Query 023288
Match_columns 284
No_of_seqs 409 out of 2144
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 1.4E-29 3E-34 209.3 6.9 173 102-282 2-175 (218)
2 COG2226 UbiE Methylase involve 99.9 1E-23 2.2E-28 178.9 13.0 140 125-275 22-162 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.2E-23 2.7E-28 179.8 8.1 148 117-275 10-159 (233)
4 PLN02233 ubiquinone biosynthes 99.9 9E-21 1.9E-25 165.4 13.7 116 155-275 71-188 (261)
5 PLN02396 hexaprenyldihydroxybe 99.8 1.3E-20 2.7E-25 168.1 14.2 107 156-270 130-236 (322)
6 PF08241 Methyltransf_11: Meth 99.8 3.8E-20 8.2E-25 135.8 10.8 95 162-267 1-95 (95)
7 KOG1540 Ubiquinone biosynthesi 99.8 6.5E-20 1.4E-24 153.5 12.7 138 127-272 73-217 (296)
8 PLN02244 tocopherol O-methyltr 99.8 1.7E-19 3.6E-24 163.1 15.4 110 156-272 117-226 (340)
9 PTZ00098 phosphoethanolamine N 99.8 9.5E-19 2.1E-23 152.8 14.5 111 155-273 50-160 (263)
10 PRK11207 tellurite resistance 99.8 9.5E-19 2.1E-23 146.5 12.9 106 156-269 29-134 (197)
11 PF12847 Methyltransf_18: Meth 99.8 6.8E-19 1.5E-23 133.6 10.4 107 157-269 1-111 (112)
12 TIGR02752 MenG_heptapren 2-hep 99.8 1.3E-18 2.8E-23 149.2 12.9 111 155-273 43-155 (231)
13 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.4E-19 5.3E-24 150.0 7.5 105 157-271 59-163 (243)
14 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.2E-18 4.7E-23 149.3 13.2 112 156-274 55-169 (247)
15 KOG1270 Methyltransferases [Co 99.8 7E-19 1.5E-23 148.2 9.4 108 158-271 90-197 (282)
16 PF02353 CMAS: Mycolic acid cy 99.8 2.1E-18 4.6E-23 150.8 12.4 113 154-274 59-171 (273)
17 COG2230 Cfa Cyclopropane fatty 99.8 3.7E-18 8.1E-23 147.6 13.6 112 155-274 70-181 (283)
18 PF13847 Methyltransf_31: Meth 99.8 2.9E-18 6.3E-23 137.7 10.9 107 156-271 2-112 (152)
19 TIGR00477 tehB tellurite resis 99.8 7.2E-18 1.6E-22 141.0 12.6 105 157-270 30-134 (195)
20 TIGR00740 methyltransferase, p 99.8 8.3E-18 1.8E-22 145.0 12.9 112 156-274 52-166 (239)
21 PF13649 Methyltransf_25: Meth 99.8 1.2E-18 2.7E-23 130.1 6.4 96 161-263 1-101 (101)
22 PRK05785 hypothetical protein; 99.8 3.5E-18 7.7E-23 145.9 9.7 99 157-273 51-149 (226)
23 PRK10258 biotin biosynthesis p 99.8 2.2E-17 4.8E-22 143.3 14.6 102 156-271 41-142 (251)
24 PRK14103 trans-aconitate 2-met 99.7 1.1E-17 2.5E-22 145.5 11.4 99 155-269 27-126 (255)
25 PRK11036 putative S-adenosyl-L 99.7 1.2E-17 2.7E-22 145.3 11.3 106 156-269 43-149 (255)
26 TIGR03587 Pse_Me-ase pseudamin 99.7 1E-16 2.2E-21 134.7 14.8 105 156-274 42-147 (204)
27 PRK15068 tRNA mo(5)U34 methylt 99.7 6.9E-17 1.5E-21 144.8 13.6 107 156-270 121-227 (322)
28 PRK12335 tellurite resistance 99.7 5.5E-17 1.2E-21 143.6 11.9 104 157-269 120-223 (287)
29 PLN02336 phosphoethanolamine N 99.7 1.6E-16 3.4E-21 150.2 15.4 110 155-273 264-373 (475)
30 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.8E-16 3.9E-21 133.9 14.0 126 138-268 19-151 (213)
31 PRK01683 trans-aconitate 2-met 99.7 1.5E-16 3.2E-21 138.7 13.6 100 155-268 29-129 (258)
32 PRK11873 arsM arsenite S-adeno 99.7 1.2E-16 2.6E-21 140.4 12.8 110 155-272 75-186 (272)
33 PF03848 TehB: Tellurite resis 99.7 5.9E-17 1.3E-21 133.5 10.2 106 156-270 29-134 (192)
34 TIGR00452 methyltransferase, p 99.7 1.7E-16 3.7E-21 141.0 12.9 109 155-271 119-227 (314)
35 PRK06922 hypothetical protein; 99.7 1.9E-16 4.2E-21 150.3 13.4 110 157-273 418-541 (677)
36 smart00828 PKS_MT Methyltransf 99.7 1.9E-16 4.1E-21 135.1 12.0 104 160-271 2-106 (224)
37 TIGR02072 BioC biotin biosynth 99.7 4E-16 8.7E-21 133.8 13.8 102 157-270 34-136 (240)
38 PLN02490 MPBQ/MSBQ methyltrans 99.7 5.3E-16 1.2E-20 139.0 14.9 105 156-271 112-217 (340)
39 PF08242 Methyltransf_12: Meth 99.7 4.3E-18 9.3E-23 126.6 1.0 95 162-265 1-99 (99)
40 smart00138 MeTrc Methyltransfe 99.7 1.9E-16 4.2E-21 138.2 11.2 113 156-268 98-241 (264)
41 PLN02336 phosphoethanolamine N 99.7 4.7E-16 1E-20 147.0 14.3 110 156-274 36-147 (475)
42 PF05401 NodS: Nodulation prot 99.7 2.9E-16 6.3E-21 128.2 10.7 104 156-269 42-146 (201)
43 PF13489 Methyltransf_23: Meth 99.7 1.8E-16 3.8E-21 127.7 9.4 98 156-272 21-118 (161)
44 PRK00216 ubiE ubiquinone/menaq 99.7 5.5E-16 1.2E-20 133.1 12.7 111 156-273 50-162 (239)
45 KOG4300 Predicted methyltransf 99.7 1.7E-16 3.7E-21 129.1 8.5 112 156-275 75-188 (252)
46 PRK08317 hypothetical protein; 99.7 1.8E-15 3.8E-20 129.7 14.7 107 155-270 17-125 (241)
47 PRK11705 cyclopropane fatty ac 99.7 1.1E-15 2.4E-20 140.0 14.2 105 155-271 165-269 (383)
48 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.5E-15 3.2E-20 129.0 13.9 107 156-272 38-146 (223)
49 PRK06202 hypothetical protein; 99.7 1E-15 2.3E-20 131.3 12.7 105 156-271 59-168 (232)
50 COG4106 Tam Trans-aconitate me 99.7 2.8E-16 6E-21 128.8 8.5 100 155-268 28-128 (257)
51 PRK00107 gidB 16S rRNA methylt 99.7 1.8E-15 3.8E-20 125.2 13.4 102 157-271 45-147 (187)
52 PRK09489 rsmC 16S ribosomal RN 99.7 1.7E-15 3.7E-20 136.6 13.5 213 36-271 77-305 (342)
53 PRK13255 thiopurine S-methyltr 99.6 4.4E-15 9.6E-20 125.9 14.3 125 138-267 22-153 (218)
54 TIGR02716 C20_methyl_CrtF C-20 99.6 4.7E-15 1E-19 132.5 14.5 111 155-273 147-258 (306)
55 TIGR00138 gidB 16S rRNA methyl 99.6 1.6E-15 3.5E-20 125.1 10.2 100 157-269 42-142 (181)
56 KOG3178 Hydroxyindole-O-methyl 99.6 8.2E-15 1.8E-19 129.0 13.9 163 101-277 115-283 (342)
57 TIGR02469 CbiT precorrin-6Y C5 99.6 8.7E-15 1.9E-19 112.7 12.1 103 155-268 17-121 (124)
58 PRK00121 trmB tRNA (guanine-N( 99.6 2.5E-15 5.5E-20 126.2 9.2 107 157-269 40-156 (202)
59 TIGR02021 BchM-ChlM magnesium 99.6 7.9E-15 1.7E-19 124.8 11.8 104 156-268 54-157 (219)
60 PLN02585 magnesium protoporphy 99.6 1.4E-14 2.9E-19 129.1 12.7 104 157-266 144-247 (315)
61 PRK07580 Mg-protoporphyrin IX 99.6 2.4E-14 5.1E-19 122.5 12.9 103 156-267 62-164 (230)
62 TIGR00537 hemK_rel_arch HemK-r 99.6 2.7E-14 5.7E-19 117.8 12.7 107 157-273 19-144 (179)
63 PF05175 MTS: Methyltransferas 99.6 1.8E-14 3.8E-19 117.9 11.4 119 138-270 19-141 (170)
64 PRK13944 protein-L-isoaspartat 99.6 3E-14 6.5E-19 120.0 12.8 102 155-269 70-173 (205)
65 PRK11088 rrmA 23S rRNA methylt 99.6 2E-14 4.4E-19 126.2 11.5 94 157-270 85-182 (272)
66 KOG1271 Methyltransferases [Ge 99.6 1.9E-14 4.1E-19 115.0 9.4 105 160-269 70-181 (227)
67 PRK15001 SAM-dependent 23S rib 99.6 6.4E-14 1.4E-18 127.4 14.1 109 158-270 229-341 (378)
68 PLN03075 nicotianamine synthas 99.6 3.8E-14 8.3E-19 124.1 11.7 106 157-268 123-232 (296)
69 TIGR03438 probable methyltrans 99.6 5.6E-14 1.2E-18 125.1 13.0 113 157-274 63-182 (301)
70 KOG2361 Predicted methyltransf 99.5 3.3E-14 7.1E-19 118.6 10.5 145 107-270 33-184 (264)
71 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.1E-14 4.6E-19 119.9 9.1 106 157-268 16-131 (194)
72 KOG3010 Methyltransferase [Gen 99.5 2.1E-14 4.6E-19 119.8 8.8 120 135-270 17-137 (261)
73 PRK05134 bifunctional 3-demeth 99.5 1E-13 2.2E-18 119.0 13.4 106 155-270 46-152 (233)
74 COG2813 RsmC 16S RNA G1207 met 99.5 8.6E-14 1.9E-18 120.9 12.8 217 35-270 37-267 (300)
75 PRK08287 cobalt-precorrin-6Y C 99.5 8.2E-14 1.8E-18 115.6 12.2 102 155-269 29-131 (187)
76 PRK13942 protein-L-isoaspartat 99.5 1.2E-13 2.7E-18 116.9 12.4 101 155-269 74-176 (212)
77 TIGR00080 pimt protein-L-isoas 99.5 2E-13 4.3E-18 115.8 12.9 100 155-268 75-176 (215)
78 TIGR00406 prmA ribosomal prote 99.5 9.4E-14 2E-18 122.9 10.8 102 157-270 159-260 (288)
79 PRK13256 thiopurine S-methyltr 99.5 3.5E-13 7.6E-18 114.1 13.8 127 138-269 28-163 (226)
80 PF13659 Methyltransf_26: Meth 99.5 3.9E-14 8.4E-19 108.3 6.8 107 158-269 1-115 (117)
81 PF08003 Methyltransf_9: Prote 99.5 1.2E-13 2.6E-18 119.9 10.3 108 156-271 114-221 (315)
82 COG4976 Predicted methyltransf 99.5 5.7E-15 1.2E-19 122.1 2.0 109 156-278 124-236 (287)
83 TIGR01983 UbiG ubiquinone bios 99.5 1.7E-13 3.8E-18 116.7 11.0 105 157-270 45-150 (224)
84 PRK14967 putative methyltransf 99.5 3.3E-13 7.1E-18 115.2 11.9 108 155-270 34-160 (223)
85 PRK00517 prmA ribosomal protei 99.5 2.3E-13 4.9E-18 118.1 9.3 98 156-271 118-215 (250)
86 PRK00377 cbiT cobalt-precorrin 99.5 7.9E-13 1.7E-17 110.8 12.1 103 155-267 38-143 (198)
87 PRK04266 fibrillarin; Provisio 99.5 8.6E-13 1.9E-17 112.4 11.9 100 155-268 70-175 (226)
88 COG4123 Predicted O-methyltran 99.4 4.8E-13 1E-17 114.0 10.1 109 155-268 42-169 (248)
89 TIGR03533 L3_gln_methyl protei 99.4 1.7E-12 3.6E-17 114.7 13.7 106 157-268 121-250 (284)
90 PRK11188 rrmJ 23S rRNA methylt 99.4 8.5E-13 1.8E-17 111.4 11.1 98 156-270 50-166 (209)
91 PRK00312 pcm protein-L-isoaspa 99.4 1.4E-12 3E-17 110.4 12.3 101 155-270 76-176 (212)
92 PRK14121 tRNA (guanine-N(7)-)- 99.4 9.1E-13 2E-17 119.5 11.5 107 156-268 121-234 (390)
93 KOG1541 Predicted protein carb 99.4 5.8E-13 1.3E-17 109.7 9.2 100 157-268 50-159 (270)
94 PLN02232 ubiquinone biosynthes 99.4 5.2E-13 1.1E-17 108.1 8.8 87 184-275 1-87 (160)
95 PLN02781 Probable caffeoyl-CoA 99.4 1.1E-12 2.3E-17 112.7 11.1 116 155-281 66-189 (234)
96 cd02440 AdoMet_MTases S-adenos 99.4 2E-12 4.3E-17 95.0 11.0 102 160-268 1-103 (107)
97 PRK11805 N5-glutamine S-adenos 99.4 2.9E-12 6.3E-17 114.2 13.2 103 159-267 135-261 (307)
98 TIGR02081 metW methionine bios 99.4 1.1E-12 2.3E-17 109.6 9.8 90 157-261 13-104 (194)
99 TIGR03534 RF_mod_PrmC protein- 99.4 3.9E-12 8.4E-17 110.2 13.4 105 157-268 87-216 (251)
100 TIGR00536 hemK_fam HemK family 99.4 4.1E-12 8.8E-17 112.3 13.7 104 159-268 116-243 (284)
101 PRK07402 precorrin-6B methylas 99.4 4.6E-12 1E-16 105.9 12.6 104 155-270 38-143 (196)
102 PF00891 Methyltransf_2: O-met 99.4 2.4E-12 5.3E-17 111.0 10.9 105 155-275 98-205 (241)
103 TIGR01177 conserved hypothetic 99.4 3.9E-12 8.4E-17 114.8 12.3 108 155-269 180-294 (329)
104 PF05724 TPMT: Thiopurine S-me 99.4 1.7E-12 3.7E-17 110.0 9.0 126 137-267 21-153 (218)
105 PTZ00146 fibrillarin; Provisio 99.4 6.5E-12 1.4E-16 109.7 12.8 104 154-269 129-237 (293)
106 COG2242 CobL Precorrin-6B meth 99.4 1E-11 2.2E-16 100.8 12.3 114 140-268 20-134 (187)
107 PF07021 MetW: Methionine bios 99.4 3.6E-12 7.7E-17 104.1 9.7 95 156-268 12-108 (193)
108 PRK14968 putative methyltransf 99.4 8E-12 1.7E-16 103.3 12.0 109 156-270 22-149 (188)
109 COG2264 PrmA Ribosomal protein 99.4 4.8E-12 1E-16 110.6 11.0 104 156-270 161-264 (300)
110 PF03291 Pox_MCEL: mRNA cappin 99.4 5.2E-12 1.1E-16 113.3 11.1 133 136-268 39-185 (331)
111 PF06325 PrmA: Ribosomal prote 99.3 3.7E-12 8E-17 112.2 9.4 100 156-269 160-259 (295)
112 PRK00811 spermidine synthase; 99.3 4.5E-12 9.7E-17 111.9 9.9 112 156-268 75-190 (283)
113 PRK09328 N5-glutamine S-adenos 99.3 2.3E-11 5E-16 106.8 14.1 107 155-268 106-237 (275)
114 PRK14966 unknown domain/N5-glu 99.3 1.4E-11 3E-16 112.5 12.9 104 157-267 251-379 (423)
115 COG2518 Pcm Protein-L-isoaspar 99.3 1.5E-11 3.2E-16 101.9 11.8 101 155-270 70-170 (209)
116 PRK13943 protein-L-isoaspartat 99.3 1.2E-11 2.5E-16 110.6 11.5 101 155-269 78-180 (322)
117 PHA03411 putative methyltransf 99.3 1.2E-11 2.7E-16 106.9 11.1 100 157-268 64-182 (279)
118 PRK04457 spermidine synthase; 99.3 1.3E-11 2.8E-16 107.8 11.4 108 156-268 65-176 (262)
119 PF01739 CheR: CheR methyltran 99.3 1E-11 2.2E-16 103.4 9.6 118 155-272 29-180 (196)
120 smart00650 rADc Ribosomal RNA 99.3 1.9E-11 4.2E-16 99.7 10.7 102 155-268 11-112 (169)
121 PF05148 Methyltransf_8: Hypot 99.3 3.9E-12 8.4E-17 104.8 6.0 132 109-272 30-161 (219)
122 TIGR00438 rrmJ cell division p 99.3 1.1E-11 2.4E-16 103.0 8.8 97 155-268 30-145 (188)
123 COG4122 Predicted O-methyltran 99.3 2.5E-11 5.4E-16 102.0 10.6 127 136-280 45-176 (219)
124 PLN02476 O-methyltransferase 99.3 3.3E-11 7.1E-16 105.1 11.4 116 155-281 116-239 (278)
125 PF06080 DUF938: Protein of un 99.3 4.8E-11 1E-15 98.8 11.4 130 139-277 11-149 (204)
126 PRK01544 bifunctional N5-gluta 99.3 2.7E-11 5.8E-16 115.0 11.0 105 157-267 138-267 (506)
127 PF01596 Methyltransf_3: O-met 99.3 1.6E-11 3.4E-16 103.0 8.3 113 157-280 45-165 (205)
128 TIGR03704 PrmC_rel_meth putati 99.3 5.2E-11 1.1E-15 103.3 11.5 102 158-268 87-215 (251)
129 PRK14901 16S rRNA methyltransf 99.3 5.3E-11 1.2E-15 111.2 12.3 109 155-269 250-384 (434)
130 KOG1975 mRNA cap methyltransfe 99.2 2.2E-11 4.7E-16 105.7 8.3 130 135-268 99-236 (389)
131 PF01135 PCMT: Protein-L-isoas 99.2 1.8E-11 3.9E-16 102.9 7.6 102 155-270 70-173 (209)
132 TIGR00563 rsmB ribosomal RNA s 99.2 8.2E-11 1.8E-15 109.7 12.7 111 155-270 236-369 (426)
133 PRK10901 16S rRNA methyltransf 99.2 1.2E-10 2.5E-15 108.7 13.4 109 155-270 242-373 (427)
134 KOG3045 Predicted RNA methylas 99.2 2.7E-11 5.9E-16 102.1 7.6 130 109-272 138-267 (325)
135 PRK14904 16S rRNA methyltransf 99.2 1.3E-10 2.9E-15 108.9 13.0 108 155-269 248-377 (445)
136 PHA03412 putative methyltransf 99.2 9.4E-11 2E-15 99.2 10.6 97 158-267 50-160 (241)
137 TIGR00446 nop2p NOL1/NOP2/sun 99.2 9E-11 1.9E-15 102.7 10.5 109 155-269 69-199 (264)
138 TIGR00417 speE spermidine synt 99.2 7.9E-11 1.7E-15 103.4 9.2 110 157-268 72-185 (270)
139 PLN02589 caffeoyl-CoA O-methyl 99.2 1.4E-10 3.1E-15 99.8 10.5 114 156-280 78-200 (247)
140 PRK14903 16S rRNA methyltransf 99.2 1.9E-10 4.1E-15 107.2 12.1 109 155-269 235-366 (431)
141 PRK01581 speE spermidine synth 99.2 2.3E-10 5E-15 102.7 12.0 115 156-270 149-269 (374)
142 KOG2940 Predicted methyltransf 99.2 2.6E-11 5.7E-16 100.5 5.4 102 157-268 72-173 (325)
143 PLN02366 spermidine synthase 99.2 2.5E-10 5.5E-15 101.5 12.0 111 156-268 90-205 (308)
144 COG2890 HemK Methylase of poly 99.2 1.9E-10 4E-15 101.2 10.6 101 160-268 113-237 (280)
145 PRK15128 23S rRNA m(5)C1962 me 99.2 9.1E-11 2E-15 107.9 9.0 109 157-269 220-339 (396)
146 PF05219 DREV: DREV methyltran 99.2 2.1E-10 4.5E-15 97.7 10.2 95 157-269 94-188 (265)
147 PRK14902 16S rRNA methyltransf 99.2 3E-10 6.4E-15 106.6 12.4 108 155-269 248-379 (444)
148 PRK11783 rlmL 23S rRNA m(2)G24 99.2 6.2E-11 1.3E-15 116.8 8.0 110 157-270 538-657 (702)
149 PRK10611 chemotaxis methyltran 99.2 1.9E-10 4E-15 101.1 9.6 112 157-268 115-261 (287)
150 PRK10909 rsmD 16S rRNA m(2)G96 99.1 6.2E-10 1.3E-14 93.0 10.9 104 157-269 53-159 (199)
151 KOG2899 Predicted methyltransf 99.1 6.5E-10 1.4E-14 93.1 10.2 110 156-267 57-207 (288)
152 PRK13168 rumA 23S rRNA m(5)U19 99.1 6.8E-10 1.5E-14 104.1 11.2 103 155-270 295-401 (443)
153 PRK03612 spermidine synthase; 99.1 4.2E-10 9E-15 107.4 9.7 113 156-268 296-414 (521)
154 COG3963 Phospholipid N-methylt 99.1 3.3E-09 7.1E-14 84.1 12.6 117 139-269 33-156 (194)
155 KOG1499 Protein arginine N-met 99.1 4.5E-10 9.7E-15 99.2 8.2 106 156-267 59-165 (346)
156 PLN02672 methionine S-methyltr 99.1 1.2E-09 2.7E-14 110.3 12.0 110 158-267 119-276 (1082)
157 COG2519 GCD14 tRNA(1-methylade 99.0 1.5E-09 3.3E-14 92.0 10.3 102 155-269 92-195 (256)
158 PF02390 Methyltransf_4: Putat 99.0 6.8E-10 1.5E-14 92.6 8.1 104 159-268 19-132 (195)
159 COG2263 Predicted RNA methylas 99.0 7.1E-10 1.5E-14 89.9 7.6 76 155-240 43-118 (198)
160 PF10294 Methyltransf_16: Puta 99.0 8E-10 1.7E-14 90.5 7.8 111 155-271 43-158 (173)
161 COG1352 CheR Methylase of chem 99.0 2.8E-09 6.1E-14 92.6 11.5 116 157-272 96-246 (268)
162 PRK03522 rumB 23S rRNA methylu 99.0 1.3E-09 2.8E-14 97.8 9.8 102 157-270 173-275 (315)
163 PRK14896 ksgA 16S ribosomal RN 98.9 2.3E-08 5E-13 87.2 12.9 77 155-242 27-103 (258)
164 TIGR02085 meth_trns_rumB 23S r 98.9 7.9E-09 1.7E-13 94.8 10.3 102 157-270 233-335 (374)
165 TIGR00479 rumA 23S rRNA (uraci 98.9 7.9E-09 1.7E-13 96.7 10.4 103 155-269 290-396 (431)
166 KOG2904 Predicted methyltransf 98.9 1.2E-08 2.5E-13 87.1 10.1 110 156-270 147-286 (328)
167 PF03141 Methyltransf_29: Puta 98.9 1.2E-09 2.6E-14 100.6 4.5 102 157-270 117-220 (506)
