Query 023287
Match_columns 284
No_of_seqs 189 out of 1690
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 1.1E-53 2.4E-58 374.0 32.2 262 12-275 1-262 (262)
2 KOG2620 Prohibitins and stomat 100.0 1.1E-50 2.3E-55 337.2 17.4 280 1-283 1-294 (301)
3 PRK11029 FtsH protease regulat 100.0 1.2E-47 2.7E-52 342.5 31.0 252 3-264 16-320 (334)
4 PRK10930 FtsH protease regulat 100.0 2.7E-47 5.9E-52 348.9 31.7 250 3-263 93-346 (419)
5 TIGR01933 hflK HflK protein. H 100.0 1.9E-46 4.1E-51 328.6 31.0 248 7-264 1-252 (261)
6 TIGR01932 hflC HflC protein. H 100.0 3.1E-46 6.7E-51 334.4 31.1 252 3-264 16-310 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.8E-45 3.9E-50 319.1 28.6 234 7-249 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 7.3E-45 1.6E-49 319.5 28.1 239 3-249 11-265 (266)
9 COG0330 HflC Membrane protease 100.0 9.4E-41 2E-45 297.1 30.6 257 3-266 17-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 9.3E-40 2E-44 278.5 26.9 213 10-261 1-214 (215)
11 cd03401 Band_7_prohibitin Band 100.0 1.2E-37 2.6E-42 261.7 21.9 190 6-205 1-194 (196)
12 cd03406 Band_7_3 A subgroup of 100.0 1.7E-36 3.6E-41 264.8 25.9 194 3-199 1-210 (280)
13 cd03402 Band_7_2 A subgroup of 100.0 8.2E-36 1.8E-40 253.3 21.3 170 6-180 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 7.2E-36 1.6E-40 251.7 13.8 222 2-264 50-274 (288)
15 smart00244 PHB prohibitin homo 100.0 4.8E-31 1E-35 214.2 19.2 156 5-164 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 2.1E-31 4.5E-36 220.1 14.8 170 8-181 1-178 (179)
17 KOG3090 Prohibitin-like protei 100.0 5.8E-27 1.3E-31 191.3 18.7 232 3-264 34-274 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 9E-27 2E-31 190.0 9.6 231 5-266 25-266 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 2.1E-22 4.5E-27 170.5 15.1 159 4-164 13-206 (207)
20 KOG2962 Prohibitin-related mem 99.9 6.8E-20 1.5E-24 150.7 19.0 190 4-196 20-225 (322)
21 cd03400 Band_7_1 A subgroup of 99.8 4.1E-20 8.8E-25 144.0 11.8 119 46-164 2-123 (124)
22 KOG2668 Flotillins [Intracellu 99.8 3.2E-18 6.9E-23 148.5 23.4 157 7-167 2-170 (428)
23 cd03399 Band_7_flotillin Band_ 99.8 1.4E-18 3E-23 136.1 10.9 117 47-163 2-126 (128)
24 COG2268 Uncharacterized protei 99.8 4.4E-17 9.6E-22 151.5 20.7 187 6-194 33-244 (548)
25 cd02106 Band_7 The band 7 doma 99.7 1.6E-15 3.5E-20 116.5 14.4 112 51-164 6-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 4E-12 8.6E-17 107.4 18.0 159 5-165 14-207 (211)
27 COG4260 Membrane protease subu 99.0 1.1E-08 2.4E-13 87.4 14.2 156 6-165 40-234 (345)
28 PTZ00491 major vault protein; 98.8 1.1E-06 2.3E-11 86.1 21.6 152 8-162 465-650 (850)
29 cd03405 Band_7_HflC Band_7_Hfl 97.3 0.00098 2.1E-08 57.6 7.3 44 180-223 166-209 (242)
30 PF12127 YdfA_immunity: SigmaW 96.8 0.034 7.3E-07 48.1 12.4 103 48-157 121-225 (316)
31 TIGR01932 hflC HflC protein. H 96.6 0.0095 2.1E-07 53.7 8.2 32 186-217 227-258 (317)
32 PRK11029 FtsH protease regulat 96.5 0.012 2.7E-07 53.2 8.5 72 145-223 202-274 (334)
33 TIGR01933 hflK HflK protein. H 96.5 0.013 2.8E-07 51.3 8.2 93 124-217 120-222 (261)
34 cd03404 Band_7_HflK Band_7_Hfl 96.4 0.016 3.4E-07 50.9 8.2 91 127-224 142-234 (266)
35 PF11978 MVP_shoulder: Shoulde 96.4 0.017 3.7E-07 43.5 7.0 96 59-154 10-117 (118)
36 PRK10930 FtsH protease regulat 96.2 0.037 8E-07 51.7 10.0 37 182-218 261-297 (419)
37 cd03407 Band_7_4 A subgroup of 96.2 0.015 3.3E-07 50.9 7.1 49 176-224 153-201 (262)
38 PRK13665 hypothetical protein; 96.0 0.086 1.9E-06 45.5 9.9 104 47-157 125-230 (316)
39 KOG2620 Prohibitins and stomat 95.5 0.029 6.3E-07 48.2 5.5 62 164-225 177-238 (301)
40 COG2268 Uncharacterized protei 94.6 1.1 2.3E-05 43.1 13.6 74 190-265 412-493 (548)
41 COG1580 FliL Flagellar basal b 94.0 0.66 1.4E-05 37.4 9.3 80 65-152 76-157 (159)
42 COG0330 HflC Membrane protease 91.9 0.55 1.2E-05 41.6 6.9 51 173-224 180-230 (291)
43 cd03401 Band_7_prohibitin Band 88.0 1.4 3E-05 36.5 5.8 25 193-217 171-195 (196)
44 PF03748 FliL: Flagellar basal 86.7 10 0.00022 27.5 10.3 51 99-151 44-96 (99)
45 PRK01558 V-type ATP synthase s 86.5 8 0.00017 32.4 9.5 49 157-205 8-58 (198)
46 PRK01558 V-type ATP synthase s 85.8 3.8 8.3E-05 34.3 7.3 8 255-262 120-127 (198)
47 KOG2668 Flotillins [Intracellu 85.5 2.8 6E-05 37.9 6.4 85 174-263 294-384 (428)
48 PRK07718 fliL flagellar basal 84.7 2.8 6E-05 33.1 5.6 50 100-151 88-139 (142)
49 PRK05697 flagellar basal body- 83.0 3.9 8.4E-05 32.1 5.7 53 99-151 78-134 (137)
50 cd03403 Band_7_stomatin_like B 81.3 3 6.5E-05 35.0 4.9 28 188-215 155-182 (215)
51 PRK02292 V-type ATP synthase s 81.2 15 0.00033 30.2 9.1 38 161-198 6-43 (188)
52 PRK01005 V-type ATP synthase s 80.6 34 0.00073 28.9 11.8 38 170-207 28-65 (207)
53 TIGR01147 V_ATP_synt_G vacuola 80.4 13 0.00028 28.2 7.4 40 160-199 7-46 (113)
54 PRK07021 fliL flagellar basal 80.3 23 0.0005 28.5 9.5 52 100-151 104-159 (162)
55 PRK06568 F0F1 ATP synthase sub 79.7 20 0.00044 28.7 8.9 12 236-247 129-140 (154)
56 PRK06654 fliL flagellar basal 78.3 26 0.00057 28.8 9.2 84 59-152 92-177 (181)
57 PRK05696 fliL flagellar basal 78.1 34 0.00073 27.8 10.0 54 98-151 110-167 (170)
58 PRK08404 V-type ATP synthase s 77.3 27 0.00059 25.9 8.5 36 159-194 3-38 (103)
59 PRK08455 fliL flagellar basal 76.4 7.8 0.00017 32.0 5.8 52 98-151 126-179 (182)
60 PRK01005 V-type ATP synthase s 76.4 16 0.00034 30.8 7.7 37 166-202 35-71 (207)
61 PRK12785 fliL flagellar basal 75.9 7.3 0.00016 31.6 5.4 51 99-151 111-163 (166)
62 COG2811 NtpF Archaeal/vacuolar 75.2 32 0.0007 25.8 9.0 34 160-193 8-41 (108)
63 PLN03086 PRLI-interacting fact 72.0 12 0.00025 36.5 6.5 20 241-263 80-99 (567)
64 TIGR01147 V_ATP_synt_G vacuola 71.2 36 0.00078 25.8 7.7 44 171-214 7-50 (113)
65 PRK08404 V-type ATP synthase s 70.8 24 0.00052 26.2 6.7 17 185-201 44-60 (103)
66 PF03179 V-ATPase_G: Vacuolar 70.3 11 0.00024 27.9 4.9 42 161-202 6-47 (105)
67 KOG3083 Prohibitin [Posttransl 70.2 5.5 0.00012 33.8 3.4 24 198-221 201-224 (271)
68 PRK04057 30S ribosomal protein 68.3 45 0.00097 28.1 8.5 82 58-148 100-183 (203)
69 PRK06231 F0F1 ATP synthase sub 63.9 88 0.0019 26.3 9.9 9 113-121 72-80 (205)
70 PRK14471 F0F1 ATP synthase sub 63.2 77 0.0017 25.4 9.6 9 113-121 32-40 (164)
71 TIGR03321 alt_F1F0_F0_B altern 63.2 90 0.002 26.9 9.9 34 175-208 81-114 (246)
72 CHL00118 atpG ATP synthase CF0 62.4 78 0.0017 25.2 9.8 8 114-121 47-54 (156)
73 PF03179 V-ATPase_G: Vacuolar 62.2 30 0.00065 25.5 5.9 42 174-215 8-49 (105)
74 PRK09174 F0F1 ATP synthase sub 61.8 96 0.0021 26.0 9.9 18 113-130 77-95 (204)
75 PRK15322 invasion protein OrgB 61.7 96 0.0021 26.0 11.0 31 230-264 91-121 (210)
76 PRK14474 F0F1 ATP synthase sub 59.8 1.1E+02 0.0025 26.4 9.9 31 175-205 81-111 (250)
77 TIGR03321 alt_F1F0_F0_B altern 57.9 1.2E+02 0.0027 26.0 9.9 30 171-200 88-117 (246)
78 PTZ00491 major vault protein; 57.7 1.3E+02 0.0029 30.8 10.9 10 71-80 561-570 (850)
79 PRK09098 type III secretion sy 56.9 62 0.0013 27.8 7.6 35 170-204 40-74 (233)
80 PRK08476 F0F1 ATP synthase sub 55.9 97 0.0021 24.2 9.8 11 113-123 31-41 (141)
81 PRK14472 F0F1 ATP synthase sub 55.7 1.1E+02 0.0024 24.8 9.9 11 112-122 41-51 (175)
82 TIGR02926 AhaH ATP synthase ar 55.7 71 0.0015 22.6 6.7 30 166-195 6-35 (85)
83 COG4864 Uncharacterized protei 55.4 1.3E+02 0.0029 25.6 11.1 88 63-157 141-229 (328)
84 PRK14475 F0F1 ATP synthase sub 55.3 1.1E+02 0.0024 24.6 9.8 17 113-129 34-51 (167)
85 PRK13454 F0F1 ATP synthase sub 53.9 1.2E+02 0.0025 24.9 8.6 11 113-123 55-65 (181)
86 COG1890 RPS1A Ribosomal protei 53.8 1.4E+02 0.0029 25.3 8.7 84 55-149 105-192 (214)
87 PRK09098 type III secretion sy 53.7 62 0.0013 27.8 7.1 28 168-195 49-76 (233)
88 PRK13453 F0F1 ATP synthase sub 53.3 1.2E+02 0.0026 24.5 9.9 11 112-122 41-51 (173)
89 PRK14473 F0F1 ATP synthase sub 53.3 1.2E+02 0.0025 24.3 9.6 10 113-122 32-41 (164)
90 PRK13461 F0F1 ATP synthase sub 52.7 90 0.002 24.8 7.6 10 113-122 29-38 (159)
91 COG2811 NtpF Archaeal/vacuolar 52.5 76 0.0017 23.8 6.4 31 164-194 23-53 (108)
92 KOG3090 Prohibitin-like protei 51.4 35 0.00075 29.1 4.9 74 126-204 155-229 (290)
93 PF06188 HrpE: HrpE/YscL/FliH 51.0 55 0.0012 27.2 6.2 29 170-198 31-59 (191)
94 PRK08475 F0F1 ATP synthase sub 50.7 1.3E+02 0.0029 24.2 9.2 20 110-129 43-63 (167)
95 CHL00019 atpF ATP synthase CF0 50.6 1.4E+02 0.003 24.4 9.9 22 109-130 44-66 (184)
96 PRK13428 F0F1 ATP synthase sub 50.1 1.6E+02 0.0034 28.0 9.9 14 236-249 144-157 (445)
97 PRK13460 F0F1 ATP synthase sub 50.1 1.4E+02 0.003 24.2 9.8 17 112-128 39-56 (173)
98 PRK09173 F0F1 ATP synthase sub 49.9 1.3E+02 0.0028 23.9 9.2 8 114-121 27-34 (159)
99 CHL00019 atpF ATP synthase CF0 49.5 1.4E+02 0.0031 24.3 9.9 6 189-194 114-119 (184)
100 cd03406 Band_7_3 A subgroup of 49.3 37 0.0008 30.1 5.1 75 127-209 125-209 (280)
101 PF01015 Ribosomal_S3Ae: Ribos 48.6 81 0.0018 26.3 6.8 78 59-151 107-187 (194)
102 PRK14471 F0F1 ATP synthase sub 48.5 1.4E+02 0.003 23.8 9.9 6 157-162 33-38 (164)
103 PF06188 HrpE: HrpE/YscL/FliH 44.3 1.8E+02 0.004 24.0 10.6 24 166-189 38-61 (191)
104 PRK06669 fliH flagellar assemb 44.2 1.3E+02 0.0028 26.4 7.9 39 162-200 81-119 (281)
105 PRK13428 F0F1 ATP synthase sub 43.8 2.9E+02 0.0063 26.2 10.7 8 114-121 26-33 (445)
106 PTZ00399 cysteinyl-tRNA-synthe 43.1 2.6E+02 0.0057 28.0 10.5 37 129-165 520-561 (651)
107 PRK07352 F0F1 ATP synthase sub 42.7 1.8E+02 0.0039 23.5 9.2 21 109-129 39-60 (174)
108 PRK07353 F0F1 ATP synthase sub 42.5 1.6E+02 0.0034 22.7 9.8 8 114-121 30-37 (140)
109 PRK09173 F0F1 ATP synthase sub 42.3 1.7E+02 0.0037 23.1 9.0 26 175-200 63-88 (159)
110 PRK05759 F0F1 ATP synthase sub 41.0 1.8E+02 0.0038 22.9 9.9 9 113-121 28-36 (156)
111 KOG0994 Extracellular matrix g 38.6 2.5E+02 0.0055 30.2 9.5 20 259-278 1505-1524(1758)
112 COG1390 NtpE Archaeal/vacuolar 37.8 2.4E+02 0.0052 23.5 10.7 27 194-220 59-85 (194)
113 PRK06669 fliH flagellar assemb 37.3 2.9E+02 0.0062 24.2 9.2 6 244-249 197-202 (281)
114 PRK13454 F0F1 ATP synthase sub 36.4 2.4E+02 0.0051 23.1 9.8 8 177-184 94-101 (181)
115 PRK07353 F0F1 ATP synthase sub 35.9 2E+02 0.0044 22.1 8.0 6 157-162 30-35 (140)
116 PRK13455 F0F1 ATP synthase sub 35.5 2.4E+02 0.0053 22.9 9.8 17 113-129 51-68 (184)
117 KOG0742 AAA+-type ATPase [Post 33.3 3.9E+02 0.0085 25.5 9.2 11 240-250 254-264 (630)
118 PRK12613 galactose-6-phosphate 32.3 39 0.00085 26.6 2.3 31 125-155 11-41 (141)
119 PRK14474 F0F1 ATP synthase sub 32.2 3.4E+02 0.0073 23.5 12.8 29 171-199 88-116 (250)
120 PF03780 Asp23: Asp23 family; 29.2 1E+02 0.0023 22.4 4.2 25 125-149 78-103 (108)
121 KOG1772 Vacuolar H+-ATPase V1 29.2 2.4E+02 0.0053 21.0 6.3 38 161-198 8-45 (108)
122 PHA02571 a-gt.4 hypothetical p 28.9 2.5E+02 0.0054 21.0 10.4 72 174-249 25-96 (109)
123 COG0711 AtpF F0F1-type ATP syn 28.7 3.1E+02 0.0066 21.9 9.8 9 113-121 30-38 (161)
124 KOG1772 Vacuolar H+-ATPase V1 26.5 2.7E+02 0.006 20.8 5.7 42 173-214 9-50 (108)
125 PF05103 DivIVA: DivIVA protei 25.8 23 0.00049 27.1 0.0 23 178-200 83-105 (131)
126 COG4396 Mu-like prophage host- 25.0 1E+02 0.0023 24.1 3.5 45 71-129 94-138 (170)
127 PRK06568 F0F1 ATP synthase sub 24.3 3.7E+02 0.0081 21.5 9.9 19 176-194 66-84 (154)
128 TIGR03825 FliH_bacil flagellar 23.3 1.9E+02 0.0042 25.0 5.4 6 142-147 21-26 (255)
129 TIGR01120 rpiB ribose 5-phosph 23.2 74 0.0016 25.2 2.4 31 125-155 10-43 (143)
130 PRK03963 V-type ATP synthase s 20.6 4.8E+02 0.01 21.3 12.1 100 162-265 25-130 (198)
131 PF02502 LacAB_rpiB: Ribose/Ga 20.4 2.8E+02 0.0061 21.7 5.2 27 126-152 11-37 (140)
132 KOG2007 Cysteinyl-tRNA synthet 20.3 3.6E+02 0.0079 26.1 6.6 11 136-146 504-514 (586)
133 PRK15354 type III secretion sy 20.3 4.5E+02 0.0097 22.3 6.5 48 173-220 34-81 (224)
134 PRK06328 type III secretion sy 20.1 2.9E+02 0.0062 23.5 5.6 6 244-249 123-128 (223)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.1e-53 Score=374.04 Aligned_cols=262 Identities=66% Similarity=0.964 Sum_probs=248.7
Q ss_pred CCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcccchhhHhcccc
Q 023287 12 QSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLS 91 (284)
Q Consensus 12 ~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~ 91 (284)
+|++|||++||++.++++||+||++||++ .+...++++.++++++.+++|+|++.|.++++++|||.||.+.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~-~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPLVE-TVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEecccc-ceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 58999999999999999999999999975 44458999999999998899999999999999999999977778999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Q 023287 92 NTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLR 171 (284)
Q Consensus 92 ~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~ 171 (284)
++...|.+.+++++|+++|++++++++++|++|+..+.+.+++.+++|||.|++|.|++++||+++.++|++++.|++++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 023287 172 VAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGA 251 (284)
Q Consensus 172 ~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~ 251 (284)
++.+.+||+++...+.+|+|++++.+++|+|+|++.++.|+|+++.+..+.++++..++++++++++.++|+|+|++++.
