogeneous nuclear r 99.6 1.4E-14 5E-19 115.9 10.6 75 7-95 27-104 (124)
176 3nmr_A Cugbp ELAV-like family 99.6 1.4E-14 4.9E-19 119.7 10.1 79 4-91 94-175 (175)
177 2bz2_A Negative elongation fac 99.6 1.6E-14 5.4E-19 115.0 9.7 78 3-96 37-114 (121)
178 2cjk_A Nuclear polyadenylated 99.6 7.2E-15 2.5E-19 120.9 8.0 80 4-93 2-81 (167)
179 1fje_B Nucleolin RBD12, protei 99.5 1.6E-14 5.4E-19 120.1 8.9 78 4-94 98-175 (175)
180 3pgw_A U1-A; protein-RNA compl 99.5 4.4E-14 1.5E-18 126.5 11.0 81 3-94 7-91 (282)
181 2ghp_A U4/U6 snRNA-associated 99.5 3.1E-14 1.1E-18 128.1 9.7 83 3-94 208-292 (292)
182 3smz_A Protein raver-1, ribonu 99.5 1E-13 3.5E-18 124.2 12.0 86 2-95 92-177 (284)
183 2voo_A Lupus LA protein; RNA-b 99.5 8.5E-14 2.9E-18 119.4 10.3 78 5-92 109-186 (193)
184 3gj8_B Nuclear pore complex pr 99.5 7E-15 2.4E-19 111.7 3.0 87 145-241 5-91 (92)
185 2adc_A Polypyrimidine tract-bi 99.5 6.4E-14 2.2E-18 122.4 9.4 79 3-94 32-111 (229)
186 3smz_A Protein raver-1, ribonu 99.5 1.2E-13 4.1E-18 123.7 10.5 83 4-95 183-266 (284)
187 3u1l_A PRE-mRNA-splicing facto 99.5 7.9E-14 2.7E-18 123.6 8.7 78 3-94 132-230 (240)
188 1fje_B Nucleolin RBD12, protei 99.5 2.5E-14 8.6E-19 118.8 5.1 83 3-95 11-93 (175)
189 2dit_A HIV TAT specific factor 99.5 3.8E-13 1.3E-17 105.1 11.0 81 3-95 13-104 (112)
190 3tyt_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 119.3 8.8 78 3-90 121-204 (205)
191 3pgw_A U1-A; protein-RNA compl 99.5 2.4E-13 8.3E-18 121.7 10.7 75 4-91 206-281 (282)
192 1qm9_A Polypyrimidine tract-bi 99.5 9.4E-14 3.2E-18 117.9 7.3 78 4-94 2-80 (198)
193 3v4m_A Splicing factor U2AF 65 99.4 2.9E-13 9.8E-18 105.1 8.3 83 3-93 3-97 (105)
194 1qm9_A Polypyrimidine tract-bi 99.4 2.5E-13 8.4E-18 115.3 8.5 78 3-93 118-197 (198)
195 2yh0_A Splicing factor U2AF 65 99.4 6.2E-14 2.1E-18 118.4 4.6 89 3-95 2-90 (198)
196 3sde_A Paraspeckle component 1 99.4 4.1E-13 1.4E-17 119.6 9.5 85 2-95 93-181 (261)
197 2adc_A Polypyrimidine tract-bi 99.4 6.9E-13 2.4E-17 115.8 10.0 78 3-93 149-228 (229)
198 2ghp_A U4/U6 snRNA-associated 99.4 5.8E-13 2E-17 119.7 9.4 83 4-95 116-199 (292)
199 2k1p_A Zinc finger RAN-binding 99.4 1.2E-13 4.2E-18 84.8 3.0 30 212-241 3-32 (33)
200 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.2E-17 103.7 9.0 82 3-92 18-108 (118)
201 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4E-17 108.0 9.2 85 4-93 3-88 (172)
202 1jmt_A Splicing factor U2AF 35 99.4 2.4E-13 8.4E-18 105.3 4.7 72 10-90 20-103 (104)
203 3sde_A Paraspeckle component 1 99.4 1.1E-12 3.8E-17 116.8 9.5 75 4-92 21-95 (261)
204 2lk0_A RNA-binding protein 5; 99.3 4.1E-13 1.4E-17 81.9 3.3 30 212-241 2-31 (32)
205 1n0z_A ZNF265; zinc finger, RN 99.3 8.4E-13 2.9E-17 86.7 4.1 36 207-242 6-43 (45)
206 3tht_A Alkylated DNA repair pr 99.3 4.1E-12 1.4E-16 118.1 8.9 76 2-91 15-97 (345)
207 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.3E-11 1.1E-15 92.7 11.4 77 5-96 10-93 (100)
208 1n0z_A ZNF265; zinc finger, RN 99.2 1.4E-11 4.7E-16 80.9 3.9 35 143-177 9-43 (45)
209 3s6e_A RNA-binding protein 39; 99.2 9.1E-11 3.1E-15 92.4 9.4 78 3-92 5-92 (114)
210 2dnr_A Synaptojanin-1; RRM dom 99.1 1.6E-10 5.6E-15 86.9 8.3 76 1-93 3-86 (91)
211 2k1p_A Zinc finger RAN-binding 99.1 4.6E-11 1.6E-15 73.3 3.3 30 145-176 3-32 (33)
212 2lk0_A RNA-binding protein 5; 99.0 3.4E-11 1.2E-15 73.3 1.2 30 145-176 2-31 (32)
213 1owx_A Lupus LA protein, SS-B, 99.0 1.7E-09 5.8E-14 85.9 8.5 75 3-91 16-94 (121)
214 1ufw_A Synaptojanin 2; RNP dom 98.9 1.6E-09 5.5E-14 81.9 7.2 75 1-92 11-94 (95)
215 3dxb_A Thioredoxin N-terminall 98.7 2.4E-08 8.1E-13 86.4 8.3 69 16-92 140-212 (222)
216 2l9w_A U4/U6 snRNA-associated- 98.0 3.2E-05 1.1E-09 59.8 9.0 72 5-90 21-97 (117)
217 3gj7_B Nuclear pore complex pr 98.0 2.8E-06 9.4E-11 64.8 3.0 93 145-241 6-98 (98)
218 3gj8_B Nuclear pore complex pr 98.0 1E-06 3.4E-11 66.5 0.0 33 212-244 5-37 (92)
219 3gj5_B Nuclear pore complex pr 97.9 4.8E-06 1.6E-10 50.9 2.8 32 210-241 2-33 (34)
220 3gj3_B Nuclear pore complex pr 97.9 6.9E-06 2.4E-10 49.9 3.0 32 210-241 2-33 (33)
221 2ebq_A Nuclear pore complex pr 97.7 5.4E-05 1.8E-09 49.6 4.5 34 210-243 6-39 (47)
222 2ebr_A Nuclear pore complex pr 97.6 6.9E-05 2.4E-09 49.1 4.0 34 211-244 7-40 (47)
223 1uw4_A UPF3X; nonsense mediate 97.5 0.00084 2.9E-08 50.2 9.6 79 6-92 2-87 (91)
224 2dhx_A Poly (ADP-ribose) polym 97.4 0.001 3.4E-08 50.8 9.6 77 3-96 6-87 (104)
225 1whv_A Poly(A)-specific ribonu 97.3 0.00069 2.4E-08 51.2 7.6 54 5-75 16-69 (100)
226 1wey_A Calcipressin 1; structu 97.2 0.0011 3.7E-08 50.7 7.1 77 4-94 4-85 (104)
227 2d9g_A YY1-associated factor 2 97.2 0.00051 1.7E-08 46.2 4.6 32 211-242 7-38 (53)
228 3ctr_A Poly(A)-specific ribonu 97.0 0.00079 2.7E-08 51.0 5.0 54 6-76 7-60 (101)
229 2l08_A Regulator of nonsense t 96.7 0.0033 1.1E-07 47.5 6.2 79 5-91 9-94 (97)
230 2ebv_A Nuclear pore complex pr 96.5 0.0017 5.7E-08 44.2 2.8 31 211-241 27-57 (57)
231 3a9j_C Mitogen-activated prote 96.4 0.0031 1.1E-07 38.2 3.5 28 213-240 6-33 (34)
232 3p3d_A Nucleoporin 53; structu 96.3 0.0068 2.3E-07 48.2 6.0 88 3-92 5-98 (132)
233 1nj3_A NPL4; NZF domain, rubre 96.3 0.0025 8.6E-08 37.8 2.7 26 214-239 5-30 (31)
234 2ebq_A Nuclear pore complex pr 96.3 0.0026 9E-08 41.5 2.9 34 143-178 6-39 (47)
235 2ebr_A Nuclear pore complex pr 96.2 0.0054 1.8E-07 40.0 4.2 34 144-179 7-40 (47)
236 1wwh_A Nucleoporin 35, nucleop 96.1 0.025 8.5E-07 44.2 8.1 70 5-90 24-94 (119)
237 3gj5_B Nuclear pore complex pr 96.0 0.0023 7.8E-08 38.9 1.4 30 145-176 4-33 (34)
238 2c6a_A Ubiquitin-protein ligas 96.0 0.0039 1.3E-07 40.1 2.6 29 213-241 11-39 (46)
239 2crc_A Ubiquitin conjugating e 95.9 0.0069 2.4E-07 40.4 3.5 29 214-242 9-37 (52)
240 3gj3_B Nuclear pore complex pr 95.8 0.0035 1.2E-07 37.8 1.5 29 145-175 4-32 (33)
241 2kn4_A Immunoglobulin G-bindin 95.5 0.01 3.5E-07 47.7 4.0 35 43-79 3-37 (158)
242 3b08_B Ranbp-type and C3HC4-ty 95.4 0.0095 3.3E-07 41.4 2.8 29 214-242 7-35 (64)
243 3pq1_A Poly(A) RNA polymerase; 95.2 0.012 4E-07 56.4 3.8 54 6-73 54-107 (464)
244 2d9g_A YY1-associated factor 2 94.4 0.028 9.7E-07 37.5 3.0 31 145-177 8-38 (53)
245 2i2y_A Fusion protein consists 93.9 0.02 6.7E-07 45.7 1.8 41 52-93 10-51 (150)
246 2ebv_A Nuclear pore complex pr 92.8 0.081 2.8E-06 35.8 3.1 30 144-175 27-56 (57)
247 1nj3_A NPL4; NZF domain, rubre 91.7 0.08 2.7E-06 31.1 1.8 27 146-174 4-30 (31)
248 2c6a_A Ubiquitin-protein ligas 91.7 0.059 2E-06 34.6 1.2 28 146-175 11-38 (46)
249 3a9j_C Mitogen-activated prote 91.4 0.096 3.3E-06 31.4 1.9 28 146-175 6-33 (34)
250 2crc_A Ubiquitin conjugating e 91.1 0.24 8.1E-06 32.9 3.8 29 147-177 9-37 (52)
251 2cr8_A MDM4 protein; ZF-ranbp 90.7 0.36 1.2E-05 31.6 4.2 30 212-241 8-37 (53)
252 3b08_B Ranbp-type and C3HC4-ty 89.4 0.13 4.5E-06 35.6 1.4 29 147-177 7-35 (64)
253 1w7p_D VPS36P, YLR417W; ESCRT- 88.9 0.078 2.7E-06 51.9 0.0 84 145-241 114-206 (566)
254 3d45_A Poly(A)-specific ribonu 88.6 1 3.4E-05 43.5 7.6 55 5-76 440-494 (507)
255 3gj7_B Nuclear pore complex pr 88.1 0.18 6.1E-06 38.0 1.5 30 144-175 68-97 (98)
256 2cr8_A MDM4 protein; ZF-ranbp 80.1 1.4 4.6E-05 28.9 2.8 29 145-175 8-36 (53)
257 3j21_g 50S ribosomal protein L 79.0 1.3 4.4E-05 29.2 2.5 25 214-238 13-37 (51)
258 6rxn_A Rubredoxin; electron tr 76.8 0.84 2.9E-05 29.4 1.1 12 213-224 28-39 (46)
259 2g0c_A ATP-dependent RNA helic 75.8 7.9 0.00027 26.7 6.2 73 7-91 2-75 (76)
260 4rxn_A Rubredoxin; electron tr 75.3 0.96 3.3E-05 30.1 1.1 12 213-224 34-45 (54)
261 3pwf_A Rubrerythrin; non heme 71.4 2.1 7.3E-05 35.1 2.5 28 213-240 136-164 (170)
262 2j9u_B VPS36, vacuolar protein 70.4 3 0.0001 29.6 2.7 29 212-240 14-51 (76)
263 1e8j_A Rubredoxin; iron-sulfur 69.5 1.5 5.2E-05 28.8 1.0 13 212-224 33-45 (52)
264 1yk4_A Rubredoxin, RD; electro 69.5 1.6 5.4E-05 28.8 1.1 13 212-224 32-44 (52)
265 2v3b_B Rubredoxin 2, rubredoxi 69.0 1.6 5.4E-05 29.1 1.0 13 212-224 33-45 (55)
266 2ayj_A 50S ribosomal protein L 67.5 3 0.0001 27.9 2.1 24 214-237 18-41 (56)
267 1dx8_A Rubredoxin; electron tr 67.1 1.9 6.3E-05 30.3 1.1 14 212-225 37-50 (70)
268 2kn9_A Rubredoxin; metalloprot 64.9 2.1 7.1E-05 30.9 1.0 13 212-224 57-69 (81)
269 1lko_A Rubrerythrin all-iron(I 64.4 3.3 0.00011 34.5 2.3 26 215-240 155-182 (191)
270 2k4x_A 30S ribosomal protein S 63.0 2.3 7.9E-05 28.3 0.9 27 212-238 15-45 (55)
271 1yuz_A Nigerythrin; rubrythrin 61.3 4.4 0.00015 34.1 2.5 27 214-240 170-197 (202)
272 1s24_A Rubredoxin 2; electron 60.2 2.8 9.7E-05 30.6 1.0 13 212-224 65-77 (87)
273 2pk2_A Cyclin-T1, protein TAT; 59.0 2 6.8E-05 39.5 0.0 17 139-157 305-321 (358)
274 3j20_Y 30S ribosomal protein S 50.0 7.4 0.00025 25.2 1.7 26 212-237 16-45 (50)
275 1dl6_A Transcription factor II 49.6 13 0.00044 24.8 2.9 14 212-225 27-40 (58)
276 2pk2_A Cyclin-T1, protein TAT; 48.0 3.8 0.00013 37.5 0.0 12 211-222 310-321 (358)
277 3p2a_A Thioredoxin 2, putative 46.6 15 0.00051 27.9 3.3 26 216-241 6-37 (148)
278 4b2u_A S67; toxin, ICK; NMR {S 46.1 5.8 0.0002 23.1 0.6 12 143-156 13-24 (36)
279 2ppt_A Thioredoxin-2; thiredox 42.6 25 0.00086 27.3 4.1 41 215-266 14-60 (155)
280 4e8u_A Putative uncharacterize 41.5 51 0.0017 27.0 5.8 56 7-73 14-81 (172)
281 2co8_A NEDD9 interacting prote 38.0 38 0.0013 23.5 4.1 25 146-172 13-47 (82)
282 3nyb_B Protein AIR2; polya RNA 34.7 16 0.00055 26.2 1.6 29 213-241 22-58 (83)
283 2kdx_A HYPA, hydrogenase/ureas 34.2 25 0.00085 26.6 2.7 30 212-241 70-102 (119)
284 1xwh_A Autoimmune regulator; P 33.9 26 0.0009 23.6 2.5 25 145-173 5-29 (66)
285 3irb_A Uncharacterized protein 33.0 18 0.00061 28.6 1.8 25 217-241 49-73 (145)
286 4b2v_A S64; toxin, ICK; NMR {S 33.0 13 0.00045 21.0 0.6 13 210-222 13-25 (32)
287 3a43_A HYPD, hydrogenase nicke 31.3 31 0.0011 27.0 2.9 29 213-241 68-119 (139)
288 1ydm_A Hypothetical protein YQ 29.4 15 0.00052 30.1 0.8 16 245-260 129-144 (187)
289 2gnr_A Conserved hypothetical 29.1 23 0.00078 28.1 1.8 23 217-239 49-71 (145)
290 2apo_B Ribosome biogenesis pro 28.2 33 0.0011 23.1 2.2 24 216-241 7-30 (60)
291 1mm2_A MI2-beta; PHD, zinc fin 27.0 1.3E+02 0.0046 19.6 5.5 24 146-173 7-30 (61)
292 1qxf_A GR2, 30S ribosomal prot 25.8 26 0.00089 24.1 1.3 26 215-240 7-37 (66)
293 4gne_A Histone-lysine N-methyl 24.9 21 0.00071 26.9 0.7 24 213-236 51-76 (107)
294 1sou_A 5,10-methenyltetrahydro 24.7 16 0.00055 30.2 0.1 15 245-259 125-139 (194)
295 1f62_A Transcription factor WS 23.4 37 0.0013 21.3 1.7 11 213-223 39-49 (51)
296 2ysm_A Myeloid/lymphoid or mix 23.2 52 0.0018 24.3 2.8 12 211-222 44-55 (111)
297 2gmg_A Hypothetical protein PF 22.6 43 0.0015 25.1 2.1 30 211-241 63-96 (105)
298 2yql_A PHD finger protein 21A; 22.5 63 0.0022 20.8 2.7 25 145-173 6-30 (56)
299 2yrc_A Protein transport prote 21.8 37 0.0013 22.6 1.4 14 214-227 32-45 (59)
300 3hy3_A 5-formyltetrahydrofolat 21.7 14 0.00046 30.8 -1.0 16 245-260 142-157 (203)
301 1fp0_A KAP-1 corepressor; PHD 21.4 50 0.0017 23.9 2.2 26 144-173 21-46 (88)
302 3u5c_f 40S ribosomal protein S 20.7 40 0.0014 26.8 1.7 26 148-173 118-147 (152)
303 2hgo_A CASSIICOLIN; toxin, dis 20.7 34 0.0012 18.7 0.8 8 214-221 20-27 (27)
304 2aus_D NOP10, ribosome biogene 20.0 59 0.002 21.8 2.1 23 217-241 7-29 (60)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=145.62 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=78.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.++|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+.||+..|.|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
++|+|++|+|
T Consensus 89 r~l~V~~AkP 98 (99)
T 4fxv_A 89 KTIKVSYARP 98 (99)
T ss_dssp EECEEEECCB
T ss_pred EEEEEEEeeC
Confidence 9999999975
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=144.13 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=76.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccC-CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceecC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN-NKDFHG 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G-~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln-g~~l~G 82 (284)
+++|||+|||+++|+++|+++|++|| .|.. |+|++++.|++++|||||+|.++++|++||+.++ +..|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 57999999999999999999999999 7877 7799999999999999999999999999999774 567999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|.|++|.++++
T Consensus 73 r~i~V~~a~~~~~ 85 (91)
T 2lxi_A 73 QKVSMHYSDPKPK 85 (91)
T ss_dssp EEEEEECCCSCCC
T ss_pred EEEEEEEcCCCCC
Confidence 9999999988765
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=7.2e-20 Score=151.40 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=80.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+.++.|+.+++||||+|.++++|++||+.|++..|.+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++|++...
T Consensus 109 ~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 109 RIIRTDWDAGFKE 121 (156)
T ss_dssp EECEEEEESCCCT
T ss_pred eEEEEEECCCCCC
Confidence 9999999987654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=142.90 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.++..+|||+|||+++++++|+++|++||.|.. |+|++|+.|++++|||||+|.+.++|++||+.||+..|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357889999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|+|++|....
T Consensus 75 gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 75 GNIIHAQLDIKGQ 87 (110)
T ss_dssp TEECEEEECSTTH
T ss_pred CeEEEEEECCCCc
Confidence 9999999997543
No 5
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=140.97 Aligned_cols=93 Identities=45% Similarity=0.751 Sum_probs=86.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.....++.|.|+|+.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 35789999999999999999999999999997666777779999999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999997765
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=135.57 Aligned_cols=86 Identities=27% Similarity=0.378 Sum_probs=81.4
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+++++|||+|||.++++++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.||+..|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|+|+++.++..
T Consensus 74 g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 74 GRPMRVGHVTERLD 87 (95)
T ss_dssp SSCCEEEESSCCCC
T ss_pred CcEEEEEEcccccC
Confidence 99999999987755
No 7
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=138.39 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=82.6
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|..++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.++++|++||+.||+..|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCCC
Q 023286 81 HGNLIGVFIAESRGKD 96 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~~ 96 (284)
.+++|+|++++++...
T Consensus 80 ~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 80 DGRQIRVDQAGKSSDN 95 (102)
T ss_dssp TSCCCEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCCC
Confidence 9999999999987653
No 8
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=136.16 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=81.1
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V-~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+++++|||+|||.++|+++|+++|++||.|.. | +|+.++.++.++|||||+|.++++|++||+.|++..|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 357899999999999999999999999999987 6 8999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|+.|+|+++.++..
T Consensus 74 ~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 74 CNRPITVSYAFKKDS 88 (96)
T ss_dssp TTEECEEEESCCCCC
T ss_pred CCEEEEEEEecccCC
Confidence 999999999987765
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=138.59 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=82.9
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|..+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567889999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecccCCCCC
Q 023286 81 HGNLIGVFIAESRGKDD 97 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~~~ 97 (284)
.++.|+|.+++++....
T Consensus 80 ~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 80 FGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp TTEEEEEEECCCCCCCC
T ss_pred CCcEEEEEeCCCCCCCC
Confidence 99999999999876543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=135.78 Aligned_cols=87 Identities=25% Similarity=0.353 Sum_probs=81.5
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356789999999999999999999999999988 889999989999999999999999999999999999999
Q ss_pred CceEEEEecccCCCC
Q 023286 82 GNLIGVFIAESRGKD 96 (284)
Q Consensus 82 Gr~i~V~~a~~~~~~ 96 (284)
++.|.|+++.++...