168 COG0220 Predicted S-adenosylme 98.9 6.1E-09 1.3E-13 88.5 8.3 104 159-268 50-163 (227)
169 PRK00274 ksgA 16S ribosomal RN 98.9 1.9E-08 4.2E-13 88.3 11.8 76 155-240 40-115 (272)
170 TIGR00095 RNA methyltransferas 98.9 1E-08 2.2E-13 85.1 9.3 105 157-270 49-159 (189)
171 PF12147 Methyltransf_20: Puta 98.9 4.1E-08 8.8E-13 84.9 12.7 110 155-269 133-249 (311)
172 PF05185 PRMT5: PRMT5 arginine 98.9 6.3E-09 1.4E-13 97.1 8.1 103 158-266 187-294 (448)
173 TIGR00755 ksgA dimethyladenosi 98.9 2.2E-08 4.7E-13 87.1 11.0 76 155-241 27-105 (253)
174 PRK11727 23S rRNA mA1618 methy 98.8 1.6E-08 3.4E-13 90.3 9.6 83 157-244 114-203 (321)
175 PF08704 GCD14: tRNA methyltra 98.8 1.2E-08 2.6E-13 87.7 7.9 103 155-269 38-146 (247)
176 PRK04148 hypothetical protein; 98.8 6.9E-08 1.5E-12 74.9 10.8 93 156-269 15-109 (134)
177 TIGR00478 tly hemolysin TlyA f 98.8 2E-08 4.4E-13 85.5 8.6 95 156-267 74-169 (228)
178 KOG1500 Protein arginine N-met 98.8 3E-08 6.4E-13 86.9 9.3 107 155-268 175-281 (517)
179 PF09243 Rsm22: Mitochondrial 98.8 4.5E-08 9.8E-13 86.0 10.1 112 156-276 32-146 (274)
180 PLN02823 spermine synthase 98.8 6.3E-08 1.4E-12 87.2 11.2 110 156-268 102-219 (336)
181 PTZ00338 dimethyladenosine tra 98.8 9.3E-08 2E-12 84.7 11.8 80 155-242 34-113 (294)
182 PF01170 UPF0020: Putative RNA 98.7 8.2E-08 1.8E-12 79.1 9.5 111 155-270 26-152 (179)
183 COG1092 Predicted SAM-dependen 98.7 4.4E-08 9.5E-13 89.4 8.5 111 157-271 217-338 (393)
184 KOG1269 SAM-dependent methyltr 98.7 1.5E-08 3.3E-13 91.7 4.7 112 156-274 109-220 (364)
185 KOG3420 Predicted RNA methylas 98.7 1.8E-08 3.8E-13 78.1 4.1 79 156-241 47-125 (185)
186 COG0421 SpeE Spermidine syntha 98.7 1.9E-07 4.1E-12 81.9 10.5 108 158-268 77-189 (282)
187 COG1041 Predicted DNA modifica 98.7 1.9E-07 4.2E-12 83.0 10.4 109 155-270 195-311 (347)
188 KOG1663 O-methyltransferase [S 98.7 4.8E-07 1E-11 75.7 12.1 125 139-281 62-194 (237)
189 PRK00536 speE spermidine synth 98.7 1.1E-07 2.4E-12 82.4 8.6 101 155-268 70-170 (262)
190 PRK01544 bifunctional N5-gluta 98.6 1.2E-07 2.5E-12 90.3 8.8 107 156-268 346-461 (506)
191 PF03602 Cons_hypoth95: Conser 98.6 3.3E-08 7.2E-13 81.6 4.3 108 157-272 42-155 (183)
192 TIGR03439 methyl_EasF probable 98.6 5.9E-07 1.3E-11 80.3 11.8 112 156-271 75-200 (319)
193 PRK04338 N(2),N(2)-dimethylgua 98.6 1.6E-07 3.5E-12 86.2 8.2 99 158-268 58-157 (382)
194 PRK05031 tRNA (uracil-5-)-meth 98.6 2.2E-07 4.8E-12 84.9 8.9 98 159-270 208-321 (362)
195 TIGR02143 trmA_only tRNA (urac 98.6 1.7E-07 3.6E-12 85.4 8.0 98 159-270 199-312 (353)
196 PF10672 Methyltrans_SAM: S-ad 98.6 8.3E-08 1.8E-12 84.3 5.6 110 157-270 123-239 (286)
197 PF07942 N2227: N2227-like pro 98.6 4.6E-07 9.9E-12 78.7 9.8 110 156-268 55-201 (270)
198 COG0500 SmtA SAM-dependent met 98.5 1.8E-06 3.9E-11 67.3 12.3 102 161-273 52-159 (257)
199 KOG3191 Predicted N6-DNA-methy 98.5 6.8E-07 1.5E-11 72.0 8.9 104 158-269 44-168 (209)
200 PRK11933 yebU rRNA (cytosine-C 98.5 8.9E-07 1.9E-11 83.2 11.1 108 155-268 111-241 (470)
201 COG2521 Predicted archaeal met 98.5 1.6E-07 3.5E-12 78.5 4.9 111 155-269 132-245 (287)
202 PF02475 Met_10: Met-10+ like- 98.5 2.7E-07 5.9E-12 77.0 6.1 100 155-266 99-199 (200)
203 KOG1661 Protein-L-isoaspartate 98.5 9.8E-07 2.1E-11 72.7 9.2 105 156-268 81-192 (237)
204 PF02527 GidB: rRNA small subu 98.5 9.3E-07 2E-11 72.9 9.0 96 160-268 51-147 (184)
205 KOG1331 Predicted methyltransf 98.5 2E-07 4.4E-12 80.3 5.2 96 157-268 45-142 (293)
206 PF01564 Spermine_synth: Sperm 98.4 1.8E-07 3.8E-12 81.0 3.8 112 156-269 75-191 (246)
207 COG0030 KsgA Dimethyladenosine 98.4 4.5E-06 9.8E-11 72.0 10.9 77 155-240 28-105 (259)
208 COG2520 Predicted methyltransf 98.3 2.7E-06 5.8E-11 76.2 9.4 109 156-275 187-295 (341)
209 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 5.2E-07 1.1E-11 77.9 4.6 118 155-272 54-202 (256)
210 COG0742 N6-adenine-specific me 98.3 3.4E-06 7.4E-11 69.1 8.9 107 156-268 42-153 (187)
211 TIGR00308 TRM1 tRNA(guanine-26 98.3 2.5E-06 5.4E-11 78.0 7.7 99 158-268 45-146 (374)
212 COG0357 GidB Predicted S-adeno 98.3 7.5E-06 1.6E-10 68.8 9.7 98 158-267 68-166 (215)
213 PRK00050 16S rRNA m(4)C1402 me 98.2 2.1E-06 4.5E-11 75.9 6.4 75 155-237 17-97 (296)
214 KOG0820 Ribosomal RNA adenine 98.2 6.6E-06 1.4E-10 70.5 9.1 77 154-238 55-131 (315)
215 KOG3987 Uncharacterized conser 98.2 3E-07 6.4E-12 75.6 0.8 96 155-268 110-206 (288)
216 COG4076 Predicted RNA methylas 98.2 3.1E-06 6.7E-11 68.6 6.2 102 159-269 34-135 (252)
217 KOG2352 Predicted spermine/spe 98.2 1E-05 2.2E-10 74.8 9.9 105 159-270 50-162 (482)
218 PF04672 Methyltransf_19: S-ad 98.2 1.4E-05 3E-10 69.1 10.1 127 135-272 49-193 (267)
219 PF02384 N6_Mtase: N-6 DNA Met 98.2 6.4E-06 1.4E-10 73.7 8.3 110 155-268 44-182 (311)
220 PF11968 DUF3321: Putative met 98.2 1E-05 2.2E-10 67.5 8.3 108 138-268 31-148 (219)
221 PF09445 Methyltransf_15: RNA 98.1 1.7E-06 3.6E-11 69.7 3.1 72 160-237 2-76 (163)
222 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.4E-05 3.1E-10 79.1 10.1 108 156-268 189-346 (702)
223 PF01728 FtsJ: FtsJ-like methy 98.1 7.7E-07 1.7E-11 73.3 1.0 96 157-269 23-139 (181)
224 COG2265 TrmA SAM-dependent met 98.1 2.2E-05 4.8E-10 73.1 10.2 104 155-270 291-397 (432)
225 KOG1709 Guanidinoacetate methy 98.1 2.7E-05 5.8E-10 64.6 9.3 105 156-269 100-206 (271)
226 PF00398 RrnaAD: Ribosomal RNA 98.1 3.8E-05 8.3E-10 67.1 10.5 89 155-257 28-119 (262)
227 PF08123 DOT1: Histone methyla 98.1 3.3E-05 7.1E-10 64.9 9.5 114 155-275 40-164 (205)
228 TIGR02987 met_A_Alw26 type II 98.0 1.8E-05 4E-10 75.9 8.9 79 157-241 31-123 (524)
229 COG3897 Predicted methyltransf 98.0 2E-05 4.2E-10 64.5 7.4 104 155-270 77-180 (218)
230 KOG2730 Methylase [General fun 98.0 5.2E-06 1.1E-10 69.0 4.1 77 157-239 94-174 (263)
231 PF13679 Methyltransf_32: Meth 97.9 7.1E-05 1.5E-09 59.1 9.0 102 155-267 23-129 (141)
232 COG0116 Predicted N6-adenine-s 97.9 0.0002 4.4E-09 64.8 12.0 109 155-268 189-343 (381)
233 COG0144 Sun tRNA and rRNA cyto 97.9 0.00026 5.6E-09 64.6 12.8 108 155-268 154-287 (355)
234 PF04816 DUF633: Family of unk 97.9 4.9E-05 1.1E-09 63.8 7.3 97 161-267 1-99 (205)
235 PF05958 tRNA_U5-meth_tr: tRNA 97.9 9.2E-05 2E-09 67.5 9.5 78 160-244 199-292 (352)
236 COG4627 Uncharacterized protei 97.8 6.2E-06 1.4E-10 64.8 1.1 55 214-268 31-85 (185)
237 COG0293 FtsJ 23S rRNA methylas 97.8 0.00015 3.2E-09 60.4 8.8 99 155-270 43-160 (205)
238 PRK11760 putative 23S rRNA C24 97.8 0.00013 2.9E-09 65.1 8.5 88 155-262 209-296 (357)
239 TIGR01444 fkbM_fam methyltrans 97.7 7.7E-05 1.7E-09 58.7 6.2 58 160-223 1-59 (143)
240 COG4798 Predicted methyltransf 97.7 7.2E-05 1.6E-09 61.2 5.5 111 155-277 46-174 (238)
241 COG4262 Predicted spermidine s 97.7 0.00025 5.4E-09 63.4 9.3 111 156-269 288-407 (508)
242 PF01269 Fibrillarin: Fibrilla 97.7 0.00042 9.1E-09 58.2 10.0 107 150-268 66-177 (229)
243 PF03059 NAS: Nicotianamine sy 97.7 0.00012 2.6E-09 63.9 7.0 106 157-268 120-229 (276)
244 COG1189 Predicted rRNA methyla 97.7 0.00019 4.1E-09 60.7 7.8 98 155-267 77-176 (245)
245 KOG2915 tRNA(1-methyladenosine 97.7 0.0005 1.1E-08 59.2 10.2 100 155-266 103-207 (314)
246 KOG3201 Uncharacterized conser 97.6 6.5E-05 1.4E-09 59.6 3.7 132 130-269 5-140 (201)
247 COG5459 Predicted rRNA methyla 97.6 8E-05 1.7E-09 66.1 4.6 118 156-276 112-232 (484)
248 PF13578 Methyltransf_24: Meth 97.5 2.6E-05 5.6E-10 58.3 0.4 99 162-269 1-105 (106)
249 PF03141 Methyltransf_29: Puta 97.5 0.0001 2.3E-09 68.5 4.2 100 156-270 364-468 (506)
250 KOG2187 tRNA uracil-5-methyltr 97.5 0.00097 2.1E-08 62.2 10.2 105 155-270 381-491 (534)
251 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00051 1.1E-08 60.7 7.1 108 155-268 83-218 (283)
252 KOG2798 Putative trehalase [Ca 97.3 0.0017 3.8E-08 57.0 9.1 110 156-268 149-295 (369)
253 PF05971 Methyltransf_10: Prot 97.2 0.0014 3.1E-08 57.8 8.1 82 158-244 103-191 (299)
254 KOG2793 Putative N2,N2-dimethy 97.2 0.0019 4.1E-08 55.6 8.3 110 157-269 86-199 (248)
255 COG1889 NOP1 Fibrillarin-like 97.2 0.0068 1.5E-07 50.2 10.7 111 146-268 65-179 (231)
256 PF06962 rRNA_methylase: Putat 97.2 0.00077 1.7E-08 52.8 5.1 80 182-268 1-91 (140)
257 COG2384 Predicted SAM-dependen 97.1 0.0069 1.5E-07 50.8 10.5 78 157-239 16-94 (226)
258 TIGR00006 S-adenosyl-methyltra 97.0 0.0037 8E-08 55.6 8.1 76 155-237 18-99 (305)
259 PF07091 FmrO: Ribosomal RNA m 97.0 0.0021 4.6E-08 55.0 6.3 84 156-247 104-188 (251)
260 KOG4589 Cell division protein 96.9 0.0062 1.4E-07 49.7 8.6 99 155-270 67-185 (232)
261 cd00315 Cyt_C5_DNA_methylase C 96.9 0.0084 1.8E-07 52.8 10.3 100 160-273 2-114 (275)
262 PHA01634 hypothetical protein 96.9 0.0032 7E-08 48.1 6.3 47 157-203 28-74 (156)
263 KOG1501 Arginine N-methyltrans 96.8 0.0021 4.6E-08 58.8 5.6 98 158-260 67-165 (636)
264 KOG3115 Methyltransferase-like 96.8 0.0029 6.2E-08 52.3 5.6 112 157-268 60-182 (249)
265 PRK10742 putative methyltransf 96.7 0.0035 7.6E-08 53.8 5.7 112 156-270 85-220 (250)
266 PLN02668 indole-3-acetate carb 96.6 0.0073 1.6E-07 55.4 7.7 47 225-271 157-239 (386)
267 PF02636 Methyltransf_28: Puta 96.6 0.0098 2.1E-07 51.6 7.7 46 157-202 18-72 (252)
268 COG4301 Uncharacterized conser 96.4 0.04 8.6E-07 47.1 10.2 113 156-275 77-200 (321)
269 KOG1122 tRNA and rRNA cytosine 96.4 0.013 2.7E-07 53.7 7.3 109 154-269 238-371 (460)
270 PF03492 Methyltransf_7: SAM d 96.3 0.013 2.8E-07 53.1 7.4 111 155-271 14-185 (334)
271 PF06859 Bin3: Bicoid-interact 96.3 0.0018 3.9E-08 48.3 1.2 38 230-267 1-42 (110)
272 COG1064 AdhP Zn-dependent alco 96.3 0.032 6.9E-07 50.3 9.2 97 154-271 163-261 (339)
273 KOG4058 Uncharacterized conser 96.3 0.029 6.3E-07 44.1 7.8 95 136-239 55-149 (199)
274 KOG2539 Mitochondrial/chloropl 96.2 0.026 5.7E-07 52.3 8.6 118 156-276 199-322 (491)
275 KOG1562 Spermidine synthase [A 96.1 0.013 2.9E-07 51.2 6.0 113 155-269 119-236 (337)
276 KOG2920 Predicted methyltransf 96.1 0.0034 7.4E-08 54.6 2.0 112 155-268 114-233 (282)
277 COG1565 Uncharacterized conser 95.8 0.026 5.7E-07 50.9 6.6 63 140-202 60-131 (370)
278 KOG1596 Fibrillarin and relate 95.8 0.064 1.4E-06 45.7 8.5 106 151-268 150-260 (317)
279 PRK09424 pntA NAD(P) transhydr 95.6 0.13 2.9E-06 49.1 11.0 99 155-268 162-284 (509)
280 COG0275 Predicted S-adenosylme 95.5 0.088 1.9E-06 46.4 8.6 74 155-235 21-101 (314)
281 KOG0024 Sorbitol dehydrogenase 95.5 0.04 8.7E-07 48.9 6.3 99 154-270 166-274 (354)
282 PF01795 Methyltransf_5: MraW 95.4 0.049 1.1E-06 48.5 6.7 75 155-236 18-99 (310)
283 KOG0822 Protein kinase inhibit 95.4 0.051 1.1E-06 51.2 6.8 121 140-267 350-476 (649)
284 COG0270 Dcm Site-specific DNA 95.3 0.096 2.1E-06 47.3 8.5 102 158-272 3-118 (328)
285 cd08283 FDH_like_1 Glutathione 95.3 0.078 1.7E-06 48.8 8.1 105 155-269 182-306 (386)
286 PF02005 TRM: N2,N2-dimethylgu 95.3 0.027 5.8E-07 51.8 4.9 103 157-269 49-154 (377)
287 PF04989 CmcI: Cephalosporin h 95.2 0.055 1.2E-06 45.3 6.1 104 157-270 32-148 (206)
288 PF07757 AdoMet_MTase: Predict 95.2 0.034 7.4E-07 41.3 4.2 46 139-188 43-88 (112)
289 PRK09880 L-idonate 5-dehydroge 95.2 0.12 2.6E-06 46.7 8.7 97 156-269 168-266 (343)
290 COG0286 HsdM Type I restrictio 95.1 0.26 5.6E-06 47.1 11.2 108 156-268 185-325 (489)
291 PF01861 DUF43: Protein of unk 95.0 0.29 6.2E-06 41.9 10.0 102 157-268 44-148 (243)
292 PF04445 SAM_MT: Putative SAM- 94.8 0.039 8.5E-07 47.1 4.2 83 159-242 77-163 (234)
293 COG3129 Predicted SAM-dependen 94.8 0.1 2.2E-06 44.3 6.5 83 156-242 77-165 (292)
294 PF11312 DUF3115: Protein of u 94.7 0.13 2.8E-06 45.6 7.2 114 157-270 86-243 (315)
295 COG1063 Tdh Threonine dehydrog 94.6 0.38 8.2E-06 43.8 10.5 98 157-271 168-271 (350)
296 KOG1227 Putative methyltransfe 94.5 0.024 5.2E-07 49.7 2.3 107 157-275 194-303 (351)
297 TIGR00027 mthyl_TIGR00027 meth 94.5 0.55 1.2E-05 40.9 10.8 107 158-268 82-196 (260)
298 PF03269 DUF268: Caenorhabditi 94.5 0.33 7.1E-06 38.9 8.4 108 158-278 2-120 (177)
299 PF11899 DUF3419: Protein of u 94.1 0.077 1.7E-06 48.8 4.8 58 212-269 275-334 (380)
300 cd08254 hydroxyacyl_CoA_DH 6-h 93.9 0.65 1.4E-05 41.3 10.5 93 155-268 163-262 (338)
301 PF00145 DNA_methylase: C-5 cy 93.9 0.1 2.3E-06 46.5 5.2 97 160-272 2-112 (335)
302 TIGR00675 dcm DNA-methyltransf 93.9 0.2 4.4E-06 44.9 7.0 98 161-272 1-110 (315)
303 PF11599 AviRa: RRNA methyltra 93.9 0.33 7.2E-06 40.8 7.5 116 155-270 49-215 (246)
304 PF00107 ADH_zinc_N: Zinc-bind 93.6 0.29 6.4E-06 37.2 6.7 86 167-272 1-92 (130)
305 cd08237 ribitol-5-phosphate_DH 93.5 0.53 1.1E-05 42.5 9.1 93 155-269 161-256 (341)
306 PRK10458 DNA cytosine methylas 93.5 0.89 1.9E-05 43.1 10.8 45 157-201 87-131 (467)
307 PRK11524 putative methyltransf 93.4 0.32 7E-06 42.9 7.5 59 138-202 194-252 (284)
308 COG3510 CmcI Cephalosporin hyd 93.3 0.19 4.2E-06 41.4 5.3 103 156-271 68-182 (237)
309 PF01555 N6_N4_Mtase: DNA meth 93.3 0.32 6.9E-06 40.7 6.9 57 136-198 175-231 (231)
310 TIGR00561 pntA NAD(P) transhyd 93.1 0.38 8.1E-06 46.0 7.7 97 156-267 162-282 (511)
311 KOG2651 rRNA adenine N-6-methy 93.1 0.27 5.8E-06 44.7 6.2 44 155-198 151-194 (476)
312 TIGR02822 adh_fam_2 zinc-bindi 92.9 1.2 2.6E-05 40.0 10.5 92 155-270 163-255 (329)
313 KOG1099 SAM-dependent methyltr 92.5 0.25 5.5E-06 41.8 5.0 92 159-267 43-161 (294)
314 cd08232 idonate-5-DH L-idonate 92.4 0.69 1.5E-05 41.4 8.3 95 157-268 165-261 (339)
315 PRK11524 putative methyltransf 92.3 0.15 3.2E-06 45.1 3.7 56 213-268 8-79 (284)
316 cd05188 MDR Medium chain reduc 92.3 0.53 1.1E-05 40.2 7.1 98 156-270 133-233 (271)
317 COG1867 TRM1 N2,N2-dimethylgua 92.2 0.46 1E-05 43.1 6.6 100 158-269 53-154 (380)
318 cd08230 glucose_DH Glucose deh 92.2 0.98 2.1E-05 40.9 9.1 96 156-270 171-270 (355)
319 KOG2198 tRNA cytosine-5-methyl 91.9 1.2 2.5E-05 40.5 8.8 109 155-269 153-296 (375)
320 PTZ00357 methyltransferase; Pr 91.8 0.7 1.5E-05 45.3 7.7 105 159-264 702-830 (1072)
321 PRK13699 putative methylase; P 91.5 0.89 1.9E-05 38.8 7.5 59 138-202 149-207 (227)
322 PLN03154 putative allyl alcoho 91.4 0.98 2.1E-05 41.0 8.0 98 155-269 156-258 (348)
323 cd00401 AdoHcyase S-adenosyl-L 90.3 1.3 2.8E-05 41.4 7.8 88 156-269 200-289 (413)
324 PF10354 DUF2431: Domain of un 90.2 1.2 2.6E-05 36.1 6.7 99 164-268 3-124 (166)
325 PF02254 TrkA_N: TrkA-N domain 90.0 2.9 6.4E-05 31.0 8.4 85 166-268 4-95 (116)
326 TIGR02825 B4_12hDH leukotriene 89.8 4.4 9.6E-05 36.0 10.8 96 155-268 136-236 (325)
327 cd08245 CAD Cinnamyl alcohol d 89.7 3.7 7.9E-05 36.5 10.2 96 155-269 160-256 (330)
328 PRK13699 putative methylase; P 89.7 0.36 7.9E-06 41.2 3.5 53 215-267 3-70 (227)
329 TIGR01202 bchC 2-desacetyl-2-h 89.7 2.2 4.7E-05 37.9 8.6 86 157-269 144-231 (308)
330 cd08255 2-desacetyl-2-hydroxye 89.6 3.7 8E-05 35.4 9.9 93 155-268 95-189 (277)
331 COG0686 Ald Alanine dehydrogen 89.4 1.1 2.3E-05 40.0 6.1 100 156-267 166-266 (371)
332 KOG1253 tRNA methyltransferase 89.4 0.36 7.9E-06 45.3 3.4 104 155-269 107-216 (525)
333 TIGR03451 mycoS_dep_FDH mycoth 88.5 1.8 3.9E-05 39.3 7.3 99 155-270 174-277 (358)
334 PRK01747 mnmC bifunctional tRN 88.4 1.3 2.8E-05 44.0 6.8 112 156-267 56-204 (662)
335 cd08239 THR_DH_like L-threonin 88.4 1.7 3.7E-05 38.9 7.1 98 155-269 161-262 (339)
336 PF05711 TylF: Macrocin-O-meth 88.3 2.2 4.7E-05 36.9 7.3 107 156-270 73-213 (248)
337 cd08293 PTGR2 Prostaglandin re 88.3 5.1 0.00011 35.8 10.2 93 159-268 156-253 (345)
338 TIGR03201 dearomat_had 6-hydro 88.0 2.8 6.1E-05 37.8 8.3 45 155-199 164-209 (349)
339 PF07279 DUF1442: Protein of u 87.7 9.5 0.00021 32.2 10.4 118 137-273 28-152 (218)