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999877778888999999999999999987
Q ss_pred cCCCcEEEecCCCCcHhhHHHHHH
Q 023287 252 SSKSSSVFIPHGPGAVQDIATQIR 275 (284)
Q Consensus 252 ~~~~~~i~~p~~~~~~~~~~~~~~ 275 (284)
+++ +++++|.+++|+.+++.+|+
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~~ 262 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQIR 262 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhcC
Confidence 555 89999999999999998874
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=1.1e-50 Score=337.24 Aligned_cols=280 Identities=44% Similarity=0.647 Sum_probs=255.5
Q ss_pred CCCceeEEE--ecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEE-ecCCCcccCCCcEEEEEEEEEEE
Q 023287 1 MGNAFCCVQ--VDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQL-DVRCETKTKDNVFVNVVASVQYR 77 (284)
Q Consensus 1 ~~~~~~~~~--V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~-~~~~~v~TkD~~~v~v~~~v~yr 77 (284)
||-.+||.+ ||+.+++|+.|||||.++++||+||.+|+++ ++.|..+++.... +...+..|+||+.++++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~~d-~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPVID-KIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhhhh-hHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 677888877 9999999999999999999999999999975 5556666554444 44459999999999999999999
Q ss_pred EcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHH
Q 023287 78 ALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHV 157 (284)
Q Consensus 78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~ 157 (284)
|-||...++.|+++||+.+|.+++++.+|+.++++++|.++..|+.++..+.++|++..+.||+++.+..|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99976666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------
Q 023287 158 KRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTT-------- 229 (284)
Q Consensus 158 ~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~-------- 229 (284)
.+||+....|+|.+++++.++|++++.++.+|+|+++++++..+|.+..+...+.|+++++..++++.+...
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988766432
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHhccCCCcEEEecCCCCcHhhHHHHHHHHHhhhcC
Q 023287 230 ---AKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASS 283 (284)
Q Consensus 230 ---~~~~~~~~l~~~~l~~l~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~ 283 (284)
.-++++++...+|+.+..+++ +.++++|+|.+++++.+|..|+++++.|++.
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~ 294 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSN 294 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhc
Confidence 334467778889999998886 5789999999999999999999999998764
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.2e-47 Score=342.50 Aligned_cols=252 Identities=18% Similarity=0.232 Sum_probs=227.1
Q ss_pred CceeEEEecCCeEEEEeecCccce-------eeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEE
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFDE-------VLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASV 74 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~~-------~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v 74 (284)
+++|+++|++||+||+++||++.+ +++||+||++||++ .+ ..+|+|.+.++.+. .++|+|++.|.||+++
T Consensus 16 l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid-~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V 93 (334)
T PRK11029 16 LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIE-TV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYI 93 (334)
T ss_pred HHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCce-EE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEE
Confidence 467999999999999999999986 48999999999975 44 58999999999985 8999999999999999
Q ss_pred EEEEcccchhhHhccc--cCH---HHHHHHHHHHHHHHHcCCCcHHHHHh-cHHHHHHHHHHHHHHH-------------
Q 023287 75 QYRALAKKASDAFYKL--SNT---RTQIQAYVFDVIRASVPKLDLDDVFE-QKNDIAKAVEEELEKA------------- 135 (284)
Q Consensus 75 ~yrI~d~~~~~~~~~~--~~~---~~~l~~~~~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~------------- 135 (284)
+|||.| +.++++.+ .|+ ...|++.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 94 ~yrI~D--p~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~ 171 (334)
T PRK11029 94 KWRISD--FSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAA 171 (334)
T ss_pred EEEECC--HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 999998 55666543 244 46889999999999999999999998 6999999999999964
Q ss_pred --------------------------HhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023287 136 --------------------------MSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRA 189 (284)
Q Consensus 136 --------------------------l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A 189 (284)
+.+|||+|.+|.|++++||+++.++|++++.|+|++++...+|||++.+..++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a 251 (334)
T PRK11029 172 DDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRA 251 (334)
T ss_pred ccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhccCCCcEEEecCCC
Q 023287 190 EGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGP 264 (284)
Q Consensus 190 ~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~i~~p~~~ 264 (284)
+|+.++.++.|+|++++..++|+|++++++.+++++. .+| .++.+++||++|++++. ++++++++|++.
T Consensus 252 ~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~--~~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~~~ 320 (334)
T PRK11029 252 TADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS--QDP---DFYAFIRSLRAYENSFS-GNQDVMVLSPDS 320 (334)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCH---HHHHHHHHHHHHHHHhc-CCCcEEEECCCh
Confidence 9999999999999999999999999999999999997 344 47888999999999985 345789999874
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=2.7e-47 Score=348.93 Aligned_cols=250 Identities=19% Similarity=0.264 Sum_probs=224.4
Q ss_pred CceeEEEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEec-CCCcccCCCcEEEEEEEEEEEEccc
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDV-RCETKTKDNVFVNVVASVQYRALAK 81 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~-~~~v~TkD~~~v~v~~~v~yrI~d~ 81 (284)
+++|||+|+++|+|||++||++.++++||+||++||++ .+ +.++++.+.... +..++|+|++.|.|+++|+|||.|
T Consensus 93 l~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~PfId-~V-~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D- 169 (419)
T PRK10930 93 AASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTFID-EV-KPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD- 169 (419)
T ss_pred HHheEEEECCCeEEEEEECCcCcceeCCceEEecCceE-EE-EEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC-
Confidence 46899999999999999999999999999999999975 44 478877655433 348999999999999999999998
Q ss_pred chhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHh-cHHHHHHHHHHHHHHHHhhc--CeEEEEEEEeeccCCHHHH
Q 023287 82 KASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFE-QKNDIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDVHVK 158 (284)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~ 158 (284)
+.+++|++.+++..|++.++++||+++++++++++++ +|++|..++++.|++.+++| ||+|.+|+|++++||+++.
T Consensus 170 -p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~ 248 (419)
T PRK10930 170 -PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVK 248 (419)
T ss_pred -HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHH
Confidence 6788999999999999999999999999999999998 59999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 023287 159 RAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVL 238 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l 238 (284)
+||++++.|++++++.+.+||++++..+.+|+++|++.+.+|+|++++..++|+|+++++..+..+|. .+|+++.
T Consensus 249 ~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr--- 323 (419)
T PRK10930 249 AAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITR--- 323 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999888888876 5676554
Q ss_pred HHHHHHHHHHHhccCCCcEEEecCC
Q 023287 239 ITQYFDTMKEIGASSKSSSVFIPHG 263 (284)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~i~~p~~ 263 (284)
...|||+|++++. +.+.|+++.+
T Consensus 324 ~RlYletme~vl~--~~~kvivd~~ 346 (419)
T PRK10930 324 ERLYIETMEKVLG--HTRKVLVNDK 346 (419)
T ss_pred HHHHHHHHHHHHc--cCCEEEEeCC
Confidence 4569999999974 4444555443
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.9e-46 Score=328.65 Aligned_cols=248 Identities=18% Similarity=0.260 Sum_probs=224.7
Q ss_pred EEEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecC-CCcccCCCcEEEEEEEEEEEEcccchhh
Q 023287 7 CVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVR-CETKTKDNVFVNVVASVQYRALAKKASD 85 (284)
Q Consensus 7 ~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~-~~v~TkD~~~v~v~~~v~yrI~d~~~~~ 85 (284)
+|+|++||+||+++||++.++++||+||++||++ .+ +.+|++.+....+ ..++|+|++.+.++++++|||.| +.+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~i~-~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPFIE-EV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--PYK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCCce-EE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--HHH
Confidence 5899999999999999999999999999999975 44 5888875442223 36899999999999999999998 677
Q ss_pred HhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHh-cHHHHHHHHHHHHHHHHhhc--CeEEEEEEEeeccCCHHHHHHHH
Q 023287 86 AFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFE-QKNDIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDVHVKRAMN 162 (284)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~ai~ 162 (284)
+++++.+++..|.+.+++++|+++|+++++++++ +|++|.+.+.+.+++.++.| ||.|++|.|++++||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 8999999999999999999999999999999999 89999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHH
Q 023287 163 EINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQY 242 (284)
Q Consensus 163 ~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~ 242 (284)
+++.|++++++.+.+|+++++..+.+|++++++.+++|+|++++..++|+|+++++..++++|. .+|+ ++.+++|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~--~~p~---~~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYK--KAPD---VTRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hChH---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 3454 6677789
Q ss_pred HHHHHHHhccCCCcEEEecCCC
Q 023287 243 FDTMKEIGASSKSSSVFIPHGP 264 (284)
Q Consensus 243 l~~l~~~~~~~~~~~i~~p~~~ 264 (284)
++++++++. +++++++++.+.
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~ 252 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKG 252 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCC
Confidence 999999984 456678887664
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=3.1e-46 Score=334.42 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=225.3
Q ss_pred CceeEEEecCCeEEEEeecCccceee-------CCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEE
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFDEVL-------DPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASV 74 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~~~~-------~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v 74 (284)
+++||++|++||+||+++||++.++. +||+||++||++ .+ +.+|+|.++++.+. .++|+|++++.|++++
T Consensus 16 l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~-~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V 93 (317)
T TIGR01932 16 LFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIE-HV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYI 93 (317)
T ss_pred HHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEecccc-EE-EEeeeeEEEecCCcceeECCCCCEEEEEEEE
Confidence 46899999999999999999998654 799999999975 44 58999999999876 8999999999999999
Q ss_pred EEEEcccchhhHhcccc--C---HHHHHHHHHHHHHHHHcCCCcHHHHHhc-HHHH------------------------
Q 023287 75 QYRALAKKASDAFYKLS--N---TRTQIQAYVFDVIRASVPKLDLDDVFEQ-KNDI------------------------ 124 (284)
Q Consensus 75 ~yrI~d~~~~~~~~~~~--~---~~~~l~~~~~~~lr~~i~~~~~~ei~~~-R~~i------------------------ 124 (284)
+|||.| +.+++++++ + ++..|++.+++++|+++|++++++++++ |+++
T Consensus 94 ~yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (317)
T TIGR01932 94 RWRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITK 171 (317)
T ss_pred EEEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccch
Confidence 999998 667777655 3 4568999999999999999999999974 6655
Q ss_pred -----HHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023287 125 -----AKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLA 199 (284)
Q Consensus 125 -----~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~ 199 (284)
...+.+.+...+.+|||.|++|.|++++||+++.++|++++.|+|++++...++++++.+..+.|+|++++.++.
T Consensus 172 ~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~ 251 (317)
T TIGR01932 172 GREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKIL 251 (317)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhccCCCcEEEecCCC
Q 023287 200 GVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGP 264 (284)
Q Consensus 200 Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~i~~p~~~ 264 (284)
|+|++++..++|+|++++++.++++|.. +|+ ++-+++||++|+++++ ++++++++|+++
T Consensus 252 aeA~a~a~~~~Aegea~a~~~~~~a~~~--~p~---~~~~~~~le~~~~~~~-~~~~~~vl~~~~ 310 (317)
T TIGR01932 252 SEAYRTARIIKGEGDAEAAKIYSDAYGK--DPE---FYSFWRSLEAYEKSFK-DNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcc--CHH---HHHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence 9999999999999999999999999873 454 6667899999999985 456689999874
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.8e-45 Score=319.11 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=215.6
Q ss_pred EEEecCCeEEEEeecCccce-eeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchh
Q 023287 7 CVQVDQSTVAIRERFGKFDE-VLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKAS 84 (284)
Q Consensus 7 ~~~V~~ge~~Vv~~fG~~~~-~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~ 84 (284)
||+|++||+||+++||++.+ +++||+||++||+++ + +.+|++.+.++.+. .++|+|++++.+++++.|||.| +.