T Consensus 77 g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 77 GRMLHVLPSTIKKEA 91 (99)
T ss_dssp SCEEEEEECCCCSTT
T ss_pred CcEEEEEEcCCCccc
Confidence 999999999987653
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=7.3e-20 Score=140.15 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=74.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eec
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK----DFH 81 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~----~l~ 81 (284)
.||||+|||+++|+++|+++|++||.+.... |+|++|+.|+++||||||+|.++++|++||+.||+. .|+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNN------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGG------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEE------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 6899999999999999999999999765433 899999999999999999999999999999999986 589
Q ss_pred CceEEEEeccc
Q 023286 82 GNLIGVFIAES 92 (284)
Q Consensus 82 Gr~i~V~~a~~ 92 (284)
|++|.|++|+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=133.02 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=76.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccC
Q 023286 83 NLIGVFIAESR 93 (284)
Q Consensus 83 r~i~V~~a~~~ 93 (284)
+.|+|++++++
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99999999875
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=9.7e-19 Score=137.16 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|.+||.|.. |+|+.++.++.++|||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|.+++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999877654
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=3.2e-19 Score=132.16 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.8
Q ss_pred CCCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 1 MTMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
|..++++|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578899999999999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCceEEEEecc
Q 023286 81 HGNLIGVFIAE 91 (284)
Q Consensus 81 ~Gr~i~V~~a~ 91 (284)
.|++|+|++|+
T Consensus 75 ~g~~l~v~~ak 85 (85)
T 3mdf_A 75 FGRTIRVNLAK 85 (85)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEcC
Confidence 99999999985
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.7e-19 Score=130.66 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=78.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+.+|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 468999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|+|+++++++
T Consensus 73 l~v~~a~~~~ 82 (83)
T 3md1_A 73 LRINWAAKLE 82 (83)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCcCC
Confidence 9999998764
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=134.60 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+ |++..|.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999988 8899999999999999999999999999998 99999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|.++.++...
T Consensus 79 ~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 79 KKVEVKRAEPRDSK 92 (99)
T ss_dssp CBCEEEECCCCCCC
T ss_pred eEEEEEECCCCccc
Confidence 99999999977653
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=136.47 Aligned_cols=86 Identities=26% Similarity=0.355 Sum_probs=81.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|++++++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 85 LILNVEWAKPSTNS 98 (103)
T ss_dssp EECEEEESSCCCCS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999887653
No 18
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9e-19 Score=137.68 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=78.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.++|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+.|++ .|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 45789999999999999999999999999988 88999999999999999999999999999999998 8999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|+++.+...
T Consensus 86 ~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 86 RKANVNLAYLGAK 98 (116)
T ss_dssp EECEEEESTTTCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999986544
No 19
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=5.2e-20 Score=162.39 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccC--CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G--~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..++|||+|||+++|+++|+++|++|| .|.. |+|++++.|+++||||||+|.+.++|++||+.||++.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 456899999999999999999999999 8887 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccC
Q 023286 82 GNLIGVFIAESR 93 (284)
Q Consensus 82 Gr~i~V~~a~~~ 93 (284)
++.|+|.+|+++
T Consensus 139 Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 139 GQNPVVTPVNKQ 150 (229)
T ss_dssp TBCCEEEECCHH
T ss_pred CEEeEEEECCCC
Confidence 999999998754
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=6.4e-19 Score=138.33 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=80.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.||+..|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
++|+|++++++...
T Consensus 95 ~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 95 KRLKVQLKRSKNDS 108 (115)
T ss_dssp EECEEECCCCSCCC
T ss_pred EEEEEEEcCCCCcC
Confidence 99999999987653
No 21
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=3.4e-19 Score=141.95 Aligned_cols=86 Identities=28% Similarity=0.354 Sum_probs=80.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.||+..|.|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45679999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|.|+++.++...
T Consensus 92 ~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 92 QPISVDWCFVRGPP 105 (126)
T ss_dssp SBCEEEESEESSSC
T ss_pred eEEEEEEecCCCCC
Confidence 99999999877553
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=134.38 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=80.3
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT---TNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~---tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
..++++|||+|||.++|+++|+++|++||.|.. |+|+.++. |+.+++||||+|.+.++|++||+.|++.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 357889999999999999999999999999988 88888876 6799999999999999999999999999
Q ss_pred eecCceEEEEecccCCCC
Q 023286 79 DFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~~~ 96 (284)
.|.|+.|.|++++++...
T Consensus 74 ~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 74 TVDGHKLEVRISERATKP 91 (98)
T ss_dssp EETTEECEEECSSCSSCC
T ss_pred eeCCeEEEEEEccCCCCC
Confidence 999999999999877653
No 23
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=135.02 Aligned_cols=89 Identities=40% Similarity=0.777 Sum_probs=82.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|..+..++.|.|+|+.++.|++++|||||+|.+.++|++||+.|++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999987655666778899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=136.09 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=80.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |.|+.++.|++++|||||+|.+.++|++||+.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|+++++...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 9999999987654
No 25
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=8.3e-19 Score=133.35 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
|+++|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|+++.++..
T Consensus 73 ~l~V~~a~~~~~ 84 (96)
T 2x1f_A 73 FLKCGYSSNSDI 84 (96)
T ss_dssp ECEEEECSCSSG
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=134.90 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|.++.++...
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999999887653
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=132.87 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=79.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++..|.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|.+++++..
T Consensus 86 ~~l~v~~a~~~~~ 98 (100)
T 2do4_A 86 NIIKVAISNSGPS 98 (100)
T ss_dssp CEEEEEECCCCSC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=134.85 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=80.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN------ 76 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln------ 76 (284)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|++++.|+.++|||||+|.+.++|++||+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999
Q ss_pred CceecCceEEEEecccCCCC
Q 023286 77 NKDFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 77 g~~l~Gr~i~V~~a~~~~~~ 96 (284)
+..|.|+.|+|.++.++...
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CEESSSCEEEEECCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccC
Confidence 99999999999999877553
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=134.27 Aligned_cols=85 Identities=28% Similarity=0.361 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+.|++..|.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 35678999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|+++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (106)
T 1p27_B 93 QPISVDWCFVRGP 105 (106)
T ss_dssp SBCEEEESEESSC
T ss_pred cEEEEEeecCCCC
Confidence 9999999987653
No 30
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=2.6e-19 Score=134.83 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=71.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccC--CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G--~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+|||+|||.++|+++|+++|++|| .|.. |+|+.++.|++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 4799999999999999999999999 7776 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|.++.+...
T Consensus 74 ~i~V~~~~~~~~ 85 (90)
T 3p5t_L 74 NPVVTPSNKLEH 85 (90)
T ss_dssp CCEECCC-----
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=131.62 Aligned_cols=82 Identities=28% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45679999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
++|+|+++++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999874
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=136.15 Aligned_cols=85 Identities=32% Similarity=0.467 Sum_probs=79.5
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..++.+|||+|||.++|+++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456789999999999999999999999999988 8899998 8999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|+|++++++..
T Consensus 75 g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 75 GKAIKVEQAKKPSF 88 (116)
T ss_dssp SSBCEEEECCCSSC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987654
No 33
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=131.84 Aligned_cols=81 Identities=32% Similarity=0.428 Sum_probs=77.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++.++|||+|||.++++++|+++|++||.|.. |+|+.++.++++++||||+|.++++|++||+.|++..|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 56789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
++|+|++|+
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 34
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=138.92 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=79.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+.++|||+|||.++|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|++++++..
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987755
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.2e-18 Score=134.64 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=80.3
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF- 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l- 80 (284)
..+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.|++..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 346789999999999999999999999999988 88999999999999999999999999999999999987
Q ss_pred --cCceEEEEecccCCC
Q 023286 81 --HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 --~Gr~i~V~~a~~~~~ 95 (284)
.++.|.|.++.++..
T Consensus 82 ~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 82 PGMNRPIQVKPADSESR 98 (106)
T ss_dssp TTCSSCCEEEECCCCSC
T ss_pred CCCCceEEEEECCcccc
Confidence 889999999987655
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=133.80 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=80.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCcee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRD-KTTNEYKGDATVTYEDPHAALAAVEWF-NNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~d-k~tg~~rGfaFV~F~s~e~A~~Ai~~l-ng~~l 80 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |+|+.+ +.+++++|||||+|.+.++|++||+.| ++..|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 45689999999999999999999999999988 889988 789999999999999999999999999 99999
Q ss_pred cCceEEEEecccCCCC
Q 023286 81 HGNLIGVFIAESRGKD 96 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~~ 96 (284)
.|+.|+|++++++...
T Consensus 85 ~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 85 YGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSCBCEEEECCCCCCC
T ss_pred CCCEEEEEeCCCCCCC
Confidence 9999999999987653
No 37
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=132.75 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=77.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++|+ |.. |+|++++.|++++|||||+|.+.++|++|| .|++..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 4568999999999999999999999997 777 889999999999999999999999999999 899999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|+++.++..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 9999999987655
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.60 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=79.6
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCee-ecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLK-KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~-~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
..++.+|||+|||.++++++|+++|++||.|. . |+|++++.|++++|||||+|.+.++|++||+.||+..|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 35678999999999999999999999999998 7 88999999999999999999999999999999999999
Q ss_pred cCce----EEEEecccCC
Q 023286 81 HGNL----IGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~----i~V~~a~~~~ 94 (284)
.++. |+|++|++..
T Consensus 78 ~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 78 PGATPAKRFKLNYATYSG 95 (99)
T ss_dssp SSCSSCEECCEEETTCCS
T ss_pred CCCCcceeEEEeecCCCC
Confidence 9999 9999998654
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.4e-18 Score=132.61 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45789999999999999999999999999988 8899988 79999999999999999999999999999998
Q ss_pred ---ceEEEEecccCCCC
Q 023286 83 ---NLIGVFIAESRGKD 96 (284)
Q Consensus 83 ---r~i~V~~a~~~~~~ 96 (284)
+.|.|.+++++...
T Consensus 84 g~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 84 GASSSLVVKFADTDKES 100 (105)
T ss_dssp TCSSCCEEEESCSSCCC
T ss_pred CCCccEEEEECccCccc
Confidence 99999999987653
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=132.50 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|.+||.|.. |+|+.++ ++++++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999988 8899988 59999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|++++....
T Consensus 84 ~~l~v~~a~~~~~ 96 (114)
T 2do0_A 84 RPMHVKMDERALP 96 (114)
T ss_dssp EECEEEECSCCCC
T ss_pred CEEEEEEcccCCC
Confidence 9999999986544
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.9e-18 Score=134.40 Aligned_cols=85 Identities=31% Similarity=0.363 Sum_probs=80.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||..|++..|.|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 96 ~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 96 QTIQVDWCFVKGP 108 (110)
T ss_dssp EECEEEESEESSC
T ss_pred cEEEEEEcccCCC
Confidence 9999999987654
No 42
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=128.96 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=78.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE-YKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~-~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.++++|||+|||.++|+++|+++|++||.|.. |.|+.++.++. ++|||||+|.+.++|++||+.||+..|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 46789999999999999999999999999988 88999887766 9999999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|+|+++.+..
T Consensus 74 g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 74 GQEITATAVLAPW 86 (88)
T ss_dssp TEECEEEEECCCC
T ss_pred CeEEEEEECCCCC
Confidence 9999999997654
No 43
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.8e-19 Score=136.76 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCcEEEeccCCC------CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 4 ANGSVYVCNLPH------GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 4 ~~~tIyV~nLp~------~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
.+++|||+|||. ++++++|+++|++||.|.. |+|++++.|++++|||||+|.+.++|++||+.||+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 9999999999999999998 88999999999999999999999999999999999
Q ss_pred ceecC-ceEEEEecccCC
Q 023286 78 KDFHG-NLIGVFIAESRG 94 (284)
Q Consensus 78 ~~l~G-r~i~V~~a~~~~ 94 (284)
..|.| +.|+|.++.++.
T Consensus 77 ~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp CBSSSSCBCEEEESHHHH
T ss_pred cccCCCeEEEEEECchhh
Confidence 99999 999999998653
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=2.4e-18 Score=135.53 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+++|||+|||+++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|++||+.|++..|.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4678999999999999999999999999998 8899886 45899999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.++.++..
T Consensus 74 ~i~V~~a~~~~~ 85 (115)
T 4f25_A 74 KVFVGRFKSRKE 85 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEECCCccc
Confidence 999999987654
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=132.98 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t-g~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+..+|||+|||.++|+++|+++|++|| |.. |+|+.++.| ++++|||||+|.+.++|++|| .|++..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4568999999999999999999999999 887 889999988 999999999999999999999 89999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
++.|.|+++.++..
T Consensus 83 g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 83 NKRIRVDVADQAQD 96 (104)
T ss_dssp TEECEEEECCCCCC
T ss_pred CcEEEEEEccCCCC
Confidence 99999999988765
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=132.57 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=79.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhc-cCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-e
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGT-IGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-F 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~-~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~-l 80 (284)
.++.+|||+|||.++|+++|+++|++ ||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++.. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc
Confidence 46789999999999999999999999 999988 8899998 89999999999999999999999999999 9
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|+.|.|+++.++..
T Consensus 78 ~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 78 GSKPVRLSVAIPKAS 92 (104)
T ss_dssp SSSCCCCCBCCCCCS
T ss_pred CCEeEEEEEccCCCc
Confidence 999999999987654
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=132.19 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=78.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.++|||+|||.++|+++|+++|++||.|.. |.|+.+ ++.+++||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999988 778887 79999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|.|++++++...
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 83 KPLYVALAQRKEER 96 (103)
T ss_dssp SBCEEEECSSCCCC
T ss_pred cEEEEEEecccccC
Confidence 99999999987653
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=134.13 Aligned_cols=84 Identities=27% Similarity=0.352 Sum_probs=79.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+++.+|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.|++..|.|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|+|++++++.
T Consensus 96 ~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 RPMKVGHVTERT 107 (108)
T ss_dssp SCCEEECSCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999998764
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=132.41 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=79.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+. ++..|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 46789999999999999999999999999998 88999999999999999999999999999998 9999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|+++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987765
No 50
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=1.6e-18 Score=131.11 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=75.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+++.+|||+|||.++|+++|+++|.+||.|.. +.++.++.+++++|||||+|.++++|++||+.||+..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35689999999999999999999999999987 5688888999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
+.|+|+++.+
T Consensus 85 r~l~v~~a~s 94 (95)
T 2ek1_A 85 RKVKLSGPSS 94 (95)
T ss_dssp EECEEECCC-
T ss_pred cEEEEEeccC
Confidence 9999999863
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=130.95 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=76.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
....+|||+|||.++++++|+++|.+||.|.. +.++.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 34578999999999999999999999999986 5588888899999999999999999999999999999999
Q ss_pred ceEEEEecccC
Q 023286 83 NLIGVFIAESR 93 (284)
Q Consensus 83 r~i~V~~a~~~ 93 (284)
+.|+|+++..+
T Consensus 85 ~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 RKVKLVLGSGP 95 (98)
T ss_dssp EECEEEESSCS
T ss_pred eEEEEEEcCCC
Confidence 99999998754
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.1e-18 Score=126.65 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=77.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++|| .|++..|.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 4679999999999999999999999999998 889999999999999999999999999999 8999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
.|+|.++++..
T Consensus 76 ~l~V~~a~~~~ 86 (89)
T 3ucg_A 76 QIKVIPKRTNR 86 (89)
T ss_dssp ECEEEETTTTS
T ss_pred EEEEEEccCCC
Confidence 99999998653
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=128.80 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=76.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.+ +++||||+|.++++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 45789999999999999999999999999998 888888643 68999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|++++++...
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 83 KEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEEEEECCCTTCC
T ss_pred CeEEEEECCCCccc
Confidence 99999999976553
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=5.6e-18 Score=130.99 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=76.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|.+||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++..|.|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 97 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDG 97 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45789999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
+.|+|++|.
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999985
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=128.50 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=77.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+.++. .+++||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999988 88888864 389999999999999999999999999999
Q ss_pred ceEEEEecccCCCCC
Q 023286 83 NLIGVFIAESRGKDD 97 (284)
Q Consensus 83 r~i~V~~a~~~~~~~ 97 (284)
+.|+|+++.++....
T Consensus 83 ~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 83 RKIEVNNATARVMTN 97 (103)
T ss_dssp EECEEEECCSSCCCC
T ss_pred EEEEEEEcccCCCCC
Confidence 999999999876543
No 56
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=127.90 Aligned_cols=81 Identities=28% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++. ++++|||||+|.++++|++||+.|++..|.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999999999999999999999999998 88999886 9999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
+.|+|++++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999999863
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=2.6e-18 Score=138.40 Aligned_cols=85 Identities=26% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|+|+++.++..
T Consensus 116 ~~l~V~~a~~~~p 128 (129)
T 2kxn_B 116 RRIRVDFSITKRP 128 (129)
T ss_dssp SCCEESCCSSSSC
T ss_pred EEEEEEEecCCCC
Confidence 9999999987653
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=128.31 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=75.8
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~----~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
++..+|||+|||.++++++|+ ++|++||.|.. |+|+.++.+ ++||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 356799999999999999999 99999999998 889998876 889999999999999999999999
Q ss_pred eecCceEEEEecccCCC
Q 023286 79 DFHGNLIGVFIAESRGK 95 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~~ 95 (284)
.|.|++|+|++|+++..
T Consensus 76 ~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 76 KIGSKKILVSLATGASG 92 (96)
T ss_dssp EETTEEEEEEECCCSSC
T ss_pred EECCeEEEEEEcCCCCC
Confidence 99999999999987654
No 59
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=9.2e-18 Score=124.99 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+ +++..|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 46789999999999999999999999999998 8899999999999999999999999999997 58889999
Q ss_pred ceEEEEec
Q 023286 83 NLIGVFIA 90 (284)
Q Consensus 83 r~i~V~~a 90 (284)
+.|.|++|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999876
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=8.2e-18 Score=126.43 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=77.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.++..+|||+|||.++++++|+++|++||.|.. |+|++ +++++++||||+|.+.++|++||+.|++..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356789999999999999999999999999988 77776 37899999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|+|+++++...
T Consensus 75 g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 75 GREIDVRIDRNASG 88 (92)
T ss_dssp TBCCCCEECSCCSS
T ss_pred CcEEEEEEcCCCCC
Confidence 99999999987654
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=127.49 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=77.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|.+||.|.. |+|+.++.|++++|||||+|.+.++|++||. +++.|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g 82 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG 82 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC
Confidence 45678999999999999999999999999998 8899999999999999999999999999998 4788999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|.|.++.++...
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 83 RWCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEEecCCCCcC
Confidence 99999999987653
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=141.14 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccC--CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG--LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G--~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+..+|||+|||+++|+++|+++|++|| .|.. |+|+.|+.|++++|||||+|.+.++|++||+.||+..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 357999999999999999999999999 7877 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccC
Q 023286 82 GNLIGVFIAESR 93 (284)
Q Consensus 82 Gr~i~V~~a~~~ 93 (284)
|+.|.|.++.++
T Consensus 126 Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 126 GEKVDVRPATRQ 137 (156)
T ss_dssp TEECEEEECCHH
T ss_pred CeEeEEEEcCCC
Confidence 999999999764
No 63
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.5e-18 Score=134.56 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=76.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.||+..|.|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
++|+|++++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999874
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=9.2e-18 Score=140.23 Aligned_cols=86 Identities=30% Similarity=0.361 Sum_probs=79.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+.++.|+.++|||||+|.+.++|++||+.||+..|.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34568999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|.|.++.++...
T Consensus 142 ~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 142 QTIQVDWCFVKGPK 155 (165)
T ss_dssp EECEEEESEECC--
T ss_pred EEEEEEEecCCCCC
Confidence 99999999877653
No 65
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2e-17 Score=127.40 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=71.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++++|||+|||.++|+++|+++|++||.|.. |.|+ ++||||+|.+.++|++||+.|++..|.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 45789999999999999999999999999987 6665 4599999999999999999999999999
Q ss_pred ceEEEEecccCCCCC
Q 023286 83 NLIGVFIAESRGKDD 97 (284)
Q Consensus 83 r~i~V~~a~~~~~~~ 97 (284)
+.|.|++++++....
T Consensus 73 ~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 73 ENIEIVFAKPPDQKR 87 (103)
T ss_dssp EEEEEEECCCCCCCC
T ss_pred CEEEEEEcCCCcccc
Confidence 999999998876543
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=125.00 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++| .|.. |+|+++ .+++++|||||+|.+.++|++||+ |++..|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 356899999999999999999999999 7877 889998 789999999999999999999999 99999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 77 r~i~v~~a~~~~~ 89 (91)
T 2dgw_A 77 RYIEVFREKSGPS 89 (91)
T ss_dssp EEEEEEEESSCCC
T ss_pred cEEEEEECCcCCC
Confidence 9999999987754
No 67
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=8.2e-18 Score=131.32 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=76.4
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.++ ..|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~ 92 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD 92 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCC
Confidence 345789999999999999999999999999998 8899999999999999999999999999999764 8999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|.|.++.++..
