Query 023287
Match_columns 284
No_of_seqs 189 out of 1690
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 04:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 3.7E-30 1.3E-34 213.7 16.5 173 45-255 7-180 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.3E-27 4.4E-32 187.2 12.1 130 34-167 3-133 (133)
3 2rpb_A Hypothetical membrane p 99.9 3.7E-22 1.3E-26 151.9 9.4 110 45-156 3-113 (113)
4 1win_A Flotillin 2; BAND 7 dom 99.9 6.9E-23 2.4E-27 162.3 3.6 124 45-168 8-139 (143)
5 2zuo_A MVP, major vault protei 98.9 2.9E-07 9.9E-12 88.8 24.5 146 7-155 459-647 (861)
6 2zuo_A MVP, major vault protei 83.8 8.8 0.0003 37.6 11.1 26 137-162 634-659 (861)
7 3bk6_A PH stomatin; archaea, t 79.1 2.2 7.7E-05 33.9 4.6 25 200-224 128-152 (188)
8 3v6i_A V-type ATP synthase sub 70.4 13 0.00043 29.5 6.9 21 175-195 19-39 (187)
9 3v6i_A V-type ATP synthase sub 67.4 43 0.0015 26.2 10.2 10 240-249 105-114 (187)
10 3v6i_B V-type ATP synthase, su 67.3 24 0.00083 25.0 6.8 19 168-186 26-44 (105)
11 2kk7_A V-type ATP synthase sub 65.8 10 0.00034 23.5 4.2 23 179-201 20-42 (52)
12 2xzm_4 40S ribosomal protein S 65.5 16 0.00055 30.7 6.7 89 59-150 129-220 (265)
13 4efa_G V-type proton ATPase su 63.3 41 0.0014 24.6 8.3 41 159-199 10-50 (119)
14 3v6i_B V-type ATP synthase, su 63.0 37 0.0013 24.0 8.4 33 172-204 19-51 (105)
15 2k6i_A Uncharacterized protein 58.4 7.3 0.00025 24.5 2.5 21 166-186 23-43 (56)
16 3u5c_B RP10A, 40S ribosomal pr 57.3 15 0.00053 30.7 5.1 90 58-152 125-216 (255)
17 4efa_G V-type proton ATPase su 55.1 30 0.001 25.4 5.8 46 171-216 11-56 (119)
18 2acm_B Mucin-1; auto-catalytic 48.7 29 0.001 21.6 4.1 23 134-156 30-52 (55)
19 3j20_A 30S ribosomal protein S 42.5 1.1E+02 0.0037 24.5 7.8 68 59-135 108-177 (198)
20 2b5u_A Colicin E3; high resolu 39.8 1.8E+02 0.0063 26.7 9.5 34 139-172 278-311 (551)
21 4efa_E V-type proton ATPase su 30.4 2.1E+02 0.0073 23.0 8.8 10 154-163 10-19 (233)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.7e-30 Score=213.69 Aligned_cols=173 Identities=25% Similarity=0.297 Sum_probs=138.5
Q ss_pred eeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHH
Q 023287 45 GDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKND 123 (284)
Q Consensus 45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~ 123 (284)
+.+|+|.++++++. .++|+|+++|.++++++|||.| |.++++++.|+...+.+++++.+|+++|++++++++++|++
T Consensus 7 ~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~R~~ 84 (188)
T 3bk6_A 7 VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDK 84 (188)
T ss_dssp CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHH
T ss_pred EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhhHHH
Confidence 58999999999987 8999999999999999999998 67788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHH
Q 023287 124 IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGI 203 (284)
Q Consensus 124 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~ 203 (284)
|+..+++.+++.+.+|||.|.+|.|++|+||+++.++|++++.|++++++.+.+|||+ +++.+..|+|
T Consensus 85 i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege-----------~~a~~~~a~a- 152 (188)
T 3bk6_A 85 LNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAE-----------RQAAEKLREA- 152 (188)
T ss_dssp HHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999988887776655444444 4444333332
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhccCCC
Q 023287 204 ARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKS 255 (284)
Q Consensus 204 a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 255 (284)
.+.++. +| ..+..||||++.+++.++++
T Consensus 153 --------------~~~~~~------~~----~~l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 153 --------------AEIISE------HP----MALQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp --------------HHHHHH------CT----THHHHHHTTC----------
T ss_pred --------------HHHHHh------CH----HHHHHHHHHHHHHHhcCCCC
Confidence 111221 23 34677999999999865443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.95 E-value=1.3e-27 Score=187.24 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=106.0
Q ss_pred eecCCcceeEeeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCC
Q 023287 34 CVPWLLGCQIAGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKL 112 (284)
Q Consensus 34 ~~~P~~~~~v~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~ 112 (284)
+..||++ .+ .++|+|.+++++++ +++|+|++.+.|++.++|||.| |.++++++.|++..+..+++++||+++|++