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~-v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQ-V-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD--PL 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcce-E-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC--HH
Confidence 58999999999999999987 689999999999754 3 68999999998764 8999999999999999999998 56
Q ss_pred hHhccccCHH----HHHHHHHHHHHHHHcCCCcHHHHHhc-HHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHH
Q 023287 85 DAFYKLSNTR----TQIQAYVFDVIRASVPKLDLDDVFEQ-KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKR 159 (284)
Q Consensus 85 ~~~~~~~~~~----~~l~~~~~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ 159 (284)
.+++++.++. ..|.+.+++.+|++++++++++++++ |++|++.+.+.+++.+.+|||+|++|.|++|+||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 7777776543 68999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 023287 160 AMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLI 239 (284)
Q Consensus 160 ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~ 239 (284)
+|++++.|+|++.+.+.+|++++.+..++|++++++.++.|+|++++.+++|+|++++++.+++++. .+|+ ++.+
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~--~~p~---~~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG--KDPE---FYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 3564 6667
Q ss_pred HHHHHHHHHH
Q 023287 240 TQYFDTMKEI 249 (284)
Q Consensus 240 ~~~l~~l~~~ 249 (284)
+++|++|+.+
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 7899999865
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=7.3e-45 Score=319.48 Aligned_cols=239 Identities=23% Similarity=0.276 Sum_probs=214.2
Q ss_pred CceeEEEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEE----------EE--ec-CCCcccCCCcEEE
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQ----------QL--DV-RCETKTKDNVFVN 69 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~----------~~--~~-~~~v~TkD~~~v~ 69 (284)
+++||++|++||+|||++||++.++++||+||++||+++ +...++++.+ .. .. +..++|+|++.+.
T Consensus 11 ~~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~ 89 (266)
T cd03404 11 LLSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIE-VVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVD 89 (266)
T ss_pred HHcEEEEECCCceEEeEEcCccccccCCceeEecCCCcE-EEEEecceeEEeeccccccccccCCCcccceEeCCCCEEE
Confidence 468999999999999999999999999999999999754 3334443221 11 11 1378999999999
Q ss_pred EEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhc-HHHHHHHHHHHHHHHHhhc--CeEEEEE
Q 023287 70 VVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ-KNDIAKAVEEELEKAMSAY--GYEIVQT 146 (284)
Q Consensus 70 v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~--Gi~v~~v 146 (284)
+++.+.|||.| +.+++++..|++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.++.| ||.|++|
T Consensus 90 vd~~v~yrI~d--~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v 167 (266)
T cd03404 90 VEFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGV 167 (266)
T ss_pred EEEEEEEEECC--HHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEE
Confidence 99999999998 56788888999999999999999999999999999996 9999999999999999977 9999999
Q ss_pred EEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023287 147 LIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVP 226 (284)
Q Consensus 147 ~I~~i~~p~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~ 226 (284)
.|++++||+++.++|++++.|++++++.+.+|+++++..+..|+|+|++.++.|+|++++..++|+|+++++..++++|.
T Consensus 168 ~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~ 247 (266)
T cd03404 168 NLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYK 247 (266)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 023287 227 GTTAKDILDMVLITQYFDTMKEI 249 (284)
Q Consensus 227 ~~~~~~~~~~~l~~~~l~~l~~~ 249 (284)
. +|+ .+.++.|+++|+++
T Consensus 248 ~--~~~---~~~~~~~~~~~~~~ 265 (266)
T cd03404 248 K--APD---VTRERLYLETMEEV 265 (266)
T ss_pred h--ChH---HHHHHHHHHHHHHh
Confidence 3 464 44566799999986
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-41 Score=297.07 Aligned_cols=257 Identities=28% Similarity=0.409 Sum_probs=231.5
Q ss_pred CceeEEEecCCeEEEEeecCccceeeC-CcceeecCC---cceeEeeeeceeEEEEec-CC-CcccCCCcEEEEEEEEEE
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFDEVLD-PGCHCVPWL---LGCQIAGDLSLRLQQLDV-RC-ETKTKDNVFVNVVASVQY 76 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~~~~~-pG~~~~~P~---~~~~v~~~v~~r~~~~~~-~~-~v~TkD~~~v~v~~~v~y 76 (284)
+++++++|++++.+++.+||++.++++ ||+||++|| +. .....++.+.+.++. ++ .++|+|+..|.+|++++|
T Consensus 17 ~~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~-~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~ 95 (291)
T COG0330 17 LFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIE-EVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQY 95 (291)
T ss_pred HHceeEEEcCCceEEEEEecceeeecCCCceEEEcCCcccee-eeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEE
Confidence 467899999999999999999999998 999999999 33 333578888999999 54 899999999999999999
Q ss_pred EEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHH-HHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCH
Q 023287 77 RALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKN-DIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDV 155 (284)
Q Consensus 77 rI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 155 (284)
||.| +..+++++.+++..+.+.+++.+|++++++++++++++|+ .++..+.+.|++.+++|||.|.+|+|++++||+
T Consensus 96 rv~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ 173 (291)
T COG0330 96 RVTD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPE 173 (291)
T ss_pred EEcC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCH
Confidence 9999 5689999999999999999999999999999999999877 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 023287 156 HVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILD 235 (284)
Q Consensus 156 ~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~ 235 (284)
++..+|.+++.|++++++.+.+|+++++..+.+|+|++++..+.++|++.+ +..++|++++++.+++++.+. ...+
T Consensus 174 ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~~---~~~~ 249 (291)
T COG0330 174 EVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALREA---PAAP 249 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhcccc---cchh
Confidence 999999999999999999999999999999999999999999999999988 555555555788888877642 2235
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEecCCCCc
Q 023287 236 MVLITQYFDTMKEIGASSKSSSVFIPHGPGA 266 (284)
Q Consensus 236 ~~l~~~~l~~l~~~~~~~~~~~i~~p~~~~~ 266 (284)
++.+++|++.+.+.+.+++++++++|.+.++
T Consensus 250 ~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 250 QALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 8889999999999987778899999988655
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=9.3e-40 Score=278.46 Aligned_cols=213 Identities=30% Similarity=0.402 Sum_probs=180.2
Q ss_pred ecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhc
Q 023287 10 VDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFY 88 (284)
Q Consensus 10 V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~ 88 (284)
|++||+||+++||++.++++||+||++||++ .+.+.+|++.++++++. ++.|+|++++.+++++.|||.| +.++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~~~-~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPFID-RIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEeccce-EEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence 7899999999999999999999999999974 43268999999999976 7999999999999999999988 567888
Q ss_pred cccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023287 89 KLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAA 168 (284)
Q Consensus 89 ~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~ 168 (284)
.+.|++..+.+.+++++|++++++++++++++|+++++.+++.++..+.+|||+|++|.|++++||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 023287 169 RLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKE 248 (284)
Q Consensus 169 ~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~ 248 (284)
+++++.+.+|++++.+.++.|+|+++... + ..++.++++++++.
T Consensus 158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~~--------------------------------~----~~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEGERQAAILLAEAAKQAAI--------------------------------N----PAALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHcc--------------------------------C----HHHHHHHHHHHHHH
Confidence 88776554444444433333333322211 1 25567799999999
Q ss_pred HhccCCCcEEEec
Q 023287 249 IGASSKSSSVFIP 261 (284)
Q Consensus 249 ~~~~~~~~~i~~p 261 (284)
++++.+.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9887666666555
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.2e-37 Score=261.75 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=160.9
Q ss_pred eEEEecCCeEEEEeecCccce--eeCCcceeecCCcceeEeeeeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcccch
Q 023287 6 CCVQVDQSTVAIRERFGKFDE--VLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKA 83 (284)
Q Consensus 6 ~~~~V~~ge~~Vv~~fG~~~~--~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d~~~ 83 (284)
||++|++|++||+++||+... +++||+||++||++ .+ +.+|++.+.++++..+.|+|++.|++++.++|++.++.+
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~-~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQ-KP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccc-ee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 689999999999999998764 89999999999975 44 589999999998888999999999999999999986545
Q ss_pred hhHhcccc-CH-HHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHH
Q 023287 84 SDAFYKLS-NT-RTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAM 161 (284)
Q Consensus 84 ~~~~~~~~-~~-~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai 161 (284)
..++..++ ++ +..|.+.+++.+|+++|+|+++|++++|++|+..+.+.+++.+.+|||.|++|.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 44443343 44 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHH
Q 023287 162 NEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIAR 205 (284)
Q Consensus 162 ~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~ 205 (284)
++++.|+++.+++. ..+.+|+++|++.+++|+|+|+
T Consensus 159 ~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 159 EAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhh
Confidence 99999998866421 2334455666666666655554
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.7e-36 Score=264.78 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=169.7
Q ss_pred CceeEEEecCCeEEEEeecCccc-eeeCCcceeecCCcceeEeeeeceeEEEEecC-CCcccCCCcEEEEEE-EEEEEEc
Q 023287 3 NAFCCVQVDQSTVAIRERFGKFD-EVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVR-CETKTKDNVFVNVVA-SVQYRAL 79 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~~fG~~~-~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~-~~v~TkD~~~v~v~~-~v~yrI~ 79 (284)
+++|+++|++||+||+++||++. .+++||+||++||++ .+ ..++++.++++.+ ..+.|+||+.+.+|. .+.|++.
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId-~V-~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivd 78 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFIT-TY-KSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLI 78 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCce-EE-EEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecC
Confidence 46799999999999999999985 578999999999974 44 3788898888876 488999999999995 4666666
Q ss_pred ccchhhHh--ccccCHHHHHHHHHHHHHHHHcCCCcHHHHHh-cHHHHHHHHHHHHHHHHhhc--CeEEEEEEEeeccCC
Q 023287 80 AKKASDAF--YKLSNTRTQIQAYVFDVIRASVPKLDLDDVFE-QKNDIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPD 154 (284)
Q Consensus 80 d~~~~~~~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p 154 (284)
+..++..+ |...+....|.+.+++.+|+++|+++++++++ +|+++...+++.+++.+++| ||+|.+|.|++++||
T Consensus 79 p~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P 158 (280)
T cd03406 79 PDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIP 158 (280)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCC
Confidence 54444444 34446677999999999999999999999999 69999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023287 155 VHVKRAMNEINAAARLRV--------AANEKAEAEKIVQIKRAEGEAESKYLA 199 (284)
Q Consensus 155 ~~~~~ai~~~~~A~~~~~--------a~~~~Ae~~~~~~~~~A~aeae~~~~~ 199 (284)
+++.++| ++|.|||++. +.+.+||+++...+.+|+++|+..++.
T Consensus 159 ~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~ 210 (280)
T cd03406 159 EAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL 210 (280)
T ss_pred HHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence 9999998 7999999999 999999999999999999999866654
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=8.2e-36 Score=253.33 Aligned_cols=170 Identities=15% Similarity=0.275 Sum_probs=157.5
Q ss_pred eEEEecCCeEEEEeecCccceee-CCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccch
Q 023287 6 CCVQVDQSTVAIRERFGKFDEVL-DPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKA 83 (284)
Q Consensus 6 ~~~~V~~ge~~Vv~~fG~~~~~~-~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~ 83 (284)
|+|+|+|||.||+++||++.++. +||+||++||+ +. ..+|+|.++++.+. .+.|+|++++.+++.++|||.| |
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence 68999999999999999999865 99999999997 33 48999999999887 7999999999999999999998 6
Q ss_pred hhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHh-------cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHH
Q 023287 84 SDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFE-------QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVH 156 (284)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (284)
.+++|++.|+...|...+++++|+++|+|+++++++ +|++++.++++.+++.++.|||+|.+|.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 789999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023287 157 VKRAMNEINAAARLRVAANEKAEA 180 (284)
Q Consensus 157 ~~~ai~~~~~A~~~~~a~~~~Ae~ 180 (284)
+.+||.+++.|+++.+|....+++
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999888876655554
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=7.2e-36 Score=251.69 Aligned_cols=222 Identities=23% Similarity=0.315 Sum_probs=183.3
Q ss_pred CCceeEEEecCCeEEEEeecCccce--eeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEE
Q 023287 2 GNAFCCVQVDQSTVAIRERFGKFDE--VLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRA 78 (284)
Q Consensus 2 ~~~~~~~~V~~ge~~Vv~~fG~~~~--~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI 78 (284)
..|+|+++|++.|++|++|+|+... ..|||+.|++|+|++ ..+||+|++.+++|+ +++|||.+.+.||+.|+|||
T Consensus 50 S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt--~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri 127 (288)
T KOG2621|consen 50 SIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDT--FRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI 127 (288)
T ss_pred HHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccce--eeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe
Confidence 3588999999999999999999975 779999999999864 369999999999998 99999999999999999999
Q ss_pred cccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHH
Q 023287 79 LAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158 (284)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 158 (284)
.| |...+.+++|.....+-++++.||+++|+.++.|++++|+.|+.+++..|.+....|||+|++|+|.||++|.+.+
T Consensus 128 ~d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlq 205 (288)
T KOG2621|consen 128 SD--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQ 205 (288)
T ss_pred cC--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhh
Confidence 99 6778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 023287 159 RAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVL 238 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l 238 (284)
.+|.....|.++..+.+..||+++ .+-. +++++...++ .+| ..+
T Consensus 206 ramaaeAeA~reA~Akviaaege~----------------------~as~----al~~aa~v~~------~sp----~al 249 (288)
T KOG2621|consen 206 RAMAAEAEATREARAKVIAAEGEK----------------------KASE----ALKEAADVIS------ESP----IAL 249 (288)
T ss_pred hhhhchhhhhhhhhhhHHHHHhhh----------------------HHHH----HHHHhhcccc------CCc----hhh
Confidence 988765544444443333333222 2211 1222222221 223 456
Q ss_pred HHHHHHHHHHHhccCCCcEEEecCCC
Q 023287 239 ITQYFDTMKEIGASSKSSSVFIPHGP 264 (284)
Q Consensus 239 ~~~~l~~l~~~~~~~~~~~i~~p~~~ 264 (284)
+.+||++|..++. .++++++.|.+-
T Consensus 250 qLryLqtl~sia~-e~~~tivfP~p~ 274 (288)
T KOG2621|consen 250 QLRYLQTLNSIAA-EKNSTIVFPLPI 274 (288)
T ss_pred hhhhhhcchhhhc-CCCCCcccCCCH
Confidence 7799999999975 677799999763
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.98 E-value=4.8e-31 Score=214.17 Aligned_cols=156 Identities=29% Similarity=0.441 Sum_probs=144.7
Q ss_pred eeEEEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccch
Q 023287 5 FCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKA 83 (284)
Q Consensus 5 ~~~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~ 83 (284)
+||++|++||+||+++||++.++++||+||++||+. .+ +.++++.++++.+. .+.|+|++++.+++++.|||.| +
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~~~-~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d--~ 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPFID-RV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLD--P 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEeccee-EE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEcc--H
Confidence 489999999999999999999999999999999974 43 58999999998876 8899999999999999999998 4
Q ss_pred hhHhccccCHH-HHHHHHHHHHHHHHcCCCcHHHHHh-cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHH
Q 023287 84 SDAFYKLSNTR-TQIQAYVFDVIRASVPKLDLDDVFE-QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAM 161 (284)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai 161 (284)
.+++++..+++ ..|++.+++++|+++++++++++++ +|+++++.+.+.+++.+++||++|.+|.|+++++|+++.++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 56778777877 5999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHH
Q 023287 162 NEI 164 (284)
Q Consensus 162 ~~~ 164 (284)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 876
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=2.1e-31 Score=220.09 Aligned_cols=170 Identities=29% Similarity=0.460 Sum_probs=117.7
Q ss_pred EEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCC---CcccCCCcEEEEEEEEEEEEcccchh
Q 023287 8 VQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC---ETKTKDNVFVNVVASVQYRALAKKAS 84 (284)
Q Consensus 8 ~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~---~v~TkD~~~v~v~~~v~yrI~d~~~~ 84 (284)
|+|++||+||+++||++..+++||+||++||+. .+ +.+|++.++++++. .+.|+|+.++.+++++.|||.+ +.