T Consensus 93 g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 93 SKTIDPKVAFPRRA 106 (109)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CEEEEEEEccCCCC
Confidence 99999999987654
No 68
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=138.06 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK---- 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~---- 78 (284)
.++.+|||+|||+++|+++|+++|.+||.|...+ |+|++|+.|++++|||||+|.+. +|++||+.||+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSN------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 3568999999999999999999999999996543 78999999999999999999999 999999999999
Q ss_pred eecCceEEEEecccCCC
Q 023286 79 DFHGNLIGVFIAESRGK 95 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~~ 95 (284)
.|.|+.|.|++++++.+
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 99999999999987654
No 69
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=129.67 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=79.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCC-eeecCCCCCCcEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--C
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLY-RDKTTNEYKGDATVTYEDPHAALAAVEWFN--N 77 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~-v~~~~~tg~p~V~i~-~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln--g 77 (284)
..++++|||+|||.++|+++|+++|.+||. |.. |.|+ .++.|+.++|||||+|.+.++|++||+.|+ +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~ 76 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR 76 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC
Confidence 356789999999999999999999999998 887 7787 888899999999999999999999999996 5
Q ss_pred ceecCceEEEEecccCCCC
Q 023286 78 KDFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 78 ~~l~Gr~i~V~~a~~~~~~ 96 (284)
..|.|+.|+|++|+++...
T Consensus 77 ~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 77 IQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SCBTTBCCEEEESCSSCST
T ss_pred ceecCCeEEEEEcCCCCCc
Confidence 8999999999999977653
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=131.47 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=77.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|+++|.+||.|.. |+|+.++.|++++|||||+|.+.++|++||+. ++..|.|+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 478999999999999999999999999988 88999999999999999999999999999997 999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|.++.++..
T Consensus 98 l~V~~a~~~~~ 108 (116)
T 1x4b_A 98 VEPKRAVAREE 108 (116)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEECCCCcc
Confidence 99999998765
No 71
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=129.74 Aligned_cols=84 Identities=30% Similarity=0.437 Sum_probs=79.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+.++|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.|++..|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 3579999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|+++.++..
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999987654
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-18 Score=128.86 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=76.0
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+++.+|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.||+..|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 467899999999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred CceEEEEecc
Q 023286 82 GNLIGVFIAE 91 (284)
Q Consensus 82 Gr~i~V~~a~ 91 (284)
++.|+|.++.
T Consensus 74 g~~~~~~~~~ 83 (85)
T 1x4e_A 74 AQMAKQSGPS 83 (85)
T ss_dssp EESCCSSCCC
T ss_pred eEEEeecCCC
Confidence 9888776543
No 73
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-19 Score=141.43 Aligned_cols=94 Identities=39% Similarity=0.757 Sum_probs=86.4
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..++.+|||+|||.++++++|+++|++||.|..+..++.|.|+|+.++.+++++|||||+|.+.++|++||+.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 46788999999999999999999999999998765566677889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987754
No 74
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-18 Score=135.06 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCe-eecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL-KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v-~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.+..+|||+|||+++|+++|+++|++||.| .. |+|+.++ +++++|||||+|.+.++|++||+. ++..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 456899999999999999999999999998 55 8899998 899999999999999999999986 999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
++.|.|.++.++.
T Consensus 83 gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 83 GREAFVHVVTLED 95 (114)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999998765
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=131.24 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=77.5
Q ss_pred CCCcEEEeccCCCCCCHHHHH---HHHhccCCeeecCCCCCCcEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhC
Q 023286 3 MANGSVYVCNLPHGTDEDMLA---EYFGTIGLLKKDKRTGRPKVWLYRDKTTN---EYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~---~~F~~~G~v~~~~~tg~p~V~i~~dk~tg---~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
.+..+|||+|||+++++++|+ ++|++||.|.. |.|+.++.++ .++|||||+|.+.++|++||+.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 356899999999999999999 99999999998 8888888754 566999999999999999999999
Q ss_pred CceecCceEEEEecccCCC
Q 023286 77 NKDFHGNLIGVFIAESRGK 95 (284)
Q Consensus 77 g~~l~Gr~i~V~~a~~~~~ 95 (284)
+..|.|++|+|++|.++..
T Consensus 85 g~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TEEETTEEEEEESCCCCSC
T ss_pred CCEECCEEEEEEecccccc
Confidence 9999999999999998764
No 76
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=2.4e-17 Score=158.24 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=79.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||+.+|+++|+++|++||.|.. |.|+.++.|++++|||||+|.+.++|++||+.||++.|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.++.++..
T Consensus 173 ~i~V~~a~~~~~ 184 (437)
T 3pgw_S 173 RVLVDVERGRTV 184 (437)
T ss_pred EEEEEEeCCCCC
Confidence 999999997654
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-17 Score=127.38 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=74.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+.+ +.+++||||+|.+.++|++||+.||+..|.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999999999999999999987 667543 4589999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 89 ~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 89 YRLRVEFPRSGRG 101 (109)
T ss_dssp EECEEECCCCCCC
T ss_pred eEEEEEEcccCCC
Confidence 9999999987654
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.7e-17 Score=137.05 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=79.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4689999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.+++++..
T Consensus 141 ~l~v~~a~~~~~ 152 (158)
T 2kn4_A 141 ELRVQMARYGRP 152 (158)
T ss_dssp EEEEEEECCSSC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=130.51 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=75.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||+++|+++|+++|++||.|.. |.|++++. ++++|||||+|.++++|++||. +++..|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 45689999999999999999999999999998 88999987 9999999999999999999999 89999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
+.|.|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998764
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=129.44 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||+++|+++|+++|++||.+ . |+|++++ +++++|||||+|.++++|++||+ +++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQH 81 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 356799999999999999999999999955 5 8899998 89999999999999999999995 79999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|+|.++.+..
T Consensus 82 r~i~V~~~~~~~ 93 (102)
T 1wez_A 82 RYVELFLNSTAG 93 (102)
T ss_dssp SCCEEEEECCCC
T ss_pred cEEEEEECCCCC
Confidence 999999988654
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=131.65 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=77.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++++++|+++|++||.|.. |+|+.++.|++++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 368999999999999999999999999998 889999999999999999999999999999 89999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|.|.++.++..
T Consensus 96 l~V~~a~~~~~ 106 (114)
T 2cq4_A 96 IIVQASQAEKN 106 (114)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEecCCCcc
Confidence 99999987543
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=129.87 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ce
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KD 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng--~~ 79 (284)
.++..+|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|.+.++|++||+.|++ ..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356789999999999999999999999999998 778764 68999999999999999998864 78
Q ss_pred ecCceEEEEecccCCCCC
Q 023286 80 FHGNLIGVFIAESRGKDD 97 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~~~~ 97 (284)
|.|++|.|++|+++....
T Consensus 79 l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 79 LRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp ETTEECCBCCCSSSSCCC
T ss_pred ECCEEEEEEEcCCCCCCc
Confidence 999999999998876543
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.4e-18 Score=123.28 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=71.4
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
+|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.++++|++||+ +++..|.|++|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 5999999999999999999999999988 7799999899999999999999999999998 999999999999
Q ss_pred EEec
Q 023286 87 VFIA 90 (284)
Q Consensus 87 V~~a 90 (284)
|++|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=126.53 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=74.0
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
..++++|||+|||.++|+++|+++|++||.|. |+.+ .+++++|||||+|.++++|++||+.|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34678999999999999999999999999763 5555 57899999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
++.|+|++++++..
T Consensus 80 g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 80 GRAIRLELQGPRGS 93 (101)
T ss_dssp TEEEEEEECSSCCC
T ss_pred CeEEEEEEcCCCCC
Confidence 99999999987754
No 85
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=2.1e-17 Score=131.13 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=77.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 478999999999999999999999999998 889999999999999999999999999999 79999999999
Q ss_pred EEEEecccCCC
Q 023286 85 IGVFIAESRGK 95 (284)
Q Consensus 85 i~V~~a~~~~~ 95 (284)
|+|+++++...
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=127.08 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=75.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++|. . |.++.++.+++++|||||+|.++++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4678999999999999999999999773 2 6688898899999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 NKVTLDWAKPKGE 94 (102)
T ss_dssp EECEEEECCCCCS
T ss_pred eEEEEEEecCCCC
Confidence 9999999987654
No 87
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=3.4e-17 Score=130.21 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++++|||+|||.++++++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+.|++..|.|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34679999999999999999999999999988 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++|.+...
T Consensus 104 ~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 104 RPMDIQLVASQID 116 (124)
T ss_dssp CEEEEEEECCTTC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999987654
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=133.71 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.++++|++||+.|++..|.|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEec
Q 023286 83 NLIGVFIA 90 (284)
Q Consensus 83 r~i~V~~a 90 (284)
+.|+|++|
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999986
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.6e-17 Score=125.66 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG- 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G- 82 (284)
...+|||+|||.++|+++|+++|.+||.|.. |+|+.+ |||||+|.+.++|++||+.||++.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 4679999999999999999999999999988 777765 799999999999999999999999999
Q ss_pred ----ceEEEEecccCCC
Q 023286 83 ----NLIGVFIAESRGK 95 (284)
Q Consensus 83 ----r~i~V~~a~~~~~ 95 (284)
+.|+|++|+++..
T Consensus 79 ~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TSCEEEEEEEESSCCSC
T ss_pred cCcceEEEEEeCCCCCC
Confidence 9999999998654
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=122.74 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=72.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|||+|||.++++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||+.++ ..|.|+.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 47999999999999999999999999987 8899999999999999999999999999999999 99999999
Q ss_pred EEEec
Q 023286 86 GVFIA 90 (284)
Q Consensus 86 ~V~~a 90 (284)
.|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=5.1e-18 Score=130.25 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=74.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK-TTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk-~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
....+|||+|||.++++++|+++|++|| |.. |+|+.++ .+++++|||||+|.+.++|++|| .|++..|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 3568999999999999999999999999 887 8899988 68999999999999999999999 89999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|.|++++++.
T Consensus 87 g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 NRRIRVDVADQAQ 99 (100)
T ss_dssp TBCCCCEECCCSC
T ss_pred CeEEEEEeccCCC
Confidence 9999999998764
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-17 Score=121.39 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=71.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+ ++||||+|.+.++|++||+.|++..|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 56789999999999999999999999999988 6665 5799999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|+|++++++..
T Consensus 70 ~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 70 VNINVEASKNKSK 82 (90)
T ss_dssp CBCEEECSSCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987765
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-18 Score=131.25 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|.+||.|... .+..+..+++++|||||+|.+.++|++||+.|++..|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~--------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP--------PIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSS--------CCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccce--------EEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 356899999999999999999999999998652 122222278899999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|.|++++++...
T Consensus 95 ~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 95 KILVIEFGKNKKQR 108 (115)
T ss_dssp CBCEEEECCCCSCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999977653
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.4e-18 Score=127.55 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=73.6
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|||+|||.++++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.+ |++|+..||+..|.|+.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 58999999999999999999999999988 889999999999999999999999 999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|++|.+...
T Consensus 73 ~V~~a~~~~~ 82 (90)
T 2ki2_A 73 RVTEANPKKS 82 (90)
T ss_dssp SEEEC-----
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=126.68 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=75.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||+++|+++|+++|.+||.|... |.|+.+ .+++++|||||+|.++++|++||+. ++..|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~-------v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-------EECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccee-------EEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 356899999999999999999999999998752 667787 6899999999999999999999996 9999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999999986654
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=127.58 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=76.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF-- 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l-- 80 (284)
.+..+|||+|||.++|+++|+++|.+||.|.. |+|+.++ ++.++|||||+|.+.++|++||+.||+..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 35689999999999999999999999999998 8899998 899999999999999999999999999999
Q ss_pred ------cCceEEEEecccC
Q 023286 81 ------HGNLIGVFIAESR 93 (284)
Q Consensus 81 ------~Gr~i~V~~a~~~ 93 (284)
.+++|.|.++.++
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 5788999999854
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=126.92 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+.++ +.++|||||+|.+.++|++||+.|++..|.|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999987 8888886 4589999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|.|++++++.
T Consensus 97 ~~l~V~~a~~~~ 108 (109)
T 2err_A 97 RKIEVNNATARV 108 (109)
T ss_dssp EECEEEECCCSC
T ss_pred EEEEEEECCCCc
Confidence 999999998763
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=130.06 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCC---eeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~---v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
+..+|||+|||+++|+++|+++|++||. |.. |+|+.++. ++++|||||+|.+.++|++||+ +++..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 4678999999999999999999999998 665 88999987 9999999999999999999999 999999
Q ss_pred cCceEEEEecccCC
Q 023286 81 HGNLIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~ 94 (284)
.++.|+|.++..+.
T Consensus 86 ~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 86 GHRYIEVFKSHRTE 99 (118)
T ss_dssp TTEEEEEEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999987654
No 99
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=125.46 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=71.3
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD-- 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~-- 79 (284)
.+|+.+|||+|||.++|+++|+++|++||.|.. |.|++ .||||||+|.+.++|++||+.|++..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 367899999999999999999999999999988 66764 46899999999999999999999875
Q ss_pred ecCceEEEEecccCC
Q 023286 80 FHGNLIGVFIAESRG 94 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~ 94 (284)
|.|++|.|++|+++.
T Consensus 84 i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 84 IAGHPAFVNYSTSQK 98 (100)
T ss_dssp ETTEEEEEEECSCSC
T ss_pred eCCcEEEEEeccccc
Confidence 779999999998764
No 100
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.3e-17 Score=135.36 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=79.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+.++|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.|++..|.|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3568999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
+|+|++++++..
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=124.46 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=72.5
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCce
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF--NNKD 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l--ng~~ 79 (284)
..++.+|||+|||+++|+++|+++|++||.|.. |.|+++ ||||||+|.+.++|++||+.| ++..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356789999999999999999999999999987 767654 689999999999999999977 4678
Q ss_pred ecCceEEEEecccCCCCC
Q 023286 80 FHGNLIGVFIAESRGKDD 97 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~~~~ 97 (284)
|.|++|.|.+++++....
T Consensus 78 ~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 78 LRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp ETTEECEEEECSCSSCCC
T ss_pred ECCcEEEEEEcCcccCcC
Confidence 999999999999776543
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=123.42 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH- 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~- 81 (284)
.++++|||+|||.++|+++|+++|++||.|.. |.|+.+ ++||||+|.+.++|++||+.||+..|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 46789999999999999999999999999988 666643 689999999999999999999999999
Q ss_pred -CceEEEEecccCCC
Q 023286 82 -GNLIGVFIAESRGK 95 (284)
Q Consensus 82 -Gr~i~V~~a~~~~~ 95 (284)
++.|+|++++++..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 81 PDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 99999999987654
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-18 Score=129.54 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. . ++.++.+++++|||||+|.+.++|++||+ |++..|.|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~--------~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L--------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C--------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E--------EEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 5679999999999999999999999999875 2 55666778999999999999999999999 999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (101)
T 1fj7_A 86 EIKLEKPKGRDG 97 (101)
T ss_dssp CCEEECCSCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987654
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=126.09 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=73.5
Q ss_pred CcEEEeccCCCCC------CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 5 NGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~------te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
+++|||+|||..+ |+++|+++|++||.|.. |.|+ +.+++++|||||+|.+.++|++||..||+.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 5799999999999 78999999999999988 6666 568999999999999999999999999999
Q ss_pred eecCc-eEEEEecccCC
Q 023286 79 DFHGN-LIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr-~i~V~~a~~~~ 94 (284)
.|.|+ +|+|.++....
T Consensus 85 ~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp ECSTTCEEEEECSCCCC
T ss_pred ccCCCceEEEEEcchHh
Confidence 99998 99999997554
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=128.64 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ce
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN--KD 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng--~~ 79 (284)
.+++.+|||+|||+++|+++|+++|++||.|.. |+|+++ ||||||+|.+.++|++||+.|++ ..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356789999999999999999999999999988 778764 68999999999999999998874 57
Q ss_pred ecCceEEEEecccCCCCC
Q 023286 80 FHGNLIGVFIAESRGKDD 97 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~~~~ 97 (284)
|.|++|.|.+|+++....
T Consensus 94 l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp BTTBCCEEEECSSSSCCC
T ss_pred ECCeEEEEEEccCCCCCc
Confidence 999999999999876544
No 106
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=132.80 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||+++|+++|+++|.+||.|.. +.++.+..+++++|||||+|.+.++|++||+ ||+..|.|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 4579999999999999999999999999976 3466677799999999999999999999999 999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
.|.|.++.++.
T Consensus 95 ~i~V~~a~~~~ 105 (124)
T 1wel_A 95 FIQVHPITKKG 105 (124)
T ss_dssp CBEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999998654
No 107
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.3e-17 Score=133.40 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCC---eeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~---v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
+..+|||+|||+++|+++|+++|++||. |.. |+|++++. ++++|||||+|.+.++|++||+ |++..|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 4679999999999999999999999999 555 88999987 9999999999999999999999 999999
Q ss_pred cCceEEEEecccCC
Q 023286 81 HGNLIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~ 94 (284)
.++.|+|.++.++.
T Consensus 113 ~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 113 GHRYIEVFKSHRTE 126 (136)
T ss_dssp SSSEEEEEECCHHH
T ss_pred CCEEEEEEECChHH
Confidence 99999999987553
No 108
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=119.26 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=70.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.++|||+|||.++|+++|+++|++||.|.. |.|++ +||||+|.+.++|++||+.||+..|.|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEECS--------SEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 46789999999999999999999999999987 66653 499999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 72 ~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 72 KRMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEEESSCCCS
T ss_pred cEEEEEEccCCCC
Confidence 9999999987755
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-17 Score=125.55 Aligned_cols=81 Identities=20% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--e
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK--D 79 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~--~ 79 (284)
.+++.+|||+|||+++++++|+++|++||.|.. |.|+++ |+||||+|.++++|++||+.|++. .
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 356789999999999999999999999999988 667653 689999999999999999988654 5
Q ss_pred ecCceEEEEecccCCCC
Q 023286 80 FHGNLIGVFIAESRGKD 96 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~~~ 96 (284)
|.|++|.|++++.+...
T Consensus 78 i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSSBCEEEECSSSSCC
T ss_pred ECCEEEEEEEccCcccc
Confidence 89999999999876653
No 110
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=123.53 Aligned_cols=80 Identities=16% Similarity=0.363 Sum_probs=73.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.++|||+|||.++++++|+++|++||.|.. |+|+.+ ++||||+|.+.++|++||+.|++..|.|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45679999999999999999999999999988 777765 6899999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|.+++++...
T Consensus 89 ~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 89 HVVKCYWGKESPDM 102 (109)
T ss_dssp EECEEECCCCCCSS
T ss_pred cEEEEEecCCCCCC
Confidence 99999999887653
No 111
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.8e-17 Score=119.85 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=70.7
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEE
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIG 86 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~ 86 (284)
+|||+|||.++|+++|+++|++||.|.. |.|+.++.+++++|||||+|.++++|++||+ +++..|.|+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 5999999999999999999999999988 7799999999999999999999999999998 588999999999
Q ss_pred EEec
Q 023286 87 VFIA 90 (284)
Q Consensus 87 V~~a 90 (284)
|.+|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=9.8e-17 Score=120.68 Aligned_cols=74 Identities=20% Similarity=0.081 Sum_probs=68.9
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+..|||+||++.+||++|+++|.+||.|.. ++|+. +||||||+|.++++|++||+.||+..|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 4678999999999999999999999999998 66654 689999999999999999999999999999
Q ss_pred eEEEEecc
Q 023286 84 LIGVFIAE 91 (284)
Q Consensus 84 ~i~V~~a~ 91 (284)
+|+|++|.
T Consensus 72 ~I~V~~A~ 79 (89)
T 2wbr_A 72 TIFAESPS 79 (89)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99999984
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.8e-17 Score=125.65 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=70.5
Q ss_pred CCCCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--
Q 023286 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK-- 78 (284)
Q Consensus 2 ~~~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~-- 78 (284)
..++.+|||+|||+ ++|+++|+++|++||.|.. |+|+++ ++||||+|.++++|++||+.|++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 45788999999999 9999999999999999998 777765 479999999999999999998864
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.|.|++|.|.+|+...
T Consensus 78 ~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 78 LVFGKPVRVHLSQKYK 93 (102)
T ss_dssp EETTEECEEEEECCCT
T ss_pred eECCcEEEEEECCCCC
Confidence 5999999999998654
No 114
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=127.76 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.9
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||+++|+++|+++|++| .|.. |+|+.++. ++++|||||+|.++++|++|| .+++..|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4689999999999999999999999 7766 88999986 999999999999999999999 59999999999
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
|.|..+.++
T Consensus 85 i~V~~a~~~ 93 (109)
T 2dnn_A 85 VEVSPATER 93 (109)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCcc
Confidence 999998754
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=120.37 Aligned_cols=78 Identities=28% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCC-eeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL-LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN-KDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~-v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng-~~l 80 (284)
.+.++|||+|||.++|+++|+++|++||. |.. +.+ .+++||||+|.+.++|++||+.||+ ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 46789999999999999999999999999 443 333 2578999999999999999999999 999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|+.|+|++++++..
T Consensus 71 ~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 71 HGKIMEVDYSVSKKL 85 (93)
T ss_dssp TTEECEEEECCCCCC
T ss_pred CCEEEEEEEccCccc
Confidence 999999999987654
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=121.44 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+.+|||+|||.++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++||+.||+..|.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 478999999999999999999999999985 235543 5789999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|++++++.+
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999987653
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=122.30 Aligned_cols=77 Identities=32% Similarity=0.454 Sum_probs=71.7
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
++|||+|||.++|+++|+++|++||.|.. |.|+.+ +++||||+|.+.++|++||+.|++..|.|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 48999999999999999999999999987 778776 68999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
+|++++++..