340 cd08281 liver_ADH_like1 Zinc-d 87.6 1.9 4E-05 39.4 6.9 99 155-270 189-291 (371)
341 cd08295 double_bond_reductase_ 87.2 3.5 7.5E-05 37.0 8.3 97 155-268 149-250 (338)
342 cd08294 leukotriene_B4_DH_like 87.0 7.8 0.00017 34.2 10.5 96 155-268 141-240 (329)
343 KOG2078 tRNA modification enzy 86.9 0.31 6.8E-06 44.9 1.3 64 155-223 247-310 (495)
344 COG0604 Qor NADPH:quinone redu 86.8 3.2 7E-05 37.4 7.9 100 155-272 140-244 (326)
345 TIGR03366 HpnZ_proposed putati 86.8 6.6 0.00014 34.2 9.7 98 156-271 119-220 (280)
346 PF03514 GRAS: GRAS domain fam 86.7 3.9 8.4E-05 37.7 8.4 111 155-270 108-244 (374)
347 cd08234 threonine_DH_like L-th 86.7 7.1 0.00015 34.6 10.1 95 155-269 157-257 (334)
348 KOG2352 Predicted spermine/spe 86.2 1 2.2E-05 42.4 4.3 105 157-268 295-415 (482)
349 COG1255 Uncharacterized protei 86.2 6.3 0.00014 29.8 7.6 87 157-268 13-101 (129)
350 TIGR00518 alaDH alanine dehydr 86.2 1.3 2.9E-05 40.7 5.1 99 157-267 166-265 (370)
351 COG3315 O-Methyltransferase in 86.0 5.4 0.00012 35.5 8.7 106 158-269 93-209 (297)
352 PRK10309 galactitol-1-phosphat 85.1 3.3 7.1E-05 37.3 7.1 98 155-270 158-261 (347)
353 cd05285 sorbitol_DH Sorbitol d 84.6 11 0.00025 33.6 10.4 96 155-268 160-264 (343)
354 cd05278 FDH_like Formaldehyde 84.5 4.1 8.9E-05 36.4 7.5 96 155-268 165-266 (347)
355 cd08261 Zn_ADH7 Alcohol dehydr 84.5 4.2 9.2E-05 36.3 7.5 97 155-269 157-258 (337)
356 PF04072 LCM: Leucine carboxyl 83.7 4 8.7E-05 33.4 6.4 94 159-256 80-183 (183)
357 PRK07417 arogenate dehydrogena 83.3 9.8 0.00021 33.3 9.1 84 160-265 2-87 (279)
358 TIGR00936 ahcY adenosylhomocys 83.2 5.4 0.00012 37.2 7.6 88 156-269 193-282 (406)
359 PLN02586 probable cinnamyl alc 82.4 6.1 0.00013 35.9 7.7 95 156-269 182-278 (360)
360 PLN02740 Alcohol dehydrogenase 82.1 7.3 0.00016 35.7 8.2 99 155-270 196-301 (381)
361 COG4017 Uncharacterized protei 82.0 1.8 4E-05 35.7 3.6 73 155-246 42-115 (254)
362 COG0287 TyrA Prephenate dehydr 81.6 4.8 0.0001 35.5 6.4 87 159-265 4-94 (279)
363 PRK05708 2-dehydropantoate 2-r 81.1 12 0.00026 33.3 9.0 104 159-273 3-108 (305)
364 KOG0821 Predicted ribosomal RN 80.3 1.7 3.8E-05 36.7 3.0 61 157-224 50-110 (326)
365 PF05206 TRM13: Methyltransfer 80.1 6.6 0.00014 34.2 6.7 35 156-190 17-57 (259)
366 PRK05476 S-adenosyl-L-homocyst 80.1 7 0.00015 36.6 7.3 87 157-269 211-299 (425)
367 cd08285 NADP_ADH NADP(H)-depen 79.8 23 0.0005 31.7 10.6 97 155-269 164-266 (351)
368 PRK07502 cyclohexadienyl dehyd 79.8 7.4 0.00016 34.6 7.2 89 159-267 7-98 (307)
369 cd08238 sorbose_phosphate_red 79.5 27 0.00058 32.3 11.1 101 155-268 173-287 (410)
370 TIGR00497 hsdM type I restrict 79.4 16 0.00035 35.0 9.7 44 157-200 217-265 (501)
371 COG0541 Ffh Signal recognition 79.1 9.7 0.00021 35.6 7.7 109 156-273 98-225 (451)
372 cd08242 MDR_like Medium chain 79.0 20 0.00043 31.5 9.8 91 155-268 153-244 (319)
373 PF11899 DUF3419: Protein of u 78.8 6.2 0.00013 36.4 6.4 46 155-201 33-78 (380)
374 cd08300 alcohol_DH_class_III c 78.6 26 0.00056 31.8 10.6 99 155-270 184-289 (368)
375 cd08231 MDR_TM0436_like Hypoth 78.5 24 0.00052 31.7 10.3 95 157-269 177-280 (361)
376 PLN02514 cinnamyl-alcohol dehy 78.3 14 0.00031 33.4 8.7 96 156-270 179-276 (357)
377 PLN02827 Alcohol dehydrogenase 78.2 18 0.00039 33.1 9.4 98 155-269 191-295 (378)
378 PRK08267 short chain dehydroge 78.1 26 0.00056 29.8 9.9 70 160-239 3-86 (260)
379 TIGR02818 adh_III_F_hyde S-(hy 77.9 27 0.00057 31.8 10.4 99 155-270 183-288 (368)
380 PRK03562 glutathione-regulated 77.7 18 0.00039 35.8 9.7 93 158-268 400-497 (621)
381 PF03686 UPF0146: Uncharacteri 77.5 4 8.6E-05 31.4 4.0 88 157-269 13-102 (127)
382 PF05050 Methyltransf_21: Meth 77.1 4.3 9.4E-05 31.9 4.5 37 163-199 1-42 (167)
383 cd08277 liver_alcohol_DH_like 76.9 31 0.00068 31.2 10.6 99 155-270 182-287 (365)
384 PRK05786 fabG 3-ketoacyl-(acyl 76.9 26 0.00056 29.2 9.5 103 158-269 5-135 (238)
385 COG1748 LYS9 Saccharopine dehy 76.8 8.9 0.00019 35.5 6.8 72 159-240 2-78 (389)
386 cd08236 sugar_DH NAD(P)-depend 76.7 10 0.00022 33.8 7.2 97 155-269 157-258 (343)
387 cd01842 SGNH_hydrolase_like_5 76.4 6.3 0.00014 32.2 5.1 44 227-270 47-100 (183)
388 PLN02494 adenosylhomocysteinas 76.3 6.3 0.00014 37.4 5.8 88 157-269 253-341 (477)
389 PF02153 PDH: Prephenate dehyd 76.2 4.2 9.1E-05 35.3 4.4 74 172-266 2-76 (258)
390 cd08296 CAD_like Cinnamyl alco 76.2 11 0.00023 33.7 7.2 98 155-269 161-259 (333)
391 COG2933 Predicted SAM-dependen 76.1 8 0.00017 33.8 5.8 35 155-190 209-243 (358)
392 PRK08306 dipicolinate synthase 75.1 9.9 0.00021 33.8 6.5 87 157-266 151-238 (296)
393 COG5379 BtaA S-adenosylmethion 75.0 5.3 0.00011 35.4 4.5 73 186-269 292-366 (414)
394 PF01210 NAD_Gly3P_dh_N: NAD-d 75.0 7.6 0.00016 30.8 5.3 98 161-267 2-101 (157)
395 PRK05872 short chain dehydroge 74.8 36 0.00078 29.8 10.1 75 157-240 8-95 (296)
396 cd08233 butanediol_DH_like (2R 74.5 15 0.00032 33.0 7.7 98 155-269 170-272 (351)
397 KOG2671 Putative RNA methylase 74.4 2.1 4.7E-05 38.6 2.1 111 155-270 206-355 (421)
398 PLN02178 cinnamyl-alcohol dehy 74.4 13 0.00029 34.0 7.4 95 156-270 177-274 (375)
399 PRK12921 2-dehydropantoate 2-r 74.3 26 0.00057 30.8 9.1 99 160-270 2-103 (305)
400 PRK09496 trkA potassium transp 74.3 42 0.0009 31.4 10.9 68 157-237 230-304 (453)
401 TIGR02819 fdhA_non_GSH formald 73.8 28 0.00061 32.1 9.5 105 155-270 183-300 (393)
402 PRK08265 short chain dehydroge 73.8 42 0.0009 28.7 10.1 71 158-239 6-89 (261)
403 PRK07533 enoyl-(acyl carrier p 73.7 37 0.00079 29.0 9.7 103 157-268 9-147 (258)
404 PRK07066 3-hydroxybutyryl-CoA 73.6 13 0.00027 33.6 6.8 99 158-264 7-114 (321)
405 PRK08324 short chain dehydroge 73.3 23 0.00049 35.4 9.3 103 157-268 421-556 (681)
406 PF02558 ApbA: Ketopantoate re 73.2 14 0.00031 28.6 6.5 102 161-272 1-104 (151)
407 cd08298 CAD2 Cinnamyl alcohol 73.0 37 0.00081 29.9 9.9 91 155-269 165-256 (329)
408 PRK06522 2-dehydropantoate 2-r 72.8 31 0.00067 30.2 9.2 99 160-271 2-102 (304)
409 TIGR00692 tdh L-threonine 3-de 72.7 45 0.00098 29.7 10.4 96 156-269 160-261 (340)
410 PRK03659 glutathione-regulated 72.6 28 0.00061 34.2 9.6 90 159-268 401-497 (601)
411 cd08263 Zn_ADH10 Alcohol dehyd 71.8 39 0.00085 30.5 9.9 94 156-269 186-287 (367)
412 PRK06249 2-dehydropantoate 2-r 71.7 18 0.00039 32.3 7.4 103 157-271 4-108 (313)
413 PRK10669 putative cation:proto 70.8 37 0.0008 33.0 9.9 90 159-268 418-514 (558)
414 cd08241 QOR1 Quinone oxidoredu 70.8 50 0.0011 28.5 10.1 95 155-268 137-237 (323)
415 COG1568 Predicted methyltransf 70.5 14 0.0003 32.5 6.0 103 156-268 151-259 (354)
416 COG1893 ApbA Ketopantoate redu 70.5 31 0.00066 30.9 8.6 100 160-271 2-103 (307)
417 cd05289 MDR_like_2 alcohol deh 70.4 43 0.00094 28.7 9.5 94 155-268 142-237 (309)
418 PF02826 2-Hacid_dh_C: D-isome 69.6 6.4 0.00014 32.0 3.8 38 157-194 35-73 (178)
419 PRK08085 gluconate 5-dehydroge 68.4 64 0.0014 27.2 10.0 74 158-239 9-95 (254)
420 cd08278 benzyl_alcohol_DH Benz 68.3 14 0.00031 33.5 6.1 97 155-270 184-286 (365)
421 cd05281 TDH Threonine dehydrog 68.2 54 0.0012 29.2 9.9 96 156-269 162-262 (341)
422 PF01488 Shikimate_DH: Shikima 67.9 7.8 0.00017 30.0 3.8 75 157-242 11-87 (135)
423 cd08265 Zn_ADH3 Alcohol dehydr 67.8 37 0.0008 31.0 8.8 97 155-268 201-306 (384)
424 cd05288 PGDH Prostaglandin deh 67.7 66 0.0014 28.2 10.3 95 155-268 143-243 (329)
425 cd05213 NAD_bind_Glutamyl_tRNA 67.5 29 0.00063 31.0 7.8 40 157-196 177-218 (311)
426 cd08301 alcohol_DH_plants Plan 67.4 59 0.0013 29.4 10.1 99 155-270 185-290 (369)
427 PF06690 DUF1188: Protein of u 67.2 48 0.001 28.4 8.4 69 159-246 43-112 (252)
428 PRK08507 prephenate dehydrogen 67.1 35 0.00076 29.7 8.2 84 160-266 2-88 (275)
429 PRK07984 enoyl-(acyl carrier p 66.9 82 0.0018 27.1 10.4 74 158-240 6-94 (262)
430 PRK09496 trkA potassium transp 66.8 61 0.0013 30.2 10.3 89 160-267 2-97 (453)
431 PRK08277 D-mannonate oxidoredu 66.2 50 0.0011 28.3 9.0 74 158-239 10-96 (278)
432 TIGR00872 gnd_rel 6-phosphoglu 65.7 23 0.00049 31.4 6.8 86 160-265 2-89 (298)
433 COG5379 BtaA S-adenosylmethion 65.4 15 0.00033 32.6 5.3 46 155-201 61-106 (414)
434 PTZ00075 Adenosylhomocysteinas 65.3 19 0.00042 34.2 6.4 86 157-268 253-340 (476)
435 cd08291 ETR_like_1 2-enoyl thi 64.8 73 0.0016 28.1 10.0 94 158-269 143-242 (324)
436 PRK12823 benD 1,6-dihydroxycyc 64.6 84 0.0018 26.5 10.0 72 158-238 8-92 (260)
437 cd08267 MDR1 Medium chain dehy 64.6 64 0.0014 27.9 9.5 97 155-268 141-239 (319)
438 cd08246 crotonyl_coA_red croto 64.4 89 0.0019 28.5 10.7 44 155-198 191-236 (393)
439 cd08243 quinone_oxidoreductase 63.8 78 0.0017 27.4 9.9 95 155-269 140-238 (320)
440 cd08270 MDR4 Medium chain dehy 63.8 92 0.002 26.9 10.3 89 157-269 132-222 (305)
441 cd08266 Zn_ADH_like1 Alcohol d 63.7 82 0.0018 27.5 10.1 95 155-268 164-264 (342)
442 PRK10083 putative oxidoreducta 63.7 35 0.00075 30.3 7.7 98 155-269 158-259 (339)
443 cd05286 QOR2 Quinone oxidoredu 63.7 89 0.0019 26.8 10.2 93 155-268 134-234 (320)
444 cd05283 CAD1 Cinnamyl alcohol 63.4 55 0.0012 29.1 8.9 96 155-269 167-263 (337)
445 cd08274 MDR9 Medium chain dehy 63.3 81 0.0018 27.9 10.1 92 155-268 175-272 (350)
446 PRK05396 tdh L-threonine 3-deh 63.1 87 0.0019 27.8 10.2 95 157-269 163-263 (341)
447 cd08279 Zn_ADH_class_III Class 63.0 80 0.0017 28.4 10.0 94 155-269 180-282 (363)
448 cd01065 NAD_bind_Shikimate_DH 62.6 32 0.00069 26.7 6.5 44 157-200 18-63 (155)
449 PRK07109 short chain dehydroge 62.3 60 0.0013 29.1 9.0 74 158-239 8-94 (334)
450 PRK06701 short chain dehydroge 62.1 49 0.0011 28.9 8.2 104 157-268 45-180 (290)
451 PRK14620 NAD(P)H-dependent gly 61.9 84 0.0018 28.0 9.8 102 160-270 2-107 (326)
452 PRK15001 SAM-dependent 23S rib 61.6 85 0.0018 29.0 9.8 99 160-272 47-145 (378)
453 PTZ00354 alcohol dehydrogenase 61.5 1E+02 0.0022 26.9 10.3 96 155-268 138-239 (334)
454 cd08286 FDH_like_ADH2 formalde 61.3 40 0.00088 30.0 7.7 96 155-268 164-265 (345)
455 PRK08655 prephenate dehydrogen 61.2 33 0.00071 32.3 7.2 85 160-266 2-89 (437)
456 PRK02318 mannitol-1-phosphate 60.8 15 0.00032 33.9 4.8 39 160-199 2-43 (381)
457 PRK07985 oxidoreductase; Provi 60.3 81 0.0018 27.6 9.3 104 157-268 48-184 (294)
458 PRK12491 pyrroline-5-carboxyla 60.2 62 0.0014 28.3 8.4 86 160-267 4-94 (272)
459 COG0569 TrkA K+ transport syst 60.0 43 0.00093 28.4 7.2 66 160-237 2-73 (225)
460 PF03446 NAD_binding_2: NAD bi 60.0 23 0.00049 28.2 5.2 87 160-268 3-93 (163)
461 PRK07680 late competence prote 59.3 51 0.0011 28.6 7.7 87 160-266 2-93 (273)
462 PRK06484 short chain dehydroge 59.3 69 0.0015 30.5 9.3 72 157-239 4-88 (520)
463 PRK00094 gpsA NAD(P)H-dependen 59.1 92 0.002 27.5 9.6 100 160-269 3-105 (325)
464 KOG1201 Hydroxysteroid 17-beta 58.6 56 0.0012 29.1 7.6 74 156-238 36-122 (300)
465 cd08289 MDR_yhfp_like Yhfp put 57.9 45 0.00098 29.2 7.3 95 158-269 147-243 (326)
466 cd08292 ETR_like_2 2-enoyl thi 57.8 1E+02 0.0022 26.8 9.6 93 155-268 137-237 (324)
467 KOG0023 Alcohol dehydrogenase, 57.4 56 0.0012 29.5 7.4 99 155-269 179-279 (360)
468 PRK07806 short chain dehydroge 57.2 72 0.0016 26.7 8.2 103 158-268 6-133 (248)
469 KOG0022 Alcohol dehydrogenase, 57.0 42 0.00091 30.3 6.6 94 155-268 190-293 (375)
470 PRK06997 enoyl-(acyl carrier p 56.6 75 0.0016 27.1 8.3 102 158-268 6-144 (260)
471 KOG3924 Putative protein methy 56.4 24 0.00052 32.6 5.1 112 154-272 189-311 (419)
472 PRK15057 UDP-glucose 6-dehydro 56.4 1.6E+02 0.0034 27.3 10.7 40 160-200 2-42 (388)
473 TIGR02356 adenyl_thiF thiazole 55.9 18 0.00039 30.1 4.1 32 158-189 21-54 (202)
474 PLN02688 pyrroline-5-carboxyla 55.5 64 0.0014 27.7 7.7 85 160-266 2-92 (266)
475 KOG2918 Carboxymethyl transfer 55.1 1.1E+02 0.0024 27.5 8.9 117 156-273 86-230 (335)
476 cd05279 Zn_ADH1 Liver alcohol 54.7 1.5E+02 0.0032 26.7 10.3 96 155-269 181-285 (365)
477 TIGR01751 crot-CoA-red crotony 54.6 1.2E+02 0.0027 27.7 9.9 44 155-198 187-232 (398)
478 PLN00203 glutamyl-tRNA reducta 54.3 55 0.0012 31.7 7.5 44 157-200 265-310 (519)
479 cd01487 E1_ThiF_like E1_ThiF_l 54.3 47 0.001 26.9 6.2 31 160-190 1-33 (174)
480 PRK12937 short chain dehydroge 54.0 1.3E+02 0.0028 25.0 9.3 103 157-268 4-138 (245)
481 PRK06505 enoyl-(acyl carrier p 54.0 1.3E+02 0.0029 25.8 9.5 102 158-268 7-144 (271)
482 PRK06079 enoyl-(acyl carrier p 53.9 1.4E+02 0.0029 25.3 10.2 101 157-268 6-142 (252)
483 cd08297 CAD3 Cinnamyl alcohol 53.9 1.6E+02 0.0034 26.0 10.3 95 155-268 163-264 (341)
484 PRK06484 short chain dehydroge 53.8 1.4E+02 0.0029 28.5 10.3 101 157-268 268-399 (520)
485 KOG2912 Predicted DNA methylas 53.8 41 0.00089 30.3 6.0 75 161-240 106-188 (419)
486 cd05292 LDH_2 A subgroup of L- 53.5 1.3E+02 0.0027 26.8 9.4 101 160-270 2-117 (308)
487 KOG0780 Signal recognition par 53.4 80 0.0017 29.4 7.9 92 172-272 122-225 (483)
488 PLN02819 lysine-ketoglutarate 53.3 28 0.00061 36.6 5.7 71 157-238 568-656 (1042)
489 PF03721 UDPG_MGDP_dh_N: UDP-g 53.3 32 0.00069 28.2 5.1 110 160-273 2-123 (185)
490 PF10237 N6-adenineMlase: Prob 53.3 1.2E+02 0.0026 24.4 10.8 93 157-268 25-122 (162)
491 PRK08415 enoyl-(acyl carrier p 52.6 1.5E+02 0.0033 25.5 9.9 102 158-268 5-142 (274)
492 PRK07889 enoyl-(acyl carrier p 51.8 1.4E+02 0.003 25.3 9.2 100 158-268 7-144 (256)
493 TIGR02437 FadB fatty oxidation 51.5 52 0.0011 33.2 7.2 102 157-267 312-426 (714)
494 PRK06500 short chain dehydroge 51.5 1.4E+02 0.0031 24.8 9.3 69 158-238 6-88 (249)
495 PLN02256 arogenate dehydrogena 51.1 1.1E+02 0.0024 27.3 8.5 85 156-263 34-121 (304)
496 PF01555 N6_N4_Mtase: DNA meth 51.0 7.6 0.00017 32.2 1.1 21 248-268 35-55 (231)
497 PF02737 3HCDH_N: 3-hydroxyacy 50.6 40 0.00087 27.4 5.3 99 161-268 2-113 (180)
498 PRK05875 short chain dehydroge 50.6 1.3E+02 0.0029 25.6 9.0 74 158-238 7-94 (276)
499 PTZ00117 malate dehydrogenase; 50.5 1.6E+02 0.0034 26.4 9.5 105 157-270 4-123 (319)
500 PRK12744 short chain dehydroge 50.5 1.5E+02 0.0033 24.9 9.6 101 158-267 8-143 (257)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.96 E-value=1.4e-29 Score=209.31 Aligned_cols=173 Identities=53% Similarity=1.017 Sum_probs=138.6
Q ss_pred hhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC
Q 023288 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (284)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (284)
.+.||+++.+||++++.+.+||+|||+.+++.|+.+++.||..+...... ......++||+|||.|+.|..++.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999987654321 1345679999999999999999889999
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCC
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+|+.||+++.+++.|++.+.... ....++++..++++.+++++||+||+.|++.|++++++..+|++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccC------CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998876521 245789999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCCc-ccCCCC
Q 023288 262 GGFFVLKENIARSGT-FLLSHS 282 (284)
Q Consensus 262 GG~lii~e~~~~~~~-~~d~~~ 282 (284)
+|.+++.||+..++. ++|++|
T Consensus 154 ~G~IvvKEN~~~~~~~~~D~~D 175 (218)
T PF05891_consen 154 NGVIVVKENVSSSGFDEFDEED 175 (218)
T ss_dssp EEEEEEEEEEESSSEEEEETTT
T ss_pred CcEEEEEecCCCCCCcccCCcc
Confidence 999999999999886 788776
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=1e-23 Score=178.93 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred cCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC
Q 023288 125 GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (284)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~ 203 (284)
..|+.+++....+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+|+|+|+.||+.|+++....