T Consensus 3 l~~P~id-~v-~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTD-SA-AKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCcee-EE-EEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 6789975 44 48999999999987 8999999999999999999999 789999999999999999999999999999
Q ss_pred cHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023287 113 DLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAA 167 (284)
Q Consensus 113 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A 167 (284)
++++++++|++|+.++++.+++.+++|||+|.+|+|++++||+++.+||.+++.|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887654
No 3
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.87 E-value=3.7e-22 Score=151.86 Aligned_cols=110 Identities=29% Similarity=0.421 Sum_probs=105.2
Q ss_pred eeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHH
Q 023287 45 GDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKND 123 (284)
Q Consensus 45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~ 123 (284)
+.+|+|.++++++. .++|+|++++.+++.++|||.| |.++++++.|++..+.+.+++++|+++|++++++++++|++
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~ 80 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDI 80 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHH
T ss_pred eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHH
Confidence 36899999999988 9999999999999999999998 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHH
Q 023287 124 IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVH 156 (284)
Q Consensus 124 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 156 (284)
|++.+++.+++.+++|||+|.+|.|++++||++
T Consensus 81 i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 81 INARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999999974
No 4
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.86 E-value=6.9e-23 Score=162.28 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=107.5
Q ss_pred eeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEc-ccchh-hHhccc-c----CHHHHHHHHHHHHHHHHcCCCcHHH
Q 023287 45 GDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRAL-AKKAS-DAFYKL-S----NTRTQIQAYVFDVIRASVPKLDLDD 116 (284)
Q Consensus 45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~-d~~~~-~~~~~~-~----~~~~~l~~~~~~~lr~~i~~~~~~e 116 (284)
.++|+|.+++++++ +++|+|++++.||+.++|||. ||... .+..++ + ..+..+.+.+++.||+++|++++++
T Consensus 8 ~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tlde 87 (143)
T 1win_A 8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ 87 (143)
T ss_dssp CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred EEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 48999999999987 899999999999999999998 43221 112121 1 2345788899999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023287 117 VFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAA 168 (284)
Q Consensus 117 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~ 168 (284)
++++|++|++.+++.++..+.+|||+|.+|+|++|+||+++.+||.+++.|+
T Consensus 88 ils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 88 IYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998876664
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.95 E-value=2.9e-07 Score=88.78 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=100.7
Q ss_pred EEEecCCeEEEEeec--CccceeeCCcceeecCCcceeEeeeece-----------eEEEEecCC-------CcccCCCc
Q 023287 7 CVQVDQSTVAIRERF--GKFDEVLDPGCHCVPWLLGCQIAGDLSL-----------RLQQLDVRC-------ETKTKDNV 66 (284)
Q Consensus 7 ~~~V~~ge~~Vv~~f--G~~~~~~~pG~~~~~P~~~~~v~~~v~~-----------r~~~~~~~~-------~v~TkD~~ 66 (284)
.|.||.+...-++-+ |+..-+.||-+.+.-|- +.+ ..+++ +...+.+.+ .+-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~f-tvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQF-TVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEE-CCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccE-EEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 467888888878765 44445778988777664 222 12221 111122332 57899999
Q ss_pred EEEEEEEEEEEEc--cc---chhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHH-HHHHHH---------
Q 023287 67 FVNVVASVQYRAL--AK---KASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIA-KAVEEE--------- 131 (284)
Q Consensus 67 ~v~v~~~v~yrI~--d~---~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~-~~v~~~--------- 131 (284)
.+.+..+++|... |+ .....+|.+.|+-.-+-..+.|.+|..++..++++++.+-..|- ..+.-.