T Consensus 68 ~V~~a~~~~~ 77 (101)
T 2hvz_A 68 RVELSTGMPR 77 (101)
T ss_dssp EEEESSSCCC
T ss_pred EEEEccCCCC
Confidence 9999987764
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=120.87 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=67.4
Q ss_pred CcEEEeccCCCCC------CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 5 NGSVYVCNLPHGT------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 5 ~~tIyV~nLp~~~------te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
+++|||+|||..+ |+++|+++|++||.|.. |.|+ +.+++++|||||+|.+.++|++||+.||+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 4689999999999 78999999999999988 6666 568999999999999999999999999999
Q ss_pred eecCc-eEEEE
Q 023286 79 DFHGN-LIGVF 88 (284)
Q Consensus 79 ~l~Gr-~i~V~ 88 (284)
.|.|+ +|+|+
T Consensus 71 ~~~g~~~l~V~ 81 (81)
T 2krb_A 71 KLDKQHTFRVN 81 (81)
T ss_dssp CCSSSSCCCCC
T ss_pred ccCCceeEEeC
Confidence 99999 88763
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=121.37 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|+++ ++||||+|.+.++|++||+.|++..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999987 767643 6899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|+|.+++++..
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999987654
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=6.7e-17 Score=122.59 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=74.6
Q ss_pred CCCCcEEEeccCCCCCCHHHHH----HHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 2 TMANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~----~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
.+++.+|||+|||.++++++|+ ++|++||.|.. |.|+. ++.++|||||+|.+.++|++||+.|++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 4578899999999999999999 99999999987 65653 577899999999999999999999999
Q ss_pred ceecCceEEEEecccCCC
Q 023286 78 KDFHGNLIGVFIAESRGK 95 (284)
Q Consensus 78 ~~l~Gr~i~V~~a~~~~~ 95 (284)
..|.|+.|+|++++++..
T Consensus 74 ~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CEETTEECEEEECSSCCT
T ss_pred CEECCcEEEEEEccCCCc
Confidence 999999999999987653
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4e-16 Score=119.06 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhcc--CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTI--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~--G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.++.+|||+|||.++|+++|+++|++| |.|.. |.+ .++||||+|.+.++|++||+.||+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKK--------IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 467899999999999999999999999 88876 444 357999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|+.|+|++++++..
T Consensus 77 ~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 77 DGSPIEVTLAKPVDK 91 (99)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987654
No 122
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-17 Score=122.02 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=72.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. | ..++.++|||||+|.+.++|++||+.|++..|.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~--------~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRL--------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE--------e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34679999999999999999999999998764 3 3468899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 81 ~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 RSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEECSSSCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987654
No 123
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=1e-16 Score=126.03 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccC-CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G-~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
....+|||+|||+++|+++|+++|++|| .|.. |.|+. ..++|||||+|.+.++|++||+.||+..|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3457999999999999999999999999 7876 55543 247899999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|+|+++...+
T Consensus 94 Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 94 GSVITVERDDNPP 106 (111)
T ss_dssp TEEEEEEESCC--
T ss_pred CeEEEEEECCCCC
Confidence 9999999997543
No 124
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=1.9e-17 Score=135.38 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=73.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+|||+|||+++|+++|+++|++|| |.. |+|++++. ++++|||||+|.+.++|++|| .+++..|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 456899999999999999999999999 545 88999986 999999999999999999999 6899999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|.++.++..
T Consensus 114 ~i~V~~a~~~~~ 125 (139)
T 2hgn_A 114 YIELFLNSTTGA 125 (139)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999887654
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=127.93 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~----~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
.++.+|||+|||+.+++++|+ ++|++||.|.. |.+. .+++++|||||+|.+.++|+.||..||+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 457899999999999999876 68999999977 5554 36789999999999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.|.|++|+|.+|+.+.
T Consensus 96 ~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 96 PFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCTTSCCEEEECCCCC
T ss_pred EeCCCEEEEEEccCcc
Confidence 9999999999998764
No 126
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.5e-16 Score=136.33 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=78.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.|.++|||+|||.++|+++|+++|++||.|.. |+|++|+.|++++|||||+|.+.++|++||+.+++..+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 35689999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|+|.++....
T Consensus 85 ~~i~~~~~~~~~ 96 (213)
T 4f02_A 85 KPVRIMWSQRDP 96 (213)
T ss_dssp EECEEEECCCCT
T ss_pred cccccccccccc
Confidence 999999987543
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.4e-16 Score=121.91 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
.+++|||+|||.++++++|+++|++||.|.. |+|+ +++|||||+|.+.++|++||..|++..|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4679999999999999999999999999987 6676 3578999999999999999999999999999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|+|++++++
T Consensus 92 ~l~V~~a~~~ 101 (101)
T 2la4_A 92 NLRTGWGKER 101 (101)
T ss_dssp ECCCCBCCCC
T ss_pred EEEEEeccCC
Confidence 9999998764
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-16 Score=120.70 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=70.3
Q ss_pred CCCCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+++++|||+|||+ ++|+++|+++|++||.|.. |.|. +|||||+|.+.++|++||+.|++..|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 35688999999998 9999999999999999987 6563 68999999999999999999999999
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.|++|.|++++++..
T Consensus 71 ~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 71 FGKKLILEVSSSNAR 85 (96)
T ss_dssp BTTTBCEEEEECCCC
T ss_pred CCcEEEEEEcCcCCC
Confidence 999999999987654
No 129
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=117.35 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++|+++|+++|++||.|.. |+|++ +||||+|.+.++|++||+.|++..|.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEECS--------SCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999999999999999999999999987 66653 499999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 71 ~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 71 KRINVELSTKGQK 83 (90)
T ss_dssp EECEEEESCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987654
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=4.1e-16 Score=119.09 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=70.3
Q ss_pred CCCCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 2 TMANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+++++|||+|||. ++++++|+++|++||.|.. |.| ++|||||+|.+.++|++||+.|++..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INI--------KNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEE--------CSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45788999999998 9999999999999999987 555 268999999999999999999999999
Q ss_pred cCceEEEEecccCC
Q 023286 81 HGNLIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~ 94 (284)
.|+.|+|++++++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 83 FGKKLILEVSSSNA 96 (97)
T ss_dssp TTEECEEEECCCCC
T ss_pred CCEEEEEEecCCCC
Confidence 99999999998653
No 131
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3.8e-16 Score=121.55 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=69.2
Q ss_pred CCcEEEeccCCCC-CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~-~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++.+|||+|||.+ +|+++|+++|++||.|.. |.| +++||||+|.+.++|++||+.|++..|.|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3479999999999 999999999999999987 555 57899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|+|++++++..
T Consensus 90 ~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 90 QTLDINMAGEPKP 102 (110)
T ss_dssp EECCEEESCCCCS
T ss_pred eEEEEEECCCCCC
Confidence 9999999986543
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3.2e-16 Score=122.69 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+.+. .++|||||+|.+.++|++||+.||+..|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999988 7787654 468999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|.|.++.++.
T Consensus 75 ~~l~v~~a~~~~ 86 (115)
T 3lqv_A 75 RYLVVLYYNANR 86 (115)
T ss_dssp CBCEEEECCHHH
T ss_pred eEEEEEEecCCh
Confidence 999999998643
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-17 Score=126.75 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCC---eeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGL---LKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~---v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
.+..+|||+|||+++|+++|+++|++||. |.. |+|+.++. ++++|||||+|.+.++|++||+ +++..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 35678999999999999999999999998 665 88999987 9999999999999999999999 99999
Q ss_pred ecCceEEEEecccCC
Q 023286 80 FHGNLIGVFIAESRG 94 (284)
Q Consensus 80 l~Gr~i~V~~a~~~~ 94 (284)
|.++.|.|.++.++.
T Consensus 79 ~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 79 MGQRYVEVYEINNED 93 (107)
T ss_dssp SSSSCCCCEECCHHH
T ss_pred eCCeEEEEEECCHHH
Confidence 999999999988654
No 134
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=118.24 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
....+|||+|||.++|+++|+++|++||.|.. |+.++.+++ ||||+|.+.++|++||+ |++..|.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~----------v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS----------VVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEE----------EEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE----------EEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 45679999999999999999999999999986 477777766 99999999999999999 99999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 72 ~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 72 HRLRVRPREQKEF 84 (94)
T ss_dssp EECCCBCSCCSCC
T ss_pred EEEEEEECCcCCC
Confidence 9999998876554
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=5.1e-16 Score=127.35 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=78.5
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++++|||+|||.++|+++|+++|++||.|.. |++++++.+++++|||||+|.++++|++||+.|++..|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 3689999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
.|.|.++.+..
T Consensus 73 ~l~v~~~~~~~ 83 (167)
T 1fxl_A 73 TIKVSYARPSS 83 (167)
T ss_dssp ECEEEECCCCC
T ss_pred eEEEEecCCCc
Confidence 99999998654
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=134.27 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=77.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++++|||+|||.++++++|+++|++||.|.. |.|+.++ ++.++|||||+|.+.++|++||+.|++..|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 34679999999999999999999999999987 8899998 89999999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|+|++|....
T Consensus 157 r~l~V~~a~~~~ 168 (177)
T 2f3j_A 157 RPMDIQLVASQI 168 (177)
T ss_dssp SBCEEEEESSGG
T ss_pred EEEEEEEecCCC
Confidence 999999997653
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.4e-16 Score=128.90 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++++|||+|||.++++++|+++|++||.|.. |+|++++.++.++|||||+|.++++|++||+.|++..|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 6789999999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
+|.|.++.+...
T Consensus 74 ~l~v~~~~~~~~ 85 (168)
T 1b7f_A 74 RLKVSYARPGGE 85 (168)
T ss_dssp ECEEEECCCCSS
T ss_pred EEEEEecCCCcc
Confidence 999999986543
No 138
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=127.84 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCee--ecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~--~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+..+|||+|||+++|+++|+++|++||.|. ... |+|+.++ +++++|||||+|.+.++|++||+. ++..|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4568999999999999999999999999863 111 8899885 899999999999999999999985 99999
Q ss_pred cCceEEEEecccCC
Q 023286 81 HGNLIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~ 94 (284)
.++.|.|..+.++.
T Consensus 93 ~gR~i~V~~a~~~e 106 (123)
T 2dha_A 93 GKRYIELFRSTAAE 106 (123)
T ss_dssp SSCEECCEEECHHH
T ss_pred CCeEEEEEECCHHH
Confidence 99999999987543
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=3.8e-16 Score=121.74 Aligned_cols=77 Identities=29% Similarity=0.448 Sum_probs=70.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.|+ +|||||+|.+.++|++||+.|++..|.|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45789999999999999999999999999987 6666 6899999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|++++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 9999999987654
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=1.3e-16 Score=122.28 Aligned_cols=81 Identities=23% Similarity=0.340 Sum_probs=75.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++.+|||+|||.++++++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+ ++..|+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 4579999999999999999999999999988 8899998 89999999999999999999998 89999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.++.++..
T Consensus 77 ~l~v~~a~~~~~ 88 (102)
T 2xs2_A 77 KLKLGPAIRKQN 88 (102)
T ss_dssp ECEEEEEEECC-
T ss_pred EEEEEECCcCcc
Confidence 999999987654
No 141
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=115.37 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF-NNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l-ng~~l~ 81 (284)
.+..+|||+|||.++++++|+++|++||.|.. |++++ +++||||+|.+.++|++||+.| ++..|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 35679999999999999999999999999988 77775 3689999999999999999988 999999
Q ss_pred CceEEEEecc
Q 023286 82 GNLIGVFIAE 91 (284)
Q Consensus 82 Gr~i~V~~a~ 91 (284)
|++|+|++|+
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999999974
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.4e-16 Score=126.23 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=77.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|++||..||+..|.|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 35679999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred ceEEEEeccc
Q 023286 83 NLIGVFIAES 92 (284)
Q Consensus 83 r~i~V~~a~~ 92 (284)
+.|+|.+|++
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999863
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=128.57 Aligned_cols=90 Identities=23% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++++|||+|||.++|+++|+++|++||.|..+.. ..+.-+....+++++|||||+|.+.++|++||..||+..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~---~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQ---RIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHH---HHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc---cceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 46789999999999999999999999999875200 000011223468899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.+|++...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987544
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=124.94 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCCCcEEEeccCCCC-CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--Cc
Q 023286 2 TMANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN--NK 78 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~-~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln--g~ 78 (284)
..++.+|||+|||++ +|+++|+++|++||.|.. |+|++ +||||||+|.+.++|++||+.|+ +.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 356789999999998 999999999999999988 77763 46899999999999999999886 45
Q ss_pred eecCceEEEEecccCCC
Q 023286 79 DFHGNLIGVFIAESRGK 95 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~~ 95 (284)
.|.|++|.|.+|+.+..
T Consensus 88 ~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 88 WFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CSSSSCCEEEEECSCSS
T ss_pred eECCEEEEEEECccccc
Confidence 69999999999986654
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=117.69 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV-WLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V-~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+.+|||+|||+++|+++|+++|.+||.|.. | .|+.++.++. |||+|.+.++|++||+.||+..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999999999999988 7 4788776543 9999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
++|+|+++.++.
T Consensus 82 ~~l~V~~a~~~~ 93 (96)
T 2e44_A 82 FTLKVAYIPDEM 93 (96)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEEcCccc
Confidence 999999998874
No 146
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=5.3e-16 Score=122.14 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+|||+|||+++|+++|+++|.+||.|.. |.|+.+ |||||+|.+.++|++||+.||+..|+|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3578999999999999999999999999988 667654 8999999999999999999999999999
Q ss_pred e-----EEEEecccC
Q 023286 84 L-----IGVFIAESR 93 (284)
Q Consensus 84 ~-----i~V~~a~~~ 93 (284)
. |+|..+.++
T Consensus 80 ~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 80 EGETAYIRVKVDGPR 94 (115)
T ss_dssp TSCCCBCEEEECC--
T ss_pred EeeeEEEEeccCCCC
Confidence 8 666666554
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=7.9e-16 Score=115.08 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
..+.+|||+|||+++++++|+++|++| .|.. |+|. +++|||||+|.++++|++||+.||+..|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 456899999999999999999999999 8876 6563 588999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
++|+|+++....
T Consensus 68 ~~l~V~~a~~~~ 79 (88)
T 1wg1_A 68 KDLIVQLQPTDA 79 (88)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEEcCCCc
Confidence 999999997543
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=5.4e-16 Score=127.16 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||+++|+++|+++|++||.|.. |+|+.+ ++|||||+|.+.++|++||+.||+..|.|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE--------EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 778765 57999999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
++|+|+++.++.
T Consensus 138 ~~l~v~~a~~~~ 149 (150)
T 2i2y_A 138 CRVRVELSNGEK 149 (150)
T ss_dssp SCCEEEECCCCC
T ss_pred eEEEEEEcCCCC
Confidence 999999998763
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1.5e-15 Score=130.12 Aligned_cols=84 Identities=27% Similarity=0.337 Sum_probs=79.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc
Confidence 4579999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.++.++..
T Consensus 196 ~i~V~~a~~~~~ 207 (216)
T 2qfj_A 196 YLRVGKAVTPPM 207 (216)
T ss_dssp BCEEEECSSCSS
T ss_pred EEEEEEecCCCC
Confidence 999999987754
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.4e-16 Score=126.67 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCee--ecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLK--KDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~--~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+..+|||+|||+++|+++|+++|++|+ |. . |+|+.++. ++++|||||+|.++++|++||+ +++..|.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~ 109 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG 109 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC
Confidence 467999999999999999999999994 55 4 88999987 9999999999999999999998 4779999
Q ss_pred CceEEEEecccC
Q 023286 82 GNLIGVFIAESR 93 (284)
Q Consensus 82 Gr~i~V~~a~~~ 93 (284)
++.|.|.++.++
T Consensus 110 gR~I~V~~a~~~ 121 (126)
T 2hgm_A 110 HRYIEVFKSSQE 121 (126)
T ss_dssp TBCCCCEEECHH
T ss_pred CEEEEEEECCHH
Confidence 999999998754
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=113.55 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|| ++|+++|+++|++||.|.. |.|. +++|||||+|.+.++|++||+.|++..|.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 35689999996 8999999999999999987 6563 467899999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
++|+|.++.++...
T Consensus 77 ~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 77 VQLKVNIARKQPML 90 (97)
T ss_dssp EEEEEECCSSCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999999877553
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=1.7e-15 Score=128.11 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=80.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |.|+.++.++.++|||||+|.++++|++||+.|++..|.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE--------EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35689999999999999999999999999988 8899999899999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++.+
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.3e-15 Score=128.69 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=75.1
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||.. ++..|.|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999985 79999999
Q ss_pred eEEEEecccCCCC
Q 023286 84 LIGVFIAESRGKD 96 (284)
Q Consensus 84 ~i~V~~a~~~~~~ 96 (284)
.|.|.+|.++...
T Consensus 174 ~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 174 NCEVRKALSKQEM 186 (196)
T ss_dssp ECEEEECC-----
T ss_pred EEEEEecCChhHh
Confidence 9999999987664
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=120.80 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
..++|||+|||.++|+++|+++|++||.|.. |.|+. +++||||+|.+.++|++||+.||+..|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 3569999999999999999999999999987 65653 568999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
.|.|+++....
T Consensus 75 ~l~V~~a~~~~ 85 (111)
T 1whx_A 75 PLYLEWAPIGV 85 (111)
T ss_dssp BCEEEEEETTT
T ss_pred EEEEEECCCCc
Confidence 99999998643
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.8e-16 Score=122.91 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=71.0
Q ss_pred cEEEeccC----CCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH
Q 023286 6 GSVYVCNL----PHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED----PHA----ALAAVE 73 (284)
Q Consensus 6 ~tIyV~nL----p~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s----~e~----A~~Ai~ 73 (284)
.+|||+|| |+.+++.+|+++|++||.|.. +.++.|+.|+.++||+||+|.+ +++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 999999999999999999998 8899999999999999999996 333 788988
Q ss_pred --HhCCceecCceEEEEecc
Q 023286 74 --WFNNKDFHGNLIGVFIAE 91 (284)
Q Consensus 74 --~lng~~l~Gr~i~V~~a~ 91 (284)
.+++..|+|++|+|.+..
T Consensus 75 ~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HTTTTCEEETTEEEEEEECC
T ss_pred HhhhcCCeecCcEEEEEECc
Confidence 789999999999999865
No 156
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=6.6e-16 Score=127.20 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=76.5
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
+.+|||+|||.++|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+ +++..|.|+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIID--------AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSE--------EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 568999999999999999999999999988 8899999899999999999999999999998 8999999999
Q ss_pred EEEEecccCC
Q 023286 85 IGVFIAESRG 94 (284)
Q Consensus 85 i~V~~a~~~~ 94 (284)
|.|.+|.+++
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999998763
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.8e-15 Score=125.16 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=75.7
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++|++.||+..|.|++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKA--------FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 578999999999999999999999999988 889999989999999999999999999999999999999999
Q ss_pred EEEEecc
Q 023286 85 IGVFIAE 91 (284)
Q Consensus 85 i~V~~a~ 91 (284)
|.|++|.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999874
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.1e-15 Score=127.29 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.++++|++||+. ++..|.|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 4579999999999999999999999999998 88999999999999999999999999999985 88999999
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|.|.++.+...
T Consensus 83 ~l~v~~~~~~~~ 94 (196)
T 1l3k_A 83 VVEPKRAVSRED 94 (196)
T ss_dssp ECEEEECCC---
T ss_pred EeeeecccCccc
Confidence 999999876543
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=119.64 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCCcEEEe--ccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 2 TMANGSVYV--CNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 2 ~~~~~tIyV--~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
..++.+||| +||+.++|+++|+++|++||.|.. |.|+. .||||||+|.++++|++||+.||+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 356789999 779999999999999999999987 65543 36899999999999999999999998
Q ss_pred e-----cCceEEEEecccCCC
Q 023286 80 F-----HGNLIGVFIAESRGK 95 (284)
Q Consensus 80 l-----~Gr~i~V~~a~~~~~ 95 (284)
| .+++|.|.++...+.
T Consensus 88 ~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 88 VVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp EECTTSCEEECEEEEESCCCC
T ss_pred EccccCCCcEEEEEecccCcc
Confidence 8 689999999986544
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=7e-16 Score=133.51 Aligned_cols=81 Identities=26% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
...+|||+|||.++|+++|+++|++||.|.. |+|++++ +.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEE--------EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 3568999999999999999999999999998 7888886 45899999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
+|.|.+|.++.
T Consensus 172 ~i~V~~a~~~~ 182 (213)
T 4f02_A 172 KVFVGRFKSRK 182 (213)
T ss_dssp ECEEEECCCHH
T ss_pred EEEEEEcCCCc
Confidence 99999998754
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=113.64 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCCcE-EEeccCCCCCCHHH----HHHHHhcc-CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 023286 2 TMANGS-VYVCNLPHGTDEDM----LAEYFGTI-GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (284)
Q Consensus 2 ~~~~~t-IyV~nLp~~~te~d----L~~~F~~~-G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l 75 (284)
.+|+.| |||+|||+.+++++ |+++|++| |.|.. | |+ |||||+|.+.++|++|++.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--------V-------tg---G~AfV~F~~~esA~~A~~~l 66 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--------I-------TG---CSAILRFINQDSAERAQKRM 66 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--------C-------CT---TCEEEEESSHHHHHHHHHHH
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--------E-------ec---CEEEEEECCHHHHHHHHHHh
Confidence 356777 99999999999988 55899999 49876 3 33 99999999999999999999
Q ss_pred CCceecCceEEEEecccCCCC
Q 023286 76 NNKDFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 76 ng~~l~Gr~i~V~~a~~~~~~ 96 (284)
++..|.|++|+|.+|+.+.+-
T Consensus 67 ~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 67 ENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TTCCSSSSCCEEESSCCSCCC
T ss_pred cCCccCCceEEEEecCCCcce
Confidence 999999999999999977653
No 162
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=113.94 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=66.0
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++++|||+|||.++|+++|+++|++||.|.. |+|+.+ ++|||||+|.+.++|++++.. ...+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g 67 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKG 67 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCC
Confidence 57899999999999999999999999999987 667654 689999999999999865431 345589
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|.|.++.++..