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~~~-~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~--~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPFIQ-KV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIED--PP 76 (179)
T ss_dssp -------------------------------EE-E---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCCcC-eE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEech--HH
Confidence 589999999999999999999999999999854 44 58999999999988 9999999999999999999976 45
Q ss_pred hHhccc----cCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHH
Q 023287 85 DAFYKL----SNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRA 160 (284)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 160 (284)
.++.++ .+++..|++.+++++|++++++++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.+++||+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 666666 5788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH
Q 023287 161 MNEINAAARLR-VAANEKAEAE 181 (284)
Q Consensus 161 i~~~~~A~~~~-~a~~~~Ae~~ 181 (284)
|.++..|++++ ++++.+|++|
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999888 6665555554
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.8e-27 Score=191.29 Aligned_cols=232 Identities=21% Similarity=0.292 Sum_probs=188.5
Q ss_pred CceeEEEecCCeEEEEe-ecCccc-eeeCCcceeecCCcceeEeeeeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcc
Q 023287 3 NAFCCVQVDQSTVAIRE-RFGKFD-EVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALA 80 (284)
Q Consensus 3 ~~~~~~~V~~ge~~Vv~-~fG~~~-~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d 80 (284)
.-.|+|.|+-||++|++ |+|.++ +++..|+||.+||++.-+ .+|+|-+...+.....|+|-+.|++...|--|...
T Consensus 34 v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pI--iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~ 111 (290)
T KOG3090|consen 34 VTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPI--IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA 111 (290)
T ss_pred ecceeEeecCCceEEEEeccccchhccccCCceEeeeccccce--eeeeccCcccccCCCCCcceeEEEeeeEEecCCCh
Confidence 34578999999999986 366665 578999999999986544 78888888888889999999999999999888876
Q ss_pred cchhhHhcccc-CHHH-HHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHH
Q 023287 81 KKASDAFYKLS-NTRT-QIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158 (284)
Q Consensus 81 ~~~~~~~~~~~-~~~~-~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 158 (284)
...+..+..++ ||++ .+-+++...|+.++++|+.+++++.|+.++..+++.|-++..++.|.+++|.|+++.|.+++.
T Consensus 112 ~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efT 191 (290)
T KOG3090|consen 112 DQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFT 191 (290)
T ss_pred hhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHH
Confidence 55666666665 8876 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 023287 159 RAMNEINAAARLRVAA---NEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILD 235 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~---~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~ 235 (284)
.|++.++.|.|+.+++ ..+|+.+++..+.+|+|||+++.. .++|.+. +|
T Consensus 192 aAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAql-----------iGeAi~n-------------n~---- 243 (290)
T KOG3090|consen 192 AAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQL-----------IGEAIKN-------------NP---- 243 (290)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHH-----------HHHHHhC-------------Cc----
Confidence 9999999999998764 445666665556666655555544 4444332 33
Q ss_pred HHHHHHHHHHHHHHhc--cCCCcEEEecCCC
Q 023287 236 MVLITQYFDTMKEIGA--SSKSSSVFIPHGP 264 (284)
Q Consensus 236 ~~l~~~~l~~l~~~~~--~~~~~~i~~p~~~ 264 (284)
.++..|.+++-.+++. +++.|.++++.+.
T Consensus 244 ~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 244 AFITLRKIEAAREIAQTIASSANKVYLSSDD 274 (290)
T ss_pred cceeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence 4456678888777764 4577889999874
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9e-27 Score=190.01 Aligned_cols=231 Identities=18% Similarity=0.279 Sum_probs=190.9
Q ss_pred eeEEEecCCeEEEEeecCccc----eeeCCcceeecCCcceeEeeeeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcc
Q 023287 5 FCCVQVDQSTVAIRERFGKFD----EVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALA 80 (284)
Q Consensus 5 ~~~~~V~~ge~~Vv~~fG~~~----~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d 80 (284)
+++|.|+-|+++|+ |.++. .+.+.|.||.+||.++. +.+|.|.+..+++...-|||-+.|++...+.||...
T Consensus 25 s~ly~vdgg~ravi--fdrf~gv~~~vvgegthflipw~qk~--~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~ 100 (271)
T KOG3083|consen 25 SALYNVDGGHRAVI--FDRFRGVQDQVVGEGTHFLIPWVQKP--IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVV 100 (271)
T ss_pred hhhcccCCCceeEE--eecccchhhhcccCCceeeeeeccCc--EEEeccCCCcccccccCchhhhcccceEEEEecccc
Confidence 56799999999999 44444 37899999999997653 478889888888888999999999999999999877
Q ss_pred cchhhHhcccc-CHHH-HHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHH
Q 023287 81 KKASDAFYKLS-NTRT-QIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158 (284)
Q Consensus 81 ~~~~~~~~~~~-~~~~-~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 158 (284)
+..+..+.+++ ||++ .|.++....|++++++++..++++.|+.++..+++++.++...+|+.+++|.|+.++|..++.
T Consensus 101 sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt 180 (271)
T KOG3083|consen 101 SQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFT 180 (271)
T ss_pred cccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHH
Confidence 66667777776 8877 777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 023287 159 RAMNEINAAARLRVAA---NEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILD 235 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~---~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~ 235 (284)
+|++.++.|+|+.|++ ..+||.++++.++.||||++++.+.+++-|.+ + +
T Consensus 181 ~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~a-----------------------G----~ 233 (271)
T KOG3083|consen 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATA-----------------------G----D 233 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhc-----------------------C----C
Confidence 9999999999998875 46778888877888888777776655443211 1 2
Q ss_pred HHHHHHHHHHHHHHhc--cCCCcEEEecCCCCc
Q 023287 236 MVLITQYFDTMKEIGA--SSKSSSVFIPHGPGA 266 (284)
Q Consensus 236 ~~l~~~~l~~l~~~~~--~~~~~~i~~p~~~~~ 266 (284)
.++..+.+|+-++++. +.+.|+.|+|.+.+.
T Consensus 234 gLielrrlEAa~dia~~Ls~s~nv~YLp~g~s~ 266 (271)
T KOG3083|consen 234 GLIELRRLEAAEDIAYQLSRSRNVTYLPAGQSM 266 (271)
T ss_pred ceeeehhhhhHHHHHHHHhcCCCceeccCCcce
Confidence 3445567777777653 456889999976544
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=2.1e-22 Score=170.54 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=133.2
Q ss_pred ceeEEEecCCeEEEEeecCccceeeCCcceeecC----Ccce-------------eEeeeeceeEEEEecC-------CC
Q 023287 4 AFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPW----LLGC-------------QIAGDLSLRLQQLDVR-------CE 59 (284)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P----~~~~-------------~v~~~v~~r~~~~~~~-------~~ 59 (284)
++|.++|++||++|++++|++.++++||.|+.+| ++.. ..++.++++.+..... ..
T Consensus 13 ~~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd03408 13 NGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGR 92 (207)
T ss_pred cCCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeee
Confidence 5689999999999999999999999998887653 3211 1134677776665321 24
Q ss_pred cccCCCcEEEEEEEEEEEEcccchhhHhcccc---------CHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHH
Q 023287 60 TKTKDNVFVNVVASVQYRALAKKASDAFYKLS---------NTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAV 128 (284)
Q Consensus 60 v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~---------~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v 128 (284)
..|+|++++.+++.+.|||.| +.+++.++. +....|++.+++++|++++++++++++.+ |++|++.+
T Consensus 93 ~~~~~~v~v~v~~~~~~kI~D--p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 93 DSEFGGVPLRAFGTYSLKVTD--PVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCccceEEEEeeEEEEEEEcC--HHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 568899999999999999998 556765552 35568999999999999999999999986 99999999
Q ss_pred HHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHH
Q 023287 129 EEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (284)
Q Consensus 129 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 164 (284)
++.+...+.+||++|.+|.|++|+||+++.++|.++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999998764
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.86 E-value=6.8e-20 Score=150.68 Aligned_cols=190 Identities=15% Similarity=0.190 Sum_probs=149.8
Q ss_pred ceeEEEecCCeEEEEeecCccce-eeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEE-EEEEEcc
Q 023287 4 AFCCVQVDQSTVAIRERFGKFDE-VLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVAS-VQYRALA 80 (284)
Q Consensus 4 ~~~~~~V~~ge~~Vv~~fG~~~~-~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~-v~yrI~d 80 (284)
.+++..|++|++||.+|-|..-. +.+||+|+.+||+. .+ ..+.+..|+-++.. .+.|+.|+.+..|-. |.-+..+
T Consensus 20 ~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiT-t~-ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~ 97 (322)
T KOG2962|consen 20 SSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFIT-TY-KSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRP 97 (322)
T ss_pred HHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeee-ce-eeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhch
Confidence 45577899999999999998764 78999999999974 33 46777778877776 899999998877632 1122222
Q ss_pred cchhhHhcccc-CHHH-HHHHHHHHHHHHHcCCCcHHHHHhc-HHHHHHHHHHHHHHHHhhc--CeEEEEEEEeeccCCH
Q 023287 81 KKASDAFYKLS-NTRT-QIQAYVFDVIRASVPKLDLDDVFEQ-KNDIAKAVEEELEKAMSAY--GYEIVQTLIVDIEPDV 155 (284)
Q Consensus 81 ~~~~~~~~~~~-~~~~-~l~~~~~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 155 (284)
..++..+.++. ||++ +|-+-+.-.+.+.|+.+++.+++-+ -++|.+.++..|++++..+ |++|..|.++....|+
T Consensus 98 d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPE 177 (322)
T KOG2962|consen 98 DAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPE 177 (322)
T ss_pred hHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChH
Confidence 23455555665 7776 8999999999999999999999886 8999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 023287 156 HVKRAMNEINAAA--------RLRVAANEKAEAEKIVQIKRAEGEAESK 196 (284)
Q Consensus 156 ~~~~ai~~~~~A~--------~~~~a~~~~Ae~~~~~~~~~A~aeae~~ 196 (284)
.+...++. +.|| +.+.-.+.+||.++...+++|+-.|+..
T Consensus 178 aiRrN~E~-ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa 225 (322)
T KOG2962|consen 178 AIRRNFEL-MEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVA 225 (322)
T ss_pred HHHHhHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999873 3333 3334456778888888888877665533
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.83 E-value=4.1e-20 Score=143.99 Aligned_cols=119 Identities=22% Similarity=0.381 Sum_probs=106.6
Q ss_pred eeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcccchhhHhcccc-C-HHHHHHHHHHHHHHHHcCCCcHHHHHh-cHH
Q 023287 46 DLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLS-N-TRTQIQAYVFDVIRASVPKLDLDDVFE-QKN 122 (284)
Q Consensus 46 ~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~-~-~~~~l~~~~~~~lr~~i~~~~~~ei~~-~R~ 122 (284)
.+++|.++.+.+..++|+||.++.++++++|||.++++...+..++ + .+..|++.+++++|+++|+++++++++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 4678888888888999999999999999999998866555554443 3 344799999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHH
Q 023287 123 DIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (284)
Q Consensus 123 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 164 (284)
+|.+.+.+.+++.+.+|||.|.+|.|++++||+++.+||+++
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876
No 22
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.83 E-value=3.2e-18 Score=148.48 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=124.0
Q ss_pred EEEecCCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhh
Q 023287 7 CVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASD 85 (284)
Q Consensus 7 ~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~ 85 (284)
|++..+.+..+++.+|.-...+-+| .|.+|| ++ +.++|+.+.++++.. .+.|+.|+|+.|.+..+..|.-+++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w-q~--~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW-QQ--CTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee-ee--eeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 5677889999998888766556565 566678 43 458999999999887 599999999999999988875443322
Q ss_pred Hh--------ccc-cCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCH-
Q 023287 86 AF--------YKL-SNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDV- 155 (284)
Q Consensus 86 ~~--------~~~-~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 155 (284)
.+ .+. .+....+-..+.+..|.+++.+|++++|.+|.+|...+++-.+.++.++||.|.+.+|.|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 11 111 13344666778889999999999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHHHHHH
Q 023287 156 -HVKRAMNEINAA 167 (284)
Q Consensus 156 -~~~~ai~~~~~A 167 (284)
+|...+.+..+|
T Consensus 158 ~~YlssLGka~ta 170 (428)
T KOG2668|consen 158 HEYLSSLGKATTA 170 (428)
T ss_pred hHHHHHhhhHHHH
Confidence 687777754433
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.78 E-value=1.4e-18 Score=136.13 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=101.8
Q ss_pred eceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccc--hhhHhccc-----cCHHHHHHHHHHHHHHHHcCCCcHHHHH
Q 023287 47 LSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKK--ASDAFYKL-----SNTRTQIQAYVFDVIRASVPKLDLDDVF 118 (284)
Q Consensus 47 v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~--~~~~~~~~-----~~~~~~l~~~~~~~lr~~i~~~~~~ei~ 118 (284)
+++|.+.++++. .++|+|++++.++++++|||.|+. ....+.++ .+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578899999986 899999999999999999999954 11122111 2456689999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHH
Q 023287 119 EQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNE 163 (284)
Q Consensus 119 ~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~ 163 (284)
++|++|.+++.+.++..+++|||+|.+|.|++|+||+++.+++.+
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 999999999999999999999999999999999999998887643
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=4.4e-17 Score=151.45 Aligned_cols=187 Identities=20% Similarity=0.190 Sum_probs=144.9
Q ss_pred eEEEecCCeEEEEeec---------CccceeeCCcceeecCCcceeEeeeeceeEEEEecC-CCcccCCCcEEEEEEEEE
Q 023287 6 CCVQVDQSTVAIRERF---------GKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVR-CETKTKDNVFVNVVASVQ 75 (284)
Q Consensus 6 ~~~~V~~ge~~Vv~~f---------G~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~-~~v~TkD~~~v~v~~~v~ 75 (284)
.+|++.+...+++..+ |.-.+++.+|+||++|++++ ..++++++.++++. ..++|+||.++++++..+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~--~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQT--IERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceee--eEEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 4666444444444444 33447999999999998654 34899999999888 589999999999999999
Q ss_pred EEEccc--chhhHhccc--c----CHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEE
Q 023287 76 YRALAK--KASDAFYKL--S----NTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTL 147 (284)
Q Consensus 76 yrI~d~--~~~~~~~~~--~----~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~ 147 (284)
-+|.|. ++..+.-++ . +....+...+.+.+|.+++++++.+++.+|..|.+.+.+.+..+|++.|+.|+++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 999873 222232222 1 34457888899999999999999999999999999999999999999999999999
Q ss_pred EeeccCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 023287 148 IVDIEPD-------VHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAE 194 (284)
Q Consensus 148 I~~i~~p-------~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae 194 (284)
|.|+..+ ..|.++...+..++-.+.+.+.++|.++...+..++++.+
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~ 244 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRD 244 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhH
Confidence 9999988 8899999888777766666655555555555544444433
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.68 E-value=1.6e-15 Score=116.45 Aligned_cols=112 Identities=36% Similarity=0.560 Sum_probs=98.6
Q ss_pred EEEEecC-CCcccCCCcEEEEEEEEEEEEcccchhhHhccccCH--HHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHH
Q 023287 51 LQQLDVR-CETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNT--RTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKA 127 (284)
Q Consensus 51 ~~~~~~~-~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~--~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~ 127 (284)
..+.+.+ ..+.|+|+.++.+++++.|+|.|+. .+++...+. ...+.+.+.+++|++++.++++++.++|.+|.+.
T Consensus 6 ~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~ 83 (121)
T cd02106 6 RQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAE 83 (121)
T ss_pred eEEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHH
Confidence 3344444 3899999999999999999999954 455555443 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHH
Q 023287 128 VEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (284)
Q Consensus 128 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~ 164 (284)
+++.+...+.+||++|.+|.|.++.||+++.++++++
T Consensus 84 v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 84 VREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.48 E-value=4e-12 Score=107.41 Aligned_cols=159 Identities=17% Similarity=0.220 Sum_probs=120.6
Q ss_pred eeEEEecCCeEEEEeecCccceeeCCcceee----cCCcc-------------eeEeeeeceeEEE-Eec--CCCc--cc
Q 023287 5 FCCVQVDQSTVAIRERFGKFDEVLDPGCHCV----PWLLG-------------CQIAGDLSLRLQQ-LDV--RCET--KT 62 (284)
Q Consensus 5 ~~~~~V~~ge~~Vv~~fG~~~~~~~pG~~~~----~P~~~-------------~~v~~~v~~r~~~-~~~--~~~v--~T 62 (284)
.|-.+|++||++|..+-|++..+.+||.|-. +|++. +..+|.++++... ..+ +..+ ..