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999874 32 22367899999999888999999999999999999998654442 211110
Q ss_pred ------HH--HHHhhcCeEEEEEEEeeccCCH
Q 023287 132 ------LE--KAMSAYGYEIVQTLIVDIEPDV 155 (284)
Q Consensus 132 ------l~--~~l~~~Gi~v~~v~I~~i~~p~ 155 (284)
.+ -.+...|+.|++|.|+++.|-+
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvD 647 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVD 647 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESS
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccC
Confidence 00 1245669999999999999753
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=83.82 E-value=8.8 Score=37.59 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=15.1
Q ss_pred hhcCeEEEEEEEeeccCCHHHHHHHH
Q 023287 137 SAYGYEIVQTLIVDIEPDVHVKRAMN 162 (284)
Q Consensus 137 ~~~Gi~v~~v~I~~i~~p~~~~~ai~ 162 (284)
-=..|.|.+|+..|.+--+.+++++.
T Consensus 634 vitsVDvqsvEpvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 634 VVSSVDVQSVEPVDQRTRDALQRSVQ 659 (861)
T ss_dssp EEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccCHHHHHHHHHHHH
Confidence 33456777777766665555444444
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=79.09 E-value=2.2 Score=33.92 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc
Q 023287 200 GVGIARQRQAIVDGLRDSVLGFSEN 224 (284)
Q Consensus 200 Aea~a~~~~~~a~a~~~a~~~~~~a 224 (284)
|+.++++..++|+|++++.+.++++
T Consensus 128 Aere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 128 AERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334455666667777777777665
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=70.45 E-value=13 Score=29.46 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhcchHHH
Q 023287 175 NEKAEAEKIVQIKRAEGEAES 195 (284)
Q Consensus 175 ~~~Ae~~~~~~~~~A~aeae~ 195 (284)
+.+|+.++...+..|+.+|++
T Consensus 19 ~~eA~~~a~~I~~eA~~eA~~ 39 (187)
T 3v6i_A 19 LQEAEAKAEAVKREAEEKAKA 39 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 9
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=67.40 E-value=43 Score=26.25 Aligned_cols=10 Identities=0% Similarity=0.282 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 023287 240 TQYFDTMKEI 249 (284)
Q Consensus 240 ~~~l~~l~~~ 249 (284)
..-.+++..+
T Consensus 105 ~Li~ea~~~l 114 (187)
T 3v6i_A 105 KLALEALEAL 114 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 3334444443
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=67.32 E-value=24 Score=24.96 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023287 168 ARLRVAANEKAEAEKIVQI 186 (284)
Q Consensus 168 ~~~~~a~~~~Ae~~~~~~~ 186 (284)
+++.++.+.+||+++...+
T Consensus 26 r~eA~~~v~~AEAeA~ril 44 (105)
T 3v6i_B 26 KKEAEERVKRAEAEAKALL 44 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444433
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=65.77 E-value=10 Score=23.49 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhcchHHHHHHhcH
Q 023287 179 EAEKIVQIKRAEGEAESKYLAGV 201 (284)
Q Consensus 179 e~~~~~~~~~A~aeae~~~~~Ae 201 (284)
+.++...+..|+.+++..+..|+
T Consensus 20 ~~eA~~Il~eA~~eA~~Ii~eA~ 42 (52)
T 2kk7_A 20 KAEANKIISEAEAEKAKILEKAK 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333
No 12
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=65.50 E-value=16 Score=30.70 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred CcccCCCcEEEEEEEEEEEEcc---cchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHH
Q 023287 59 ETKTKDNVFVNVVASVQYRALA---KKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKA 135 (284)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~d---~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~ 135 (284)
++.|+||..+.|-+...-+=.. ....+-.|.-......|+..+...+...++..++++++..- +...+..++.+.
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~keI~k~ 206 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKKIEKE 206 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHHHHHH
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHHHHHH
Confidence 6789999999887775443322 11222222222445589999999999999999999999742 233344444444
Q ss_pred HhhcCeEEEEEEEee
Q 023287 136 MSAYGYEIVQTLIVD 150 (284)
Q Consensus 136 l~~~Gi~v~~v~I~~ 150 (284)
.... +-+.+|.|+.