T Consensus 68 ~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 68 ISVHISNAEPKHN 80 (88)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 9999999987755
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=6.3e-15 Score=118.89 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=69.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecC--
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDFHG-- 82 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGf-aFV~F~s~e~A~~Ai~~lng~~l~G-- 82 (284)
-.|||+||++.+|+++|+++|++||.|.. |+|+.+ .++| |||+|.+.++|++||+.|||..|.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 36789999999999999999999999998 767653 3678 9999999999999999999999998
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
++|+|++++++..
T Consensus 96 ~~LrI~~ak~~~l 108 (130)
T 3zzy_A 96 CTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEEECSCSSC
T ss_pred cEEEEEecCCCce
Confidence 8999999987643
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=4e-15 Score=111.94 Aligned_cols=76 Identities=20% Similarity=0.332 Sum_probs=61.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--e
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD--F 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~--l 80 (284)
.+..+|||+|||+++|+++|+++|++||.|.. |+|+++ +||||||+|.++++|++ +++.. +
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~ 71 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLII 71 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCccc
Confidence 46789999999999999999999999999988 777763 78999999999999984 44554 4
Q ss_pred cCceEEEEecccCCC
Q 023286 81 HGNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~~ 95 (284)
.++.|.|.+|.++..
T Consensus 72 ~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 72 KGISVHISNAEPKHN 86 (89)
T ss_dssp TTEEEEEEECC----
T ss_pred CCEEEEEEEcCCCCc
Confidence 599999999987653
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=5.2e-15 Score=122.36 Aligned_cols=85 Identities=26% Similarity=0.294 Sum_probs=76.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTN--EYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg--~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
+++.+|||+|||.++|+++|+++|++||.|.. |+|++++.++ +++|||||+|.++++|++||+.|++..+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKV 72 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEE
Confidence 46789999999999999999999999999998 8899999887 8999999999999999999999999887
Q ss_pred c---CceEEEEecccCCC
Q 023286 81 H---GNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~---Gr~i~V~~a~~~~~ 95 (284)
. ++.|.|.++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CTTCSSCCEEEECGGGCC
T ss_pred ccCCccceEEcccccccc
Confidence 6 67888888776544
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=5.8e-15 Score=121.44 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=75.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+..+|||+|||.++++++|+++|++||.|.. |.|++++.++.++|||||+|.+.++|.+|++.|++..|.|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ--------KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 35679999999999999999999999999988 8899999899999999999999999999999999999988
Q ss_pred --ceEEEEec
Q 023286 83 --NLIGVFIA 90 (284)
Q Consensus 83 --r~i~V~~a 90 (284)
++|+|++|
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=4.8e-15 Score=124.05 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=69.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC--c
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG--N 83 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G--r 83 (284)
.+|||+||++.+|+++|+++|++||.|.. |+|+.++ +++||||+|.+.++|++|++.|||..|.+ +
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 46899999999999999999999999998 7776432 57899999999999999999999999976 9
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
+|+|++++++.
T Consensus 115 ~L~V~~Ak~~~ 125 (164)
T 1sjr_A 115 TLRIDFSKLTS 125 (164)
T ss_dssp CEEEEECSSSS
T ss_pred EEEEEEecCCc
Confidence 99999999764
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=2.7e-15 Score=128.58 Aligned_cols=81 Identities=31% Similarity=0.302 Sum_probs=73.6
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|++||+.|++..|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 478999999999999999999999999998 889999989999999999999999999999999999999999
Q ss_pred EEEEecccC
Q 023286 85 IGVFIAESR 93 (284)
Q Consensus 85 i~V~~a~~~ 93 (284)
|.|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999887654
No 169
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=9.5e-15 Score=113.56 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCcEEEeccCCC-----CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHh
Q 023286 2 TMANGSVYVCNLPH-----GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT-NEYKGDATVTYEDPHAALAAVEWF 75 (284)
Q Consensus 2 ~~~~~tIyV~nLp~-----~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t-g~~rGfaFV~F~s~e~A~~Ai~~l 75 (284)
..++.+|+|.||.. +-++++|+++|++||.|.. |+|++++.+ +.++||+||+|.++++|++|++.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~--------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK--------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE--------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE--------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 46789999999973 3378999999999999998 889988754 689999999999999999999999
Q ss_pred CCceecCceEEEEeccc
Q 023286 76 NNKDFHGNLIGVFIAES 92 (284)
Q Consensus 76 ng~~l~Gr~i~V~~a~~ 92 (284)
||..|.|+.|.|.++.+
T Consensus 77 nG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 77 NGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TTCEETTEECEEEECCH
T ss_pred CCCEECCcEEEEEEcCH
Confidence 99999999999999975
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=4.8e-15 Score=109.87 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=63.8
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhcc----C-------CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTI----G-------LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~----G-------~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~A 71 (284)
.+..+|||+|||.++|+++|+++|++| | .|.. |++.++ +|||||+|.+.++|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~~------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQD------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECSS------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecCC------CcEEEEEcCCHHHHHHH
Confidence 457899999999999999999999999 7 6665 555543 68999999999999999
Q ss_pred HHHhCCceecCceEEEEe
Q 023286 72 VEWFNNKDFHGNLIGVFI 89 (284)
Q Consensus 72 i~~lng~~l~Gr~i~V~~ 89 (284)
| .||+..|.|+.|+|+.
T Consensus 70 ~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 70 M-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp G-GGTTCEETTEECEEEC
T ss_pred H-hcCCCEECCeEEEEeC
Confidence 9 9999999999999873
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=116.60 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT---NEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t---g~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
.++.+|||+|||+++|+++|+++|++||.|. +.++.++.+ ++++|||||+|.++++|++||+.|+ .
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 4578999999999999999999999999987 346777776 7999999999999999999999883 3
Q ss_pred ecCceEEEEecc
Q 023286 80 FHGNLIGVFIAE 91 (284)
Q Consensus 80 l~Gr~i~V~~a~ 91 (284)
++|+.|.+..+.
T Consensus 75 ~~G~~~~~~~~~ 86 (114)
T 2dnl_A 75 EDGKLYLCVSSP 86 (114)
T ss_dssp ETTEEEEEECCS
T ss_pred cCCcEEEeccCC
Confidence 566655555433
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8e-15 Score=120.01 Aligned_cols=81 Identities=28% Similarity=0.391 Sum_probs=74.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
.+|||+|||.++|+++|+++|++||.|.. |+|+.++. ++++|||||+|.+.++|++||+.|++..|.++.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 48999999999999999999999999998 88988874 7799999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 023286 86 GVFIAESRGK 95 (284)
Q Consensus 86 ~V~~a~~~~~ 95 (284)
.|.++.+...
T Consensus 72 ~v~~~~~~~~ 81 (166)
T 3md3_A 72 KINWAFQSQQ 81 (166)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=7.3e-15 Score=127.11 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCCcEEEeccCC-CCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLP-HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp-~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+++.+|||+||| ..+|+++|+++|++||.|.. |+|+++ .+|||||+|.++++|++||+.||+..|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK--------VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE--------EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE--------EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478899999999 89999999999999999998 778765 3799999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|.|.+++.+.
T Consensus 69 g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 69 GQKMNVCVSKQPA 81 (205)
T ss_dssp TEECEEEECSCSC
T ss_pred CceEEEEEccCCc
Confidence 9999999997554
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.57 E-value=1.1e-14 Score=119.18 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++++++|+++|++||.|.. |+++.++.++.++|||||+|.+.++|++|++.||+..|.|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIIT--------SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4578999999999999999999999999998 88999998999999999999999999999999999999996
Q ss_pred e--EEEEec
Q 023286 84 L--IGVFIA 90 (284)
Q Consensus 84 ~--i~V~~a 90 (284)
. |.|.+|
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888775
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.4e-14 Score=115.94 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=66.8
Q ss_pred EEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceecC--c
Q 023286 7 SVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGD-ATVTYEDPHAALAAVEWFNNKDFHG--N 83 (284)
Q Consensus 7 tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGf-aFV~F~s~e~A~~Ai~~lng~~l~G--r 83 (284)
.|||+||++.+|+++|+++|++||.|.. |+|+. + .|| |||+|.+.++|++||+.|||..|.+ +
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 3689999999999999999999999998 76754 2 276 9999999999999999999999988 6
Q ss_pred eEEEEecccCCC
Q 023286 84 LIGVFIAESRGK 95 (284)
Q Consensus 84 ~i~V~~a~~~~~ 95 (284)
.|+|++|+++..
T Consensus 93 ~l~V~~Ak~~~l 104 (124)
T 2e5i_A 93 TLKIEYARPTRL 104 (124)
T ss_dssp EEEEECCSCSCC
T ss_pred EEEEEEecCCcc
Confidence 999999987753
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.4e-14 Score=119.69 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec--
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-- 81 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~-- 81 (284)
+..+|||+|||.++|+++|+++|++||.|.. |+|+.++ +++++|||||+|.+.++|++||+.||+..+.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEE--------CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE--------EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4679999999999999999999999999988 8898886 5899999999999999999999999998777
Q ss_pred -CceEEEEecc
Q 023286 82 -GNLIGVFIAE 91 (284)
Q Consensus 82 -Gr~i~V~~a~ 91 (284)
+++|.|.+|.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 3999999974
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=1.6e-14 Score=114.96 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=69.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|| ++|+++|+++|++||.|.. |.|. .++|||||+|.+.++|++||+.|++..|.|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~--------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE--------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35689999996 6999999999999999987 6664 467999999999999999999999999999
Q ss_pred ceEEEEecccCCCC
Q 023286 83 NLIGVFIAESRGKD 96 (284)
Q Consensus 83 r~i~V~~a~~~~~~ 96 (284)
+.|+|.++.++...
T Consensus 101 ~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 101 VQLKVNIARKQPML 114 (121)
T ss_dssp CBCEEEECCSSCC-
T ss_pred eEEEEEEeCCCCCC
Confidence 99999999877543
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=7.2e-15 Score=120.91 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=73.7
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++.+|||+|||.++|+++|+++|++||.|.. |+|++++.|++++|||||+|.++++|++||+. ...|.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 5789999999999999999999999999998 88999999999999999999999999999984 5788999
Q ss_pred eEEEEecccC
Q 023286 84 LIGVFIAESR 93 (284)
Q Consensus 84 ~i~V~~a~~~ 93 (284)
.|.|.++.++
T Consensus 72 ~i~v~~~~~~ 81 (167)
T 2cjk_A 72 VIDPKRAIPR 81 (167)
T ss_dssp ECCCEECCCH
T ss_pred Ecccccccch
Confidence 9999887654
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.6e-14 Score=120.08 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
+..+|||+|||.++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+||+.|++..|.|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~-----------~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRL-----------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEE-----------E--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE-----------e--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4579999999999999999999999998754 3 56789999999999999999999999999999999
Q ss_pred eEEEEecccCC
Q 023286 84 LIGVFIAESRG 94 (284)
Q Consensus 84 ~i~V~~a~~~~ 94 (284)
.|.|++|.+++
T Consensus 165 ~i~v~~a~~k~ 175 (175)
T 1fje_B 165 SVSLYYTGEKG 175 (175)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEecCCCC
Confidence 99999998763
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=4.4e-14 Score=126.49 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCCcEEEeccCCCCCCHHHHH----HHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 3 MANGSVYVCNLPHGTDEDMLA----EYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~----~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
.++.+|||+|||.++|+++|+ ++|++||.|.. |+|++ +++++|||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 567899999999999999976 89999999987 66664 6789999999999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.|.|+.|+|.+++...
T Consensus 76 ~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDS 91 (282)
T ss_pred eeCCcEEEEEEeccCc
Confidence 9999999999997654
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=3.1e-14 Score=128.12 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=75.6
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT-TNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~-~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~-tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
.+..+|||+|||.+ +|+++|+++|++||.|.. |+|+.+.. |+.++|||||+|.++++|++|| .||+..|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEK--------INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE--------EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeE--------EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35689999999999 999999999999999998 88888876 6999999999999999999999 9999999
Q ss_pred cCceEEEEecccCC
Q 023286 81 HGNLIGVFIAESRG 94 (284)
Q Consensus 81 ~Gr~i~V~~a~~~~ 94 (284)
.|+.|.|.+|.+++
T Consensus 279 ~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 279 GNREISVSLADKKP 292 (292)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCcEEEEEEecCCC
Confidence 99999999998763
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=1e-13 Score=124.19 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
.++..+|||+|||.++|+++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+||+.|++..|.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLER--------CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346789999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred CceEEEEecccCCC
Q 023286 82 GNLIGVFIAESRGK 95 (284)
Q Consensus 82 Gr~i~V~~a~~~~~ 95 (284)
|+.|.|.++.+...
T Consensus 164 g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 164 PRTLYVHWTDAGQL 177 (284)
T ss_dssp TEECEEEECCGGGC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999987643
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=8.5e-14 Score=119.39 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=71.1
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNL 84 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~ 84 (284)
..+|||+|||.++|+++|+++|++||.|.. |+|+++. ++.++|||||+|.+.++|++||+.++ ..|.|+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 368999999999999999999999999998 8898887 48999999999999999999998654 5899999
Q ss_pred EEEEeccc
Q 023286 85 IGVFIAES 92 (284)
Q Consensus 85 i~V~~a~~ 92 (284)
|.|.++..
T Consensus 179 l~V~~~~~ 186 (193)
T 2voo_A 179 LLILFKDD 186 (193)
T ss_dssp CEEEETTT
T ss_pred EEEEEhHH
Confidence 99998764
No 184
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=99.49 E-value=7e-15 Score=111.71 Aligned_cols=87 Identities=28% Similarity=0.485 Sum_probs=26.8
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCe
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (284)
+.|||.|+ .|...||+.++.|++|..+||.......... ... ...++.. ... ..-..+++||.|+.|.++
T Consensus 5 ~~g~W~C~--~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~---~~~--~~~~~~~-~g~--~~f~~~~g~W~C~~C~~~ 74 (92)
T 3gj8_B 5 SVGSWECP--VCCVSNKAEDSRCVSCTSEKPGLVSASSSNS---VPV--SLPSGGC-LGL--DKFKKPEGSWDCEVCLVQ 74 (92)
T ss_dssp ---------------------------------------------------------------------CCEECTTTCCE
T ss_pred CCcCCCCC--cCCCEeccccceecccCCCCCCCCCcccccc---Ccc--ccccccc-ccc--cccCCCCCcccCCcCCcC
Confidence 67999999 8999999999999999999986432111000 000 0000000 000 001125799999999999
Q ss_pred eecccccCccCCCCCCC
Q 023286 225 NWAKRTKCNICNTNKPG 241 (284)
Q Consensus 225 n~~~r~~c~~c~~~~~~ 241 (284)
|++.++.|+.|.+|||.
T Consensus 75 N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 75 NKADSTKCIACESAKPG 91 (92)
T ss_dssp ECSSCSBCTTTCCBCC-
T ss_pred ChhhcccccccCCCCCC
Confidence 99999999999999996
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=6.4e-14 Score=122.43 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=72.9
Q ss_pred CCCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+++.+|||+|||. ++++++|+++|++||.|.. |+|++++ +|||||+|.+.++|++||+.|++..|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4578999999999 9999999999999999988 7788765 689999999999999999999999999
Q ss_pred CceEEEEecccCC
Q 023286 82 GNLIGVFIAESRG 94 (284)
Q Consensus 82 Gr~i~V~~a~~~~ 94 (284)
|+.|.|.++..+.
T Consensus 99 g~~l~v~~a~~~~ 111 (229)
T 2adc_A 99 GKPIRITLSKHQN 111 (229)
T ss_dssp SSBCEEECCSCCC
T ss_pred CeEEEEEEecCcc
Confidence 9999999998654
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=1.2e-13 Score=123.74 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=77.2
Q ss_pred CCcEEEeccCCCCC-CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHGT-DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~-te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+..+|||+|||.++ |+++|+++|++||.|.. |.|+.++ ++.++|||||+|.++++|.+||..|++..|.|
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTF--------CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE--------EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEE--------EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 56799999999995 99999999999999988 7788887 79999999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 254 ~~l~v~~a~~~~~ 266 (284)
T 3smz_A 254 SHLRVSFCAPGPP 266 (284)
T ss_dssp EECEEEECCSSSC
T ss_pred eEEEEEEecCCCc
Confidence 9999999987754
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=7.9e-14 Score=123.58 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCcEEEeccCCCCC---------CHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023286 3 MANGSVYVCNLPHGT---------DEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~---------te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
.++.+|||+||+..+ ++++|+++|++||.|.. |+|+. ++|||||+|.+.++|+.||+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 457899999999998 79999999999999998 77774 47899999999999999999
Q ss_pred HhCCcee------------cCceEEEEecccCC
Q 023286 74 WFNNKDF------------HGNLIGVFIAESRG 94 (284)
Q Consensus 74 ~lng~~l------------~Gr~i~V~~a~~~~ 94 (284)
.|++..| .|+.|.|.+|+..+
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999 89999999998654
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=2.5e-14 Score=118.82 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=72.1
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.++.+|||+|||.++|+++|+++|.+||.+... ++.+..++.++|||||+|.++++|++||+ |++..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~---------~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL---------AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC---------CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE---------EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC
Confidence 457899999999999999999999999987541 34445578899999999999999999995 99999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 81 ~~l~v~~~~~~~~ 93 (175)
T 1fje_B 81 NEIKLEKPKGRDS 93 (175)
T ss_dssp EEEEEECCCCSSC
T ss_pred eEEEEecCCCccc
Confidence 9999999986543
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-13 Score=105.08 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=69.4
Q ss_pred CCCcEEEeccCCCCCC-----------HHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 023286 3 MANGSVYVCNLPHGTD-----------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~t-----------e~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~A 71 (284)
.++.+|+|.||..... +++|+++|++||.|.. |.| .++ .++|||||+|.+.++|++|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--------v~i-~~~---~~~G~afV~f~~~~~A~~A 80 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--------LLL-FDR---HPDGVASVSFRDPEEADYC 80 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--------EEE-ETT---CTTCEEEEECSCHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--------EEE-ecC---CCCEEEEEEECCHHHHHHH
Confidence 4678999999954432 5899999999999988 644 454 3799999999999999999
Q ss_pred HHHhCCceecCceEEEEecccCCC
Q 023286 72 VEWFNNKDFHGNLIGVFIAESRGK 95 (284)
Q Consensus 72 i~~lng~~l~Gr~i~V~~a~~~~~ 95 (284)
|+.||+..|.|++|.|.++.++..
T Consensus 81 i~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 81 IQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHcCCCEECCcEEEEEEeCCCCC
Confidence 999999999999999999987654
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.3e-13 Score=119.29 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCe--eecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLL--KKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDF 80 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v--~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l 80 (284)
+++.+|||+|||+++|+++|+++|++||.| .. |+|+.++ +..+|||||+|.+.++|.+||..||+..|
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~--------v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS--------VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE--------EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 456799999999999999999999999998 55 7787765 55679999999999999999999999999
Q ss_pred cCc----eEEEEec
Q 023286 81 HGN----LIGVFIA 90 (284)
Q Consensus 81 ~Gr----~i~V~~a 90 (284)
.+. ++.|+++
T Consensus 191 ~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 191 KNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSSCEECEEE
T ss_pred cCCCCCcceEEEec
Confidence 875 5777665
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.4e-13 Score=121.65 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=69.6
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-C
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH-G 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~-G 82 (284)
++.+|||+|||.++|+++|+++|++||.|.. |+|+.++ +|||||+|.+.++|++||+.||+..|. |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~--------v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKE--------VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE--------EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 5678999999999999999999999999998 7787654 589999999999999999999999999 9
Q ss_pred ceEEEEecc
Q 023286 83 NLIGVFIAE 91 (284)
Q Consensus 83 r~i~V~~a~ 91 (284)
+.|+|++++
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999986
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=9.4e-14 Score=117.89 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=71.9
Q ss_pred CCcEEEeccCCC-CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPH-GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~-~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
.+++|||+|||. ++++++|+++|++||.|.. |+|+.++ +|||||+|.++++|++||+.|++..|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 578999999999 9999999999999999987 7777764 6899999999999999999999999999
Q ss_pred ceEEEEecccCC
Q 023286 83 NLIGVFIAESRG 94 (284)
Q Consensus 83 r~i~V~~a~~~~ 94 (284)
+.|.|.++..+.
T Consensus 69 ~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 KPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEECCCCS
T ss_pred eEEEEEEecCCC
Confidence 999999998654
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=2.9e-13 Score=105.10 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCCcEEEeccC--CCCCC--------HHHHHHHHhccCCeeecCCCCCCcEEEeecCCC--CCcccEEEEEeCCHHHHHH
Q 023286 3 MANGSVYVCNL--PHGTD--------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTT--NEYKGDATVTYEDPHAALA 70 (284)
Q Consensus 3 ~~~~tIyV~nL--p~~~t--------e~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~t--g~~rGfaFV~F~s~e~A~~ 70 (284)
.|+..|.|.|| |.++. +++|+++|++||.|.. |.|++++.+ ..++||+||+|.++++|++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--------v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~ 74 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--------IEIPRPVDGVEVPGCGKIFVEFTSVFDCQK 74 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--------EECCCCBTTBCCTTTTEEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--------EEEeccCCCCCcCCcEEEEEEECCHHHHHH
Confidence 57889999998 33443 3689999999999998 888888765 3689999999999999999
Q ss_pred HHHHhCCceecCceEEEEecccC
Q 023286 71 AVEWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 71 Ai~~lng~~l~Gr~i~V~~a~~~ 93 (284)
|++.|||..|.|++|.|.++...
