BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023287
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|B Chain B, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|C Chain C, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
Length = 188
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 47 LSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVF--- 102
+ LR Q LDV ET TKDNV V V A V +R + D + TQ++ Y+
Sbjct: 9 VDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV-----DPVKAV----TQVKNYIMATS 59
Query: 103 ----DVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158
+R+ + + LD++ +++ + ++ +++A +G ++ I D+E ++
Sbjct: 60 QISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQ 119
Query: 159 RAM 161
+AM
Sbjct: 120 KAM 122
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 15 VAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQL------DVRCET-----KTK 63
V + E FG E PG PW L +GD SLRL + + RCE K +
Sbjct: 53 VKVFEFFGDHQEAFRPGAIVSPWRLK---SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ 109
Query: 64 DNVFVNVVASVQYRAL 79
V + VVAS R L
Sbjct: 110 GTVQLEVVASPASRLL 125
>pdb|4E0R|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
pdb|4E0R|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
pdb|4G42|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To Pepitde P8d
pdb|4G42|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To Pepitde P8d
pdb|4G43|A Chain A, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To P5e
pdb|4G43|D Chain D, Structure Of The Chicken Mhc Class I Molecule Bf20401
Complexed To P5e
Length = 275
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 9 QVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLR 50
Q+++ + IR+R ++++ G H V W+ GC I D ++R
Sbjct: 74 QINRENLGIRQR--RYNQT--GGSHTVQWMFGCDILEDGTIR 111
>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein
Length = 113
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 47 LSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVI 105
+ LR +DV E KDNV V V A V Y+ + A Y +S+ I +
Sbjct: 5 VDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAVYNVSDFLMAIVKLAQTNL 62
Query: 106 RASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEP 153
RA + +++LD+ ++ I + EEL+K +G +I + I I+P
Sbjct: 63 RAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDP 110
>pdb|4E6Z|A Chain A, Tic22 From Plasmodium Falciparum
Length = 279
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 49 LRLQQLDVRCE-TKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTR-TQIQAYVFDVIR 106
L+L++ +V E +K K N++ +++S ++ +A Y LS T+ +++ VF
Sbjct: 146 LQLEKXEVNKEDSKKKQNIYWKLISS------KRQLQNALYYLSFTKKSELXYPVFYAEN 199
Query: 107 ASVPK--LDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDI 151
+ K ++ +F D+ +A+EE+ KA+S Y+I VD+
Sbjct: 200 LYIQKDGSNIIPLFFDLEDLKEAIEEQKNKALSKVDYKIKVLNXVDL 246
>pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
Length = 500
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 179 EAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVL 238
+ E I +K + + KY+ G G+ L D V + E+V G K +
Sbjct: 32 QKEYIETLKYVKENIDFKYIRGHGL----------LCDDVGIYREDVVGDEVKPFYNFTY 81
Query: 239 ITQYFDTMKEIGASSKSSSVFIP 261
I + FD+ EIG F+P
Sbjct: 82 IDRIFDSFLEIGIRPFVEIGFMP 104
>pdb|3VLD|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLD|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|C Chain C, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELE 133
Y+ DV+ VP D DDV E D+ KA+ E++
Sbjct: 95 YLLDVVDKLVPXADFDDVLEVYSAEDLVKALRSEID 130
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 112 LDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLR 171
+D+ +V +K DI K +EE+L+ GY+++ LI DI M E + A
Sbjct: 221 IDVSEVESKKEDIYKLLEEKLKNE----GYDLIVFLITDI---------MKEGSEA---- 263
Query: 172 VAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAI 210
+ K EK +K E S +L GV ++R++Q +
Sbjct: 264 LVVGNKEMFEKAFNVKV---EGNSVFLEGV-MSRKKQVV 298
>pdb|3VLE|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLE|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELE 133
Y+ DV+ VP D DDV E D+ KA+ E++
Sbjct: 95 YLLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEID 130
>pdb|4A3V|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|C Chain C, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 496
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELE 133
Y+ DV+ VP D DDV E D+ KA+ E++
Sbjct: 80 YLLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEID 115
>pdb|4A3T|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
pdb|4A3T|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
Length = 485
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELE 133
Y+ DV+ VP D DDV E D+ KA+ E++
Sbjct: 80 YLLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEID 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,349,495
Number of Sequences: 62578
Number of extensions: 270002
Number of successful extensions: 827
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 23
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)