T Consensus 22 ~~YD~~n~~~S~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 22 KKYDLMNDLMSFGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHHhhcccccCcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc
Confidence 334444444444444455555554444 347899999999999999988876533 7999999999999999999875
Q ss_pred CCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+. .+++|+.+|++++|+++++||+|.+++.|++++ +...+|++++|+|||||.+++.|...+..
T Consensus 99 ~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 99 GV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred Cc------cceEEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 53 348999999999999999999999999999999 66799999999999999999999766543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.89 E-value=1.2e-23 Score=179.83 Aligned_cols=148 Identities=19% Similarity=0.212 Sum_probs=89.3
Q ss_pred cccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHH
Q 023288 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLD 194 (284)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~ 194 (284)
...|+.+...|+.+++....+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+|+|+|+.|++
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~---~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG---LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ---------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC---CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 34444455555554443333333333333333322 567789999999999999988865432 7999999999999
Q ss_pred HHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 195 ~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.|+++....+. .+++++++|++++|+++++||+|++++.+++++ +...++++++|+|||||++++.|...+.
T Consensus 87 ~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 87 VARKKLKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999875432 479999999999999999999999999999999 6679999999999999999999976665
Q ss_pred C
Q 023288 275 G 275 (284)
Q Consensus 275 ~ 275 (284)
.
T Consensus 159 ~ 159 (233)
T PF01209_consen 159 N 159 (233)
T ss_dssp S
T ss_pred C
Confidence 4
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=9e-21 Score=165.37 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=96.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+|+|+|++|++.|+++...... ....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 45678999999999999998876532 2799999999999999887531100 012468999999999999889999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+|++++++||++ +...+++++.|+|||||.+++.|...++.
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 999999999998 66799999999999999999999866543
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=1.3e-20 Score=168.10 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. ..++++++++++++++++++||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEE
Confidence 4567999999999999998886554 699999999999999988654221 2468899999998887778999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|++ +...+++++.++|||||.+++...
T Consensus 204 ~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999999 556999999999999999999864
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.83 E-value=3.8e-20 Score=135.79 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.6
Q ss_pred EEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhc
Q 023288 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~ 241 (284)
||+|||+|..+..+++....+|+++|+|+.+++.++++... .++.+...|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999988877455799999999999999999875 335599999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 242 ~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 996 777999999999999999986
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=6.5e-20 Score=153.48 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=115.4
Q ss_pred CCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHH
Q 023288 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES 199 (284)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~ar~~ 199 (284)
|+.+++....+..+.+.+.+...+. +.++.++||++||||.++..+++... .+|+++|+||+||+.++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 4445666666777777777777766 67789999999999999999987532 2799999999999999999
Q ss_pred cCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
....++. ....+.++++|++++|+++.+||..++.+.+.+++ ++.+.+++++|+|||||+|.+.|...
T Consensus 150 a~~~~l~---~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 150 AKKRPLK---ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HhhcCCC---cCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 8665542 12348899999999999999999999999999999 66699999999999999999988643
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=1.7e-19 Score=163.13 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=96.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....+. ..++++.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 56789999999999999988876555799999999999999998765443 3568999999999988889999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+..+++|++ +...+++++.++|||||.|++.+.+.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999998 66699999999999999999987653
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.80 E-value=9.5e-19 Score=152.82 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=97.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+.+.|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 567889999999999999988765444799999999999999998754 246889999998888888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++.++...++++++++|||||.|+++|.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999999877888999999999999999999987554
No 10
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=9.5e-19 Score=146.49 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=91.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|..+..+++++. +|+|+|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEE
Confidence 3567999999999999999987765 599999999999999988766443 3478888998887664 5799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.++||+++++...+++++.++|||||.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999988889999999999999999976654
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=6.8e-19 Score=133.64 Aligned_cols=107 Identities=24% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~I 234 (284)
|+.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|++++...+. ..++++++.|+ ...... +.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 4679999999999999999982 334799999999999999999832222 47899999999 333333 579999
Q ss_pred Eecc-hhccCC-hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~-~l~~~~-~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.+ +++++. .++...+++++.+.|+|||+|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 666444 3567899999999999999999975
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.79 E-value=1.3e-18 Score=149.16 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+|+|+|+.|++.++++....+. .+++++++|+.++++++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 45678999999999999998886632 2799999999999999998765432 468899999988887778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+|++..++++++ +...+++++.++|+|||.+++.|...+
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999999998 666999999999999999999886543
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=2.4e-19 Score=149.98 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=92.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||.|.++..+++.+.. |+|+|+|+.+|+.|+.+....++ ++++.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccEEEE
Confidence 6789999999999999999988865 99999999999999999887643 477888888777655579999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+++|+++++ .+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccc
Confidence 99999999554 8999999999999999998653
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=2.2e-18 Score=149.31 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=94.7
Q ss_pred CCCceEEEeeccccHHHHHHHHh--CC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.++.+|||+|||+|..+..+++. .. .+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCC
Confidence 36679999999999999888763 22 2799999999999999999875433 34689999999887754 599
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|+++.++||+++++...++++++++|||||.|+++|.+...
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 999999999999777889999999999999999999976543
No 15
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=7e-19 Score=148.18 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=90.0
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+++.......+.....++++.+.+++.+. +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 57899999999999999996665 59999999999999999965544333333335777888887764 459999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.+++|+. ++..+++.+.++|||||.++++...
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 6779999999999999999998653
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.78 E-value=2.1e-18 Score=150.77 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=90.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+++.+|||||||+|.++..+++++..+|+|+.+|+++.+.+++++...|+ ..++++...|..+++ .+||.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~~~---~~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRDLP---GKFDR 130 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccccC---CCCCE
Confidence 3789999999999999999999988555799999999999999999988776 456889999988765 38999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..+++|+..+++..+++++.++|||||.+++...+..+
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999999999889999999999999999999987655443
No 17
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.7e-18 Score=147.56 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++.++++.+..+|+|+++|+++.+.+++++...|+ ..++++...|..++. +.||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999988766899999999999999999888776 457889999988865 459999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|+..+....+|+++.++|+|||.+++......+
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999998765444
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=2.9e-18 Score=137.65 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=91.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
+++.+|||+|||+|.++..++... ..+++|+|+|+.|++.|++++...++ .+++|.+.|+.+++ ++ +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCe
Confidence 357899999999999999988542 23799999999999999998765443 47999999999976 44 799
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++..+++|++ +...+++++.++|+|||.+++.+..
T Consensus 75 D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999 5569999999999999999998764
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=7.2e-18 Score=140.95 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++.++. +|+|+|+|+.|++.++++....++ ++.+...|+...+++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 467999999999999999987766 599999999999999988765432 256777777665554 58999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.++||++.++...+++++.++|||||++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999877888999999999999999776653
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=8.3e-18 Score=145.00 Aligned_cols=112 Identities=14% Similarity=0.265 Sum_probs=94.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.++.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence 366799999999999999888753 22799999999999999998765322 24688999999988765 589
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|+++.++||+++++...+++++.++|||||.|+++|.+..+
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 999999999999888889999999999999999999976543
No 21
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.76 E-value=1.2e-18 Score=130.08 Aligned_cols=96 Identities=24% Similarity=0.469 Sum_probs=81.6
Q ss_pred EEEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
|||+|||+|..+..++... . .+++|+|+|+.|++.++++.... ..++++++.|+.+++..+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998764 2 48999999999999999998643 23689999999998877789999999
Q ss_pred cc-hhccCChhhHHHHHHHHHhcCCCCc
Q 023288 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 237 ~~-~l~~~~~~~~~~~l~~~~r~LkpGG 263 (284)
.. +++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 54 5999999999999999999999998
No 22
>PRK05785 hypothetical protein; Provisional
Probab=99.75 E-value=3.5e-18 Score=145.92 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=82.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||||.++..+++....+|+|+|+|++|++.|+++. .++++|++++|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999888764347999999999999998642 2467899999998999999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++++||++ +...++++++|+|||. +.+.|...+
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 99999998 6679999999999994 334454333
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=2.2e-17 Score=143.34 Aligned_cols=102 Identities=18% Similarity=0.348 Sum_probs=88.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.++++... ..++++|++++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence 356789999999999999887655 4699999999999999987532 4578899999888888999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.++++++ +...++.++.++|||||.++++...
T Consensus 109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999988 6679999999999999999998643
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=1.1e-17 Score=145.53 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=85.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ ++++.++|+.+++ ++++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence 456789999999999999988877532 799999999999999763 2678889998774 4579999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++.++||++ +...++++++++|||||.+++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 56699999999999999999863
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=1.2e-17 Score=145.29 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=90.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence 3567999999999999999987754 699999999999999999876543 356889999987764 445799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+++|++ +...+++++.++|||||.+++..
T Consensus 117 ~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999998 45599999999999999998864
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.73 E-value=1e-16 Score=134.73 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999887652 3479999999999999998753 25677888877 6777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+++.+++|++++++..+++++.+++ ++.+++.|...+.
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999999998888999999999998 5788888875443
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=6.9e-17 Score=144.79 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=89.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+..++......+. ..++.+..+++++++. +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 45689999999999999999888777899999999999865543221110 2468899999999887 67999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|..+++|.. +...+++++++.|+|||.+++...
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999988 666999999999999999998654
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=5.5e-17 Score=143.55 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+ .++++.+.|+....+ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 345999999999999999987765 59999999999999998876543 257788888877655 478999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.++||++.++...+++++.++|+|||++++.+
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999988889999999999999999977754
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.71 E-value=1.6e-16 Score=150.21 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=94.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ..+++|.++|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3567899999999999999888765447999999999999999876532 246889999999888777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++ +...++++++++|||||.+++.+.+..
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 566999999999999999999986543
No 30
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.71 E-value=1.8e-16 Score=133.93 Aligned_cols=126 Identities=12% Similarity=-0.026 Sum_probs=95.0
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC------CCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~------~~~~~ 211 (284)
+..++..++.... ..++.+|||+|||.|+.+..|+++++. |+|+|+|+.+++.+.+........ .....
T Consensus 19 p~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 19 VNPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 3445555544321 235679999999999999999988886 999999999999875432211000 00113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+++++++|+.+++.. .+.||.|+...+++|++.+....+++.+.++|||||++++.
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4689999999887643 35799999999999999888999999999999999976654
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=1.5e-16 Score=138.72 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=86.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++.. ++.+..+|+.++.. +++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQP-PQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCC-CCCccE
Confidence 45678999999999999998887653 379999999999999998753 36788899887653 359999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+++.++||++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 5669999999999999999985
No 32
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=1.2e-16 Score=140.41 Aligned_cols=110 Identities=24% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..++..... +|+++|+|+.|++.|+++....+. .++++..+|+.++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 457789999999999988766654332 699999999999999998765442 367899999998888778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+|+++.+++|.+ +...+++++.++|||||+|++++...
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999988 56689999999999999999988654
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.71 E-value=5.9e-17 Score=133.52 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=88.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.++||+|||.|+.+.+|+++|+. |+++|.|+..++.+++.+...+ ..++..+.|+.+..++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence 35789999999999999999999996 9999999999999988776543 3488899999988776 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|++.+.+..+++++...++|||++++...
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 99999999999999999999999999999888543
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.70 E-value=1.7e-16 Score=141.04 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=87.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+...|+|+|+|+.|+..++......+. ..++.+...++++++.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcCEE
Confidence 446789999999999999988877776899999999999865432111000 23577888888888754 489999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|..+++|.+ +...++++++++|||||.|++.+.+
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 9999999998 6669999999999999999997543
No 35
>PRK06922 hypothetical protein; Provisional
Probab=99.70 E-value=1.9e-16 Score=150.26 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
++.+|||+|||+|..+..++..... +|+|+|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 5689999999999999888765543 8999999999999999886542 235778889988876 67789999
Q ss_pred EEecchhccC-----------ChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~-----------~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|+++.++|++ +.++...+++++.++|||||.+++.|.+.+
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999999875 235678999999999999999999987544
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.69 E-value=1.9e-16 Score=135.08 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=90.2
Q ss_pred eEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||||||+|..+..+++.+. .+|+|+|+|+.+++.+++++...++ ..++++...|+...+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999999998887763 3799999999999999999876554 45688999998766554 5899999999
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+++|++ +...+++++.++|||||.+++.+..
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999998 5679999999999999999999864
No 37
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.69 E-value=4e-16 Score=133.80 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=89.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999988877654 68999999999999998764 247789999999887778999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++||+. +...++.++.++|+|||.+++.+.
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999998 566999999999999999999864
No 38
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=5.3e-16 Score=139.02 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..+++... .+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998876542 3799999999999999987542 35778999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+++.+++|++ +...+++++.++|||||.+++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999998 4458999999999999999987654
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.69 E-value=4.3e-18 Score=126.59 Aligned_cols=95 Identities=27% Similarity=0.433 Sum_probs=61.6
Q ss_pred EEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc---CCCCCCCCCCceeEEEec
Q 023288 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~fD~Iv~~ 237 (284)
||||||+|.++..+++.... +++++|+|+.|++.+++++..... .+...... +...... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDP-PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhccc-ccccceehhh
Confidence 79999999999999987433 799999999999888887765321 22223333 3322222 2599999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
.++||++ ++..+++++.++|||||.|
T Consensus 74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 9999995 7779999999999999986
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.69 E-value=1.9e-16 Score=138.21 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=88.4
Q ss_pred CCCceEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCCC----CCC---------------
Q 023288 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~~----~~~--------------- 206 (284)
.++.+|+|+|||||. ++..+++.+. .+|+|+|+|+.||+.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4444444322 27999999999999999864210 000
Q ss_pred --CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 207 --~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++...++++++++|+|||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00112468999999999877678999999999999999888889999999999999999996
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=4.7e-16 Score=146.98 Aligned_cols=110 Identities=23% Similarity=0.405 Sum_probs=93.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++.... ..++++++.|+.. +++++++||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence 356799999999999999888664 5799999999999988765332 3568899999863 5566789999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|+++++++|++++++..+++++.++|||||.+++.|++...
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 99999999999887899999999999999999999987543
No 42
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=2.9e-16 Score=128.16 Aligned_cols=104 Identities=27% Similarity=0.399 Sum_probs=84.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
..-.++||+|||.|.++..|+.+ +.+++++|+|+..++.|+++... ..++++.+.++.++. ++++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~-P~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFW-PEGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCC-CCCCeeEEE
Confidence 45578999999999999988744 56899999999999999999987 467999999998865 457999999
Q ss_pred ecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.+++|+.+ +++..++.++...|+|||.+++..
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999985 679999999999999999999974
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.68 E-value=1.8e-16 Score=127.73 Aligned_cols=98 Identities=28% Similarity=0.378 Sum_probs=79.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+...++ +++|+|+|+.+++. .. ......+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RN-----------VVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TT-----------SEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hh-----------hhhhhhhhhhhhccccchhhHh
Confidence 5778999999999999998876666 79999999999998 11 2222332233334567999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++.+++|++ +...+++++.++|||||.+++.+...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67799999999999999999998754
No 44
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=5.5e-16 Score=133.06 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=95.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+. ..++.+...|+.+.+.++++||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccE
Confidence 3568999999999999999987774 5899999999999999998765332 34688999999888776789999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|++..+++++. +...+++++.++|+|||.+++.|...+
T Consensus 125 I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 125 VTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred EEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 99999999988 667999999999999999999886543
No 45
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.67 E-value=1.7e-16 Score=129.08 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=92.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee-EEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD~ 233 (284)
.....|||+|||||..-.++-..-..+|+++|+++.|-+.+.+.+++.. ..++. |+.++.++++ .++++||.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeee
Confidence 3456789999999998774322222379999999999999999887642 34455 8899999998 78899999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
|++..+++-.. +..+.|+++.|+|||||++++.|++....