T Consensus 75 Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 75 AMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHhCCCEeCCCEEEEEEeCHH
Confidence 99999999999999999998643
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=115.29 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccC-CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G-~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+++.+|||+|||.++++++|+++|++|| .|.. |+|+.+ .+|||||+|.+.++|++||..|++..|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~--------v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE--------EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE--------EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4578999999999999999999999999 8887 667553 3689999999999999999999999999
Q ss_pred -CceEEEEecccC
Q 023286 82 -GNLIGVFIAESR 93 (284)
Q Consensus 82 -Gr~i~V~~a~~~ 93 (284)
|++|+|.+++++
T Consensus 185 ~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 185 ENHHLRVSFSKST 197 (198)
T ss_dssp SCCSCCEEEECCC
T ss_pred CCCeEEEEeeccc
Confidence 999999999864
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=6.2e-14 Score=118.39 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
..+.+|||+|||.++|+++|+++|++||.|..........|.- ..++.++|||||+|.++++|++|| .|++..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~---~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA---VQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEE---EEEETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEE---eEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 4578999999999999999999999995432210000000111 112456899999999999999999 799999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.....
T Consensus 78 ~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 78 QSLKIRRPHDYQP 90 (198)
T ss_dssp EEEEEECCCCCCC
T ss_pred ceEEEeCCCCCCC
Confidence 9999999876543
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=4.1e-13 Score=119.64 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-cee
Q 023286 2 TMANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN-KDF 80 (284)
Q Consensus 2 ~~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng-~~l 80 (284)
+.+..+|||+|||..+|+++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|.+||..|++ ..+
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEK--------AVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEE--------EEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 346789999999999999999999999999998 889988 4899999999999999999999999954 444
Q ss_pred c---CceEEEEecccCCC
Q 023286 81 H---GNLIGVFIAESRGK 95 (284)
Q Consensus 81 ~---Gr~i~V~~a~~~~~ 95 (284)
. +++|.|.++.+...
T Consensus 164 ~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp SSSSCCBCEEEECCCEES
T ss_pred ecCCCceEEEeeccccCc
Confidence 4 89999999986543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=6.9e-13 Score=115.82 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.3
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccC-CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFH 81 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G-~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~ 81 (284)
+++.+|||+|||.++++++|+++|++|| .|.. |+|+.+ .++||||+|.+.++|++||+.|++..|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG--------FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE--------EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE--------EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 3578999999999999999999999999 8887 666542 3689999999999999999999999999
Q ss_pred -CceEEEEecccC
Q 023286 82 -GNLIGVFIAESR 93 (284)
Q Consensus 82 -Gr~i~V~~a~~~ 93 (284)
++.|+|.+++++
T Consensus 216 ~g~~l~v~~a~~~ 228 (229)
T 2adc_A 216 ENHHLRVSFSKST 228 (229)
T ss_dssp SSCBCEEEECSSC
T ss_pred CCCeEEEEEecCC
Confidence 999999999864
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.40 E-value=5.8e-13 Score=119.74 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccC-CeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIG-LLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G-~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+..+|||+|||.++++++|+++|.+|| .|.. |+|+.++. +.++|||||+|.+.++|++||..|++..|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALS--------IRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE--------EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE--------EEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 578999999999999999999999999 9887 77888775 7899999999999999999999999999999
Q ss_pred ceEEEEecccCCC
Q 023286 83 NLIGVFIAESRGK 95 (284)
Q Consensus 83 r~i~V~~a~~~~~ 95 (284)
+.|.|.++.++..
T Consensus 187 ~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 187 YTLVTKVSNPLEK 199 (292)
T ss_dssp EECEEEECCCC--
T ss_pred cEEEEEECCCCcc
Confidence 9999999987654
No 199
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.39 E-value=1.2e-13 Score=84.83 Aligned_cols=30 Identities=53% Similarity=1.315 Sum_probs=28.8
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++|||+|+.|+++||++|+.|++|++||+.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCC
Confidence 679999999999999999999999999986
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.2e-12 Score=103.73 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCCcEEEeccCCC--C---CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCC----CCCcccEEEEEeCCHHHHHHHHH
Q 023286 3 MANGSVYVCNLPH--G---TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKT----TNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 3 ~~~~tIyV~nLp~--~---~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~----tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
+++.+|+|.||-. + -.++||++.|++||.|.. |+|++++. ++.++||+||+|.++++|++|++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~--------v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~ 89 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ 89 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE--------EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE--------EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH
Confidence 4788999999842 2 236899999999999998 88888865 46788999999999999999999
Q ss_pred HhCCceecCceEEEEeccc
Q 023286 74 WFNNKDFHGNLIGVFIAES 92 (284)
Q Consensus 74 ~lng~~l~Gr~i~V~~a~~ 92 (284)
.|||..|.|+.|.|.++..
T Consensus 90 ~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 90 ALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHTTCEETTEECEEEEECH
T ss_pred HHCCCEECCcEEEEEEcCh
Confidence 9999999999999999864
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.38 E-value=1.2e-12 Score=108.03 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCC-CCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRT-GRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~t-g~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
++.+|||+|||.++|+++|+++|++||.+...... +.+.+.+. ++.++|||||+|.++++|++|| .|++..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ----INQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE----EETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE----ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 57899999999999999999999999322110000 00001121 2345899999999999999999 799999999
Q ss_pred ceEEEEecccC
Q 023286 83 NLIGVFIAESR 93 (284)
Q Consensus 83 r~i~V~~a~~~ 93 (284)
++|.|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=2.4e-13 Score=105.28 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=62.7
Q ss_pred eccCCCCCCHHHHHHHH------------hccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 10 VCNLPHGTDEDMLAEYF------------GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 10 V~nLp~~~te~dL~~~F------------~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
+.+||..+++++|+++| ++||.|.. |.|++++. ++++|||||+|.++++|++|+..|||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCC
Confidence 45666677777777666 99999998 88888764 78999999999999999999999999
Q ss_pred ceecCceEEEEec
Q 023286 78 KDFHGNLIGVFIA 90 (284)
Q Consensus 78 ~~l~Gr~i~V~~a 90 (284)
..|.|++|+|+++
T Consensus 91 ~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 91 RWFNGQPIHAELS 103 (104)
T ss_dssp CEETTEECCEEEC
T ss_pred CEECCEEEEEEEc
Confidence 9999999999986
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=1.1e-12 Score=116.80 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=68.8
Q ss_pred CCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 4 ANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 4 ~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++++|||+|||.++|+++|+++|++||.|.. |.|.+ ++|||||+|.+.++|++||..|++..|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSE--------VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 4579999999999999999999999999987 66654 468999999999999999999999999999
Q ss_pred eEEEEeccc
Q 023286 84 LIGVFIAES 92 (284)
Q Consensus 84 ~i~V~~a~~ 92 (284)
.|.|.++.+
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 999999875
No 204
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.35 E-value=4.1e-13 Score=81.90 Aligned_cols=30 Identities=37% Similarity=0.695 Sum_probs=28.7
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++|||+|+.|+++||++|+.|++|++|||+
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 579999999999999999999999999986
No 205
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.33 E-value=8.4e-13 Score=86.68 Aligned_cols=36 Identities=39% Similarity=0.899 Sum_probs=32.7
Q ss_pred CCCCCCCCceecC--CCCCeeecccccCccCCCCCCCC
Q 023286 207 ATGLFGPNDWSCP--MCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 207 ~~~~~~~~dw~c~--~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
....+++|||+|+ .|+++||++|+.||+|++|||+.
T Consensus 6 ~~~~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 6 KNFRVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred ccCCCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 4556889999999 89999999999999999999874
No 206
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=4.1e-12 Score=118.12 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCCCcEEEecc--CCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 2 TMANGSVYVCN--LPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 2 ~~~~~tIyV~n--Lp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
..|+.+|||+| |+..+||++|+++|++||.|.. |.|.. +||||||+|.+.++|++||+.|||.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 46788999998 5789999999999999999987 54432 57899999999999999999999998
Q ss_pred ec---Cc--eEEEEecc
Q 023286 80 FH---GN--LIGVFIAE 91 (284)
Q Consensus 80 l~---Gr--~i~V~~a~ 91 (284)
+. |+ .|.|.+++
T Consensus 81 ~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 81 VVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EECTTSCEEECEEEECS
T ss_pred cccccCCceEEEEEEee
Confidence 84 44 57777774
No 207
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-11 Score=92.71 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=62.6
Q ss_pred CcEEEeccCC-------CCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 5 NGSVYVCNLP-------HGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 5 ~~tIyV~nLp-------~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
..+|-|.-.. .++++++|+++|++||.|.. |.|+ ++++|||||+|.+.++|+.||+.++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~- 75 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEV- 75 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-
Confidence 3455555433 46899999999999999988 6676 3688999999999999999999754
Q ss_pred ceecCceEEEEecccCCCC
Q 023286 78 KDFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 78 ~~l~Gr~i~V~~a~~~~~~ 96 (284)
.+.+++|+|++++++...
T Consensus 76 -~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 76 -GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp -BCSSSBCEEECSSCCCCC
T ss_pred -CCCCCeEEEEEccCCCCC
Confidence 467999999999877543
No 208
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=99.18 E-value=1.4e-11 Score=80.86 Aligned_cols=35 Identities=51% Similarity=1.224 Sum_probs=32.3
Q ss_pred ccCCCCCCCCCCccCCccccccccccccCCCCCCC
Q 023286 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (284)
Q Consensus 143 ~~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~ 177 (284)
..++|||+|+++.|+++||++|+.||+|++||+++
T Consensus 9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 45789999998899999999999999999999875
No 209
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=9.1e-11 Score=92.37 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCCcEEEeccCCCCCC----------HHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023286 3 MANGSVYVCNLPHGTD----------EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~t----------e~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai 72 (284)
.++..|.|.||=..-. ++||++.|++||.|.. |.|.++. ++||+||+|.+.++|++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--------v~i~~~~----~~G~~fV~f~~~e~A~~Ai 72 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--------IYVDKNS----AQGNVYVKCPSIAAAIAAV 72 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--------EEECTTC----TTCCEEEECSSHHHHHHHH
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--------EEEecCC----CcEEEEEEECCHHHHHHHH
Confidence 3677888888753222 2578999999999987 6675543 5899999999999999999
Q ss_pred HHhCCceecCceEEEEeccc
Q 023286 73 EWFNNKDFHGNLIGVFIAES 92 (284)
Q Consensus 73 ~~lng~~l~Gr~i~V~~a~~ 92 (284)
+.|||..|.|+.|.|+++..
T Consensus 73 ~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 73 NALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHTTCEETTEECEEEEECH
T ss_pred HHhCCCEECCEEEEEEEEcH
Confidence 99999999999999999864
No 210
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=86.85 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCCCCcEEEeccCCC----CCCH----HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023286 1 MTMANGSVYVCNLPH----GTDE----DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAV 72 (284)
Q Consensus 1 m~~~~~tIyV~nLp~----~~te----~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai 72 (284)
|-+|..||+|.-++. +.-. .+|.+.|.+||.|.. |+++.++ +||+|.+.++|.+||
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--------vr~~~d~--------~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--------IRFVEDK--------MWVTFLEGSSALNVL 66 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--------EEECSSS--------EEEEESSHHHHHHGG
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--------EEEecCC--------EEEEECChHHHHHHH
Confidence 457889999998772 3333 578899999999887 7788765 899999999999999
Q ss_pred HHhCCceecCceEEEEecccC
Q 023286 73 EWFNNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 73 ~~lng~~l~Gr~i~V~~a~~~ 93 (284)
+ ||+..+.|+.|+|+++.+.
T Consensus 67 ~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 67 S-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp G-GTTCEETTEEEEEEECCCS
T ss_pred h-cCCeEeCCeEEEEEeCCCC
Confidence 8 9999999999999999864
No 211
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=99.10 E-value=4.6e-11 Score=73.25 Aligned_cols=30 Identities=47% Similarity=0.991 Sum_probs=28.4
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~ 176 (284)
+.|||+|+ .|+++||++|..|++|++||+.
T Consensus 3 ~~gDW~C~--~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCK--TCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCS--SSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccC--CCCCccccccccccccCCcCCC
Confidence 78999999 9999999999999999999974
No 212
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=99.05 E-value=3.4e-11 Score=73.30 Aligned_cols=30 Identities=37% Similarity=0.755 Sum_probs=28.3
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~ 176 (284)
+.|||+|+ .|+++||++|..||+|++||++
T Consensus 2 k~gDW~C~--~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCN--KCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECT--TTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcC--cCcCCcChhcceecCCCCcCCC
Confidence 67999999 8999999999999999999985
No 213
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.7e-09 Score=85.89 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCCcEEEeccCCCC-CCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--Cc
Q 023286 3 MANGSVYVCNLPHG-TDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVEWFN--NK 78 (284)
Q Consensus 3 ~~~~tIyV~nLp~~-~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s-~e~A~~Ai~~ln--g~ 78 (284)
++...|||+||+.+ +++++|+++|++||.|.. |.+.++.. .|||.|.+ ..+|.+|+..|+ +.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 45678999999999 999999999999999998 77877765 59999999 899999999985 67
Q ss_pred eecCceEEEEecc
Q 023286 79 DFHGNLIGVFIAE 91 (284)
Q Consensus 79 ~l~Gr~i~V~~a~ 91 (284)
.|.+..+++++..
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 8889999998865
No 214
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.6e-09 Score=81.89 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCCCCcEEEeccCCCC------CCH---HHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 023286 1 MTMANGSVYVCNLPHG------TDE---DMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAA 71 (284)
Q Consensus 1 m~~~~~tIyV~nLp~~------~te---~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~A 71 (284)
|-+|..||+|.-++.. ..+ .+|.+.|.+||.|.. |+++.++ +||+|.+.++|.+|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~A 74 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSV 74 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHH
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHH
Confidence 4578899999988743 232 468899999998887 7888775 99999999999999
Q ss_pred HHHhCCceecCceEEEEeccc
Q 023286 72 VEWFNNKDFHGNLIGVFIAES 92 (284)
Q Consensus 72 i~~lng~~l~Gr~i~V~~a~~ 92 (284)
|+ |++.++.|+.|+|++..+
T Consensus 75 I~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 75 LD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HH-GGGSEETTEEEEEECCCC
T ss_pred Hh-cCCeeeCCeEEEEeccCC
Confidence 98 999999999999998653
No 215
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.4e-08 Score=86.43 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHhccCCeeecCCCCCCcEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceEEEEecc
Q 023286 16 GTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDK----TTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLIGVFIAE 91 (284)
Q Consensus 16 ~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk----~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 91 (284)
+-.+++|.+.|++||.|.. |.|+++. .++.++|++||+|.+.++|++||+.|||..+.|+.|.|.++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~--------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNR--------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEE--------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEE--------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3456789999999999998 7787554 455899999999999999999999999999999999999986
Q ss_pred c
Q 023286 92 S 92 (284)
Q Consensus 92 ~ 92 (284)
.
T Consensus 212 ~ 212 (222)
T 3dxb_A 212 Q 212 (222)
T ss_dssp H
T ss_pred H
Confidence 4
No 216
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=3.2e-05 Score=59.75 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=61.8
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhcc-----CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTI-----GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~-----G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
..+|-|-+||..++...|+.++..+ |.+.. |.+..|- +-|+|+|.+...|-+|.-.|+|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--------I~L~pDH------~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--------ILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--------EEEETTT------TEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--------EEEecCC------CceEEEEccchhhHHHHhhcCCee
Confidence 5688889999999999999999999 76655 5555554 369999999999999998899999
Q ss_pred ecCceEEEEec
Q 023286 80 FHGNLIGVFIA 90 (284)
Q Consensus 80 l~Gr~i~V~~a 90 (284)
|.+++|++--.
T Consensus 87 f~gr~Lr~gTv 97 (117)
T 2l9w_A 87 FQGKVIRSGTI 97 (117)
T ss_dssp ETTEEEEEECH
T ss_pred ecCeEEEecCH
Confidence 99999998653
No 217
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=98.00 E-value=2.8e-06 Score=64.77 Aligned_cols=93 Identities=23% Similarity=0.417 Sum_probs=26.7
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCCe
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPNDWSCPMCGNI 224 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~dw~c~~c~~~ 224 (284)
....|.|. .|-..|...-.+|..|..+|+.............. .......-...... +..-..+++.|.|..|.+.
T Consensus 6 ~~~~W~C~--~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~-s~~~~~~~~~~~gf-gd~fk~~~g~W~C~~C~~~ 81 (98)
T 3gj7_B 6 AGSSWQCD--TCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTP-SKSDKPASTSGTGF-GDKFKPAIGTWDCDTCLVQ 81 (98)
T ss_dssp ---------------------------------------------------------------------CCEECTTTCCE
T ss_pred CCCcccCC--ccccCChhhcccccccCCCCCCCcccccccCccCc-ccccccccccccch-hhccCCCCCcccCCcCcCC
Confidence 45689999 89999999999999999999854211100000000 00000000000000 0001235799999999999
Q ss_pred eecccccCccCCCCCCC
Q 023286 225 NWAKRTKCNICNTNKPG 241 (284)
Q Consensus 225 n~~~r~~c~~c~~~~~~ 241 (284)
|.+..+.|.-|.+|||.
T Consensus 82 N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 82 NKPEAVKCVACETPKPG 98 (98)
T ss_dssp ECTTCSBCTTTCCBCC-
T ss_pred ChhhcceecccCCCCCC
Confidence 99999999999999984
No 218
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=97.97 E-value=1e-06 Score=66.52 Aligned_cols=33 Identities=33% Similarity=0.841 Sum_probs=0.0
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPGHNE 244 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~~ 244 (284)
++|||.|+.|.++||+.++.|..|.+|||....
T Consensus 5 ~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~ 37 (92)
T 3gj8_B 5 SVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVS 37 (92)
T ss_dssp ---------------------------------
T ss_pred CCcCCCCCcCCCEeccccceecccCCCCCCCCC
Confidence 679999999999999999999999999997543
No 219
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=97.95 E-value=4.8e-06 Score=50.87 Aligned_cols=32 Identities=41% Similarity=0.890 Sum_probs=25.9
Q ss_pred CCCCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++.+|.|.|..|...|.+..+.|.-|.+|||.
T Consensus 2 ~~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 2 PLGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ----CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 46889999999999999999999999999986
No 220
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.91 E-value=6.9e-06 Score=49.86 Aligned_cols=32 Identities=38% Similarity=0.826 Sum_probs=26.7
Q ss_pred CCCCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++.++.|.|+.|-+.|.+..+.|.-|.+|||.
T Consensus 2 ~~~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 2 PLGSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp ----CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 35789999999999999999999999999984
No 221
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=5.4e-05 Score=49.56 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=31.0
Q ss_pred CCCCCceecCCCCCeeecccccCccCCCCCCCCC
Q 023286 210 LFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHN 243 (284)
Q Consensus 210 ~~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~ 243 (284)
...++.|.|..|-..|.+....|.-|.+|||...
T Consensus 6 ~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECCeeeccCccCCceecCcCCCCCCCc
Confidence 3467999999999999999999999999999864
No 222
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=6.9e-05 Score=49.12 Aligned_cols=34 Identities=35% Similarity=0.718 Sum_probs=31.2
Q ss_pred CCCCceecCCCCCeeecccccCccCCCCCCCCCC
Q 023286 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNE 244 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~~~ 244 (284)
..++.|.|..|...|.+....|..|.+|||....
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCCCcc
Confidence 4579999999999999999999999999999754
No 223
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.00084 Score=50.24 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=57.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceecCc
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNE--YKGDATVTYEDPHAALAAVEWFNNKDFHGN 83 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~--~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr 83 (284)
++|.|.+||+.+||+++.+.+.....+.. ...+.-+.+.+ .-.-|||.|.+.+++....+.++|+.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 47999999999999999999988765433 22333332222 234699999999999999999999988652
Q ss_pred -----eEEEEeccc
Q 023286 84 -----LIGVFIAES 92 (284)
Q Consensus 84 -----~i~V~~a~~ 92 (284)
+-.|++|..
T Consensus 74 kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 74 KGQEYPAIVEFAPF 87 (91)
T ss_dssp TCCEEECEEEECSS
T ss_pred CCCEeeeEEEEcCC
Confidence 335666643
No 224
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.001 Score=50.79 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=59.9
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhc---c--CCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGT---I--GLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNN 77 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~---~--G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng 77 (284)
+-..+|.|.|||+.+.++.|+-+|++ - |.|.. |+. .. .-|+|+|.+.+.|+..|+ -..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v~~--~~------~~AvItF~d~~va~rVL~-k~~ 68 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------WQR--LG------CGGVLTFREPADAERVLA-QAD 68 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------EEE--ET------TEEEEEESSHHHHHHHHT-CSC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------EEE--cC------CcEEEEEcChHHHHHHhc-CCc
Confidence 34578999999999999999999987 1 55655 333 22 469999999999999987 336
Q ss_pred ceecCceEEEEecccCCCC
Q 023286 78 KDFHGNLIGVFIAESRGKD 96 (284)
Q Consensus 78 ~~l~Gr~i~V~~a~~~~~~ 96 (284)
+.|++..|.|....++...