T Consensus 14 GS~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D 93 (211)
T PF13421_consen 14 GSQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRD 93 (211)
T ss_pred CCEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecC
Confidence 4678999999999999999999999999954 33221 1334677766542 122 2222 22
Q ss_pred CC--CcEEEEEEEEEEEEcccchhhHhccc---------cCHHHHHHHHHHHHHHHHcC--CCcHHHHHhcHHHHHHHHH
Q 023287 63 KD--NVFVNVVASVQYRALAKKASDAFYKL---------SNTRTQIQAYVFDVIRASVP--KLDLDDVFEQKNDIAKAVE 129 (284)
Q Consensus 63 kD--~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lr~~i~--~~~~~ei~~~R~~i~~~v~ 129 (284)
.+ .+++...+.+.|||.| |..++.++ .+..+++++.+.+.+.+.++ +.++.++-++-.+|++.++
T Consensus 94 ~~~~~v~lra~G~ys~rI~D--p~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 94 PEYGPVRLRAFGTYSFRIVD--PVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CCCCcEEEEEEEEEEEEEeC--HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 22 4567888888899999 44454332 23455788887777777776 5789999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHH
Q 023287 130 EELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEIN 165 (284)
Q Consensus 130 ~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~ 165 (284)
+.|+..++.+|++|+++.|.+|++|++++++++++.
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~~ 207 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKRA 207 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.01 E-value=1.1e-08 Score=87.40 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=117.1
Q ss_pred eEEEecCCeEEEEeecCccceeeC-Ccce-------------------eecCCcceeEeeeeceeEEE-EecC--CCccc
Q 023287 6 CCVQVDQSTVAIRERFGKFDEVLD-PGCH-------------------CVPWLLGCQIAGDLSLRLQQ-LDVR--CETKT 62 (284)
Q Consensus 6 ~~~~V~~ge~~Vv~~fG~~~~~~~-pG~~-------------------~~~P~~~~~v~~~v~~r~~~-~~~~--~~v~T 62 (284)
|..+|.|++-++...-|++..+.. +|.+ |..|+ +..+|.++++++. +.+. ..+.-
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~--k~eVyfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPF--KQEVYFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcc--cceEEEEecceecceecCCCCCeec
Confidence 678999999999999999987664 7765 11344 2335788888776 4443 23322
Q ss_pred C-----CCcEEEEEEEEEEEEcccchhhHh---------ccccCHHHHHHHHHHHHHHHHcCCC--cHHHHHhcHHHHHH
Q 023287 63 K-----DNVFVNVVASVQYRALAKKASDAF---------YKLSNTRTQIQAYVFDVIRASVPKL--DLDDVFEQKNDIAK 126 (284)
Q Consensus 63 k-----D~~~v~v~~~v~yrI~d~~~~~~~---------~~~~~~~~~l~~~~~~~lr~~i~~~--~~~ei~~~R~~i~~ 126 (284)
. .++++....+..|+|.||. .++ +.+.+..+++-+.+..+|...+.++ .+..+-++--+|++
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kvtDpi--~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk 195 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKVTDPI--LFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSK 195 (345)
T ss_pred ccccccceeEEeecceEEEEecCHH--HHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHH
Confidence 3 3578888999999999953 333 3334455667777777777777665 44555567889999
Q ss_pred HHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHH
Q 023287 127 AVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEIN 165 (284)
Q Consensus 127 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~ 165 (284)
.+.+.|.+.+..+|..|++|.|-+|++|++.+..|+.++
T Consensus 196 ~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 196 YMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 999999999999999999999999999999999999765
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.81 E-value=1.1e-06 Score=86.13 Aligned_cols=152 Identities=15% Similarity=0.128 Sum_probs=101.8
Q ss_pred EEecCCeEEEEeec--CccceeeCCcceeecCCcceeEeeeecee------EEE-----EecCC-------CcccCCCcE
Q 023287 8 VQVDQSTVAIRERF--GKFDEVLDPGCHCVPWLLGCQIAGDLSLR------LQQ-----LDVRC-------ETKTKDNVF 67 (284)
Q Consensus 8 ~~V~~ge~~Vv~~f--G~~~~~~~pG~~~~~P~~~~~v~~~v~~r------~~~-----~~~~~-------~v~TkD~~~ 67 (284)
|.||.+...=++-+ ++..-+.||-+.+.-|- +.+ ..+++. ... +.+.+ .+-|+|...
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~f-tvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEF-TVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC--Cce-EEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 55666665555443 44444778888888774 222 133221 111 11111 578999999
Q ss_pred EEEEEEEEEEEc----ccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHH-HHHHHHHHHHHH--------
Q 023287 68 VNVVASVQYRAL----AKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKN-DIAKAVEEELEK-------- 134 (284)
Q Consensus 68 v~v~~~v~yrI~----d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~-~i~~~v~~~l~~-------- 134 (284)
+.+..+++|... |+......|++.|+-.-+-..+.|.+|..++..++++++.+-. -|.+.|.-...+
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999998876 3333467899999999989999999999999999999998633 344444441221
Q ss_pred HHhhcCeEEEEEEEeeccCCH-HHHHHHH
Q 023287 135 AMSAYGYEIVQTLIVDIEPDV-HVKRAMN 162 (284)
Q Consensus 135 ~l~~~Gi~v~~v~I~~i~~p~-~~~~ai~ 162 (284)
.|...|+.|++|.|+++.|-+ ...+++.
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 245669999999999999753 3444444
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.25 E-value=0.00098 Score=57.60 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023287 180 AEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSE 223 (284)
Q Consensus 180 ~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~ 223 (284)
.++.+...+|+|++++.++.|+|++++.++.|+|++++....++
T Consensus 166 ~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ 209 (242)
T cd03405 166 RERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGE 209 (242)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455666666666666666666666666666665554443
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=96.82 E-value=0.034 Score=48.13 Aligned_cols=103 Identities=22% Similarity=0.242 Sum_probs=73.4
Q ss_pred ceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHH
Q 023287 48 SLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAK 126 (284)
Q Consensus 48 ~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~ 126 (284)
++....++.|. ....+||..+.+.+.|..|-+ ..+++- -...+..+...-++.+..+=+.-+-.+++.+-+.|+.
T Consensus 121 SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i~rLVG-GAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk 196 (316)
T PF12127_consen 121 SVNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---IDRLVG-GAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISK 196 (316)
T ss_pred ccCCeeecCcchhhhhcCCeEEEEEEEEEEEec---HHHhcc-CCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHH
Confidence 34445566665 668899999999999988865 333332 2345556666666777777777888999999888887
Q ss_pred HHHHHHHHHHhh-cCeEEEEEEEeeccCCHHH
Q 023287 127 AVEEELEKAMSA-YGYEIVQTLIVDIEPDVHV 157 (284)
Q Consensus 127 ~v~~~l~~~l~~-~Gi~v~~v~I~~i~~p~~~ 157 (284)
.+.+. -|+. --++|.++.|-|++..+.+
T Consensus 197 ~VL~k---gLDagTAFeIlSIDIaDidVG~NI 225 (316)
T PF12127_consen 197 TVLEK---GLDAGTAFEILSIDIADIDVGENI 225 (316)
T ss_pred HHHhh---CCCcCceeEEEEeeeeccccchhh
Confidence 77653 3333 3599999999999988743
No 31
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.62 E-value=0.0095 Score=53.75 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=15.1
Q ss_pred HHhhcchHHHHHHhcHHHHHHHHHHHHHHHHH
Q 023287 186 IKRAEGEAESKYLAGVGIARQRQAIVDGLRDS 217 (284)
Q Consensus 186 ~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a 217 (284)
..+++|++++.++.|+|++++.++.++|++++
T Consensus 227 ~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a 258 (317)
T TIGR01932 227 MHRSQGEEKAEEILGKAEYEVRKILSEAYRTA 258 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444544444444444444444433
No 32
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.55 E-value=0.012 Score=53.25 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=49.5
Q ss_pred EEEEeeccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023287 145 QTLIVDIEPDV-HVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSE 223 (284)
Q Consensus 145 ~v~I~~i~~p~-~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~ 223 (284)
.|.|.++.+.+ .+=..+.+.+. ...+||.++.+...+|+|++++.+++++|+.++.++.|+|++++....++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae 274 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE 274 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 36677776654 22233332222 23345666777788899999999999999999999889888877765554
No 33
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.51 E-value=0.013 Score=51.27 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHH---HhhcCeEEEEEEEeeccCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023287 124 IAKAVEEELEKA---MSAYGYEIVQTLIVDIEPDVHVKRAMNEIN-------AAARLRVAANEKAEAEKIVQIKRAEGEA 193 (284)
Q Consensus 124 i~~~v~~~l~~~---l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~-------~A~~~~~a~~~~Ae~~~~~~~~~A~aea 193 (284)
+.+.+.+.+... +.=..+.|.++.+-+ ..-+.+.+.+.... .|+.+++..+.+|++++++.+..|+|++
T Consensus 120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 333457788877664 33333444333322 3333455556678899989899999999
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHH
Q 023287 194 ESKYLAGVGIARQRQAIVDGLRDS 217 (284)
Q Consensus 194 e~~~~~Aea~a~~~~~~a~a~~~a 217 (284)
++.+++|+|+|++..+.+++...+
T Consensus 199 ~~~~~~a~g~a~~~~~~~~ay~~~ 222 (261)
T TIGR01933 199 ERRINRAKGDVARFTKLLAEYKKA 222 (261)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhC
Confidence 999999999999988888877644
No 34
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.42 E-value=0.016 Score=50.87 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhc-CeEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHH
Q 023287 127 AVEEELEKAMSAY-GYEIVQTLIVDIEPDV-HVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIA 204 (284)
Q Consensus 127 ~v~~~l~~~l~~~-Gi~v~~v~I~~i~~p~-~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a 204 (284)
.+.+.+.+.+... .-.=..+.|.++.+-+ .+-+.+.+.+.+ ...|+.++++.+.+|++++++.+.+|+++|
T Consensus 142 ~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea 214 (266)
T cd03404 142 EIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEA 214 (266)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 3444445455432 2111268899988753 334444444322 334555566677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 023287 205 RQRQAIVDGLRDSVLGFSEN 224 (284)
Q Consensus 205 ~~~~~~a~a~~~a~~~~~~a 224 (284)
++.++.|+|++++....+++
T Consensus 215 ~~~~~~A~a~~~~~~~~ae~ 234 (266)
T cd03404 215 ARIIQEAEAYKEEVIAEAQG 234 (266)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 99999999999988777664
No 35
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.40 E-value=0.017 Score=43.49 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=68.1
Q ss_pred CcccCCCcEEEEEEEEEEEEcc----cchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHH-HHHHHH---
Q 023287 59 ETKTKDNVFVNVVASVQYRALA----KKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDI-AKAVEE--- 130 (284)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~d----~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i-~~~v~~--- 130 (284)
.+-|+|-..+.+..+++|.-.- +.-....|++.|+-.-+-..+.+.+|..++..+.+++..+-..| .+.|.-
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 4679999999999888887642 22236789999999998999999999999999999999864333 222211
Q ss_pred --HHHH--HHhhcCeEEEEEEEeeccCC
Q 023287 131 --ELEK--AMSAYGYEIVQTLIVDIEPD 154 (284)
Q Consensus 131 --~l~~--~l~~~Gi~v~~v~I~~i~~p 154 (284)
.++. .+...|+.|++|.|+++.|-
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred CCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 1111 23455999999999998763
No 36
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=96.24 E-value=0.037 Score=51.71 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=17.3
Q ss_pred HHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 023287 182 KIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSV 218 (284)
Q Consensus 182 ~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~ 218 (284)
+++.+.+|++++...+-+|+++|++.+..|+|.+++.
T Consensus 261 ~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~ 297 (419)
T PRK10930 261 EQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQT 297 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445554444444444444433
No 37
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.24 E-value=0.015 Score=50.90 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc
Q 023287 176 EKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSEN 224 (284)
Q Consensus 176 ~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a 224 (284)
..|+.++.+.+.+|++++.+.+..|+|++++.++.|+|.+++....+++
T Consensus 153 ~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g 201 (262)
T cd03407 153 NAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADG 201 (262)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3455555555666666666666666666666666666666666666554
No 38
>PRK13665 hypothetical protein; Provisional
Probab=95.95 E-value=0.086 Score=45.49 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=69.2
Q ss_pred eceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHH
Q 023287 47 LSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIA 125 (284)
Q Consensus 47 v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~ 125 (284)
.++....++.|. ....|||..+.+.+.+..|-. ..+.+-+ ..-+..+-..-++.+..+=+.-+-.+++.+-+.|+
T Consensus 125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~rLVGG-AgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~IS 200 (316)
T PRK13665 125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDRLVGG-AGEETIIARVGEGIVSTIGSSESHKEVLENPDSIS 200 (316)
T ss_pred cccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHHHhCC-CcceeeEeeecCceeecccCcchHHHHhcCHHHHH
Confidence 344455666665 678899999999988888743 3233322 12233444444455555666778889999888888
Q ss_pred HHHHHHHHHHHhh-cCeEEEEEEEeeccCCHHH
Q 023287 126 KAVEEELEKAMSA-YGYEIVQTLIVDIEPDVHV 157 (284)
Q Consensus 126 ~~v~~~l~~~l~~-~Gi~v~~v~I~~i~~p~~~ 157 (284)
..+.+ +-|+. --++|.|+.|-|++..+.+
T Consensus 201 k~VL~---kGLDagTAFeIlSIDIADvdVG~NI 230 (316)
T PRK13665 201 KTVLS---KGLDAGTAFEILSIDIADVDVGKNI 230 (316)
T ss_pred HHHHh---ccCCcCceeEEEEEeeeccccchhh
Confidence 66544 34443 2599999999999988743
No 39
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=95.54 E-value=0.029 Score=48.21 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023287 164 INAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENV 225 (284)
Q Consensus 164 ~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~ 225 (284)
...+|-+++++|++||++++..+...+|.+......|.|+|++.+..|++-+....++...+
T Consensus 177 ilesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l 238 (301)
T KOG2620|consen 177 ILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDL 238 (301)
T ss_pred HhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHH
Confidence 33455566677777777777777777777766667777777776666666554444444433
No 40
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=1.1 Score=43.14 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=47.3
Q ss_pred cchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhc--------cCCCcEEEec
Q 023287 190 EGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGA--------SSKSSSVFIP 261 (284)
Q Consensus 190 ~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~--------~~~~~~i~~p 261 (284)
+++++++..++.++|++.+..|+|++++.+.+++++...+.... ..++...+++|+.+.. -+..+++.+|
T Consensus 412 ~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i~ 489 (548)
T COG2268 412 KAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVIG 489 (548)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEecC
Confidence 35677777777788888888888888888888888875544411 2233355666665532 1345666666
Q ss_pred CCCC
Q 023287 262 HGPG 265 (284)
Q Consensus 262 ~~~~ 265 (284)
...+
T Consensus 490 ~~~~ 493 (548)
T COG2268 490 GANG 493 (548)
T ss_pred Cccc
Confidence 5443
No 41
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=93.96 E-value=0.66 Score=37.42 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=62.6
Q ss_pred CcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcCeE
Q 023287 65 NVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYGYE 142 (284)
Q Consensus 65 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~ 142 (284)
+...-+.+.+.|++.|.... -.+.. =.+.+++.+...+++.+.+++.+ +++++..++++.++..+..=+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~---~el~~----~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALL---EELEE----KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHH---HHHHH----hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 66778889999999884322 11222 23456778899999999999987 599999999999999998866 8
Q ss_pred EEEEEEeecc
Q 023287 143 IVQTLIVDIE 152 (284)
Q Consensus 143 v~~v~I~~i~ 152 (284)
|.+|.++++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8888888764
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.55 Score=41.63 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc
Q 023287 173 AANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSEN 224 (284)
Q Consensus 173 a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a 224 (284)
.....||.++.+.+.+|++++++.+++|+|++++..+.++|.+++ +..+++
T Consensus 180 ~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 180 EKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 344567777777899999999999999999999999999999987 444444
No 43
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=88.00 E-value=1.4 Score=36.54 Aligned_cols=25 Identities=8% Similarity=-0.062 Sum_probs=19.8
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHH
Q 023287 193 AESKYLAGVGIARQRQAIVDGLRDS 217 (284)
Q Consensus 193 ae~~~~~Aea~a~~~~~~a~a~~~a 217 (284)
++....+|+++|++.+++|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 4445677888899999999998875
No 44
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=86.68 E-value=10 Score=27.48 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeec
Q 023287 99 AYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (284)
Q Consensus 99 ~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 151 (284)
+.+++.+...++.++.+++-+ +++.+.+++.+.+++.+.+ -.|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 467778888899999999986 6999999999999998854 33777777764
No 45
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=86.45 E-value=8 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHH
Q 023287 157 VKRAMNEINAA--ARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIAR 205 (284)
Q Consensus 157 ~~~ai~~~~~A--~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~ 205 (284)
+.+.|...... +++.+.-+.+|+.++...+..|+.+++.....|+.+++
T Consensus 8 l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 8 LINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 33344445555555555565666666555555554444
No 46
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=85.79 E-value=3.8 Score=34.28 Aligned_cols=8 Identities=0% Similarity=0.194 Sum_probs=3.9
Q ss_pred CcEEEecC
Q 023287 255 SSSVFIPH 262 (284)
Q Consensus 255 ~~~i~~p~ 262 (284)
.-.|++|.