T Consensus 149 VV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y 188 (252)
T KOG4300|consen 149 VVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEY 188 (252)
T ss_pred EEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 99999998877 66799999999999999999999976543
No 46
>PRK08317 hypothetical protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=129.71 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=92.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+++++|+|+.+++.++++.... ..++++...|+..+++++++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 56778999999999999998887652 37999999999999999883321 3568899999988887778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..+++|++ +...+++++.++|||||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 566999999999999999999874
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=1.1e-15 Score=140.03 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++... ..+++...|..++ +++||.|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 567789999999999999988876545799999999999999998753 2367788887665 3689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++..++..+++++.++|||||.+++.+..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999998778889999999999999999997643
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=1.5e-15 Score=129.01 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=93.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||+|||+|..+..+++.+.. +++++|+++.+++.++++... ..++++..+|+.+.++++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence 36789999999999999999887764 799999999999999998752 34688999999988776779999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|+++.++++++ +...+++++.+.|+|||.+++.+...
T Consensus 110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988 66799999999999999999987644
No 49
>PRK06202 hypothetical protein; Provisional
Probab=99.66 E-value=1e-15 Score=131.34 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=84.2
Q ss_pred CCCceEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (284)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++... .++.+.+.+...++.++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999998877642 322 799999999999999988643 2355666666666656689
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
||+|+++.++||+++++...+++++.++++ |.+++.+..
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999999999998778899999999998 566666543
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=128.82 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=90.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.....+|.|+|||+|..+..++++.+. .++|+|-|+.|++.|+++. .+.+|..+|+.++.++ .++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence 567789999999999999988888776 8999999999999998885 4588999999998765 58999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++++-+|++++ +-..+|.++...|.|||+|.+.
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 99999999999 7779999999999999999996
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=1.8e-15 Score=125.25 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++....++ .+++++++|+.+++. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 478999999999999998876443 3799999999999999998877553 348999999988776 67999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.. . ++..+++.+.++|||||.+++.+..
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8752 2 5668999999999999999998643
No 52
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.65 E-value=1.7e-15 Score=136.59 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=136.8
Q ss_pred CchhhhhhhhhHHHHhhhhcccccCCCCCCccccccccCCCCCCcccCHHHHHHHHhcCCccchhhh-----------hH
Q 023288 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK-----------TQ 104 (284)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~-----------~~ 104 (284)
.-.-++.|||-+..++.+.+.+... -+....+.+.|....| .+++.++.+..... ......+ ..
T Consensus 77 ~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~-~~~~~ar~~~l~~~~~~~~~ 151 (342)
T PRK09489 77 CDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPL-NKIDSARRCGLYHGRLEKQP 151 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCc-cccccceeEEEEEEeccccC
Confidence 3445889999999999988876653 2235567788999999 67788777766421 1100000 00
Q ss_pred HHHHHhhchhcccccccccccCCCccccc-cccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-c
Q 023288 105 WYREGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-E 182 (284)
Q Consensus 105 ~~~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~ 182 (284)
.+ ...+||..... ..-.+....+++.. .+......+...+. .....+|||+|||+|.++..+++.+.. +
T Consensus 152 ~~-~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la~~~p~~~ 222 (342)
T PRK09489 152 VF-DADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLARHSPKIR 222 (342)
T ss_pred CC-cccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHHHhCCCCE
Confidence 01 11344543211 00011112222221 12222233333332 223458999999999999988877653 7
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCC---hhhHHHHHHHHHhcC
Q 023288 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGL 259 (284)
Q Consensus 183 v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~---~~~~~~~l~~~~r~L 259 (284)
|+++|+|+.|++.+++++...++ ..+++..|+... .+++||+|+++..+|+.. ......+++++.+.|
T Consensus 223 v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L 293 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAANGL-------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL 293 (342)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence 99999999999999998876543 245667776542 246899999999998642 234678999999999
Q ss_pred CCCcEEEEEecc
Q 023288 260 KPGGFFVLKENI 271 (284)
Q Consensus 260 kpGG~lii~e~~ 271 (284)
||||.++++-|.
T Consensus 294 kpgG~L~iVan~ 305 (342)
T PRK09489 294 NSGGELRIVANA 305 (342)
T ss_pred CcCCEEEEEEeC
Confidence 999999998763
No 53
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.64 E-value=4.4e-15 Score=125.92 Aligned_cols=125 Identities=11% Similarity=-0.019 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCC------CCCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~------~~~~~~ 211 (284)
...++...+... . ..++.+|||+|||.|..+..|+++++. |+|||+|+..++.+.+....... ......
T Consensus 22 p~~~L~~~~~~~-~---~~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 22 VNPLLQKYWPAL-A---LPAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CCHHHHHHHHhh-C---CCCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCcccccccccccccc
Confidence 344555544322 1 235679999999999999999988876 99999999999987543221100 001113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.++++.++|+.++... .+.||.|+...+++|++.+....+++.+.++|+|||++++
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5688999999988643 2589999999999999998999999999999999996444
No 54
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.64 E-value=4.7e-15 Score=132.48 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456689999999999999999988765 7999997 7999999998877654 35689999998765554 3799
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|+++.++|+.+++....++++++++|+|||++++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999877778899999999999999999997543
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=1.6e-15 Score=125.13 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=81.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.++++....++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 4679999999999999987755433 799999999999999988765442 358999999988643 46999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 43 34478899999999999999874
No 56
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.62 E-value=8.2e-15 Score=129.03 Aligned_cols=163 Identities=29% Similarity=0.461 Sum_probs=128.5
Q ss_pred hhhHHHHHHhhchhcccccccc-cccCCCcccc---ccccccHHHHHHHHHhhcCC--ccCCCCceEEEeeccccHHHHH
Q 023288 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKN 174 (284)
Q Consensus 101 ~~~~~~~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~--~~~~~~~~VLDiGcGtG~~s~~ 174 (284)
....+|+++..||.+...+.+| ++++|...+. .++.....++...+...+.+ .+...-...+|+|.|+|+.+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3446789999999999999999 7888887655 67777777777777643321 1122346899999999999999
Q ss_pred HHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHH
Q 023288 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (284)
Q Consensus 175 l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~ 254 (284)
++. .++++.++++....+..++..+. .| ++.+-+|+-.- .| +-|+||+.|++||++|+++.++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---------V~~v~gdmfq~-~P--~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---------VEHVAGDMFQD-TP--KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---------cceeccccccc-CC--CcCeEEEEeecccCChHHHHHHHHH
Confidence 997 66679999999999988887764 22 55666666554 22 3469999999999999999999999
Q ss_pred HHhcCCCCcEEEEEeccCCCCcc
Q 023288 255 AKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
|...|+|||.+++.|++.+....
T Consensus 261 C~~sL~~~GkIiv~E~V~p~e~~ 283 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPEEDK 283 (342)
T ss_pred HHHhCCCCCEEEEEeccCCCCCC
Confidence 99999999999999997765433
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=8.7e-15 Score=112.69 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=81.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+++.+++++...+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 34567999999999999999987654 3799999999999999988765432 3577888887652 22235899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++....+ ....+++++.+.|+|||.|++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999977543 3458999999999999999885
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=2.5e-15 Score=126.25 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=85.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCC--CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD 232 (284)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.|+++....+. .++.++++|+ ..++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 5678999999999999988876543 799999999999999998765432 4688999998 6655 5667999
Q ss_pred EEEecchhccCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++++...+.. ......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 999876543221 1124579999999999999999974
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.60 E-value=7.9e-15 Score=124.77 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|++++...+. ..++.+.+.|+.+++ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence 4578999999999999998886644 699999999999999998865332 236889999998765 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..+++|++.+++..+++++.+++++++.+.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999999998778889999999999988777664
No 60
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.59 E-value=1.4e-14 Score=129.09 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=80.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+... ....+++|.+.|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence 467999999999999999987655 69999999999999999876431100 0023578888888654 378999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
..+++|++++....+++.+.++ .+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999999877777788888764 5555544
No 61
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.58 E-value=2.4e-14 Score=122.48 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+. ..++++..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 4567999999999999999987765 499999999999999998765432 2367888888543 347899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+..+++|++++++..+++++.+.+++++.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988888999999998765555443
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.58 E-value=2.7e-14 Score=117.76 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+ .++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc--CCcccEEEE
Confidence 457899999999999998887766 79999999999999999876532 34778888886643 358999999
Q ss_pred cchhccCChh-------------------hHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~-------------------~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+..+++.++. .+..+++++.++|||||.+++.+....
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 9888766531 146789999999999999999876544
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=1.8e-14 Score=117.86 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=91.6
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
...++...+.. .+..+|||+|||+|.++..++..+.. +|+++|+|+.+++.+++++...+. .++++
T Consensus 19 ~t~lL~~~l~~-------~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~ 85 (170)
T PF05175_consen 19 GTRLLLDNLPK-------HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------ENVEV 85 (170)
T ss_dssp HHHHHHHHHHH-------HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEE
T ss_pred HHHHHHHHHhh-------ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------ccccc
Confidence 34455555542 25678999999999999988877666 799999999999999999887654 22888
Q ss_pred EEcCCCCCCCCCCceeEEEecchhccCCh---hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 217 ~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~---~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..|+.+... +++||+|+++..++.-.+ .-...+++.+.+.|||||.+++.-+
T Consensus 86 ~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 86 VQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 9999876433 579999999988776653 2367899999999999999977644
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=3e-14 Score=120.00 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...+. ..++++..+|+.+.....++||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45678999999999999987776432 3799999999999999998876543 2357899999877554557999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++..++++++ .++.+.|+|||+|++.-
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 999999887766 35778999999998853
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.57 E-value=2e-14 Score=126.23 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+..+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++. .++.+.++|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 457899999999999998876543 25899999999999998764 347789999999998889999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++... + ..++++.|+|||||.|++...
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 1 346789999999999999753
No 66
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=115.03 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=86.7
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||+|||.|.+...|++.++. .++|+|+|++.++.|+..++..++ ...++|.+.|+.+-.+..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 9999999999999999999888 599999999999999998887765 2349999999998777778999998555
Q ss_pred hhccC------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 239 CIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 239 ~l~~~------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+ +...+..++..+.+.|+|||+|+|+-
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 44333 11224568899999999999999963
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.56 E-value=6.4e-14 Score=127.36 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=85.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
..+|||+|||+|.++..+++.++. +|+++|+|+.+++.|++++...+.. ...++++...|.... .++++||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~~-~~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSG-VEPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEcccccc-CCCCCEEEEEE
Confidence 469999999999999998877654 8999999999999999988654321 013578888887543 23458999999
Q ss_pred cchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+|.. ++.....+++.+.++|+|||.|++.-|
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 9887643 333456899999999999999999854
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=99.55 E-value=3.8e-14 Score=124.07 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=87.4
Q ss_pred CCceEEEeeccccHHHHHHHH-hCCC--cEEEEeCCHHHHHHHHHHcCC-CCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~-~~~~--~v~gvD~S~~~l~~ar~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
++.+|+|||||.|.++..++. ..+. +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 678999999998865444433 3333 699999999999999999853 444 4679999999988643346899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++. +++++..++...+++++.+.|+|||.+++.
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997678889999999999999999996
No 69
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.55 E-value=5.6e-14 Score=125.10 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=87.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCC----
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~---- 229 (284)
++.+|||+|||+|..+..+++... .+|+++|+|+.||+.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 557899999999999999987753 479999999999999998865421 124577789998763 33221
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
...++++..+++++++++...++++++++|+|||.|+|.-+...+
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 344566667899999889999999999999999999986554443
No 70
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=3.3e-14 Score=118.62 Aligned_cols=145 Identities=20% Similarity=0.326 Sum_probs=109.7
Q ss_pred HHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC---cE
Q 023288 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (284)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v 183 (284)
..+..||+....... ..+.-.+.++...+..++... .....+|||||||.|.....+++.... .|
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 456789986543332 233445677777777766531 222338999999999999999976554 79
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeEEEecchhccCChhhHHHHHHHHHhcC
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 259 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~L 259 (284)
.++|.||..++..+++.... ..++...+.|++.- +++.+++|.|++.++|..++++....+++++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999999999887653 23444445555432 35678999999999999999999999999999999
Q ss_pred CCCcEEEEEec
Q 023288 260 KPGGFFVLKEN 270 (284)
Q Consensus 260 kpGG~lii~e~ 270 (284)
||||.+++.|-
T Consensus 174 KPGG~llfrDY 184 (264)
T KOG2361|consen 174 KPGGSLLFRDY 184 (264)
T ss_pred CCCcEEEEeec
Confidence 99999999764
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=2.1e-14 Score=119.92 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (284)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|+++....++ .+++++++|+.+++ ++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 4568999999999999999987654 799999999999999988766443 47899999997653 4456899
Q ss_pred EEEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++++...+.... ....++++++++|||||.|++.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99988765443211 0147999999999999999886
No 72
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=119.81 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCc-eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHL-VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~-~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
...+..++..+.. ..++. .++|+|||+|..++ .++.++.+|+|+|+|+.||+.|++.....-. ...
T Consensus 17 P~YPtdw~~~ia~-------~~~~h~~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~ 83 (261)
T KOG3010|consen 17 PSYPTDWFKKIAS-------RTEGHRLAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTP 83 (261)
T ss_pred CCCcHHHHHHHHh-------hCCCcceEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccc-----cCC
Confidence 3444566665543 22333 79999999996555 5557788999999999999999987654211 122
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+...++.++.-.+++.|+|++..++|++. +..+++++.|+||+.|-++..-+
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEEEE
Confidence 3344445555554578999999999999985 55899999999999885555444
No 73
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.54 E-value=1e-13 Score=119.02 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=87.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+ ..+++...++.+++ ...++||+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCccE
Confidence 34678999999999999998886654 59999999999999998865432 24677777777664 23478999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++..+++|.+ +...+++++.+.|+|||.+++...
T Consensus 118 Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 118 VTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 99999999998 556899999999999999998754
No 74
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=8.6e-14 Score=120.89 Aligned_cols=217 Identities=20% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhhhhHHHHhhhhcccccCCCCCCccccccccCCCCCCcccCHHHHHHHHhcCCccc--hhhhhHHH-HH---
Q 023288 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWY-RE--- 108 (284)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~--- 108 (284)
..-.-|+-|+|-++..+.+.+.+...- +....+.+.|...+| ..+..++..+.....-.. -+....+| ..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455668889999999999988776632 234557777888888 778888887775431111 01111111 10
Q ss_pred ---HhhchhcccccccccccCCCcccc-ccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cE
Q 023288 109 ---GISYWEGVEASVDGVLGGFGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (284)
Q Consensus 109 ---~~~yW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (284)
...+|.....-.+..+-...+++. ..+....++|...+. ...+.+|||+|||.|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 112333221112222222222332 234444455554443 334559999999999999999987764 89
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhh---HHHHHHHHHhcCC
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD---FVSFFKRAKVGLK 260 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~---~~~~l~~~~r~Lk 260 (284)
+.+|+|...++.+|+++..++. .+..++..|+.+- .+ ++||+|+|+-.||-=..-. ..+++..+.+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEeccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999987653 2224555555442 23 3999999999998543211 3479999999999
Q ss_pred CCcEEEEEec
Q 023288 261 PGGFFVLKEN 270 (284)
Q Consensus 261 pGG~lii~e~ 270 (284)
+||.|.|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999877
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=8.2e-14 Score=115.65 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=81.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.+++++...+. .+++++++|... .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 446789999999999999988876543 799999999999999998765432 357888888742 23 358999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++....++ +..+++.+.+.|+|||.+++..
T Consensus 101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 999876443 4478999999999999998865
No 76
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=116.86 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|..+..+++... .+|+++|+++.+++.+++++...+. .++++.++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 56788999999999999987775532 3799999999999999999876543 468999999877655567999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++.....+++ ..+.+.|||||+|++..
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999987765543 34667899999998864
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=2e-13 Score=115.84 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|.++..++..... +|+++|+++.+++.|++++...++ .+++++++|..+.....++||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 567889999999999999987765432 599999999999999999876543 468899999877544456899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887765544 3467889999999886
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=9.4e-14 Score=122.92 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=80.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++....++ ...+.+...+... ..+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccccc--ccCCCceEEEE
Confidence 5689999999999999988766666899999999999999999876543 2335555555322 23468999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...+ .+..++.++.++|||||.++++..
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76533 456899999999999999999864
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.51 E-value=3.5e-13 Score=114.15 Aligned_cols=127 Identities=13% Similarity=-0.027 Sum_probs=97.8
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC------CCCCCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~------~~~~~~~~ 211 (284)
...+|...+.... ..++.+||+.|||.|..+.+|++.++. |+|+|+|+..++.+.+..... +.......
T Consensus 28 pnp~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence 3445545554332 235679999999999999999988887 999999999999987643110 00001113
Q ss_pred cceeEEEcCCCCCCCC---CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 212 KATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~---~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+++++++|+.+++.. .+.||+|+-..+|++++++...++.+.+.++|+|||.+++.-
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4689999999998642 268999999999999999999999999999999999888763
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.50 E-value=3.9e-14 Score=108.26 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=85.9
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv 235 (284)
+.+|||+|||+|.++..+++.+..+++|+|+++..++.++.++...+. ..+++++++|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999999988745899999999999999999876544 356899999988765 6678999999
Q ss_pred ecchhccCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+.... ......+++++.++|||||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998766431 1135689999999999999998863
No 81
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.50 E-value=1.2e-13 Score=119.90 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=84.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-.+.+|||||||.|+.+..++.+++..|+|+|+++...-..+......+. ...+.+....+++++. .+.||+|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lplgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELPLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcCcchhhccc-cCCcCEEE
Confidence 36789999999999999999999999999999999877664432221111 1223333357777776 57999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|.+||.|.. +....|+++...|+|||.+++-..+
T Consensus 188 ~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 188 SMGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred EeeehhccC--CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999999998 6669999999999999999985443
No 82
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.50 E-value=5.7e-15 Score=122.09 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=85.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
.+-.++||+|||||..+..+. ....+++|||+|.+|+++|.++--. -.+.++++..+. ..+.+||+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred CccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----------HHHHHHHHHHHhhhccCCcccc
Confidence 346799999999999999765 4455799999999999999987543 223444444332 34578999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE-eccCCCC-ccc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARSG-TFL 278 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~-e~~~~~~-~~~ 278 (284)
|++..|+.++. ++..++.-+...|+|||.|.|+ |....++ |++
T Consensus 192 i~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 192 IVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred hhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 99999999999 8889999999999999999998 5544443 443
No 83
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.50 E-value=1.7e-13 Score=116.69 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+. .++++...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998876655 599999999999999998765321 1578888888777544 37899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|+. +...+++++.++|+|||.+++...
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999998 566999999999999999998764
No 84
>PRK14967 putative methyltransferase; Provisional
Probab=99.49 E-value=3.3e-13 Score=115.19 Aligned_cols=108 Identities=15% Similarity=0.045 Sum_probs=82.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++...+ .++.+++.|+.+. .++++||+|
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhh-ccCCCeeEE
Confidence 34567999999999999998886655579999999999999999876532 2467888888664 345689999
Q ss_pred EecchhccCCh-------------------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~-------------------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++..+...+. ..+..+++++.++|||||.+++...
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99854332211 1245788999999999999998643
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=2.3e-13 Score=118.15 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=74.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+. ...+.+..+ +.+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence 46789999999999999977765655799999999999999999876443 112222222 12799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++... +.+..++.++.++|||||.++++...
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 87542 24567899999999999999998653
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=7.9e-13 Score=110.75 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=81.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++++|..+.. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5678899999999999999887643 2 3799999999999999998766442 246788888887642 223689
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|.|++... ..++..+++.+.++|||||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 22566899999999999999987
No 87
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=8.6e-13 Score=112.44 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (284)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.+.+++.. ..++.++.+|+... ++. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56788999999999999998886542 3799999999999988777654 24678888888652 122 5
Q ss_pred ceeEEEecchhccCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|++.. +++ ....+++++.++|||||.++++
T Consensus 141 ~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 699998542 222 2345789999999999999993
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=4.8e-13 Score=113.97 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=90.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
.....+|||+|||+|.++..++++.. .++++||+.+.|.+.|+++.+.+++ ..++++++.|+.++. ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhccccccc
Confidence 34478999999999999998887744 4899999999999999999988665 578999999999875 334579
Q ss_pred eEEEecchhccCCh----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~----------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|+|+-.+.-... -+++++++.+.++|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99999865443322 24789999999999999999986
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.44 E-value=1.7e-12 Score=114.66 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=80.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+. .++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~-~~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAA-LPGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhc-cCCCCccEEE
Confidence 4568999999999999998876543 799999999999999999876543 24688999998543 2345899999
Q ss_pred ecchh------ccC-------Ch----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCI------GHL-------TD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l------~~~-------~~----------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++... .++ +. +....+++++.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87321 111 10 12367899999999999998873
No 90
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=8.5e-13 Score=111.41 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=76.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (284)
.++.+|||||||+|.++..+++.... .|+++|+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 46779999999999999988877532 799999998 21 1 134789999998853
Q ss_pred CCCCceeEEEecchhccCChh--h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~--~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.+++||+|+++.+.++...+ + ...+++++.++|||||.|++...
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 456789999998776665422 1 24689999999999999999754
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=1.4e-12 Score=110.39 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|..+..++... .+++++|+++.+++.+++++...++ .++++..+|..+...+.++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 5677899999999999998666554 4799999999999999999876543 35888999876543334789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++...+++++ +.+.+.|+|||.+++.-.