T Consensus 69 H~L~~~~LsV~P~~~~~~~ 87 (104)
T 2dhx_A 69 HELHGAQLSLRPAPPRAPA 87 (104)
T ss_dssp CBSSSSBCEEEECCCCCCC
T ss_pred ceecCeEEEEEcCCCCCcc
Confidence 7889999999886665443
No 225
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.35 E-value=0.00069 Score=51.17 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=46.2
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWF 75 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~l 75 (284)
.+.++| .+|.++...||.++|+.||.|. |+.+-|- -|||.|.+++.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345666 9999999999999999999665 6677664 6999999999999999866
No 226
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0011 Score=50.73 Aligned_cols=77 Identities=12% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCcEEEeccCCCCC-C----HHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 023286 4 ANGSVYVCNLPHGT-D----EDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNK 78 (284)
Q Consensus 4 ~~~tIyV~nLp~~~-t----e~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~ 78 (284)
-.++|+|.||+.++ . .+.++++|.+|+.+.. ....+.- .-..|.|.++++|.+|-..|++.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t--------F~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTT--------FQYFKSF------KRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE--------EEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc--------eeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence 45789999999755 2 2577899999998876 3333321 25799999999999999999999
Q ss_pred eecCceEEEEecccCC
Q 023286 79 DFHGNLIGVFIAESRG 94 (284)
Q Consensus 79 ~l~Gr~i~V~~a~~~~ 94 (284)
.++|+.|+|-++++..
T Consensus 70 ~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 70 EFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EETTEECEEECCCCSS
T ss_pred eecCceeEEEecCCCC
Confidence 9999999999998543
No 227
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.17 E-value=0.00051 Score=46.20 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=28.9
Q ss_pred CCCCceecCCCCCeeecccccCccCCCCCCCC
Q 023286 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
...+.|.|+.|-+.|......|-.|..||+..
T Consensus 7 ~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp SCCCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence 34578999999999999999999999999963
No 228
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.00079 Score=50.98 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=45.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
..++| .+|.++...||.++|+.||.|. |+.+-|- -|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999665 6677664 69999999999999999764
No 229
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.72 E-value=0.0033 Score=47.48 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceecC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTN--EYKGDATVTYEDPHAALAAVEWFNNKDFHG 82 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg--~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G 82 (284)
+-+|.|..||+.+||+++.+.+...=.+.. ...+.-+.+- ..-.-|||.|.+.+++....+.++++.|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--------FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE--------CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 457999999999999998877765433211 0011111111 122468999999999999999999998875
Q ss_pred -----ceEEEEecc
Q 023286 83 -----NLIGVFIAE 91 (284)
Q Consensus 83 -----r~i~V~~a~ 91 (284)
.+..|++|.
T Consensus 81 ~kg~~~~a~VE~AP 94 (97)
T 2l08_A 81 SKGLEYPAVVEFAP 94 (97)
T ss_dssp TTCCEEEEEEEECC
T ss_pred CCCCEeeeEEEecC
Confidence 244566664
No 230
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.0017 Score=44.19 Aligned_cols=31 Identities=35% Similarity=0.760 Sum_probs=28.9
Q ss_pred CCCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 211 FGPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
.+++.|.|..|...|-+....|.-|.+|||.
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 4579999999999999999999999999984
No 231
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=96.39 E-value=0.0031 Score=38.19 Aligned_cols=28 Identities=21% Similarity=0.725 Sum_probs=26.0
Q ss_pred CCceecCCCCCeeecccccCccCCCCCC
Q 023286 213 PNDWSCPMCGNINWAKRTKCNICNTNKP 240 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~ 240 (284)
...|.|+.|-++|......|-.|..+|+
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 3589999999999999999999999986
No 232
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.32 E-value=0.0068 Score=48.18 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=56.7
Q ss_pred CCCcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcE--EEe---ecCCCC-CcccEEEEEeCCHHHHHHHHHHhC
Q 023286 3 MANGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKV--WLY---RDKTTN-EYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 3 ~~~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V--~i~---~dk~tg-~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
...+.|.|-+.|++.+ ..|.+.|++||.|..+-..-.+.. .+. ..+.-. ....+..|+|.++.+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 3456788889987765 556678999999977310000000 000 000000 124588999999999999997 89
Q ss_pred CceecCceEEEEeccc
Q 023286 77 NKDFHGNLIGVFIAES 92 (284)
Q Consensus 77 g~~l~Gr~i~V~~a~~ 92 (284)
|..|.|..|-|.+..+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999999888887653
No 233
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=96.31 E-value=0.0025 Score=37.78 Aligned_cols=26 Identities=23% Similarity=0.759 Sum_probs=24.6
Q ss_pred CceecCCCCCeeecccccCccCCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNTNK 239 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~ 239 (284)
..|.|+.|-++|......|..|..|+
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 48999999999999999999999987
No 234
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.0026 Score=41.48 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCCccCCccccccccccccCCCCCCCC
Q 023286 143 WQQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGG 178 (284)
Q Consensus 143 ~~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~ 178 (284)
....|.|.|. .|...|.+...+|+.|..|++...
T Consensus 6 ~~~~g~W~C~--~C~v~N~a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 6 SGVIGTWDCD--TCLVQNKPEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCCSSSEECS--SSCCEECSSCSBCSSSCCBCSCSS
T ss_pred CCCCCceECC--eeeccCccCCceecCcCCCCCCCc
Confidence 4467999999 999999999999999999998653
No 235
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.0054 Score=40.04 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=30.3
Q ss_pred cCCCCCCCCCCccCCccccccccccccCCCCCCCCC
Q 023286 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVGGP 179 (284)
Q Consensus 144 ~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~~~ 179 (284)
...|.|.|. .|...|.+...+|+.|..|++....
T Consensus 7 ~~~gsW~C~--~C~v~N~a~~~kC~aC~~pkpg~~p 40 (47)
T 2ebr_A 7 GPEGSWDCE--LCLVQNKADSTKCLACESAKPGTKS 40 (47)
T ss_dssp SCCSSCCCS--SSCCCCCSSCSBCSSSCCBCCCCCS
T ss_pred CCCCeeECC--eeecCCcCCcceecCcCCCCCCCcc
Confidence 356899999 9999999999999999999997643
No 236
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.025 Score=44.21 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=54.4
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecC-c
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHG-N 83 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~G-r 83 (284)
..-|.|-+.|+.. .+.|..+|++||.|.. ... . ....+-.|.|.+..+|++||. .|+..|.+ .
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~--------~~~--~----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILK--------HVM--S----NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEE--------EEE--C----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEE--------ecc--C----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 4567888999885 5677889999999976 222 1 123599999999999999997 79998875 6
Q ss_pred eEEEEec
Q 023286 84 LIGVFIA 90 (284)
Q Consensus 84 ~i~V~~a 90 (284)
.|-|...
T Consensus 88 mIGV~p~ 94 (119)
T 1wwh_A 88 MIGVKPC 94 (119)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 6777764
No 237
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.00 E-value=0.0023 Score=38.90 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=25.5
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPV 176 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~ 176 (284)
++|.|.|. .|...|.+...+|..|..+||.
T Consensus 4 ~~G~W~C~--~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 4 GSGSWDCE--VCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp --CCEECT--TTCCEECSSCSBCTTTCCBC--
T ss_pred CCCceECC--eeEeECccccCEEcccCCcCCC
Confidence 67999999 9999999999999999999983
No 238
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=96.00 E-value=0.0039 Score=40.13 Aligned_cols=29 Identities=24% Similarity=0.675 Sum_probs=26.4
Q ss_pred CCceecCCCCCeeecccccCccCCCCCCC
Q 023286 213 PNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
++.|+|+.|...|......|++|-+-|.+
T Consensus 11 ~D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 11 ADYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GGCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred cceEecccccccCCCccchhhHHHhhccc
Confidence 37899999999999999999999987764
No 239
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=95.90 E-value=0.0069 Score=40.40 Aligned_cols=29 Identities=34% Similarity=0.878 Sum_probs=27.3
Q ss_pred CceecCCCCCeeecccccCccCCCCCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
..|.|+.|-++|-.....|-.|..+++..
T Consensus 9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 48999999999999999999999999874
No 240
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=95.76 E-value=0.0035 Score=37.81 Aligned_cols=29 Identities=31% Similarity=0.679 Sum_probs=26.2
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
..|.|.|+ .|-..|.+...+|..|..|||
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCCCCC
Confidence 57899999 999999999999999999997
No 241
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.53 E-value=0.01 Score=47.66 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=29.7
Q ss_pred EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 023286 43 VWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKD 79 (284)
Q Consensus 43 V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~ 79 (284)
++|+.+.. +++||+||+|.+.++|++||+.+++..
T Consensus 3 ~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 3 YKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 66788774 689999999999999999998877543
No 242
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=95.40 E-value=0.0095 Score=41.39 Aligned_cols=29 Identities=34% Similarity=0.883 Sum_probs=27.4
Q ss_pred CceecCCCCCeeecccccCccCCCCCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNTNKPGH 242 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~~~~~ 242 (284)
..|.|+.|-++|-.....|-.|..+++..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence 58999999999999999999999999874
No 243
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.19 E-value=0.012 Score=56.44 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=39.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023286 6 GSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVE 73 (284)
Q Consensus 6 ~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~ 73 (284)
.+|+|. .|..+++.+|.++|++||.|.. +.++.++ + -||.|+|.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 579997 7999999999999999999988 4454433 3 599999999999987764
No 244
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.40 E-value=0.028 Score=37.54 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~ 177 (284)
..+.|.|+ .|.+.|......|..|..||+..
T Consensus 8 ~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~~s 38 (53)
T 2d9g_A 8 DEGYWDCS--VCTFRNSAEAFKCMMCDVRKGTS 38 (53)
T ss_dssp CCCCEECS--SSCCEECSSCSSCSSSCCCCCCC
T ss_pred CCCCcCCC--CCccCCCCCCCccCCCCCcCCcc
Confidence 45789999 99999999999999999999853
No 245
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.94 E-value=0.02 Score=45.69 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceecCceEEEEecccC
Q 023286 52 NEYKGDATVTYEDPHAALAAVEWF-NNKDFHGNLIGVFIAESR 93 (284)
Q Consensus 52 g~~rGfaFV~F~s~e~A~~Ai~~l-ng~~l~Gr~i~V~~a~~~ 93 (284)
.+.+|+++|+|.+.++|++||+.| |+..|+| .|.|.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467899999999999999999999 9999999 9999988653
No 246
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.82 E-value=0.081 Score=35.80 Aligned_cols=30 Identities=30% Similarity=0.696 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 144 ~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
+..|.|.|. .|-..|-+...+|.-|..|+|
T Consensus 27 ~~~GsWeC~--~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 27 RPIGSWECS--VCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CCSSSCCCS--SSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCCeeeCC--eeEccCccCCceeeEcCCcCC
Confidence 356999999 999999999999999999997
No 247
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=91.72 E-value=0.08 Score=31.09 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=24.7
Q ss_pred CCCCCCCCCccCCccccccccccccCCCC
Q 023286 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTAR 174 (284)
Q Consensus 146 ~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r 174 (284)
...|.|+ .|.+.|-.....|..|..++
T Consensus 4 ~~~W~C~--~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 4 SAMWACQ--HCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp SCCEECS--SSCCEECSSCSSCSSSCCCC
T ss_pred CccccCC--cccccCCCCCCccCCcCCCC
Confidence 3489999 89999999999999999887
No 248
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=91.69 E-value=0.059 Score=34.64 Aligned_cols=28 Identities=36% Similarity=0.826 Sum_probs=25.4
Q ss_pred CCCCCCCCCccCCccccccccccccCCCCC
Q 023286 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 146 ~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
...|.|. +|...|+.....|++|-+-|.
T Consensus 11 ~D~WkC~--~C~~~N~Pl~r~C~rCw~LRk 38 (46)
T 2c6a_A 11 ADYWKCT--SCNEMNPPLPSHCNRCWALRE 38 (46)
T ss_dssp GGCEECT--TTCCEECSSCSSCTTTCCCCS
T ss_pred cceEecc--cccccCCCccchhhHHHhhcc
Confidence 4789999 999999999999999988765
No 249
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=91.41 E-value=0.096 Score=31.42 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=25.6
Q ss_pred CCCCCCCCCccCCccccccccccccCCCCC
Q 023286 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 146 ~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
...|.|+ .|-+.|-.....|..|..+|+
T Consensus 6 ~~~W~C~--~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCT--ACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECT--TTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCC--CCccccCCCCCeeCCCCCcCc
Confidence 3589999 899999999999999999986
No 250
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=91.10 E-value=0.24 Score=32.86 Aligned_cols=29 Identities=38% Similarity=0.853 Sum_probs=26.8
Q ss_pred CCCCCCCCccCCccccccccccccCCCCCCC
Q 023286 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (284)
Q Consensus 147 GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~ 177 (284)
..|.|+ .|-+.|-.....|..|..+++..
T Consensus 9 ~~W~Cp--~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 9 VGWQCP--GCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSBCCT--TTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCccCC--CcccccCCCCCeeCCCCCcCCcc
Confidence 489999 89999999999999999999865
No 251
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=90.74 E-value=0.36 Score=31.64 Aligned_cols=30 Identities=20% Similarity=0.623 Sum_probs=26.7
Q ss_pred CCCceecCCCCCeeecccccCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
.++-|.|+.|...|-.-...|++|-+-|.+
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcc
Confidence 357899999999999999999999887764
No 252
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=89.41 E-value=0.13 Score=35.61 Aligned_cols=29 Identities=38% Similarity=0.834 Sum_probs=26.7
Q ss_pred CCCCCCCCccCCccccccccccccCCCCCCC
Q 023286 147 GDWMCPNTSCSNVNFAFRGVCNRCGTARPVG 177 (284)
Q Consensus 147 GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~~~ 177 (284)
-.|.|+ .|-+.|......|..|..+++..
T Consensus 7 ~~W~CP--~CTf~N~p~~p~CEmC~~prp~~ 35 (64)
T 3b08_B 7 VGWQCP--GCTFINKPTRPGCEMCCRARPET 35 (64)
T ss_dssp CSEECT--TTCCEECTTCSBCTTTCCBCCSS
T ss_pred CCCcCC--CccccCCCCCCccCcCCCCCCcc
Confidence 489999 89999999999999999999865
No 253
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=88.92 E-value=0.078 Score=51.88 Aligned_cols=84 Identities=20% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccCCcccc---------ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 023286 145 QDGDWMCPNTSCSNVNFA---------FRGVCNRCGTARPVGGPGAGGRAGGRGRGRAGNESGSQGRQIGAATGLFGPND 215 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~---------~R~~C~rC~~~r~~~~~~~~~~~gg~~~g~~~~~~~~~~~~~~~~~~~~~~~d 215 (284)
..-.|.|+ -|.+.|-. ....|--|+++.+....-..... ..... +.+ ....+.. ...+
T Consensus 114 ~~~tWvC~--ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~---~~~~~-~~~-----~~~~~~~--~~~~ 180 (566)
T 1w7p_D 114 VVSTWVCP--ICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINC---SNAID-PNA-----NPQNQFG--VNSE 180 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceecc--ccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhc---cccCC-Ccc-----cCccccc--cccC
Confidence 45799999 99999874 34569999999875431110000 00000 000 0001111 1246
Q ss_pred eecCCCCCeeecccccCccCCCCCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
-.||.|-++|-..-..|-.|+++-+.
T Consensus 181 ~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 181 NICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp --------------------------
T ss_pred CCCCcccccCChhhhcccccCCcCCC
Confidence 78999999999999999999999876
No 254
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.61 E-value=1 Score=43.49 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=44.3
Q ss_pred CcEEEeccCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023286 5 NGSVYVCNLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFN 76 (284)
Q Consensus 5 ~~tIyV~nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~ln 76 (284)
+..++|+ +|..+...+|.+.|+.||.+. |+.+.+. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 999999999999999999654 5444432 69999999999999999875
No 255
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=88.07 E-value=0.18 Score=37.97 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 144 ~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
...|.|.|. .|-..|.+...+|..|..|||
T Consensus 68 ~~~g~W~C~--~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 68 PAIGTWDCD--TCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp ---CCEECT--TTCCEECTTCSBCTTTCCBCC
T ss_pred CCCCcccCC--cCcCCChhhcceecccCCCCC
Confidence 357999999 999999999999999999997
No 256
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=80.13 E-value=1.4 Score=28.90 Aligned_cols=29 Identities=28% Similarity=0.763 Sum_probs=25.9
Q ss_pred CCCCCCCCCCccCCccccccccccccCCCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTARP 175 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~r~ 175 (284)
.+.-|.|. +|...|-.-...|++|-+-|.
T Consensus 8 ~eD~WkC~--~C~k~N~Pl~ryC~rCwaLRk 36 (53)
T 2cr8_A 8 SEDEWQCT--ECKKFNSPSKRYCFRCWALRK 36 (53)
T ss_dssp CSCCEECS--SSCCEECSSCCBCTTTCCBCC
T ss_pred Ccceeecc--cccccCCCccchhHHHHHhhc
Confidence 56789999 999999999999999988775
No 257
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.96 E-value=1.3 Score=29.15 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=22.5
Q ss_pred CceecCCCCCeeecccccCccCCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNTN 238 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~~ 238 (284)
...+|+.|+..|-..-..|-+|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 5789999999999999999999865
No 258
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=76.84 E-value=0.84 Score=29.36 Aligned_cols=12 Identities=58% Similarity=1.763 Sum_probs=10.5
Q ss_pred CCceecCCCCCe
Q 023286 213 PNDWSCPMCGNI 224 (284)
Q Consensus 213 ~~dw~c~~c~~~ 224 (284)
+.||.||.|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 689999999975
No 259
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.76 E-value=7.9 Score=26.70 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=43.1
Q ss_pred EEEec-cCCCCCCHHHHHHHHhccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecCceE
Q 023286 7 SVYVC-NLPHGTDEDMLAEYFGTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYEDPHAALAAVEWFNNKDFHGNLI 85 (284)
Q Consensus 7 tIyV~-nLp~~~te~dL~~~F~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s~e~A~~Ai~~lng~~l~Gr~i 85 (284)
+|||. +--..++..+|..++..-+.+.... |--+.-. -.|.||+... +.|..+++.|+...+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~------IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADD------IGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGG------EEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhh------ccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceE
Confidence 45553 2235667788888888665554432 3222211 1378999876 45778888899999999999
Q ss_pred EEEecc
Q 023286 86 GVFIAE 91 (284)
Q Consensus 86 ~V~~a~ 91 (284)
.|+.++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 998775
No 260
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=75.33 E-value=0.96 Score=30.11 Aligned_cols=12 Identities=58% Similarity=1.691 Sum_probs=10.7
Q ss_pred CCceecCCCCCe
Q 023286 213 PNDWSCPMCGNI 224 (284)
Q Consensus 213 ~~dw~c~~c~~~ 224 (284)
+.||.||.|++.
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 689999999975
No 261
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=71.36 E-value=2.1 Score=35.12 Aligned_cols=28 Identities=25% Similarity=0.698 Sum_probs=21.4
Q ss_pred CCceecCCCCCeeec-ccccCccCCCCCC
Q 023286 213 PNDWSCPMCGNINWA-KRTKCNICNTNKP 240 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~-~r~~c~~c~~~~~ 240 (284)
.--|+|+.|+++-.. --..|..|+.|+.
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCCHH
Confidence 357999999998552 2248999999874
No 262
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=70.45 E-value=3 Score=29.59 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=20.4
Q ss_pred CCCceecCCCCCeeecc---------cccCccCCCCCC
Q 023286 212 GPNDWSCPMCGNINWAK---------RTKCNICNTNKP 240 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~~---------r~~c~~c~~~~~ 240 (284)
.-.+|+|+.|.+.|-.. .-.|.-|+.+.+
T Consensus 14 ~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 14 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp -CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred cccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 34799999999776543 345777887655
No 263
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=69.54 E-value=1.5 Score=28.83 Aligned_cols=13 Identities=54% Similarity=1.589 Sum_probs=10.9
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 3789999999864
No 264
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=69.53 E-value=1.6 Score=28.76 Aligned_cols=13 Identities=54% Similarity=1.546 Sum_probs=10.9
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 3689999999974
No 265
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=68.96 E-value=1.6 Score=29.12 Aligned_cols=13 Identities=54% Similarity=1.234 Sum_probs=10.9
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 3689999999974
No 266
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=67.55 E-value=3 Score=27.88 Aligned_cols=24 Identities=33% Similarity=0.725 Sum_probs=22.6
Q ss_pred CceecCCCCCeeecccccCccCCC
Q 023286 214 NDWSCPMCGNINWAKRTKCNICNT 237 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~r~~c~~c~~ 237 (284)
.-++|-.|.+-|-.+-+.|-+|+.
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred chhhhccccCcCCcccccccCCCC
Confidence 679999999999999999999985
No 267
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=67.13 E-value=1.9 Score=30.27 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=11.5
Q ss_pred CCCceecCCCCCee
Q 023286 212 GPNDWSCPMCGNIN 225 (284)
Q Consensus 212 ~~~dw~c~~c~~~n 225 (284)
-+.||.||.|+..-
T Consensus 37 lPddw~CP~Cga~K 50 (70)
T 1dx8_A 37 LSDSFMCPACRSPK 50 (70)
T ss_dssp SCTTCBCTTTCCBG
T ss_pred CCCCCcCCCCCCCH
Confidence 36899999999753
No 268
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=64.92 E-value=2.1 Score=30.93 Aligned_cols=13 Identities=62% Similarity=1.523 Sum_probs=10.9
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 57 lPddW~CPvCga~ 69 (81)
T 2kn9_A 57 IPDDWSCPDCGAA 69 (81)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 3689999999974
No 269
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=64.39 E-value=3.3 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=20.5
Q ss_pred ceecCCCCCeeec--ccccCccCCCCCC
Q 023286 215 DWSCPMCGNINWA--KRTKCNICNTNKP 240 (284)
Q Consensus 215 dw~c~~c~~~n~~--~r~~c~~c~~~~~ 240 (284)
-|.|+.|+++-.. --..|..|+.||.