T Consensus 120 ~~~I~~~~ 127 (198)
T PRK01558 120 KLEIILNE 127 (198)
T ss_pred CeeEEECH
Confidence 33455554
No 47
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.50 E-value=2.8 Score=37.85 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhc--
Q 023287 174 ANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGA-- 251 (284)
Q Consensus 174 ~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~-- 251 (284)
....||+++...+..|++||+..+...+|||.++.+.|.++++....-+.++..+.... .....|++|+.++.
T Consensus 294 ~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa-----~l~~lLealp~Ia~~i 368 (428)
T KOG2668|consen 294 ETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAA-----YLRTLLEALPMIAAEI 368 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHh
Confidence 34457777778888888888888888888888888888888887777777766443332 23457788887752
Q ss_pred ----cCCCcEEEecCC
Q 023287 252 ----SSKSSSVFIPHG 263 (284)
Q Consensus 252 ----~~~~~~i~~p~~ 263 (284)
.+-++..++..|
T Consensus 369 a~plaktnkI~v~s~g 384 (428)
T KOG2668|consen 369 AAPLAKTNKISVWSHG 384 (428)
T ss_pred ccchhhcCeEEEEecC
Confidence 123345555654
No 48
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.66 E-value=2.8 Score=33.14 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeec
Q 023287 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (284)
Q Consensus 100 ~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 151 (284)
.+++.+-..++..+.+++-+ +|+.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 56677777889999999987 6999999999999988876 4 6888888765
No 49
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=83.01 E-value=3.9 Score=32.14 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhc-C-eEEEEEEEeec
Q 023287 99 AYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 151 (284)
Q Consensus 99 ~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 151 (284)
+.+++.+-..++..+.+++.+ +|+.+.+++.+.++..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 457777888899999999977 69999999999999999764 3 24888888765
No 50
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=81.28 E-value=3 Score=35.02 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=14.9
Q ss_pred hhcchHHHHHHhcHHHHHHHHHHHHHHH
Q 023287 188 RAEGEAESKYLAGVGIARQRQAIVDGLR 215 (284)
Q Consensus 188 ~A~aeae~~~~~Aea~a~~~~~~a~a~~ 215 (284)
.|+.++++.+.+|+|++++.+++++|++
T Consensus 155 ~A~~~~~a~i~~A~ge~~a~~~~aea~~ 182 (215)
T cd03403 155 EAEREKRAKIIEAEGERQAAILLAEAAK 182 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 51
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.16 E-value=15 Score=30.16 Aligned_cols=38 Identities=24% Similarity=0.145 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023287 161 MNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYL 198 (284)
Q Consensus 161 i~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~ 198 (284)
|-.....+-+.++....++++++...+.+++++++..+
T Consensus 6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i 43 (188)
T PRK02292 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEI 43 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 52
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=80.60 E-value=34 Score=28.88 Aligned_cols=38 Identities=24% Similarity=0.095 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHH
Q 023287 170 LRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQR 207 (284)
Q Consensus 170 ~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~ 207 (284)
+.+.-+.+|+.++...+..|+.+++..+..|+.+++..
T Consensus 28 eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 28 EAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444444433
No 53
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=80.38 E-value=13 Score=28.19 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023287 160 AMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLA 199 (284)
Q Consensus 160 ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~ 199 (284)
-|..-+.|++++..-+..|+.++...+..|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777665543
No 54
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=80.28 E-value=23 Score=28.53 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcC--eEEEEEEEeec
Q 023287 100 YVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYG--YEIVQTLIVDI 151 (284)
Q Consensus 100 ~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G--i~v~~v~I~~i 151 (284)
.+++.+-..++..+.+++.+ ++..+.+++.+.+++.+..-+ -.|++|.++++
T Consensus 104 ~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 104 EVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 46667777789999999977 699999999999999987542 35888888765
No 55
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=79.70 E-value=20 Score=28.70 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 023287 236 MVLITQYFDTMK 247 (284)
Q Consensus 236 ~~l~~~~l~~l~ 247 (284)
..+..+|.+..+
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 556677777654
No 56
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.32 E-value=26 Score=28.84 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=55.8
Q ss_pred CcccCCC--cEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHH
Q 023287 59 ETKTKDN--VFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAM 136 (284)
Q Consensus 59 ~v~TkD~--~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l 136 (284)
.+.+.|. ....+.+++.|...++.+.. .+ +.=...++..+...++..+.+|+. ++.++.+++++.++..+
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~---EL----~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILN---EL----GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHH---HH----HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 4445554 34456777777776643211 11 122335666777888899999999 88999999999999887
Q ss_pred hhcCeEEEEEEEeecc
Q 023287 137 SAYGYEIVQTLIVDIE 152 (284)
Q Consensus 137 ~~~Gi~v~~v~I~~i~ 152 (284)
.+- .|.+|.++++.
T Consensus 164 ~~G--kV~~VYFTeFv 177 (181)
T PRK06654 164 RNG--EIKDIAFTQID 177 (181)
T ss_pred CCC--ceEEEEEEEEE
Confidence 752 36777776643
No 57
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.06 E-value=34 Score=27.78 Aligned_cols=54 Identities=7% Similarity=0.182 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhc-C-eEEEEEEEeec
Q 023287 98 QAYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAY-G-YEIVQTLIVDI 151 (284)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 151 (284)
.+.+++.+-.+++..+.+++.+ +++.+.+++.+.++..+... | -.|++|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 3457788888999999999986 69999999999999888764 3 25888888765
No 58
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=77.27 E-value=27 Score=25.90 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 023287 159 RAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAE 194 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae 194 (284)
+.|...-.|+.+.+..+..|+.++...+..|+.+++
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~ 38 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAK 38 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655555554444
No 59
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.38 E-value=7.8 Score=32.01 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeec
Q 023287 98 QAYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (284)
Q Consensus 98 ~~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 151 (284)
.+.+++.+-.+++..+.+|+.+ +|..+.+++.+.++..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 3457778888899999999987 6999999999999999976 3 5778887765
No 60
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=76.36 E-value=16 Score=30.84 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHH
Q 023287 166 AAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVG 202 (284)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea 202 (284)
.|+.+++.-+.+|+.++...+..|+.+++..+.+++.
T Consensus 35 eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s 71 (207)
T PRK01005 35 NAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555544444433
No 61
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=75.90 E-value=7.3 Score=31.61 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHh--cHHHHHHHHHHHHHHHHhhcCeEEEEEEEeec
Q 023287 99 AYVFDVIRASVPKLDLDDVFE--QKNDIAKAVEEELEKAMSAYGYEIVQTLIVDI 151 (284)
Q Consensus 99 ~~~~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 151 (284)
+.+++.+-..+++.+.+|+.+ ++..+.+++.+.++..+.+- .|++|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 456667777788999999987 69999999999999988763 3888888775
No 62
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=75.17 E-value=32 Score=25.75 Aligned_cols=34 Identities=32% Similarity=0.236 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 023287 160 AMNEINAAARLRVAANEKAEAEKIVQIKRAEGEA 193 (284)
Q Consensus 160 ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aea 193 (284)
.+...-.|+......+.+|+-++...+..|+.++
T Consensus 8 vl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~ea 41 (108)
T COG2811 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEA 41 (108)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443333333
No 63
>PLN03086 PRLI-interacting factor K; Provisional
Probab=71.97 E-value=12 Score=36.53 Aligned_cols=20 Identities=10% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHHHHHhccCCCcEEEecCC
Q 023287 241 QYFDTMKEIGASSKSSSVFIPHG 263 (284)
Q Consensus 241 ~~l~~l~~~~~~~~~~~i~~p~~ 263 (284)
+.++++.. .+++..|++|..
T Consensus 80 ~~~~~~~~---~~~GdKI~LPpS 99 (567)
T PLN03086 80 RIFEAVSF---QGNGDKIKLPPS 99 (567)
T ss_pred EEeecccc---CCCCCeEEcCHH
Confidence 34444443 468889999963
No 64
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=71.23 E-value=36 Score=25.77 Aligned_cols=44 Identities=9% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHH
Q 023287 171 RVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGL 214 (284)
Q Consensus 171 ~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~ 214 (284)
-......||.++...+..|+.........|+.+|+..+..-.+.
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~ 50 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQ 50 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888777777777777777666544333
No 65
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=70.76 E-value=24 Score=26.16 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=7.3
Q ss_pred HHHhhcchHHHHHHhcH
Q 023287 185 QIKRAEGEAESKYLAGV 201 (284)
Q Consensus 185 ~~~~A~aeae~~~~~Ae 201 (284)
.+..|+.+++..+..|.
T Consensus 44 ii~eA~~eA~~ile~Ak 60 (103)
T PRK08404 44 IIKKAEEEAQKLIEKKK 60 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 66
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=70.30 E-value=11 Score=27.88 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHH
Q 023287 161 MNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVG 202 (284)
Q Consensus 161 i~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea 202 (284)
|.....|+.++..-+.+|+.++...+..|+.+|+..+.....
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~ 47 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRA 47 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556676666666677777766666666666655544333
No 67
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=70.25 E-value=5.5 Score=33.76 Aligned_cols=24 Identities=4% Similarity=-0.127 Sum_probs=11.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHH
Q 023287 198 LAGVGIARQRQAIVDGLRDSVLGF 221 (284)
Q Consensus 198 ~~Aea~a~~~~~~a~a~~~a~~~~ 221 (284)
.+|+-+..+..+.|||++++++.+
T Consensus 201 eKAeQqk~aavIsAEGds~aA~li 224 (271)
T KOG3083|consen 201 EKAEQQKKAAVISAEGDSKAAELI 224 (271)
T ss_pred HHHhhhhhhheeecccchHHHHHH
Confidence 344444445555555555554444
No 68
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=68.27 E-value=45 Score=28.06 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=52.5
Q ss_pred CCcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHHHHHHHHH
Q 023287 58 CETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAVEEELEKA 135 (284)
Q Consensus 58 ~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~~l~~~ 135 (284)
.++.|+||..+.+-+.+.-+-. --......|+..+...+...++..++++++.. -+.|..++....+.-
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 3678999988887776543211 01245568999999999999999999999974 455555555544433
Q ss_pred HhhcCeEEEEEEE
Q 023287 136 MSAYGYEIVQTLI 148 (284)
Q Consensus 136 l~~~Gi~v~~v~I 148 (284)
.=-.-++|.-+.+
T Consensus 171 yPlr~veIrKvkv 183 (203)
T PRK04057 171 YPLRRVEIRKSKV 183 (203)
T ss_pred cCcceEEEEEEEE
Confidence 2212344444443
No 69
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=63.91 E-value=88 Score=26.27 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=4.4
Q ss_pred cHHHHHhcH
Q 023287 113 DLDDVFEQK 121 (284)
Q Consensus 113 ~~~ei~~~R 121 (284)
++..++.+|
T Consensus 72 Pi~~~L~~R 80 (205)
T PRK06231 72 PTQRFLNKR 80 (205)
T ss_pred HHHHHHHHH
Confidence 345555544
No 70
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=63.22 E-value=77 Score=25.36 Aligned_cols=9 Identities=0% Similarity=0.150 Sum_probs=4.9
Q ss_pred cHHHHHhcH
Q 023287 113 DLDDVFEQK 121 (284)
Q Consensus 113 ~~~ei~~~R 121 (284)
++..++.+|
T Consensus 32 pi~~~l~~R 40 (164)
T PRK14471 32 PILGAVKER 40 (164)
T ss_pred HHHHHHHHH
Confidence 455556654
No 71
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=63.22 E-value=90 Score=26.90 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHH
Q 023287 175 NEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQ 208 (284)
Q Consensus 175 ~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~ 208 (284)
..+|+..+...+..|+.++++.+..|+.+.+..+
T Consensus 81 ~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~ 114 (246)
T TIGR03321 81 KEEAQAERQRLLDEAREEADEIREKWQEALRREQ 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666665555555444333
No 72
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=62.42 E-value=78 Score=25.18 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.7
Q ss_pred HHHHHhcH
Q 023287 114 LDDVFEQK 121 (284)
Q Consensus 114 ~~ei~~~R 121 (284)
+..++..|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 44444444
No 73
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=62.21 E-value=30 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHH
Q 023287 174 ANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLR 215 (284)
Q Consensus 174 ~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~ 215 (284)
.+..||.++...+..|+.++...+..|..+|+..........
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~ 49 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEA 49 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777666666554444443
No 74
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=61.83 E-value=96 Score=26.04 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=9.6
Q ss_pred cHHHHHhcHH-HHHHHHHH
Q 023287 113 DLDDVFEQKN-DIAKAVEE 130 (284)
Q Consensus 113 ~~~ei~~~R~-~i~~~v~~ 130 (284)
++..++.+|. .|...+.+
T Consensus 77 pI~~vLe~R~~~I~~~L~~ 95 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQ 95 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667777653 34444433
No 75
>PRK15322 invasion protein OrgB; Provisional
Probab=61.75 E-value=96 Score=26.03 Aligned_cols=31 Identities=6% Similarity=0.253 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCcEEEecCCC
Q 023287 230 AKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGP 264 (284)
Q Consensus 230 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~i~~p~~~ 264 (284)
.|+++ ..+...|+-.++.. ...-.+++|.+.