T Consensus 149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 9988766543 456789999999998643
No 92
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.43 E-value=9.1e-13 Score=119.48 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (284)
..+..+||||||+|.++..++...+. .++|+|+++.|++.+.+++...++ .++.++++|+..+ .++++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCcee
Confidence 45568999999999999999988754 799999999999999998876553 5788999998764 35678999
Q ss_pred EEEecchhccCChhh----HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD----FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~----~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++++...|..... ...++++++|+|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 999876544322111 257999999999999999995
No 93
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.43 E-value=5.8e-13 Score=109.67 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=81.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~Iv 235 (284)
.+.-|||||||+|..+..+...+. .++|+|+|+.|++.|.++-- ..+++.+|+-. +|+.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence 577899999999999997776664 59999999999999987421 24577788754 688899999999
Q ss_pred ecchhccC---------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHL---------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~---------~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+...++++ |...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 87666544 3344778999999999999999885
No 94
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.43 E-value=5.2e-13 Score=108.09 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=72.5
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCc
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG 263 (284)
+|+|+|++|++.|+++....+. ....+++++++|+.++++++++||+|++..++++++ +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 5899999999999877542110 002468999999999999888999999999999998 66799999999999999
Q ss_pred EEEEEeccCCCC
Q 023288 264 FFVLKENIARSG 275 (284)
Q Consensus 264 ~lii~e~~~~~~ 275 (284)
.+++.|...++.
T Consensus 76 ~l~i~d~~~~~~ 87 (160)
T PLN02232 76 RVSILDFNKSNQ 87 (160)
T ss_pred EEEEEECCCCCh
Confidence 999999765543
No 95
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.43 E-value=1.1e-12 Score=112.67 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++ ..+++++.+|+.+.- .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCC
Confidence 34567999999999999888876533 2899999999999999999988765 356899999887641 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
+.++||+|++... .+....++..+.+.|+|||.+++ ||+.-.|.+.+++
T Consensus 141 ~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l~~G~v~~~~ 189 (234)
T PLN02781 141 PKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTLWFGFVAQEE 189 (234)
T ss_pred CCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCCcCCeecCcc
Confidence 2368999987543 23566889999999999997555 8887778777654
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.43 E-value=2e-12 Score=94.97 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=82.8
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv~~~ 238 (284)
+|+|+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|+.+... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999998886344589999999999999985332211 3568888898888764 457899999999
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++++ .+....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99884 346779999999999999999886
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=2.9e-12 Score=114.20 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=79.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999998876543 799999999999999999876543 245889999986532 34589999987
Q ss_pred chh-------------ccCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023288 238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 238 ~~l-------------~~~~~----------~~~~~~l~~~~r~LkpGG~lii 267 (284)
... +|-+. +....+++++.+.|+|||.+++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 321 11111 1246789999999999999988
No 98
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.41 E-value=1.1e-12 Score=109.61 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=73.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~I 234 (284)
++.+|||+|||+|.++..++......++|+|+|+.|++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 5679999999999999988765544689999999999998652 25677788765 3 2556799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+++.++||++ +...+++++.+.+++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 9999999998 566899999887765
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.41 E-value=3.9e-12 Score=110.15 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=81.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..... +++|+|+|+.+++.++++....++ .+++++++|+.+ .+++++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhc-cCcCCceeEEE
Confidence 4568999999999999999876443 799999999999999998876443 358899999876 34457899999
Q ss_pred ecchhcc------CChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGH------LTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~------~~~~------------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..+.. +... ....+++++.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8654332 1111 1347889999999999999985
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.41 E-value=4.1e-12 Score=112.31 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=80.5
Q ss_pred ceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+. .+..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~-~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP-LAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc-CcCCCccEEEEC
Confidence 6899999999999999887654 3799999999999999999876543 23588999998663 333489999987
Q ss_pred c-------------hhccCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 238 ~-------------~l~~~~~----------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ++.|-|. .....+++++.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 2222221 13567899999999999998873
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.40 E-value=4.6e-12 Score=105.93 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...+. .+++++.+|+.+. ......+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45778999999999999998875533 3799999999999999998865432 3578888887542 21113457
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+.... .++..+++++.++|+|||.+++...
T Consensus 112 ~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7655321 2456899999999999999998754
No 102
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.39 E-value=2.4e-12 Score=111.05 Aligned_cols=105 Identities=21% Similarity=0.335 Sum_probs=88.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|+|||+|+|.++..+++.++. +++.+|. |.+++.+++ . .+++++.+|+. -+++. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhcc--ccc
Confidence 345568999999999999999988887 8999998 889999988 1 46999999998 44443 999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCC--cEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG--G~lii~e~~~~~~ 275 (284)
|++.+++|+.++++...+|+++++.|+|| |+|+|.|.+.++.
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 99999999999999999999999999999 9999999875543
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=3.9e-12 Score=114.77 Aligned_cols=108 Identities=14% Similarity=-0.021 Sum_probs=86.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++...+..+ ..++|+|+++.|++.+++++...+. .++++.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 4567899999999999998766544 4699999999999999999876554 23778899999988777899999
Q ss_pred EecchhccC-------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~-------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++..+... ..+-...+++++.++|||||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 997443211 11225789999999999999998864
No 104
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.38 E-value=1.7e-12 Score=109.97 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC-CCCC-----CCCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHM-----APDM 210 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~-~~~~-----~~~~ 210 (284)
.....|..++.. +. ..++.+||..|||.|.....|+++++. |+|+|+|+..++.+.+.... .... ....
T Consensus 21 ~~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 21 EPNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp TSTHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 334455555554 22 456779999999999999999988875 99999999999998544322 0000 0011
Q ss_pred CcceeEEEcCCCCCCCCC-CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 211 HKATNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~-~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..+++++++|+-+++... ++||+|+-..+|+.++++...++.+.+.++|+|||.+++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 346899999999876543 589999999999999999999999999999999999433
No 105
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=6.5e-12 Score=109.70 Aligned_cols=104 Identities=14% Similarity=-0.032 Sum_probs=77.1
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CCCC
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET 228 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 228 (284)
...++.+|||+|||+|.++..++.... ..|+++|+|+.|++...+.+.. ..|+.++..|+... ....
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhccc
Confidence 367888999999999999999887643 2799999999876555554433 24678888887642 2223
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+||+|++.... + ++...++.++.++|||||.|+|..
T Consensus 201 ~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 201 PMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEEE
Confidence 589999987742 2 244467778999999999999953
No 106
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.37 E-value=1e-11 Score=100.83 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
.-+.-+....|. +.++.+++|||||||..+..++..++. +|+++|-++++++..+++....+. .|+.++.
T Consensus 20 ~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~ 90 (187)
T COG2242 20 EEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVE 90 (187)
T ss_pred HHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEe
Confidence 334434434444 788999999999999999999854544 899999999999999999887653 6889999
Q ss_pred cCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++.+.-....+||.||.... . .+..+++.+...|||||++++.
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 998775433237999999888 3 4458999999999999999985
No 107
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=3.6e-12 Score=104.06 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=78.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||+|||.|.+...|......+..|+|+++..+..+.++- +.++++|+.+- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG-------------v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG-------------VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC-------------CCEEECCHHHhHhhCCCCCccE
Confidence 478999999999999999888755557999999999998887652 56888988764 378899999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
||++.+++++.. ...+++++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~~--P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVRR--PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHhH--HHHHHHHHHHh---cCeEEEE
Confidence 999999999984 44899999877 4455554
No 108
>PRK14968 putative methyltransferase; Provisional
Probab=99.36 E-value=8e-12 Score=103.30 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=82.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+.. ..++.+...|+.+. +.+.+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~-~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEP-FRGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccc-ccccCceEEE
Confidence 45678999999999999998877 457999999999999999887654431 11267788887663 3345899999
Q ss_pred ecchhccCC-------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~-------------------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+...+ ...+..+++++.++|||||.+++...
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 876543211 12256789999999999999888643
No 109
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.8e-12 Score=110.61 Aligned_cols=104 Identities=24% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.+++..+.-+..+++|+|+.|-.++.|++++..++... .+.....+.... ...++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~~~~-~~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLLLEV-PENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccchhh-cccCcccEEE
Confidence 3788999999999999998888888899999999999999999998765421 111222222222 2236999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++=. - +-+..+...+.+.|||||+++++-.
T Consensus 235 ANIL-A----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 235 ANIL-A----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ehhh-H----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 8763 2 2466899999999999999999843
No 110
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.36 E-value=5.2e-12 Score=113.28 Aligned_cols=133 Identities=18% Similarity=0.303 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHhhcCC--ccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC----CCCCCCC
Q 023288 136 KGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----ENHMAPD 209 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~--~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~----~~~~~~~ 209 (284)
.....++...+...... ....++.+|||+|||-|.....+.......++|+|+|...|+.|+++... ..-....
T Consensus 39 R~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 33444555555433321 01126789999999988887778878888999999999999999999821 0000011
Q ss_pred CCcceeEEEcCCCCC------CCCCCceeEEEecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 210 MHKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 210 ~~~~~~~~~~d~~~~------~~~~~~fD~Iv~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
......|+.+|.... +.....||+|-|.+++||. +.+....+|+++.+.|+|||+|+.+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 123466788877542 2223599999999999987 4455778999999999999999987
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=3.7e-12 Score=112.21 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++...+..+..+|+++|++|..++.|++++..++.. .++.+ ....+ ...++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----~~~~v--~~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----DRIEV--SLSED--LVEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----TCEEE--SCTSC--TCCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----eeEEE--EEecc--cccccCCEEE
Confidence 366799999999999999888778879999999999999999999877652 23322 22222 2237999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++-... -+..++..+.++|+|||+++++-
T Consensus 231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 231 ANILAD-----VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EES-HH-----HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred ECCCHH-----HHHHHHHHHHHhhCCCCEEEEcc
Confidence 886633 56688899999999999999974
No 112
>PRK00811 spermidine synthase; Provisional
Probab=99.35 E-value=4.5e-12 Score=111.85 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.++.+||+||||+|..+..+++. ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999998865 3458999999999999999987532110 001357889999987643 23568999
Q ss_pred EEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++...-.+.+... ...+++.+.+.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433333222 257899999999999998874
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=2.3e-11 Score=106.84 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=80.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++.. .. ..++.++.+|+.+.. .+++||+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~-~~~~fD~ 178 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPL-PGGRFDL 178 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcC-CCCceeE
Confidence 34667999999999999999887653 3799999999999999999761 11 346889999885532 2468999
Q ss_pred EEecchhcc------CC------------------hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~------~~------------------~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+++....- +. -+....+++++.++|+|||.+++.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 998643211 11 012467888999999999999984
No 114
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=1.4e-11 Score=112.55 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++...+ .+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcchhccccccCCCccEE
Confidence 4568999999999999988865443 79999999999999999986542 368899999865432 23589999
Q ss_pred EecchhccCCh-----------------------hhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTD-----------------------DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~-----------------------~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++.......+ +-...+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99764311100 0145777888899999999876
No 115
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.5e-11 Score=101.92 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|+.+.-++ +...+|+.+|..+...+.|++++...|+ .|+.+.++|...--.+.++||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999555 5555799999999999999999988775 46899999987754555799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.......+| +.+.+.|||||++++-..
T Consensus 143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 9999888777 235667999999999755
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=110.58 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=79.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++++|..+...+.++||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456789999999999999988865432 599999999999999998876543 457888898876655556899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++...+.+++ ..+.+.|+|||.+++..
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 999986655443 34567899999998854
No 117
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=106.88 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.++++.. +++++++|+.++.. ..+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~-~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFES-NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhcc-cCCCcEEE
Confidence 45689999999999999887654 3479999999999999998742 47789999988754 36899999
Q ss_pred ecchhccCChhh------------------HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~------------------~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..+++.+..+ +..+++....+|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 999988875442 245677788999999977775
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1.3e-11 Score=107.76 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.++.+|||||||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++. ..+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence 35678999999999999988876544 799999999999999999764321 357889999986542 22358999
Q ss_pred EEecchh-ccCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCI-GHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l-~~~~~~-~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++...- ...+.. ....+++++.++|+|||++++.
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9975311 111110 1358999999999999999984
No 119
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.31 E-value=1e-11 Score=103.39 Aligned_cols=118 Identities=22% Similarity=0.334 Sum_probs=74.8
Q ss_pred CCCCceEEEeeccccHH----HHHHHH---hCCC---cEEEEeCCHHHHHHHHHHc-------------------C--CC
Q 023288 155 NNQHLVALDCGSGIGRI----TKNLLI---RYFN---EVDLLEPVSHFLDAARESL-------------------A--PE 203 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~----s~~l~~---~~~~---~v~gvD~S~~~l~~ar~~~-------------------~--~~ 203 (284)
..+..+|+..||+||.- +..+.+ .... ++.|+|+|+.+|+.|++-. . ..
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 34678999999999953 332222 1122 7999999999999998721 0 00
Q ss_pred CCC-CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE--eccC
Q 023288 204 NHM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (284)
Q Consensus 204 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (284)
+.. ......++.|...|+.+.+...+.||+|+|.+|+.|+..+....+++.+++.|+|||+|++. |...
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 111 22223578999999988444557999999999999999998999999999999999999997 5544
No 120
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=1.9e-11 Score=99.75 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=78.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++++ ..+++++|+++.|++.+++++.. ..+++++.+|+.++++++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 456679999999999999999977 45799999999999999998754 246889999999988776679999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++..++ +..+.+..++++. .+.++|.+++.
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9987654 3333344444322 24577877774
No 121
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.29 E-value=3.9e-12 Score=104.82 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred HhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
+.+.+.+-+..|+.+..||..........+-+.+...+.. .++...|.|+|||.+.++..+- ... +|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 4455555666677666777665445555555555555542 3456799999999999987542 333 4999997
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 189 S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+ .+-.+..+|+.+.|++++++|++|++.+|+.. ++..++.++.|+|||||.|.|+
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 42 22346789999999999999999999988764 5668999999999999999999
Q ss_pred eccC
Q 023288 269 ENIA 272 (284)
Q Consensus 269 e~~~ 272 (284)
|..+
T Consensus 158 EV~S 161 (219)
T PF05148_consen 158 EVKS 161 (219)
T ss_dssp EEGG
T ss_pred Eecc
Confidence 9754
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=1.1e-11 Score=102.99 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=71.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ . ..++++++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457889999999999999988776533 69999999854 1 134678888887642
Q ss_pred -CCCCceeEEEecchhc--------cCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 -PETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~--------~~~-~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+.++||+|++..+.+ |.. .+....+++++.++|+|||.+++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3456899999865422 111 112468999999999999999985
No 123
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=2.5e-11 Score=101.98 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=98.2
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
.....++..++. ...+.+|||||.++|..+.+++.... . +++.+|+++++.+.|+++++..|+ ...
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 444556665554 44678999999999999999987655 2 799999999999999999998876 345
Q ss_pred eeEEE-cCCCCCC--CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 214 TNFFC-VPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 214 ~~~~~-~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
+..+. +|..+.- ...++||+||.-.. ..+...++..+.++|+|||.+++ ||+...|.+.++
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~-DNvl~~G~v~~~ 176 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVA-DNVLFGGRVADP 176 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEE-eecccCCccCCc
Confidence 67777 4554431 34589999997554 34567899999999999996655 999888877665
No 124
>PLN02476 O-methyltransferase
Probab=99.28 E-value=3.3e-11 Score=105.09 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=92.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C----
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P---- 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---- 226 (284)
..++.+|||||||+|..+..++..... .|+.+|.++++.+.|+++++..|+ ..+++++.+|+.+.- +
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcc
Confidence 345689999999999999988864322 699999999999999999988776 457899999876531 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
..++||+|+.-.. ..+...++..+.++|+|||.+++ ||+.-.|.+.|+.
T Consensus 191 ~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~~ 239 (278)
T PLN02476 191 EGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADPL 239 (278)
T ss_pred cCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCcc
Confidence 1368999997654 34677899999999999998665 8888888877653
No 125
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.27 E-value=4.8e-11 Score=98.80 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~ 217 (284)
...+...+.+.+. ..+.+|||||||||..+.+++...+. ...-.|+.+..+.-.+......++.+.... +
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P-----~ 81 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP-----L 81 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC-----e
Confidence 3445555555544 12226999999999999999987766 677889999888777776666555433332 2
Q ss_pred EcCCCCC--CC------CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcc
Q 023288 218 CVPLQDF--TP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 218 ~~d~~~~--~~------~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
..|+..- +. ..++||.|++.+++|-++++....+|+.+.++|+|||.|++.-....+|.+
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 3444433 21 246899999999999999999999999999999999999998776666644
No 126
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.27 E-value=2.7e-11 Score=114.98 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+. .+.++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~-~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFEN-IEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhh-CcCCCccEEE
Confidence 3468999999999999988876443 799999999999999999866543 24678888887542 2346899999
Q ss_pred ecchhc--------------cCC------h----hhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIG--------------HLT------D----DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~--------------~~~------~----~~~~~~l~~~~r~LkpGG~lii 267 (284)
++.... |-| . +.+..+++.+.++|+|||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 864211 111 0 1245678889999999999987
No 127
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.27 E-value=1.6e-11 Score=103.04 Aligned_cols=113 Identities=17% Similarity=0.265 Sum_probs=90.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (284)
++.+||||||++|..+..++...+. +|+.+|+++...+.|++.+...|+ ..+++++.+|..+.- .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999875443 899999999999999999987765 467999999886531 113
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
++||+|+.-.. ..+...++..+.++|+|||.+++ ||+.-.|.+.++
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~l~~G~V~~~ 165 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNVLWRGSVADP 165 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETTTGGGGGGST
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-ccccccceecCc
Confidence 58999997664 34677889999999999997665 888888877765
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.26 E-value=5.2e-11 Score=103.32 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=76.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~I 234 (284)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+ .+++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999988866433 79999999999999999986532 4678888765321 12579999
Q ss_pred Eecchhc------cCChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIG------HLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~------~~~~~------------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++.... .++++ -+..+++.+.++|+|||.+++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9885432 11111 1357888888999999999985
No 129
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=5.3e-11 Score=111.24 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (284)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...|+ .++++++.|+.+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 56778999999999999998887643 2799999999999999999887654 35889999988765 335
Q ss_pred CceeEEEec------chhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~------~~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
++||.|++. +++++-++ ++ ...++.++.++|||||.|+.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999963 34444332 11 3578999999999999998764
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.25 E-value=2.2e-11 Score=105.69 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=96.8
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcce
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~ 214 (284)
+.....|+...+..... .+...++|+|||-|.-...+-..+...++|+||+...++.|+++.....-....+...+
T Consensus 99 lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 34455666666654433 46678999999999998888888888999999999999999998764211111112346
Q ss_pred eEEEcCCCCC------CCCCCceeEEEecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 215 NFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 215 ~~~~~d~~~~------~~~~~~fD~Iv~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+++|...- ++.+.+||+|-|.+++|+. +.+....+++++.+.|+|||+|+-+
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 7888876532 2344459999999999976 4455778999999999999999876
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.24 E-value=1.8e-11 Score=102.94 Aligned_cols=102 Identities=22% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+++.+|||||||+|+.+.-++.-... .|+++|..+...+.|++++...+. .++.+.++|...-..+.++||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 678999999999999999966654332 599999999999999999876543 478999999766444457899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|++......+| ..+.+.|++||++++.-.