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCCHH
Confidence 6999999999432 2348999999875
No 270
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=62.96 E-value=2.3 Score=28.28 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=19.9
Q ss_pred CCCceecCCCCCeee----cccccCccCCCC
Q 023286 212 GPNDWSCPMCGNINW----AKRTKCNICNTN 238 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~----~~r~~c~~c~~~ 238 (284)
..--+.||.|++.-| ..|..|.+|+..
T Consensus 15 ~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 15 VRKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EEccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 334688999998555 458899999754
No 271
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=61.28 E-value=4.4 Score=34.15 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=20.9
Q ss_pred CceecCCCCCeeecc-cccCccCCCCCC
Q 023286 214 NDWSCPMCGNINWAK-RTKCNICNTNKP 240 (284)
Q Consensus 214 ~dw~c~~c~~~n~~~-r~~c~~c~~~~~ 240 (284)
.-|.|+.|+++-... -..|..|+.||.
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCChH
Confidence 479999999985432 258999999874
No 272
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=60.20 E-value=2.8 Score=30.62 Aligned_cols=13 Identities=54% Similarity=1.474 Sum_probs=10.8
Q ss_pred CCCceecCCCCCe
Q 023286 212 GPNDWSCPMCGNI 224 (284)
Q Consensus 212 ~~~dw~c~~c~~~ 224 (284)
-+.||.||.|+..
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 3689999999964
No 273
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=58.98 E-value=2 Score=39.46 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCCCCCccC
Q 023286 139 VGKTWQQDGDWMCPNTSCS 157 (284)
Q Consensus 139 ~gg~~~r~GDW~C~~~~Cg 157 (284)
++.......+|-|. .|.
T Consensus 305 ~~~~~~~~~~~~~~--~~~ 321 (358)
T 2pk2_A 305 PGQNTGGQEARPNY--HCQ 321 (358)
T ss_dssp -------------------
T ss_pred CCccCCCCCCccce--ecH
Confidence 34455567788777 553
No 274
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.02 E-value=7.4 Score=25.21 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=17.8
Q ss_pred CCCceecCCCCCeeec----ccccCccCCC
Q 023286 212 GPNDWSCPMCGNINWA----KRTKCNICNT 237 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~~----~r~~c~~c~~ 237 (284)
..--..||.|+...|- .|..|.+|+.
T Consensus 16 ~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp ECSSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred EEecccCCCCCCceEEecCCCeEECCCCCC
Confidence 3346789999873333 4888888874
No 275
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.64 E-value=13 Score=24.76 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=11.2
Q ss_pred CCCceecCCCCCee
Q 023286 212 GPNDWSCPMCGNIN 225 (284)
Q Consensus 212 ~~~dw~c~~c~~~n 225 (284)
..|+++|..|+.+-
T Consensus 27 ~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 27 RAGDMICPECGLVV 40 (58)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCeEEeCCCCCEE
Confidence 34799999999874
No 276
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=47.95 E-value=3.8 Score=37.52 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCceecCCCC
Q 023286 211 FGPNDWSCPMCG 222 (284)
Q Consensus 211 ~~~~dw~c~~c~ 222 (284)
-.+.+|.|-+|-
T Consensus 310 ~~~~~~~~~~~~ 321 (358)
T 2pk2_A 310 GGQEARPNYHCQ 321 (358)
T ss_dssp ------------
T ss_pred CCCCCccceecH
Confidence 457899887773
No 277
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=46.65 E-value=15 Score=27.94 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.2
Q ss_pred eecCCCCCee------ecccccCccCCCCCCC
Q 023286 216 WSCPMCGNIN------WAKRTKCNICNTNKPG 241 (284)
Q Consensus 216 w~c~~c~~~n------~~~r~~c~~c~~~~~~ 241 (284)
-.|+.|+..| ......|-+|+++-+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFD 37 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTC
T ss_pred EECcccccccCCCCcccccCCcchhcCCcccc
Confidence 4699999999 6667789999887765
No 278
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=46.12 E-value=5.8 Score=23.06 Aligned_cols=12 Identities=42% Similarity=1.304 Sum_probs=9.6
Q ss_pred ccCCCCCCCCCCcc
Q 023286 143 WQQDGDWMCPNTSC 156 (284)
Q Consensus 143 ~~r~GDW~C~~~~C 156 (284)
.++.|||-|- +|
T Consensus 13 npregdwcch--kc 24 (36)
T 4b2u_A 13 NPREGDWCCH--KC 24 (36)
T ss_dssp CGGGCCSSSS--EE
T ss_pred CCCccCeeee--cc
Confidence 4588999997 66
No 279
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=42.57 E-value=25 Score=27.28 Aligned_cols=41 Identities=27% Similarity=0.533 Sum_probs=27.9
Q ss_pred ceecCCCCCeeeccc------ccCccCCCCCCCCCCCCCCCCCCCCcCcCChHHHHHH
Q 023286 215 DWSCPMCGNINWAKR------TKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEET 266 (284)
Q Consensus 215 dw~c~~c~~~n~~~r------~~c~~c~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~ 266 (284)
.|.|++|..+|-... ..|-+|..|-.. +-..++++++++++
T Consensus 14 ~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~~~-----------~~~~~l~~~~f~~~ 60 (155)
T 2ppt_A 14 RLTCLACGQANKVPSDRLAAGPKCGICGAGLIT-----------GKVAGIDPAILARA 60 (155)
T ss_dssp EEECTTTCCEEEEEGGGTTSCCBCTTTCCBSCC-----------SSEEECCHHHHHHH
T ss_pred eEECccccccccCCcccccCCCCCCcCCccccC-----------CCCccCCHHHHHHH
Confidence 499999999997643 356667665532 33566777777765
No 280
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.51 E-value=51 Score=26.98 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.5
Q ss_pred EEEeccCCC-C--------CCHHHHHHHH--hccCCeeecCCCCCCcEEEeecCCCCCcccEEEEEeCC-HHHHHHHHH
Q 023286 7 SVYVCNLPH-G--------TDEDMLAEYF--GTIGLLKKDKRTGRPKVWLYRDKTTNEYKGDATVTYED-PHAALAAVE 73 (284)
Q Consensus 7 tIyV~nLp~-~--------~te~dL~~~F--~~~G~v~~~~~tg~p~V~i~~dk~tg~~rGfaFV~F~s-~e~A~~Ai~ 73 (284)
+++|-|+|. . .+..+|++.| ..|..+. |+.+.++. -..|++.|.|.+ -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 577889886 2 3347899977 8998876 44555553 377899999985 344445554
No 281
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.99 E-value=38 Score=23.47 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=16.9
Q ss_pred CCCCCCCCCccCCcc----------ccccccccccCC
Q 023286 146 DGDWMCPNTSCSNVN----------FAFRGVCNRCGT 172 (284)
Q Consensus 146 ~GDW~C~~~~Cg~~N----------F~~R~~C~rC~~ 172 (284)
.+...|. .|+... -.|...||+|..
T Consensus 13 ~~~~~C~--~C~~~I~~~e~v~a~~~~wH~~CF~C~~ 47 (82)
T 2co8_A 13 GAGDLCA--LCGEHLYVLERLCVNGHFFHRSCFRCHT 47 (82)
T ss_dssp CSSCBCS--SSCCBCCTTTBCCBTTBCCBTTTCBCSS
T ss_pred CCCCCCc--ccCCCcccceEEEECCCeeCCCcCEEcC
Confidence 4567787 676544 357888999864
No 282
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=34.66 E-value=16 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=16.4
Q ss_pred CCceecCCCCCeee--------cccccCccCCCCCCC
Q 023286 213 PNDWSCPMCGNINW--------AKRTKCNICNTNKPG 241 (284)
Q Consensus 213 ~~dw~c~~c~~~n~--------~~r~~c~~c~~~~~~ 241 (284)
+..|.|-.|+...- .....|+.|+..-.-
T Consensus 22 p~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~ 58 (83)
T 3nyb_B 22 PSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHF 58 (83)
T ss_dssp GGGTCCCCBC-------------CCCBCSSSSCBSSC
T ss_pred CCcccccccccCCcccccccCCCCCCeecccCCCCcC
Confidence 45677777764321 234789999876543
No 283
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.20 E-value=25 Score=26.61 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCCceecCCCCCeee--cccc-cCccCCCCCCC
Q 023286 212 GPNDWSCPMCGNINW--AKRT-KCNICNTNKPG 241 (284)
Q Consensus 212 ~~~dw~c~~c~~~n~--~~r~-~c~~c~~~~~~ 241 (284)
.+..|.|..|++.-- .... .|-.|+.+.-.
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNVI 102 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCCE
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCcE
Confidence 378999999997632 2345 89999988643
No 284
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.87 E-value=26 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=17.4
Q ss_pred CCCCCCCCCCccCCccccccccccccCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~ 173 (284)
...|+.|. .|+... .-..|..|...
T Consensus 5 ~~~~~~C~--vC~~~g--~ll~CD~C~~~ 29 (66)
T 1xwh_A 5 QKNEDECA--VCRDGG--ELICCDGCPRA 29 (66)
T ss_dssp CSCCCSBS--SSSCCS--SCEECSSCCCE
T ss_pred CCCCCCCc--cCCCCC--CEEEcCCCChh
Confidence 56799998 787643 45668777644
No 285
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=33.03 E-value=18 Score=28.60 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=21.9
Q ss_pred ecCCCCCeeecccccCccCCCCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
.|..|+.+-|--|..|..|+....+
T Consensus 49 rC~~CG~~~~PPr~~Cp~C~s~~~~ 73 (145)
T 3irb_A 49 KCSKCGRIFVPARSYCEHCFVKIEN 73 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEECCE
T ss_pred EeCCCCcEEcCchhhCcCCCCCcee
Confidence 5999999999999999999876543
No 286
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=32.97 E-value=13 Score=21.01 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.7
Q ss_pred CCCCCceecCCCC
Q 023286 210 LFGPNDWSCPMCG 222 (284)
Q Consensus 210 ~~~~~dw~c~~c~ 222 (284)
+-+-|||.|-.|-
T Consensus 13 pekmgdwccgrci 25 (32)
T 4b2v_A 13 PEKMGDWCCGRCI 25 (32)
T ss_dssp TTTTCCCCSSEEE
T ss_pred hHHhcchhhhHHH
Confidence 3467999998773
No 287
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=31.30 E-value=31 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCceecCCCCCeeec-------------c----------cccCccCCCCCCC
Q 023286 213 PNDWSCPMCGNINWA-------------K----------RTKCNICNTNKPG 241 (284)
Q Consensus 213 ~~dw~c~~c~~~n~~-------------~----------r~~c~~c~~~~~~ 241 (284)
+.-|.|..|++.--. . ...|-.|+.+.-.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 679999999987332 1 4669999987654
No 288
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=29.40 E-value=15 Score=30.08 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=12.9
Q ss_pred CCCCCCCCCCcCcCCh
Q 023286 245 GGVRGGRGGGYKELDE 260 (284)
Q Consensus 245 ~~~~~g~~gg~~~~~~ 260 (284)
.|.|-|+||||.||--
T Consensus 129 ~G~RLG~GgGyYDR~L 144 (187)
T 1ydm_A 129 NGFRVGFGGGYYDRYL 144 (187)
T ss_dssp TSCEECCSCCSTTTGG
T ss_pred CCCcccCCccHHHHHH
Confidence 3588999999998843
No 289
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=29.14 E-value=23 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.705 Sum_probs=20.9
Q ss_pred ecCCCCCeeecccccCccCCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTNK 239 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~ 239 (284)
.|..|+.+-|--|..|..|....
T Consensus 49 rC~~CG~~~fPPr~~Cp~C~s~~ 71 (145)
T 2gnr_A 49 KCSKCGRIFVPARSYCEHCFVKI 71 (145)
T ss_dssp ECTTTCCEEESCCSEETTTTEEC
T ss_pred EECCCCcEEeCCCCCCCCCCCCc
Confidence 69999999999999999998764
No 290
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.16 E-value=33 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=19.0
Q ss_pred eecCCCCCeeecccccCccCCCCCCC
Q 023286 216 WSCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 216 w~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
-.|+.|+.--. ...|-.|+.+-..
T Consensus 7 r~C~~CgvYTL--k~~CP~CG~~T~~ 30 (60)
T 2apo_B 7 KKCPKCGLYTL--KEICPKCGEKTVI 30 (60)
T ss_dssp EECTTTCCEES--SSBCSSSCSBCBC
T ss_pred eeCCCCCCEec--cccCcCCCCcCCC
Confidence 37999987766 7889999987544
No 291
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.05 E-value=1.3e+02 Score=19.59 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=15.3
Q ss_pred CCCCCCCCCccCCccccccccccccCCC
Q 023286 146 DGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (284)
Q Consensus 146 ~GDW~C~~~~Cg~~NF~~R~~C~rC~~~ 173 (284)
..++.|. .|+..+ .-..|..|...
T Consensus 7 ~~~~~C~--vC~~~g--~ll~Cd~C~~~ 30 (61)
T 1mm2_A 7 HHMEFCR--VCKDGG--ELLCCDTCPSS 30 (61)
T ss_dssp SSCSSCT--TTCCCS--SCBCCSSSCCC
T ss_pred CCCCcCC--CCCCCC--CEEEcCCCCHH
Confidence 4577887 787533 45667777644
No 292
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=25.77 E-value=26 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=20.2
Q ss_pred ceecCCCCCeee-----cccccCccCCCCCC
Q 023286 215 DWSCPMCGNINW-----AKRTKCNICNTNKP 240 (284)
Q Consensus 215 dw~c~~c~~~n~-----~~r~~c~~c~~~~~ 240 (284)
|..|+.|.+..- +..+.|..|++.-.
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEe
Confidence 789999997654 34678999998653
No 293
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=24.94 E-value=21 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=13.3
Q ss_pred CCceecCCC--CCeeecccccCccCC
Q 023286 213 PNDWSCPMC--GNINWAKRTKCNICN 236 (284)
Q Consensus 213 ~~dw~c~~c--~~~n~~~r~~c~~c~ 236 (284)
.|+|.|+.| ..-.-.....|..|-
T Consensus 51 ~g~W~Cp~c~C~~C~k~~~~~C~~Cp 76 (107)
T 4gne_A 51 YGKWECPWHQCDECSSAAVSFCEFCP 76 (107)
T ss_dssp SSCCCCGGGBCTTTCSBCCEECSSSS
T ss_pred CCCEECCCCCCCcCCCCCCcCcCCCC
Confidence 479999944 222222335566664
No 294
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=24.72 E-value=16 Score=30.22 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=12.3
Q ss_pred CCCCCCCCCCcCcCC
Q 023286 245 GGVRGGRGGGYKELD 259 (284)
Q Consensus 245 ~~~~~g~~gg~~~~~ 259 (284)
.|.|-||||||.||-
T Consensus 125 ~G~RLG~GgGyYDR~ 139 (194)
T 1sou_A 125 EGYRLGFGKGYYDRL 139 (194)
T ss_dssp SSCBCCSCCSSHHHH
T ss_pred CCceeccCCcHHHHH
Confidence 468899999999763
No 295
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.39 E-value=37 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.355 Sum_probs=9.1
Q ss_pred CCceecCCCCC
Q 023286 213 PNDWSCPMCGN 223 (284)
Q Consensus 213 ~~dw~c~~c~~ 223 (284)
.++|.|+.|..
T Consensus 39 ~g~W~C~~C~~ 49 (51)
T 1f62_A 39 DGEWQCPACQP 49 (51)
T ss_dssp SSCCSCTTTSC
T ss_pred CCcEECcCccc
Confidence 47999999964
No 296
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.17 E-value=52 Score=24.26 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=9.2
Q ss_pred CCCCceecCCCC
Q 023286 211 FGPNDWSCPMCG 222 (284)
Q Consensus 211 ~~~~dw~c~~c~ 222 (284)
+..++|.|+.|.
T Consensus 44 ~~~~~W~C~~C~ 55 (111)
T 2ysm_A 44 LKRAGWQCPECK 55 (111)
T ss_dssp TTSTTCCCTTTC
T ss_pred ccccCccCCcCC
Confidence 345899999875
No 297
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.59 E-value=43 Score=25.14 Aligned_cols=30 Identities=17% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCCceecCCCCCeee----cccccCccCCCCCCC
Q 023286 211 FGPNDWSCPMCGNINW----AKRTKCNICNTNKPG 241 (284)
Q Consensus 211 ~~~~dw~c~~c~~~n~----~~r~~c~~c~~~~~~ 241 (284)
+..-.-.|-.|++. | .....|-+|+...-+
T Consensus 63 L~v~p~~C~~CG~~-F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 63 LLIKPAQCRKCGFV-FKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp EEECCCBBTTTCCB-CCCCSSCCSSCSSSCCCCBC
T ss_pred EEEECcChhhCcCe-ecccCCCCCCCcCCCCCccC
Confidence 33456789999998 8 466889999875543
No 298
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=63 Score=20.76 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=17.0
Q ss_pred CCCCCCCCCCccCCccccccccccccCCC
Q 023286 145 QDGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (284)
Q Consensus 145 r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~ 173 (284)
...++.|. .|+..+ .-..|..|...
T Consensus 6 ~~~~~~C~--vC~~~g--~ll~Cd~C~~~ 30 (56)
T 2yql_A 6 SGHEDFCS--VCRKSG--QLLMCDTCSRV 30 (56)
T ss_dssp CSSCCSCS--SSCCSS--CCEECSSSSCE
T ss_pred CCCCCCCc--cCCCCC--eEEEcCCCCcc
Confidence 34588898 787654 45668877644
No 299
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.76 E-value=37 Score=22.61 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=11.6
Q ss_pred CceecCCCCCeeec
Q 023286 214 NDWSCPMCGNINWA 227 (284)
Q Consensus 214 ~dw~c~~c~~~n~~ 227 (284)
.-|+|+-|...|-.
T Consensus 32 ~~W~C~~C~~~N~~ 45 (59)
T 2yrc_A 32 KLWACNFCYQRNQF 45 (59)
T ss_dssp TEEECSSSCCEEEC
T ss_pred CEEEcccCCCcCCC
Confidence 47999999998853
No 300
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=21.72 E-value=14 Score=30.83 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=12.7
Q ss_pred CCCCCCCCCCcCcCCh
Q 023286 245 GGVRGGRGGGYKELDE 260 (284)
Q Consensus 245 ~~~~~g~~gg~~~~~~ 260 (284)
.|.|-||||||.||--
T Consensus 142 ~G~RLG~GgGyYDR~L 157 (203)
T 3hy3_A 142 HGNRLGRGKGYYDAYL 157 (203)
T ss_dssp TCCEECSSSCHHHHHH
T ss_pred CCceecCCCchHHHHH
Confidence 3588999999998743
No 301
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.40 E-value=50 Score=23.89 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=16.9
Q ss_pred cCCCCCCCCCCccCCccccccccccccCCC
Q 023286 144 QQDGDWMCPNTSCSNVNFAFRGVCNRCGTA 173 (284)
Q Consensus 144 ~r~GDW~C~~~~Cg~~NF~~R~~C~rC~~~ 173 (284)
....++.|. .|+... .-..|..|-..
T Consensus 21 ~d~n~~~C~--vC~~~g--~LL~CD~C~~~ 46 (88)
T 1fp0_A 21 LDDSATICR--VCQKPG--DLVMCNQCEFC 46 (88)
T ss_dssp SSSSSSCCS--SSCSSS--CCEECTTSSCE
T ss_pred cCCCCCcCc--CcCCCC--CEEECCCCCCc
Confidence 345688888 787654 45567777543
No 302
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=20.72 E-value=40 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=20.2
Q ss_pred CCCCCCCccCCcccc----ccccccccCCC
Q 023286 148 DWMCPNTSCSNVNFA----FRGVCNRCGTA 173 (284)
Q Consensus 148 DW~C~~~~Cg~~NF~----~R~~C~rC~~~ 173 (284)
.+.||.+.|+...|. .|..|-+|+..
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t 147 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSV 147 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSC
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceE
Confidence 688997779986554 48889999864
No 303
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=20.70 E-value=34 Score=18.67 Aligned_cols=8 Identities=50% Similarity=1.643 Sum_probs=6.7
Q ss_pred CceecCCC
Q 023286 214 NDWSCPMC 221 (284)
Q Consensus 214 ~dw~c~~c 221 (284)
+.|+|..|
T Consensus 20 nswacsgc 27 (27)
T 2hgo_A 20 NSWACSGC 27 (27)
T ss_dssp CEEECSCC
T ss_pred CcccccCC
Confidence 68999877
No 304
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.02 E-value=59 Score=21.85 Aligned_cols=23 Identities=26% Similarity=0.876 Sum_probs=17.9
Q ss_pred ecCCCCCeeecccccCccCCCCCCC
Q 023286 217 SCPMCGNINWAKRTKCNICNTNKPG 241 (284)
Q Consensus 217 ~c~~c~~~n~~~r~~c~~c~~~~~~ 241 (284)
.|+.|+.--. ...|-.|+.+-..
T Consensus 7 ~C~~Cg~YTL--k~~CP~CG~~t~~ 29 (60)
T 2aus_D 7 KCPKCGRYTL--KETCPVCGEKTKV 29 (60)
T ss_dssp ECTTTCCEES--SSBCTTTCSBCEE
T ss_pred ECCCCCCEEc--cccCcCCCCccCC
Confidence 6999987666 7789999986543
Done!