T Consensus 91 ~pd~L-L~~le~Wl~~l~~~---~~pL~l~lP~~a 121 (210)
T PRK15322 91 HPETL-LTVLDEWLRDFDKP---EGQLFLTLPVNA 121 (210)
T ss_pred CHHHH-HHHHHHHHHhCccc---cCceeEecChhh
Confidence 35544 44555677766665 345667888765
No 76
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=59.80 E-value=1.1e+02 Score=26.44 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHhcHHHHH
Q 023287 175 NEKAEAEKIVQIKRAEGEAESKYLAGVGIAR 205 (284)
Q Consensus 175 ~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~ 205 (284)
..+|+.++...+..|+.++++.+..+..+.+
T Consensus 81 ~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie 111 (250)
T PRK14474 81 QEAADEQRQHLLNEAREDVATARDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666665555554433
No 77
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.90 E-value=1.2e+02 Score=26.05 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023287 171 RVAANEKAEAEKIVQIKRAEGEAESKYLAG 200 (284)
Q Consensus 171 ~~a~~~~Ae~~~~~~~~~A~aeae~~~~~A 200 (284)
++..+.+|+.+....+..|+.+.+..+..+
T Consensus 88 ~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a 117 (246)
T TIGR03321 88 RQRLLDEAREEADEIREKWQEALRREQAAL 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455554444444444444444433
No 78
>PTZ00491 major vault protein; Provisional
Probab=57.66 E-value=1.3e+02 Score=30.84 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=5.8
Q ss_pred EEEEEEEEcc
Q 023287 71 VASVQYRALA 80 (284)
Q Consensus 71 ~~~v~yrI~d 80 (284)
++...|.|.|
T Consensus 561 ~~~k~Fsv~D 570 (850)
T PTZ00491 561 DAQKCFSVPD 570 (850)
T ss_pred hHhheeccCc
Confidence 4445666665
No 79
>PRK09098 type III secretion system protein HrpB; Validated
Probab=56.85 E-value=62 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.065 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHH
Q 023287 170 LRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIA 204 (284)
Q Consensus 170 ~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a 204 (284)
+++..+.+|+.+++..+..|+.+|+..+..|+.+.
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665443
No 80
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=55.94 E-value=97 Score=24.23 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=6.2
Q ss_pred cHHHHHhcHHH
Q 023287 113 DLDDVFEQKND 123 (284)
Q Consensus 113 ~~~ei~~~R~~ 123 (284)
++..++.+|.+
T Consensus 31 Pi~~~l~~R~~ 41 (141)
T PRK08476 31 PLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHH
Confidence 45566666543
No 81
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=55.70 E-value=1.1e+02 Score=24.78 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=6.6
Q ss_pred CcHHHHHhcHH
Q 023287 112 LDLDDVFEQKN 122 (284)
Q Consensus 112 ~~~~ei~~~R~ 122 (284)
-++..++.+|.
T Consensus 41 kpi~~~l~~R~ 51 (175)
T PRK14472 41 GPILSALEERE 51 (175)
T ss_pred HHHHHHHHHHH
Confidence 34666777654
No 82
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=55.70 E-value=71 Score=22.56 Aligned_cols=30 Identities=30% Similarity=0.219 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 023287 166 AAARLRVAANEKAEAEKIVQIKRAEGEAES 195 (284)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~ 195 (284)
.++.+.+..+..|+.++...+..|+.+++.
T Consensus 6 ~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~ 35 (85)
T TIGR02926 6 KAEEDAEELIEEAEEERKQRIAEAREEARE 35 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444443
No 83
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.35 E-value=1.3e+02 Score=25.61 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=51.2
Q ss_pred CCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhh-cCe
Q 023287 63 KDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSA-YGY 141 (284)
Q Consensus 63 kD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~-~Gi 141 (284)
-||+.+.....+..|-. ..+.+-.. ..+..+...-...+..+=+...-.+++.+-+.|++.+.+ +-|+. -.+
T Consensus 141 m~gievkakaritvran---i~rlvgga-geetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gtaf 213 (328)
T COG4864 141 MNGIEVKAKARITVRAN---IERLVGGA-GEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGTAF 213 (328)
T ss_pred ccceEEEEEEEEEehhh---HHHHhCCC-CchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCcee
Confidence 46766655555544432 33333222 233344444444444444556677888888888776654 22322 358
Q ss_pred EEEEEEEeeccCCHHH
Q 023287 142 EIVQTLIVDIEPDVHV 157 (284)
Q Consensus 142 ~v~~v~I~~i~~p~~~ 157 (284)
+|.++.|-|++..+.+
T Consensus 214 eilsidiadvdigkni 229 (328)
T COG4864 214 EILSIDIADVDIGKNI 229 (328)
T ss_pred EEEEeeeecccccccc
Confidence 9999999999888754
No 84
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=55.31 E-value=1.1e+02 Score=24.63 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=8.6
Q ss_pred cHHHHHhcH-HHHHHHHH
Q 023287 113 DLDDVFEQK-NDIAKAVE 129 (284)
Q Consensus 113 ~~~ei~~~R-~~i~~~v~ 129 (284)
++..++..| +.|...+.
T Consensus 34 pi~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 34 ALAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666654 33444433
No 85
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=53.88 E-value=1.2e+02 Score=24.90 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=6.3
Q ss_pred cHHHHHhcHHH
Q 023287 113 DLDDVFEQKND 123 (284)
Q Consensus 113 ~~~ei~~~R~~ 123 (284)
++..++.+|..
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45666666543
No 86
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=53.80 E-value=1.4e+02 Score=25.28 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=53.1
Q ss_pred ecCCCcccCCCcEEEEEEEEE--EEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHHHH
Q 023287 55 DVRCETKTKDNVFVNVVASVQ--YRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAVEE 130 (284)
Q Consensus 55 ~~~~~v~TkD~~~v~v~~~v~--yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~ 130 (284)
+...++.|+||..+.|.+.+. +|+. ..-...|+......+.+..+..++++++.. -+.+..++.+
T Consensus 105 dai~dVkTkDGy~~RV~~~~~T~~ra~-----------tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~ 173 (214)
T COG1890 105 DAIVDVKTKDGYVLRVKAMAFTRRRAK-----------TSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEE 173 (214)
T ss_pred eeEEEEEecCCcEEEEEEEEEEehhcc-----------cchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHH
Confidence 333478999998888777653 2221 134568999999999999999999999873 3445555444
Q ss_pred HHHHHHhhcCeEEEEEEEe
Q 023287 131 ELEKAMSAYGYEIVQTLIV 149 (284)
Q Consensus 131 ~l~~~l~~~Gi~v~~v~I~ 149 (284)
.-++..==.-++|.-+.+.
T Consensus 174 ~akkIyPLr~veIrK~kvl 192 (214)
T COG1890 174 AAKKIYPLRKVEIRKSKVL 192 (214)
T ss_pred HhhhcccchheEEEeeeee
Confidence 4333211113455554443
No 87
>PRK09098 type III secretion system protein HrpB; Validated
Probab=53.71 E-value=62 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 023287 168 ARLRVAANEKAEAEKIVQIKRAEGEAES 195 (284)
Q Consensus 168 ~~~~~a~~~~Ae~~~~~~~~~A~aeae~ 195 (284)
+.+.+.-+.+|+.++...+..|+.+.+.
T Consensus 49 r~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 49 RARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555455444443
No 88
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=53.32 E-value=1.2e+02 Score=24.55 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=6.5
Q ss_pred CcHHHHHhcHH
Q 023287 112 LDLDDVFEQKN 122 (284)
Q Consensus 112 ~~~~ei~~~R~ 122 (284)
-++..++..|.
T Consensus 41 ~pi~~~l~~R~ 51 (173)
T PRK13453 41 GPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHH
Confidence 35666666653
No 89
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=53.30 E-value=1.2e+02 Score=24.31 Aligned_cols=10 Identities=0% Similarity=0.298 Sum_probs=5.6
Q ss_pred cHHHHHhcHH
Q 023287 113 DLDDVFEQKN 122 (284)
Q Consensus 113 ~~~ei~~~R~ 122 (284)
++..++..|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14473 32 PVLNLLNERT 41 (164)
T ss_pred HHHHHHHHHH
Confidence 4556666553
No 90
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=52.68 E-value=90 Score=24.79 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=5.6
Q ss_pred cHHHHHhcHH
Q 023287 113 DLDDVFEQKN 122 (284)
Q Consensus 113 ~~~ei~~~R~ 122 (284)
++..++..|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 4566666543
No 91
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=52.46 E-value=76 Score=23.78 Aligned_cols=31 Identities=32% Similarity=0.226 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 023287 164 INAAARLRVAANEKAEAEKIVQIKRAEGEAE 194 (284)
Q Consensus 164 ~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae 194 (284)
...|+.+++..+..|+.++...+..|+.+++
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~ 53 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAE 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777776666655555554
No 92
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.41 E-value=35 Score=29.13 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCeEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHH
Q 023287 126 KAVEEELEKAMSAYGYEIVQTLIVDIEPDV-HVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIA 204 (284)
Q Consensus 126 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a 204 (284)
+.+...+.+.|.+.--.. ++-+.|+++.. .+-.-+.....|+|-... +|+. +.-.+.+|+.|....+.+|++||
T Consensus 155 e~VSrliRk~L~eRA~~F-ni~LDDVSiT~l~F~~efTaAiEaKQvA~Q---eAqR-A~F~VekA~qek~~~ivrAqGEa 229 (290)
T KOG3090|consen 155 EQVSRLIRKILTERAADF-NIALDDVSITELTFGKEFTAAIEAKQVAAQ---EAQR-AKFIVEKAEQEKQSAIVRAQGEA 229 (290)
T ss_pred HHHHHHHHHHHHHHHhcc-ceEeecceeeeeecCHHHHHHHHHHHHHHH---HHhh-hhhhhHHHHHhhhhhhhhhccch
Confidence 345555555555543332 34455666554 223333333333332221 1111 11134456666655555555443
No 93
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=51.00 E-value=55 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.125 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023287 170 LRVAANEKAEAEKIVQIKRAEGEAESKYL 198 (284)
Q Consensus 170 ~~~a~~~~Ae~~~~~~~~~A~aeae~~~~ 198 (284)
+.+.-+..|+.++...+..|+.+++..+.
T Consensus 31 ~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 31 QAREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555554444
No 94
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=50.73 E-value=1.3e+02 Score=24.23 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=9.9
Q ss_pred CCCcHHHHHhcHH-HHHHHHH
Q 023287 110 PKLDLDDVFEQKN-DIAKAVE 129 (284)
Q Consensus 110 ~~~~~~ei~~~R~-~i~~~v~ 129 (284)
.--++..++.+|. .|.+.+.
T Consensus 43 l~kPi~~~l~~R~~~I~~~l~ 63 (167)
T PRK08475 43 AAKPLKNFYKSRINKISKRLE 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666653 3444433
No 95
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.58 E-value=1.4e+02 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=12.5
Q ss_pred cCCCcHHHHHhcHH-HHHHHHHH
Q 023287 109 VPKLDLDDVFEQKN-DIAKAVEE 130 (284)
Q Consensus 109 i~~~~~~ei~~~R~-~i~~~v~~ 130 (284)
+.--++..++.+|. .|...+.+
T Consensus 44 fl~kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 44 FGKGVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHH
Confidence 34467788888753 44444443
No 96
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=50.12 E-value=1.6e+02 Score=27.97 Aligned_cols=14 Identities=7% Similarity=0.465 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 023287 236 MVLITQYFDTMKEI 249 (284)
Q Consensus 236 ~~l~~~~l~~l~~~ 249 (284)
..+..++++.+..+
T Consensus 144 ~~lId~~i~~l~~~ 157 (445)
T PRK13428 144 SATVDRFLDELDAM 157 (445)
T ss_pred HHHHHHHHHHhhcc
Confidence 45567788888777
No 97
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=50.09 E-value=1.4e+02 Score=24.20 Aligned_cols=17 Identities=0% Similarity=0.157 Sum_probs=9.0
Q ss_pred CcHHHHHhcHH-HHHHHH
Q 023287 112 LDLDDVFEQKN-DIAKAV 128 (284)
Q Consensus 112 ~~~~ei~~~R~-~i~~~v 128 (284)
-++..++..|. .|...+
T Consensus 39 kpi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 39 DVILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 35667777653 344333
No 98
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=49.93 E-value=1.3e+02 Score=23.88 Aligned_cols=8 Identities=0% Similarity=0.351 Sum_probs=4.0
Q ss_pred HHHHHhcH
Q 023287 114 LDDVFEQK 121 (284)
Q Consensus 114 ~~ei~~~R 121 (284)
+..++..|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 45555544
No 99
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=49.53 E-value=1.4e+02 Score=24.33 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.1
Q ss_pred hcchHH
Q 023287 189 AEGEAE 194 (284)
Q Consensus 189 A~aeae 194 (284)
|+.+++
T Consensus 114 A~~ea~ 119 (184)
T CHL00019 114 AKEDLE 119 (184)
T ss_pred HHHHHH
Confidence 333333
No 100
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=49.25 E-value=37 Score=30.10 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCeE-EEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhcchHHHH
Q 023287 127 AVEEELEKAMSAYGYE-IVQTLIVDIEPDV-HVKRAMNEINAAARLRVAANEKAEAEKI--------VQIKRAEGEAESK 196 (284)
Q Consensus 127 ~v~~~l~~~l~~~Gi~-v~~v~I~~i~~p~-~~~~ai~~~~~A~~~~~a~~~~Ae~~~~--------~~~~~A~aeae~~ 196 (284)
.+...+.+.+.+.=-. =..+.|.++.+-+ ++=+.+.+.. .+.+||.++. +...+||+++.+.
T Consensus 125 ~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af--------erM~aER~k~~~~~~~~~~~~~~ae~~~~~~ 196 (280)
T cd03406 125 QIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY--------ELMEAEKTKLLIAIQKQKVVEKEAETERKKA 196 (280)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH--------HHHHHHHHhhhhccchhHHHHHHhhHHHHHH
Confidence 4555555555543111 1278888887643 3444443322 1233444444 7778888888888
Q ss_pred HHhcHHHHHHHHH
Q 023287 197 YLAGVGIARQRQA 209 (284)
Q Consensus 197 ~~~Aea~a~~~~~ 209 (284)
.++|+++|.-..+
T Consensus 197 ~~~a~~~~~~~~~ 209 (280)
T cd03406 197 VIEAEKVAQVAKI 209 (280)
T ss_pred HHHHHHHhhHHHH
Confidence 8888888765443
No 101
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=48.57 E-value=81 Score=26.31 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=49.1
Q ss_pred CcccCCCcEEEEEEEEEEEEcccchhhHhcccc-CHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHHHHHHHHH
Q 023287 59 ETKTKDNVFVNVVASVQYRALAKKASDAFYKLS-NTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAVEEELEKA 135 (284)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~-~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~~l~~~ 135 (284)
++.|+||..+.+-+.+.-+=. .. .....|+..+...+.+.++..++++++.. -+.+..++. +.