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999998876555 236667999999999643
No 132
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.24 E-value=8.2e-11 Score=109.74 Aligned_cols=111 Identities=20% Similarity=0.094 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~f 231 (284)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.++++++..|. ...+.+..+|....+. +.++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 56778999999999999998887543 3799999999999999999887654 1234446666654433 45689
Q ss_pred eEEEec------chhccCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~------~~l~~~~~~-------~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|++. +++++.++- + ...++.++.++|||||.++++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999952 345554421 1 35799999999999999999743
No 133
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.2e-10 Score=108.75 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=83.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ +++++++|+.+++ ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 56788999999999999999887765 3799999999999999999876543 3578889987754 234689
Q ss_pred eEEEecch------hcc-------CChhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWC------IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~------l~~-------~~~~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|++... +.+ ...++ ...++.++.++|||||.++++..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99995331 111 11111 24789999999999999998753
No 134
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.23 E-value=2.7e-11 Score=102.08 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=95.3
Q ss_pred HhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
+.+.+..-+..|+.+..||..........+.+.+...+.. ......|.|+|||.+.++. .....|..+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3455555555666666666543334444455555555543 2456789999999998765 33446999997
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 189 S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
- ..+-+++.+|+.+.|.++++.|++|++.+|+.. ++..+++++.|+|+|||.++|+
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEE
Confidence 4 234567889999999999999999998887752 6778999999999999999999
Q ss_pred eccC
Q 023288 269 ENIA 272 (284)
Q Consensus 269 e~~~ 272 (284)
|.-+
T Consensus 264 Ev~S 267 (325)
T KOG3045|consen 264 EVKS 267 (325)
T ss_pred ehhh
Confidence 9743
No 135
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.3e-10 Score=108.88 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...|+ .++++.+.|+.++. ++++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc-cCCCCC
Confidence 4567899999999999998777643 23799999999999999999877553 35889999998765 346899
Q ss_pred EEEec----c--hhc-------cCChhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQ----W--CIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~----~--~l~-------~~~~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++. . ++. +.+.++ ...++.++.+.|||||+++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99952 1 111 112222 2368999999999999999975
No 136
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=9.4e-11 Score=99.24 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=74.2
Q ss_pred CceEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. ++.++..|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5799999999999999887642 2279999999999999998753 36788899877654 468999
Q ss_pred EEecchhccCChhh----------HHHHHHHHHhcCCCCcEEEE
Q 023288 234 IWVQWCIGHLTDDD----------FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 234 Iv~~~~l~~~~~~~----------~~~~l~~~~r~LkpGG~lii 267 (284)
||++-.+.-....+ ...++..+.++++||+. ++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 99997766332111 44588888986666664 44
No 137
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=9e-11 Score=102.65 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+. .++.+.+.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 56778999999999999998877543 2799999999999999999877653 357888888877654445799
Q ss_pred EEEecc------hhccC-------Chhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQW------CIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~------~l~~~-------~~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
.|++.- ++.+- ..++ ...+++++.+.|||||+++.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999532 22211 1111 2469999999999999998874
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.19 E-value=7.9e-11 Score=103.35 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I 234 (284)
.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+. .....+++++..|..++. ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888665 44899999999999999998754211 011245777777765431 123689999
Q ss_pred EecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
++.......+... ...+++.+.+.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222222 357899999999999999986
No 139
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=1.4e-10 Score=99.84 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----- 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~----- 226 (284)
.++.+|||||+++|..+.+++..... +|+.+|.++...+.|++.+...|+ ..+++++.++..+.- .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHHHHHHHHhccc
Confidence 35679999999999999988865432 799999999999999999988776 467899999876631 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
..++||+|+.-.- ......++..+.++|+|||.|++ ||+.-.|.+.|+
T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G~v~~~ 200 (247)
T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNGSVVAP 200 (247)
T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCCcccCc
Confidence 1268999997654 33566888999999999998555 888877877765
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=1.9e-10 Score=107.23 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
+.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...|+ .++++.+.|...++ ..+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 5677899999999999999888754 23799999999999999999887654 35788999988765 335689
Q ss_pred eEEEecc------hhccCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~------~l~~~~-------~~-------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|.|++.. ++..-+ .+ ....++.++.+.|||||.++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999632 222111 11 12567999999999999988864
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=99.19 E-value=2.3e-10 Score=102.67 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
..+.+||+||||+|..+..+++.. ..+|++||+++.|++.|++...-..+.. ....++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888643 2489999999999999997321100000 011467899999987753 3346899
Q ss_pred EEEecchhc---cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~---~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++...-. ....-.-..+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999874311 11111125799999999999999988743
No 142
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=2.6e-11 Score=100.53 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=89.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
....++|||||-|.+.+.+...+..+++-+|.|..|++.++..-.. .....+...|-+.+++.+++||+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999988988999999999999999865322 34567788898889999999999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..+|+.. ++...+.+|...|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999998 8889999999999999988764
No 143
>PLN02366 spermidine synthase
Probab=99.18 E-value=2.5e-10 Score=101.48 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (284)
.++.+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+...+. ....++++++.+|...+. .++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999888542 23799999999999999998764221 111457899999975442 2246899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++...-.+.+... -..+++.+.++|+|||.+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999865433322211 347899999999999999763
No 144
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.9e-10 Score=101.24 Aligned_cols=101 Identities=25% Similarity=0.230 Sum_probs=76.0
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||+|||+|.++..++..... +|+|+|+|+..++.|++++...++ .++.++..|+.+- -.++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~--~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEP--LRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeecccc--cCCceeEEEeCC
Confidence 7999999999999999877765 899999999999999999988654 2344555555432 234899999885
Q ss_pred hhcc-----CCh------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGH-----LTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~-----~~~------------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..-- ..+ +-...++.++.+.|+|||.+++-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 3111 100 12567888899999999988874
No 145
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.17 E-value=9.1e-11 Score=107.89 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 56799999999999998777666668999999999999999999876541 136889999987652 1245899
Q ss_pred EEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++....-.-+. ..+..++..+.++|+|||.|+..-
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998855311111 135566778899999999988754
No 146
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.17 E-value=2.1e-10 Score=97.72 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=76.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
...++||||+|.|..+..++ ..+.+|+++|.|+.|....+++- |.+.+..++.-.+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG---------------FTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC---------------CeEEehhhhhccCCceEEEee
Confidence 56789999999999999886 77888999999999988777642 122333334334468999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.++|.... +...+++.+++.|+|+|.++++=
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999887 55599999999999999999964
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3e-10 Score=106.59 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (284)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++ .+++++++|+.++. ++ ++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhc-cc
Confidence 4567899999999999999888764 23799999999999999999877654 34889999988763 23 68
Q ss_pred eeEEEecch------hccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWC------IGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~------l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
||+|++... +.+-+ ..+ ...+++++.++|||||.++.+.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999997532 11111 111 2468999999999999999753
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=6.2e-11 Score=116.78 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=84.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 46799999999999999988776667999999999999999999876541 136899999976542 1136899999
Q ss_pred ecchhc-cC--------ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIG-HL--------TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~-~~--------~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..... .- ...+...++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 864311 00 012466789999999999999887543
No 149
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.15 E-value=1.9e-10 Score=101.09 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCceEEEeeccccHH----HHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCC-----------------------CC
Q 023288 157 QHLVALDCGSGIGRI----TKNLLIRY-----FNEVDLLEPVSHFLDAARESLAP-----------------------EN 204 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~----s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~-----------------------~~ 204 (284)
...+|+..||.||.- +..+.+.. .-+|+|+|+|+.+|+.|++-.-. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999953 33222221 11699999999999999874211 00
Q ss_pred C--CCCCCCcceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 205 H--MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 205 ~--~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ........++|...|+.+.+++ .+.||+|+|.+++.|++++....+++++++.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 0122345788999999875432 57899999999999999888999999999999999999886
No 150
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.12 E-value=6.2e-10 Score=93.02 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.++++++..+. .+++++++|+.++. ....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4579999999999999977777777899999999999999999876543 35888999886532 2234799999
Q ss_pred ecchhccCChhhHHHHHHHHHh--cCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~e 269 (284)
++-.+.. . -...++..+.. +|+|+|.+++..
T Consensus 127 ~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 127 VDPPFRK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred ECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 9988532 1 23345555554 489999888753
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=6.5e-10 Score=93.09 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=76.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCC---C-----------------------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMA---P----------------------- 208 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~---~----------------------- 208 (284)
..+..+|||||..|.++..+++.... .|.|+||.+..|..|++++...--.. .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999876544 89999999999999999875310000 0
Q ss_pred ---CCC-------cceeEEEcCCCCCCCCCCceeEEEecchh--ccC--ChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 209 ---DMH-------KATNFFCVPLQDFTPETGRYDVIWVQWCI--GHL--TDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 209 ---~~~-------~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l--~~~--~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.+. .|..+...|+.+ .....||+|+|..+- -|+ .|+.+..+|+++.++|.|||+|++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 000 011111222322 234589999976543 244 455699999999999999999988
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=6.8e-10 Score=104.11 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (284)
..++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|++++...+. .+++++++|+.+.. +.+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 4566899999999999999888665 5799999999999999999876543 36899999986532 33467
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|++...-.. ....++.+.+ ++|++.++++-|
T Consensus 368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999998765332 2245555555 699999999854
No 153
>PRK03612 spermidine synthase; Provisional
Probab=99.09 E-value=4.2e-10 Score=107.37 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+++.+|||||||+|..+..+++... .+++++|+++++++.++++..-..... ....++++++..|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999998886543 589999999999999998432111100 001357889999987642 2346899
Q ss_pred EEEecchhccCChh---hHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~---~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++.......+.. --.++++.+.+.|||||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99997543322211 0236899999999999999885
No 154
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.08 E-value=3.3e-09 Score=84.08 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
..++.+.....+. +..+.-|||+|.|||.++..+++++.. .+++++.|+.+.....+.+.. +++
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i 98 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI 98 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence 3444444433333 677889999999999999999998776 899999999999999998765 456
Q ss_pred EEcCCCCCC-----CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 217 ~~~d~~~~~-----~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.+|..++. .....||.|+|.-.+-.++.....++++.+...|.+||.++-..
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 777776654 34467999999999999988788899999999999999888754
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.07 E-value=4.5e-10 Score=99.17 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-++..|||+|||||.++...++.|..+|++||.|. +.+.|++.+..+++ ...++++.+.+++..+|..+.|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEe
Confidence 35789999999999999988888888999999876 55999999888776 3568899998888766667999999
Q ss_pred ecchhccCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii 267 (284)
+-|.-..+--+ -+..++-.=-+.|+|||.++=
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 98865544322 355666666789999998753
No 156
>PLN02672 methionine S-methyltransferase
Probab=99.06 E-value=1.2e-09 Score=110.26 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=80.2
Q ss_pred CceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCC----------CCCCCcceeEEEcCCCCCCC
Q 023288 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~----------~~~~~~~~~~~~~d~~~~~~ 226 (284)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++. +.....+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999987765 37999999999999999998764331 00112468999999876542
Q ss_pred C-CCceeEEEecchhc--------------cCC------------------hhh----HHHHHHHHHhcCCCCcEEEE
Q 023288 227 E-TGRYDVIWVQWCIG--------------HLT------------------DDD----FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 227 ~-~~~fD~Iv~~~~l~--------------~~~------------------~~~----~~~~l~~~~r~LkpGG~lii 267 (284)
. ..+||+||++-..- |-| +++ ...++.++.++|+|||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 13699999874310 100 012 36778888899999998887
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.5e-09 Score=92.04 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=86.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|+|.|.|+|.++..|+....+ +|+.+|+-+.+.+.|++++...++ ..++++...|+.+...++ .||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccccccc-ccC
Confidence 678999999999999999998864333 899999999999999999988765 345888889998877665 899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+.-.. +.-.++..+.++|+|||.+++.-
T Consensus 166 av~LDmp-------~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 166 AVFLDLP-------DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEEEcCC-------ChHHHHHHHHHHhCCCcEEEEEc
Confidence 9987543 55689999999999999999853
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.04 E-value=6.8e-10 Score=92.64 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~I 234 (284)
..+||||||.|.+...++...+. .++|+|++...+..+.+++...+ ..|+.++++|+..+- ++++++|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------LKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------TSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------ccceEEEEccHHHHHhhcccCCchheE
Confidence 38999999999999999988877 89999999999999988876654 368999999988732 456899999
Q ss_pred EecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++.=-+..... -..++..++++|+|||.|.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9876543332111 357999999999999999886
No 159
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7.1e-10 Score=89.88 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+.+|+|+|||||.++...+..++..|+++|+.+++++.++++.... ..+++|+++|+.++. +.||.|
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceE
Confidence 3456789999999999999888788889999999999999999998762 356999999999876 678999
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
+++..+
T Consensus 113 imNPPF 118 (198)
T COG2263 113 IMNPPF 118 (198)
T ss_pred EECCCC
Confidence 988554
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.03 E-value=8e-10 Score=90.54 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=74.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
..++.+|||+|||+|..+..++.. +..+|+.+|.++ .++..+.++..++. ....++.+...+..+.. .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 456789999999999999977766 455899999999 99999998876431 11345777777775521 2346
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+||+|+++.++.. ++....+++.+.++|+|+|.++++-..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 8999999999886 347889999999999999988877543
No 161
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.03 E-value=2.8e-09 Score=92.55 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=86.9
Q ss_pred CCceEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCC---------------------CC-
Q 023288 157 QHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAP---------------------EN- 204 (284)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~---------------------~~- 204 (284)
...+|+-.||+||. ++..+.+.+. -+|+|+|+|..+|+.|+.-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999994 3343333331 2799999999999999852211 01
Q ss_pred CC-CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE--eccC
Q 023288 205 HM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (284)
Q Consensus 205 ~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (284)
+. .......+.|...|+.+-++..+.||+|+|.+|+.++..+....+++.++..|+|||.|++. |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 10 12223467888888877663447899999999999999888999999999999999999996 5544
No 162
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.03 E-value=1.3e-09 Score=97.77 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=76.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ .+++|+++|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45799999999999999988765 5799999999999999999876543 468999999987642 235799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...-..+. ..+++ ....++|++.++++-+
T Consensus 246 ~dPPr~G~~----~~~~~-~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELCD-YLSQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHHH-HHHHcCCCeEEEEECC
Confidence 885522222 12333 3344788888888754
No 163
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=2.3e-08 Score=87.21 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.. .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 4567899999999999999998774 4699999999999999998754 24689999999887755 48999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+++...+.
T Consensus 96 v~NlPy~i 103 (258)
T PRK14896 96 VSNLPYQI 103 (258)
T ss_pred EEcCCccc
Confidence 99877553
No 164
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.91 E-value=7.9e-09 Score=94.79 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++.++ .+|+|+|+++.+++.|+++++..+. .+++|+++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 45689999999999999888665 5799999999999999999876543 368999999876432 124699999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.-.-..+. ..+++.+. .++|++.++++-+
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 987644333 24555554 4799999998754
No 165
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.90 E-value=7.9e-09 Score=96.69 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=77.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (284)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+. .+++++.+|+.++ ...+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 345679999999999999988755 45799999999999999999876543 4689999998653 123457
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
||+|++...-..+. ..+++.+.+ ++|++.++++-
T Consensus 363 ~D~vi~dPPr~G~~----~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKGCA----AEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCCCC----HHHHHHHHh-cCCCEEEEEcC
Confidence 99999765522211 255665554 89999888863
No 166
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=87.13 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=78.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----CCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 229 (284)
.++..|||+|||+|.++..++...+. .|+++|.|+.++..|.+++...++. ..+..+..+++. .+...+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-----CceEEEecccccccccccccccC
Confidence 34558999999999999999876555 8999999999999999998876552 344555443332 123458
Q ss_pred ceeEEEecchhccCCh------------------------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLTD------------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~------------------------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|+++++-..-.-.+ +.+..++.-+.|.|+|||.+.+.-+
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 9999998843211000 0245567778899999999988644
No 167
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.90 E-value=1.2e-09 Score=100.60 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=72.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcE--EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEV--DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v--~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-..+||+|||+|.++.+|+.++...+ .--|..+.+++.|-++--. .-+-...-..+|+++++||+|
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp-----------a~~~~~~s~rLPfp~~~fDmv 185 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP-----------AMIGVLGSQRLPFPSNAFDMV 185 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc-----------hhhhhhccccccCCccchhhh
Confidence 344789999999999999998866521 1225555667666555211 111122346789999999999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+.++......+ ..+|-++.|+|||||+|+++-.
T Consensus 186 Hcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 186 HCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hcccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 9999876554333 3588999999999999999743
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.89 E-value=6.1e-09 Score=88.52 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=85.2
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~I 234 (284)
..+||||||.|.+...++...+. .++|||+....+..|-+++...++ .|+.+++.|+..+- +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 57999999999999999988887 899999999999999998877653 28999999987652 455699999
Q ss_pred EecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++.=-|..... ...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 9887643332111 357999999999999999996
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.89 E-value=1.9e-08 Score=88.35 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=62.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.. .+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 45678999999999999999997765 799999999999999987642 46889999999887653225888
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 887654
No 170
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=1e-08 Score=85.15 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=76.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD 232 (284)
.+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...+. ..++++++.|+.++ . . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4678999999999999999999887899999999999999999876543 23578898988543 1 1 122 478
Q ss_pred EEEecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~ 270 (284)
+|+....+..- ....++..+. .+|+++|.+++ |+
T Consensus 124 vv~~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~-E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNG---ALQALLELCENNWILEDTVLIVV-EE 159 (189)
T ss_pred EEEECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence 88877665431 2334444443 46888886665 44
No 171
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.87 E-value=4.1e-08 Score=84.92 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
...+.+||||.||.|+.....+..... ++...|+|+..++..++.++..|+ ...++|.+.|+.+.. .-+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 357789999999999998888876553 899999999999999999998877 344589999876642 112
Q ss_pred CceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~e 269 (284)
-..++++.+..++.|++.+ +...++-+.+.+.|||+++.+-
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 3579999999999999866 4557999999999999999873
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=6.3e-09 Score=97.08 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=74.1
Q ss_pred CceEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+..|||+|||+|.++...++.+ ..+|++|+-|+.++...+++....++ ..+++++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 5789999999999988766544 34899999999888777666444433 46799999999999866 4999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+||+-+.=.....+-....+..+.+.|||||.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998665333333346678889999999998765
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=2.2e-08 Score=87.08 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD-- 232 (284)
..++.+|||||||+|.++..+++.+. .|+++|+++.|++.+++++.. ..+++++.+|+.+++++ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 45678999999999999999987765 599999999999999988753 25688999999887754 566
Q ss_pred -EEEecchhc
Q 023288 233 -VIWVQWCIG 241 (284)
Q Consensus 233 -~Iv~~~~l~ 241 (284)
+|+++..++
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 777766544
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.84 E-value=1.6e-08 Score=90.30 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=61.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEE-cCCCCCC----CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~----~~~~ 229 (284)
.+.+|||||||+|.+...++.+.+. +++|+|+++.+++.|++++... ++ ..++++.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5689999999999888867665433 7999999999999999999875 44 34566653 3332221 2356
Q ss_pred ceeEEEecchhccCC
Q 023288 230 RYDVIWVQWCIGHLT 244 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~ 244 (284)
.||+|+|+-.++--.
T Consensus 189 ~fDlivcNPPf~~s~ 203 (321)
T PRK11727 189 RFDATLCNPPFHASA 203 (321)
T ss_pred ceEEEEeCCCCcCcc
Confidence 899999999877544
No 175
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.82 E-value=1.2e-08 Score=87.70 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (284)
..++.+|||.|.|+|.++..|++...+ +|+.+|+.+...+.|++++...++ ..++++...|+.+..+. +.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 678999999999999999999865433 899999999999999999988776 46899999998653332 35
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcC-CCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~L-kpGG~lii~e 269 (284)
.||.|+.-.. +.-.++..+.++| ||||.+++--
T Consensus 113 ~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 113 DFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp SEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEEC
Confidence 7999886543 3337899999999 8999998853
No 176
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=6.9e-08 Score=74.94 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCceEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeE
Q 023288 156 NQHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~ 233 (284)
.++.+|||||||+|. ++..|.+.+. +|+++|+++..++.++++. ++++.+|+.+..++ -..+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCE
Confidence 356789999999996 8877775555 5999999999999998763 46888999875533 357999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++... +.++...+.++++.+. .-++|.-
T Consensus 81 iysirp-----p~el~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 81 IYSIRP-----PRDLQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred EEEeCC-----CHHHHHHHHHHHHHcC--CCEEEEc
Confidence 998876 4577777777777554 5566653
No 177
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=2e-08 Score=85.48 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=61.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHH-HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~-ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||||.++..+++.+..+|+++|+++.|+.. .++...-..+. ..|++ ..+.+++..+-..||++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----~~ni~--~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----RTNIR--YVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----cCCcc--cCCHhHcCCCceeeeEE
Confidence 3567899999999999999998877789999999988876 33321100000 11222 12222222222468877
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++.. ..+..+.+.|+| |.+++
T Consensus 148 fiS~~----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 148 FISLI----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EeehH----------hHHHHHHHHhCc-CeEEE
Confidence 77665 346778888999 76655
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.79 E-value=3e-08 Score=86.87 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=84.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+..|||+|||.|.++...+..+..+|++|+.| +|.+.|++..+.+.+ ..++.++.+-+++..++ ++.|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEE
Confidence 34567899999999999998888888899999976 699999999887655 57889999999988776 589999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+-..-..+-.+......-.+++.|||.|.++=+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 9865433333344444555567999999987643
No 179
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.78 E-value=4.5e-08 Score=86.01 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (284)
-.+.+|||+|||+|..+..+..- ...+++++|.|+.|++.++..+...... ...........+ .++ ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-----RNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-----ccchhhhhhhcccccC--CCCc
Confidence 35679999999999877655432 2338999999999999999887653210 111111111111 112 2349
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
+|+++++|..++......+++++.+.+.+ .|+++|.-.+.|+
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999999999987788889988888776 9999999887775
No 180
>PLN02823 spermine synthase
Probab=98.77 E-value=6.3e-08 Score=87.15 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..+.+||.||+|.|..+..+++.. ..+++.||+++.+++.|++.+...+- ....++++++..|...+- ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 356799999999999999888643 44899999999999999998864211 011467889999887653 23468999
Q ss_pred EEecchhccC---Chhh--HHHHHH-HHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHL---TDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~---~~~~--~~~~l~-~~~r~LkpGG~lii~ 268 (284)
|++-.. ... +... -..+++ .+.+.|+|||++++.
T Consensus 180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 997632 110 0000 236787 899999999998764
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.76 E-value=9.3e-08 Score=84.70 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++.... +|+++|+++.|++.+++++...+. ..+++++++|+.+.+.+ .||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhccc--ccCEE
Confidence 45678999999999999999987654 699999999999999998865332 25689999999876643 68999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+++...+.
T Consensus 106 vaNlPY~I 113 (294)
T PTZ00338 106 VANVPYQI 113 (294)
T ss_pred EecCCccc
Confidence 98765543
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.72 E-value=8.2e-08 Score=79.05 Aligned_cols=111 Identities=22% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-c---------EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~---------v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
..++..|||--||+|.+....+..... . +.|+|+++.+++.|++++...+. ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 457789999999999999876654333 2 78999999999999999987655 35688999999999
Q ss_pred CCCCCceeEEEecchhccC-Ch-hh----HHHHHHHHHhcCCCCcEEEEEec
Q 023288 225 TPETGRYDVIWVQWCIGHL-TD-DD----FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 225 ~~~~~~fD~Iv~~~~l~~~-~~-~~----~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++++|+|+++..+..- .. .+ ...+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 8667899999998765532 21 11 45678999999999656666543
No 183
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.72 E-value=4.4e-08 Score=89.38 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.+|||+=|=||.++...+..+..+|+.||.|...|+.|++++.-+++. ...+.|+++|+-++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 47899999999999999888778878999999999999999999987763 355789999987653 2234899
Q ss_pred EEEecc-hhccCC------hhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQW-CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~-~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++-. .+.--+ ..+...++..+.++|+|||.++++-+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999643 121111 125778999999999999999998653
No 184
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.69 E-value=1.5e-08 Score=91.74 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=93.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++..++|+|||.|....++..-....++|+|.++..+..+.......++ .....+..+|+...+++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcEE
Confidence 45568999999999999988765556899999999999988877665444 2334567789988899999999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+..+.+|.+ +...+++++.|+++|||+++..|.+...