T Consensus 207 ~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 207 TKNI-FPLQNITIRK 220 (265)
T ss_dssp HTTT-CCEEEEEEEE
T ss_pred hhhc-cccceEEEEE
Confidence 4443 3355566655
No 13
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=63.34 E-value=41 Score=24.61 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023287 159 RAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLA 199 (284)
Q Consensus 159 ~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~ 199 (284)
+-|..-+.||+++...+.+|+..+...+..|+.+|++.+..
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777887777777777777777777777777665543
No 14
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=63.01 E-value=37 Score=23.99 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHH
Q 023287 172 VAANEKAEAEKIVQIKRAEGEAESKYLAGVGIA 204 (284)
Q Consensus 172 ~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a 204 (284)
.+.+..|..++...+..|++++.+....|++.+
T Consensus 19 ~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 19 LERLEAAKKEAEERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776666666543
No 15
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=58.35 E-value=7.3 Score=24.53 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023287 166 AAARLRVAANEKAEAEKIVQI 186 (284)
Q Consensus 166 ~A~~~~~a~~~~Ae~~~~~~~ 186 (284)
.|+++....+.+|+.++...+
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii 43 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIK 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 16
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=57.28 E-value=15 Score=30.71 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHHHHHHHHH
Q 023287 58 CETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAVEEELEKA 135 (284)
Q Consensus 58 ~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~~l~~~ 135 (284)
.++.|+||..+.+-....-.-.+....+-.|--......|+..+...+...++..++++++.. -+.|..++....+
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k-- 202 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATK-- 202 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHH--
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhc--
Confidence 378999999998877755333221111222222244558999999999999999999999974 3555555555443
Q ss_pred HhhcCeEEEEEEEeecc
Q 023287 136 MSAYGYEIVQTLIVDIE 152 (284)
Q Consensus 136 l~~~Gi~v~~v~I~~i~ 152 (284)
.. +-+.+|.|+.+.
T Consensus 203 --~I-yPL~~V~IrKvK 216 (255)
T 3u5c_B 203 --DI-FPLQNIHVRKVK 216 (255)
T ss_dssp --TT-CCCEEEECCCEE
T ss_pred --cc-cccceEEEEEEE
Confidence 32 234556655543
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=55.12 E-value=30 Score=25.40 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHH
Q 023287 171 RVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRD 216 (284)
Q Consensus 171 ~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~ 216 (284)
.......||.++...+..|+.........|..+|.+.+..-..+.+
T Consensus 11 GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE 56 (119)
T 4efa_G 11 GIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKD 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888887777787777776665555554
No 18
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=48.66 E-value=29 Score=21.62 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHhhcCeEEEEEEEeeccCCHH
Q 023287 134 KAMSAYGYEIVQTLIVDIEPDVH 156 (284)
Q Consensus 134 ~~l~~~Gi~v~~v~I~~i~~p~~ 156 (284)
+....|.+.|.+|.++|+.+|..
T Consensus 30 ~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 30 EAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHCCCEEEEEEECC-----
T ss_pred hccccccceecceeEEeccCCCc
Confidence 34558999999999999999864
No 19
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.49 E-value=1.1e+02 Score=24.49 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=48.5
Q ss_pred CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhc--HHHHHHHHHHHHHHH
Q 023287 59 ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ--KNDIAKAVEEELEKA 135 (284)
Q Consensus 59 ~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~~l~~~ 135 (284)
++.|+||..+.+-....-.= ..-......|+......+...++..++++++.. -+.++.++....+..
T Consensus 108 dVkT~DGy~lRvf~i~fT~k---------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I 177 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI 177 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS---------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEEEec---------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc
Confidence 67899998888777653211 011244568999999999999999999999975 366666666655543
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=39.76 E-value=1.8e+02 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.4
Q ss_pred cCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Q 023287 139 YGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRV 172 (284)
Q Consensus 139 ~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~~ 172 (284)
-|++-.-|.+.+|-.|.++.+..++...++|+-.
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~ 311 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWD 311 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhh
Confidence 4888889999999999999998888777777643
No 21
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=30.38 E-value=2.1e+02 Score=22.99 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 023287 154 DVHVKRAMNE 163 (284)
Q Consensus 154 p~~~~~ai~~ 163 (284)
|.++.+.++.
T Consensus 10 ~~~v~~~i~~ 19 (233)
T 4efa_E 10 PNQVNDELNK 19 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555553
Done!