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r----------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~----k~ 172 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR----------AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIE----KA 172 (194)
T ss_dssp EEEETTTEEEEEEEEEEE--------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHH----HH
T ss_pred EEEcCCCcEEEEEEEEEEeec----------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHH----HH
Confidence 678999988766655432111 22 34458999999999999999999999974 444544444 44
Q ss_pred HhhcCeEEEEEEEeec
Q 023287 136 MSAYGYEIVQTLIVDI 151 (284)
Q Consensus 136 l~~~Gi~v~~v~I~~i 151 (284)
+.+. +-+.+|.|+.+
T Consensus 173 ~k~I-yPl~~v~IrKv 187 (194)
T PF01015_consen 173 CKKI-YPLRNVEIRKV 187 (194)
T ss_dssp HCTT---EEEEEEEEE
T ss_pred hccc-cccceEEEEEE
Confidence 4443 33445555543
No 102
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=48.46 E-value=1.4e+02 Score=23.83 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023287 157 VKRAMN 162 (284)
Q Consensus 157 ~~~ai~ 162 (284)
+...|+
T Consensus 33 i~~~l~ 38 (164)
T PRK14471 33 ILGAVK 38 (164)
T ss_pred HHHHHH
Confidence 333333
No 103
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=44.28 E-value=1.8e+02 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 023287 166 AAARLRVAANEKAEAEKIVQIKRA 189 (284)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~~~A 189 (284)
.|+++++.-+..|+.+++..+..|
T Consensus 38 ~A~~qA~~Il~~Ae~eAe~l~~~a 61 (191)
T PF06188_consen 38 DARQQAEQILQQAEEEAEALLEQA 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666665555533
No 104
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=44.22 E-value=1.3e+02 Score=26.43 Aligned_cols=39 Identities=15% Similarity=0.000 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023287 162 NEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAG 200 (284)
Q Consensus 162 ~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~A 200 (284)
.....+..+.+.-+.+|+.+....+..|+.+++..+..|
T Consensus 81 ~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a 119 (281)
T PRK06669 81 EELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEA 119 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555554444433
No 105
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=43.77 E-value=2.9e+02 Score=26.20 Aligned_cols=8 Identities=0% Similarity=0.297 Sum_probs=4.3
Q ss_pred HHHHHhcH
Q 023287 114 LDDVFEQK 121 (284)
Q Consensus 114 ~~ei~~~R 121 (284)
+..++.+|
T Consensus 26 i~~~l~~R 33 (445)
T PRK13428 26 VRRLMAAR 33 (445)
T ss_pred HHHHHHHH
Confidence 45555554
No 106
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=43.13 E-value=2.6e+02 Score=28.01 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHH-HHhhcCeEEEEEE----EeeccCCHHHHHHHHHHH
Q 023287 129 EEELEK-AMSAYGYEIVQTL----IVDIEPDVHVKRAMNEIN 165 (284)
Q Consensus 129 ~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~~~~ai~~~~ 165 (284)
.+.|+. .|...||.|++-. +-....|.++.+..+++.
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~ 561 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKE 561 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHH
Confidence 445666 5888899998842 222334455555555443
No 107
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=42.70 E-value=1.8e+02 Score=23.48 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=11.7
Q ss_pred cCCCcHHHHHhcHH-HHHHHHH
Q 023287 109 VPKLDLDDVFEQKN-DIAKAVE 129 (284)
Q Consensus 109 i~~~~~~ei~~~R~-~i~~~v~ 129 (284)
+.-.++..++.+|. .|.+.+.
T Consensus 39 fl~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 39 FGRGFLGKILEERREAILQALK 60 (174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 44455778888754 3444333
No 108
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.52 E-value=1.6e+02 Score=22.71 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=4.0
Q ss_pred HHHHHhcH
Q 023287 114 LDDVFEQK 121 (284)
Q Consensus 114 ~~ei~~~R 121 (284)
+..++.+|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 45555544
No 109
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=42.30 E-value=1.7e+02 Score=23.15 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHhc
Q 023287 175 NEKAEAEKIVQIKRAEGEAESKYLAG 200 (284)
Q Consensus 175 ~~~Ae~~~~~~~~~A~aeae~~~~~A 200 (284)
...|+.++...+..|+.+++..+..+
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a 88 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEA 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333
No 110
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=41.03 E-value=1.8e+02 Score=22.87 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=4.5
Q ss_pred cHHHHHhcH
Q 023287 113 DLDDVFEQK 121 (284)
Q Consensus 113 ~~~ei~~~R 121 (284)
++..++.+|
T Consensus 28 pi~~~l~~R 36 (156)
T PRK05759 28 PIMKALEER 36 (156)
T ss_pred HHHHHHHHH
Confidence 345555554
No 111
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.63 E-value=2.5e+02 Score=30.15 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=13.5
Q ss_pred EecCCCCcHhhHHHHHHHHH
Q 023287 259 FIPHGPGAVQDIATQIRNGL 278 (284)
Q Consensus 259 ~~p~~~~~~~~~~~~~~~~~ 278 (284)
-+|..+..+..+.++|.-.+
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 46777777777777776544
No 112
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=37.83 E-value=2.4e+02 Score=23.50 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=12.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 023287 194 ESKYLAGVGIARQRQAIVDGLRDSVLG 220 (284)
Q Consensus 194 e~~~~~Aea~a~~~~~~a~a~~~a~~~ 220 (284)
....+.+.|..++++...++..+.++.
T Consensus 59 ~~~~iis~A~le~r~~~Le~~ee~l~~ 85 (194)
T COG1390 59 ERQRIISSALLEARRKLLEAKEEILES 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 113
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=37.26 E-value=2.9e+02 Score=24.25 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023287 244 DTMKEI 249 (284)
Q Consensus 244 ~~l~~~ 249 (284)
++|..+
T Consensus 197 ~al~~l 202 (281)
T PRK06669 197 ELLKEV 202 (281)
T ss_pred HHHHHc
Confidence 333333
No 114
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=36.44 E-value=2.4e+02 Score=23.06 Aligned_cols=8 Identities=38% Similarity=0.210 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023287 177 KAEAEKIV 184 (284)
Q Consensus 177 ~Ae~~~~~ 184 (284)
.|+.++..
T Consensus 94 ~Ar~EA~~ 101 (181)
T PRK13454 94 DARAEAQR 101 (181)
T ss_pred HHHHHHHH
Confidence 33333333
No 115
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.86 E-value=2e+02 Score=22.07 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023287 157 VKRAMN 162 (284)
Q Consensus 157 ~~~ai~ 162 (284)
+.+.|+
T Consensus 30 i~~~l~ 35 (140)
T PRK07353 30 VGKVVE 35 (140)
T ss_pred HHHHHH
Confidence 333333
No 116
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.49 E-value=2.4e+02 Score=22.93 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=9.3
Q ss_pred cHHHHHhcHH-HHHHHHH
Q 023287 113 DLDDVFEQKN-DIAKAVE 129 (284)
Q Consensus 113 ~~~ei~~~R~-~i~~~v~ 129 (284)
.+..++.+|. .|...+.
T Consensus 51 ~v~~~L~~R~~~I~~~l~ 68 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELE 68 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3577777654 3444333
No 117
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=3.9e+02 Score=25.46 Aligned_cols=11 Identities=0% Similarity=0.250 Sum_probs=6.7
Q ss_pred HHHHHHHHHHh
Q 023287 240 TQYFDTMKEIG 250 (284)
Q Consensus 240 ~~~l~~l~~~~ 250 (284)
++|++++...+
T Consensus 254 ekwl~aInTtf 264 (630)
T KOG0742|consen 254 EKWLEAINTTF 264 (630)
T ss_pred HHHHHHHhhhH
Confidence 45777666554
No 118
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=32.27 E-value=39 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhcCeEEEEEEEeeccCCH
Q 023287 125 AKAVEEELEKAMSAYGYEIVQTLIVDIEPDV 155 (284)
Q Consensus 125 ~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 155 (284)
.-++++.|.+.|.++|++|.++.-.+.++|+
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 3467888899999999999998866667776
No 119
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=32.24 E-value=3.4e+02 Score=23.53 Aligned_cols=29 Identities=10% Similarity=-0.045 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023287 171 RVAANEKAEAEKIVQIKRAEGEAESKYLA 199 (284)
Q Consensus 171 ~~a~~~~Ae~~~~~~~~~A~aeae~~~~~ 199 (284)
++..+.+|+.+....+..|+.+.+..+..
T Consensus 88 ~~~il~~A~~ea~~~~~~a~~~ie~Ek~~ 116 (250)
T PRK14474 88 RQHLLNEAREDVATARDEWLEQLEREKQE 116 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 120
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=29.25 E-value=1e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhc-CeEEEEEEEe
Q 023287 125 AKAVEEELEKAMSAY-GYEIVQTLIV 149 (284)
Q Consensus 125 ~~~v~~~l~~~l~~~-Gi~v~~v~I~ 149 (284)
.+++++.+.+.+..+ |+.+.+|+|.
T Consensus 78 ~~~iq~~V~~~v~~~tg~~v~~V~V~ 103 (108)
T PF03780_consen 78 AEEIQEKVKEAVEEMTGIEVSEVNVH 103 (108)
T ss_pred HHHHHHHHHHHHHHHHCCeeEEEEEE
Confidence 344555555555555 7777666543
No 121
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=29.23 E-value=2.4e+02 Score=21.01 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023287 161 MNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYL 198 (284)
Q Consensus 161 i~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~ 198 (284)
|..-.+||.+....+.+|+..+...+..|+-||+..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665555666666666666666666655443
No 122
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.91 E-value=2.5e+02 Score=21.02 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 023287 174 ANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEI 249 (284)
Q Consensus 174 ~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~ 249 (284)
+..++++++++.....+-.+|-.++...|+.....--=++..-||.++..-+.++-++++ +..+|..+-+++
T Consensus 25 ~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp~~de~----i~tmW~TSrqqi 96 (109)
T PHA02571 25 ARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQPYTDEL----IETMWETSRQQI 96 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCcHHH----HHHHHHHHHHHH
Confidence 345566677777777788888888888887666665566777888888888876555444 444566554443
No 123
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=28.66 E-value=3.1e+02 Score=21.94 Aligned_cols=9 Identities=0% Similarity=0.291 Sum_probs=4.1
Q ss_pred cHHHHHhcH
Q 023287 113 DLDDVFEQK 121 (284)
Q Consensus 113 ~~~ei~~~R 121 (284)
++..++.+|
T Consensus 30 pi~~~l~~R 38 (161)
T COG0711 30 PILKALDER 38 (161)
T ss_pred HHHHHHHHH
Confidence 444445543
No 124
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=26.46 E-value=2.7e+02 Score=20.75 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHH
Q 023287 173 AANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGL 214 (284)
Q Consensus 173 a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~ 214 (284)
.....||-++...+..|+-..-+..-.|.-+|......-...
T Consensus 9 qQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~q 50 (108)
T KOG1772|consen 9 QQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQ 50 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655555555655555554444333
No 125
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.83 E-value=23 Score=27.06 Aligned_cols=23 Identities=35% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcchHHHHHHhc
Q 023287 178 AEAEKIVQIKRAEGEAESKYLAG 200 (284)
Q Consensus 178 Ae~~~~~~~~~A~aeae~~~~~A 200 (284)
|+.++...+..|+.+++..+..|
T Consensus 83 A~~eA~~i~~~A~~~a~~i~~~A 105 (131)
T PF05103_consen 83 AEEEAEEIIEEAQKEAEEIIEEA 105 (131)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333443333333333
No 126
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=24.98 E-value=1e+02 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=27.6
Q ss_pred EEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHH
Q 023287 71 VASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVE 129 (284)
Q Consensus 71 ~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~ 129 (284)
.+.|.||+.+|++ .+. +.+. +-+.++++-++.++..|.+++.+..
T Consensus 94 TG~v~WR~rpPSv--~vr---gvea---------V~e~L~rmgf~rFiRTk~EinKeAi 138 (170)
T COG4396 94 TGLVKWRIRPPSV--KVR---GVEA---------VLEWLSRMGFARFIRTKKEINKEAI 138 (170)
T ss_pred eeeEEEeecCCcc--eec---cHHH---------HHHHHHHhhHHHHHHhHHHhcHHHH
Confidence 5679999999653 222 3222 2233456677788877777766543
No 127
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=24.30 E-value=3.7e+02 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhcchHH
Q 023287 176 EKAEAEKIVQIKRAEGEAE 194 (284)
Q Consensus 176 ~~Ae~~~~~~~~~A~aeae 194 (284)
..|+.++...+..|+.+++
T Consensus 66 ~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 66 KKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 128
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=23.25 E-value=1.9e+02 Score=24.98 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.4
Q ss_pred EEEEEE
Q 023287 142 EIVQTL 147 (284)
Q Consensus 142 ~v~~v~ 147 (284)
.|..|.
T Consensus 21 ~~~~~~ 26 (255)
T TIGR03825 21 PLRQVT 26 (255)
T ss_pred eeeeec
Confidence 344443
No 129
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.23 E-value=74 Score=25.15 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhcCeEEEEEEE---eeccCCH
Q 023287 125 AKAVEEELEKAMSAYGYEIVQTLI---VDIEPDV 155 (284)
Q Consensus 125 ~~~v~~~l~~~l~~~Gi~v~~v~I---~~i~~p~ 155 (284)
.-++++.|.+.|.++|.+|.++.- ..+++|+
T Consensus 10 G~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 43 (143)
T TIGR01120 10 GFILKEEIKAFLVERGVKVIDKGTWSSERTDYPH 43 (143)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHH
Confidence 356788899999999999999875 3355554
No 130
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=20.55 E-value=4.8e+02 Score=21.32 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH----HHHHhcHHHHHHHHHHHHHHH--HHHHHHhhcCCCCChhhHHH
Q 023287 162 NEINAAARLRVAANEKAEAEKIVQIKRAEGEAE----SKYLAGVGIARQRQAIVDGLR--DSVLGFSENVPGTTAKDILD 235 (284)
Q Consensus 162 ~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae----~~~~~Aea~a~~~~~~a~a~~--~a~~~~~~a~~~~~~~~~~~ 235 (284)
+.+..|+...+....+|+.++...+.+|+.+++ .....++-+.+..+..++-+- +.+....+.+..+.+.+. .
T Consensus 25 ~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~~Y-~ 103 (198)
T PRK03963 25 EAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDEY-F 103 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-H
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEecCCCC
Q 023287 236 MVLITQYFDTMKEIGASSKSSSVFIPHGPG 265 (284)
Q Consensus 236 ~~l~~~~l~~l~~~~~~~~~~~i~~p~~~~ 265 (284)
-++.....+++..+ +++.+++-..+.+
T Consensus 104 ~~l~~li~~a~~~l---~~~~i~i~~~~~D 130 (198)
T PRK03963 104 ETLKALTKEAVEEL---GEDKVVVRSNERT 130 (198)
T ss_pred HHHHHHHHHHHHHh---CCCcEEEEEcccc
No 131
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=20.43 E-value=2.8e+02 Score=21.75 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCeEEEEEEEeecc
Q 023287 126 KAVEEELEKAMSAYGYEIVQTLIVDIE 152 (284)
Q Consensus 126 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~ 152 (284)
-.+++.|.+.|.++|.+|.++...+-+
T Consensus 11 ~~lK~~i~~~L~~~g~eV~D~G~~~~~ 37 (140)
T PF02502_consen 11 FELKEAIKEYLEEKGYEVIDFGTYSED 37 (140)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESESSTS
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 467888889999999999999988744
No 132
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=3.6e+02 Score=26.13 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=6.8
Q ss_pred HhhcCeEEEEE
Q 023287 136 MSAYGYEIVQT 146 (284)
Q Consensus 136 l~~~Gi~v~~v 146 (284)
|..+|+.+++-
T Consensus 504 l~~~g~~led~ 514 (586)
T KOG2007|consen 504 LLELGVRLEDR 514 (586)
T ss_pred HHHhhhHHHhC
Confidence 45677766653
No 133
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=20.25 E-value=4.5e+02 Score=22.30 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 023287 173 AANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLG 220 (284)
Q Consensus 173 a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~ 220 (284)
+.+..|.......+..|...|+..+..|+.+..+.+..++-+++.+..
T Consensus 34 ~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~ 81 (224)
T PRK15354 34 AQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRK 81 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>PRK06328 type III secretion system protein; Validated
Probab=20.13 E-value=2.9e+02 Score=23.50 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.4
Q ss_pred HHHHHH
Q 023287 244 DTMKEI 249 (284)
Q Consensus 244 ~~l~~~ 249 (284)
++|..+
T Consensus 123 ~aL~~l 128 (223)
T PRK06328 123 NSLKEL 128 (223)
T ss_pred HHHHhc
Confidence 334443
Done!