T Consensus 184 ~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 184 FLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred EEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 999999999 7779999999999999999998876443
No 185
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.8e-08 Score=78.10 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-.+.+++|+|||.|.++....-.....|.|+|+.|+.++.++++.... ..++++.++|+.++.+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 467899999999999997655455558999999999999999998764 4567999999999887779999999
Q ss_pred ecchhc
Q 023288 236 VQWCIG 241 (284)
Q Consensus 236 ~~~~l~ 241 (284)
.+..+.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 887765
No 186
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.67 E-value=1.9e-07 Score=81.93 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=82.6
Q ss_pred CceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
+.+||-||.|.|..++.+++.. ..+++.||+.+..++.+++.+........ .++++.+..|..++-- ...+||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3699999999999999998654 34899999999999999999876542222 4778888888877642 223899999
Q ss_pred ecchhccCCh-hh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTD-DD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~-~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-..=. ..+ +. -..+++.|++.|+|+|+++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 765422 111 01 247999999999999999886
No 187
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.9e-07 Score=83.01 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=85.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~ 233 (284)
..++..|||-=||||.+.....-.+. .++|+|++..|++-|+.|+...+. ....+... |+..+++++.+||.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 67888999999999999997664455 599999999999999999987643 23334444 99999988778999
Q ss_pred EEecchhccCC-------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~-------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++-....--+ ++=...+++.+.++|++||++++.-.
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99654322211 12267899999999999999999754
No 188
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=4.8e-07 Score=75.71 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
..++..+++ .-.+.++||||.=||..+..++...+. +|+++|+++...+.+.+..+..|. ...+++
T Consensus 62 g~fl~~li~-------~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIR-------LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHH-------HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 345555554 235679999999999999888876555 899999999999999888877665 567899
Q ss_pred EEcCCCCC------CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 217 FCVPLQDF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 217 ~~~d~~~~------~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
++++..+. ..+.++||++|.-.- ..+....+.++.+++|+||+|++ ||+.-.|.+.+|.
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DNvl~~G~v~~p~ 194 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DNVLWPGVVADPD 194 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-eccccCCcccCcc
Confidence 99876542 134679999985332 23455889999999999997766 8866656665553
No 189
>PRK00536 speE spermidine synthase; Provisional
Probab=98.65 E-value=1.1e-07 Score=82.40 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.+.+.+||=||.|.|..++.+++ +..+|+.||+.+.+++.+++.+..... ..-.++++++.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLk-h~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFK-YDTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHC-cCCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 45678999999999999999994 455899999999999999997664221 111345555542 211 123689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+-..+ + ..+++.+.+.|+|||.++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 977541 1 37889999999999999885
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.63 E-value=1.2e-07 Score=90.32 Aligned_cols=107 Identities=16% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (284)
.....+||||||.|.++..++...+. .++|+|++...+..+.++....++ .|+.+++.|+..+. ++++++|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 35678999999999999999988776 899999999988888777655443 56777777764332 5678999
Q ss_pred EEEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+.++.=-|..... -..+++.++++|||||.|.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 999887644432111 357999999999999999886
No 191
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.62 E-value=3.3e-08 Score=81.59 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.++||+=||+|.++...++++..+|+.||.++..+...+++++..+. ...+..++.|....- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 5789999999999999999999999999999999999999999876543 235778888854321 1347899
Q ss_pred EEEecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~~~ 272 (284)
+|++......-. ....++..+. .+|+++|.+++ |+..
T Consensus 117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~-E~~~ 155 (183)
T PF03602_consen 117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIII-EHSK 155 (183)
T ss_dssp EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEE-EEET
T ss_pred EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEE-EecC
Confidence 999987655422 1356777776 78999997776 5433
No 192
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.59 E-value=5.9e-07 Score=80.26 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=82.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 226 (284)
.++..|+|+|||.|.-+..|++.. ...++++|+|..+|+.+.+++....+ ....+.-+++|..+. +.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhccc
Confidence 356689999999999888777643 22699999999999999998872211 122344477777552 11
Q ss_pred --CCCceeEEEe-cchhccCChhhHHHHHHHHHh-cCCCCcEEEEE-ecc
Q 023288 227 --ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK-ENI 271 (284)
Q Consensus 227 --~~~~fD~Iv~-~~~l~~~~~~~~~~~l~~~~r-~LkpGG~lii~-e~~ 271 (284)
......+|+. ..++.++++++...+|+++++ .|+|||.|++. |.+
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 1223566655 458999999999999999999 99999999986 544
No 193
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.59 E-value=1.6e-07 Score=86.17 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=77.0
Q ss_pred CceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+.+|||++||+|..+..++.... .+|+++|+++.+++.++++++.+++ .++++.+.|+..+......||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 45899999999999999876543 4799999999999999999876553 2456888888664321357999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.-. . ....++..+.+.+++||.++++
T Consensus 132 DP~--G----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF--G----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC--C----CcHHHHHHHHHHhcCCCEEEEE
Confidence 642 2 2236888877889999999998
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.58 E-value=2.2e-07 Score=84.89 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CC---------
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~--------- 227 (284)
.+|||++||+|.++..++ +.+.+|+++|+|+.+++.+++++...++ .+++++.+|+.++. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA-RNFRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999766 4556899999999999999999876543 36889999986631 10
Q ss_pred -----CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+||+|+..-.-..+. ..+++.+.+ |++.++++-+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeC
Confidence 12589999876632222 245555544 7888888744
No 195
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.58 E-value=1.7e-07 Score=85.39 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=70.8
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-----------
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 227 (284)
.+|||++||+|.++..++ +++.+|+|+|+|+.+++.|++++...++ .+++++++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 479999999999999776 4456799999999999999999876543 3688999988764210
Q ss_pred -----CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...||+|+..-.=..+ ...+++.+.+ |++.++++-+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEEcC
Confidence 1137999986652221 2245555543 7888888743
No 196
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.57 E-value=8.3e-08 Score=84.26 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=79.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (284)
++.+|||+=|=||.++...+..+..+|+.||.|..+++.+++++..+++. ..++++++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46799999999999999888777778999999999999999998876652 246889999886532 12468999
Q ss_pred EEecch-hcc--C-ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWC-IGH--L-TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~-l~~--~-~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+-.. +.- + -..+...++..+.++|+|||.+++.-+
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 996421 110 0 023577899999999999999887654
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.56 E-value=4.6e-07 Score=78.72 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=82.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC----C----------------------C-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----E----------------------N----- 204 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~----~----------------------~----- 204 (284)
..+.+||--|||.|+++..++..++. +.|.|.|--|+-..+-.+.. . .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45679999999999999999999886 99999999997665442211 0 0
Q ss_pred ---CCCCCCCcceeEEEcCCCCCCCCC---CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 205 ---HMAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 205 ---~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
........+.....+|+.++-.++ ++||+|+.++.+...+ ++...+..+.++|||||..+-.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEec
Confidence 000111235666777877765444 7999999998887655 8999999999999999976653
No 198
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.55 E-value=1.8e-06 Score=67.34 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=72.1
Q ss_pred EEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc-eeEEEcCCCC--CCCCC-CceeEE
Q 023288 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI 234 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~fD~I 234 (284)
++|+|||+|..+ .+..... ..++++|+++.++..++...... ... +.+...+... +++.. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 2332222 25899999999999965554221 111 5677777765 56665 489999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.+....++.. ....+.++.+.|+|+|.+++.+....
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444444444 56899999999999999999876543
No 199
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=6.8e-07 Score=72.02 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=76.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+.-+||||||+|..+..+++.... .+.++|++|..++..++.+..+ ..+++.++.|+..-- .+++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l-~~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGL-RNESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhh-ccCCccEEE
Confidence 567999999999999988875443 6899999999999988887664 234778888876533 237899998
Q ss_pred ecchhccCChh-------------------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~-------------------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+...--.+++ -...++..+-..|.|.|++++.-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 76432221111 13466777778889999999863
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.51 E-value=8.9e-07 Score=83.15 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=82.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
+.++.+|||++||.|.-|..+++.... .|+++|+++.-++..++++...|+ .++.+...|...+. ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 568889999999999999998876533 799999999999999999987664 45677778877653 223579
Q ss_pred eEEE----ecc--hhccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIW----VQW--CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv----~~~--~l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.|+ |+. ++..-+ .++ ...+|.++.++|||||+|+.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999 442 232211 111 267899999999999999775
No 201
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.49 E-value=1.6e-07 Score=78.51 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=84.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (284)
+.++.+|||...|-|+.++..++++...|+-++.+|..++.|.-+-=..++ +...++++.+|..++ .+++.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 567899999999999999999999997899999999999988655322222 233678899998775 37788999
Q ss_pred EEEecch-hccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~-l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+--.. |.+...---..+.++++|+|||||.++-.-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9984321 222221123479999999999999998753
No 202
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.48 E-value=2.7e-07 Score=77.01 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++..|+|+-||.|.++..++.. ....|+++|++|..++.+++++..+++ ...+..+++|..++.. .+.||.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCE
Confidence 346789999999999999998863 344799999999999999999887655 3568889999988765 579999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
|++...-. -..++..+.+++++||.+-
T Consensus 173 vim~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred EEECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 99876522 1258888999999999874
No 203
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.8e-07 Score=72.74 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCC--cEEEEeCCHHHHHHHHHHcCCCCC----CCCCCCcceeEEEcCCCCCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~--~v~gvD~S~~~l~~ar~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~ 228 (284)
.++.+.||+|.|+|+++..++.. +.. ..+|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 48899999999999999877643 222 359999999999999998764210 00001235678888988877777
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+||.|++...-. ..-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8999999874422 4556777889999999884
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.47 E-value=9.3e-07 Score=72.90 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=75.7
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+++|||+|.|.-+..++-..+. +++.+|.+..-+...+......++ .|+++++..+++ .....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 8999999999999887766665 799999999987777766655544 578899998888 44457999999987
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+- .+..++.-+...|++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 73 4568999999999999998885
No 205
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=2e-07 Score=80.27 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+..++|+|||.|-.+. ..+ ..++|.|++...+..+++.-. .....+|+..+|+.+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccch
Confidence 46789999999997654 222 158999999999988875422 1467789999999999999999
Q ss_pred ecchhccCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..++||+.... ...+++++.|.|+|||...+.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999996444 677999999999999986664
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.42 E-value=1.8e-07 Score=80.96 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCC-cee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-~fD 232 (284)
+++.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ...++++++..|...+- -... +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999888443 248999999999999999986532110 11457889999876542 1223 899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+.-..-...+... -..+++.+.+.|+|||.+++.-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643321111111 2479999999999999999864
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.5e-06 Score=72.00 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~ 233 (284)
..++..|||||+|.|.+|..|+++... |+++++.+.+++..++++.. ..+++++.+|+...+++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 456789999999999999999977665 99999999999999999864 4679999999998887632 5788
Q ss_pred EEecchh
Q 023288 234 IWVQWCI 240 (284)
Q Consensus 234 Iv~~~~l 240 (284)
|+++-..
T Consensus 99 vVaNlPY 105 (259)
T COG0030 99 VVANLPY 105 (259)
T ss_pred EEEcCCC
Confidence 8877554
No 208
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=2.7e-06 Score=76.23 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=91.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||.=||.|.++..++..+...|+++|++|..++..++++..++. ...+..+++|..+.....+.||-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35889999999999999999877776799999999999999999988765 3348899999998876657899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+...- .-..++..+.+.+++||.+-+.+++..+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 98763 22368888888999999999999876554
No 209
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.34 E-value=5.2e-07 Score=77.90 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCC-CCCC---------------------CCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPD---------------------MHK 212 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~-~~~~---------------------~~~ 212 (284)
..++.++||||||+-..-..-+.+.+.+++..|.++..++..++.+...+- .+.. ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 345779999999996654433446777999999999999988876654311 0000 011
Q ss_pred ce-eEEEcCCCCCC-CCC-----CceeEEEecchhccCC--hhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 213 AT-NFFCVPLQDFT-PET-----GRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 213 ~~-~~~~~d~~~~~-~~~-----~~fD~Iv~~~~l~~~~--~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+ .++.+|+...+ +.+ .+||+|++.++++... .++...+++++.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 22 35667887754 222 3599999999998764 3458889999999999999999986543
No 210
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.33 E-value=3.4e-06 Score=69.08 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCC-CCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~fD 232 (284)
-.+.++||+=+|+|.++...++++...++.||.+...+...+++.+..++ ..+..++..|...+ ... .+.||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence 36789999999999999999999999999999999999999999876543 35677777777643 122 23599
Q ss_pred EEEecchhccCChhhHHHHHHH--HHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~--~~r~LkpGG~lii~ 268 (284)
+|+.-..++.-- -+....+.. -...|+|+|.+++-
T Consensus 117 lVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 117 LVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 999988877211 011223333 45779999988884
No 211
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.27 E-value=2.5e-06 Score=78.01 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=79.5
Q ss_pred CceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
+.+|||+-||+|..+..++.+ +..+|+++|+++..++.++++++..+. .++.+.+.|+..+.. ....||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 468999999999999999987 556899999999999999999876542 357788888776532 13579999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.... + ..+ ..++..+.+.+++||.++++
T Consensus 119 dlDP-f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 9865 3 222 27899999999999999998
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=7.5e-06 Score=68.85 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=76.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+.+++|||+|.|.-+..++--.+. +|+.+|....-+...+......++ .|++++++.++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999999877633333 699999998877777776666554 6789999999987643212999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..+- .+..++.-+...+|+||.+++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcchh
Confidence 7762 556788889999999988653
No 213
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.25 E-value=2.1e-06 Score=75.89 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCC-
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG- 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~- 229 (284)
+.++..++|++||.|..+..+++... .+|+|+|.++.|++.+++++.. ..++.+++.++.++. .+.+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45678999999999999999998764 3799999999999999988754 246889999888763 2212
Q ss_pred -ceeEEEec
Q 023288 230 -RYDVIWVQ 237 (284)
Q Consensus 230 -~fD~Iv~~ 237 (284)
+||.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 79999865
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.24 E-value=6.6e-06 Score=70.51 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
...++..|||+|.|||.+|..+++.+.. |+++++.+.|+....++...... ....+++.+|+...+.+ .||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--ccce
Confidence 3678899999999999999999977665 99999999999999999876432 35678899998876654 6999
Q ss_pred EEecc
Q 023288 234 IWVQW 238 (284)
Q Consensus 234 Iv~~~ 238 (284)
+|++.
T Consensus 127 cVsNl 131 (315)
T KOG0820|consen 127 CVSNL 131 (315)
T ss_pred eeccC
Confidence 99753
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.24 E-value=3e-07 Score=75.57 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=73.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
...+.++||+|+|.|.++..++ +.+.+|.+++.|..|..+.+++.- + +....++.-.+-+||+|
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y-----------n----Vl~~~ew~~t~~k~dli 173 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY-----------N----VLTEIEWLQTDVKLDLI 173 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC-----------c----eeeehhhhhcCceeehH
Confidence 4567899999999999999765 777789999999999998876521 1 12222222223579999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCC-CcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~Lkp-GG~lii~ 268 (284)
.|-+.+.-.- +.-.+++.++.+|+| +|.++++
T Consensus 174 ~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 174 LCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 9999987666 445899999999999 8988875
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.21 E-value=3.1e-06 Score=68.64 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=83.1
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
..+.|+|+|+|.++. +++....+|++++.+|.-.+.|.+++.-.| ..+++.+.+|+.++.++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccccccc--ccceeHHHH
Confidence 678999999999999 565767799999999999999999976554 36899999999998884 579999865
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.=..+-.+....+++.+...||-++.++=.+
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 4333444566788999999999999887644
No 217
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.20 E-value=1e-05 Score=74.81 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=88.4
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
.++|-+|||.-.++..+.+.++..|+-+|+|+..++.+..+.... ..-..+...|+..+.+++.+||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 489999999999999999999999999999999999888776421 3557889999999999999999999999
Q ss_pred hhccCChhh--------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 239 ~l~~~~~~~--------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++++-.++ ....+.+++|+|+|||+++..-.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 988873222 24568899999999999777644
No 218
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.19 E-value=1.4e-05 Score=69.15 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccc--cHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCC
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGt--G~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~ 210 (284)
....+.|+.+.+..+..+ ..-...||||||- -...-.+++...+ +|+.||..|-.+..++..+...
T Consensus 49 ar~nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------- 118 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------- 118 (267)
T ss_dssp HHHHHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------
Confidence 445567777776655442 1234799999993 3344446554333 8999999999999999998763
Q ss_pred Ccc--eeEEEcCCCCCC-----------CCCCceeEEEecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 211 HKA--TNFFCVPLQDFT-----------PETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 211 ~~~--~~~~~~d~~~~~-----------~~~~~fD~Iv~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+ ..++.+|+.+.. +.-..-=.|++..++||+++ ++...+++.+...|.||.+|+|+-.+.
T Consensus 119 -~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 119 -PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred -CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 34 789999987632 11122335778899999987 678999999999999999999986543
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.18 E-value=6.4e-06 Score=73.71 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=69.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHh--------CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~--------~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++.+|+|..||+|.+...+... ...+++|+|+++.++..|+-++.-.+.. ..+..+...|....+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 567779999999999998887753 2237999999999999988765322210 1223466777544332
Q ss_pred -C-CCceeEEEecchhccC--Chh-----------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 -E-TGRYDVIWVQWCIGHL--TDD-----------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 -~-~~~fD~Iv~~~~l~~~--~~~-----------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ...||+|+++..+... ... .-..++..+.+.|++||++.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 4689999988654432 100 1125889999999999987665
No 220
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.16 E-value=1e-05 Score=67.51 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=72.7
Q ss_pred cHHHHHHHHHhhcCC-ccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 138 SEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~-~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
+..++..++...... .......++|||||=+......- ...+ .|+.||+++ ..-.+
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I 87 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGI 87 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCc
Confidence 344555555544332 11223479999999755443321 1344 499999975 11234
Q ss_pred EEcCCCCCCC---CCCceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcE-----EEEE
Q 023288 217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLK 268 (284)
Q Consensus 217 ~~~d~~~~~~---~~~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~-----lii~ 268 (284)
.+.|+-+.|. +.++||+|.++.||.++|++. .-..++++.+.|+|+|. |+++
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 5666666654 357999999999999998544 66799999999999999 7776
No 221
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.13 E-value=1.7e-06 Score=69.69 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=52.9
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc-eeEEEe
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR-YDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~Iv~ 236 (284)
.|+|+.||.|..+..+++. +.+|+++|+++..++.|+.++.-.|. ..+++++++|+.++. ..... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999855 66799999999999999999887664 468999999987653 12122 899996
Q ss_pred c
Q 023288 237 Q 237 (284)
Q Consensus 237 ~ 237 (284)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
No 222
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.12 E-value=1.4e-05 Score=79.11 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=78.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHHH
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF 192 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~~ 192 (284)
.++..++|.+||+|.+.+..+... ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356789999999999988765420 0158999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEEecchhccC-C-hhhHHHHHHHHHhcCC---CCcEE
Q 023288 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL-T-DDDFVSFFKRAKVGLK---PGGFF 265 (284)
Q Consensus 193 l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Iv~~~~l~~~-~-~~~~~~~l~~~~r~Lk---pGG~l 265 (284)
++.|++++...|+ ...+++.++|+.+++.+ .++||+|+++..+..- . ..++..+.+.+.+.+| ||+.+
T Consensus 269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9999999988765 34588999999887643 3579999999765322 1 2344555555555444 88877
Q ss_pred EEE
Q 023288 266 VLK 268 (284)
Q Consensus 266 ii~ 268 (284)
++.
T Consensus 344 ~ll 346 (702)
T PRK11783 344 ALF 346 (702)
T ss_pred EEE
Confidence 665
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.12 E-value=7.7e-07 Score=73.28 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------C--C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------~--~ 226 (284)
.+.+|||+||++|.++..++.+. ...|+|+|+.+. .. ..++.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~-----------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP-----------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc-----------ccceeeeecccchhhHHHhhhhhc
Confidence 56899999999999999888776 348999999875 00 12233333333221 0 1
Q ss_pred --CCCceeEEEecchhccCCh---------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 --~~~~fD~Iv~~~~l~~~~~---------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+.||+|++-.+...... .-....+.-+...|+|||.+++.-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1258999998773322211 113445556667899999988864
No 224
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.2e-05 Score=73.08 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (284)
..++.++||+=||.|.++..++ ....+|+|+|+++++++.|+++++.++. .|++|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 4566799999999999999888 5555799999999999999999988764 5688999999887533 2478
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|+..-.=..+. . .+++.+.+ ++|-..++++-|
T Consensus 364 d~VvvDPPR~G~~--~--~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 364 DVVVVDPPRAGAD--R--EVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CEEEECCCCCCCC--H--HHHHHHHh-cCCCcEEEEeCC
Confidence 9999765533333 1 45555543 578888888865
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.09 E-value=2.7e-05 Score=64.63 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+||++|-|-|.....+-+.-+.+-+.++..|..+++.|...-.. ..++....+-.++. ..+++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 578999999999999988776666668899999999999998875432 34566666655553 255788999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+--..-.+- +++..+.+.+.|+|||+|++-+--
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 9865443332 478889999999999999988753
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=3.8e-05 Score=67.10 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC---Cce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~f 231 (284)
..++..|||||+|+|.+|..++..+ .+++++|+++.+.+..++++.. ..+++++.+|+.++.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4478899999999999999999777 6799999999999999998874 467999999999887543 456
Q ss_pred eEEEecchhccCChhhHHHHHHHHHh
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKV 257 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r 257 (284)
..|+++-.. +++ ..++.++..
T Consensus 99 ~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 99 LLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp EEEEEEETG-TGH----HHHHHHHHH
T ss_pred eEEEEEecc-cch----HHHHHHHhh
Confidence 677777654 444 245555554
No 227
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.06 E-value=3.3e-05 Score=64.87 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCceEEEeeccccHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHcC-------CCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-~~~~~v~gvD~S~~~l~~ar~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++...+|||||.|......+. .++.+.+||++.+...+.|+.... ..+. ....+++..+|+.+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~----~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK----RPGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc----ccccceeeccCccccHh
Confidence 56788999999999998776554 355579999999998887765322 1111 12457788888766431
Q ss_pred CC---CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 227 ET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 227 ~~---~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
.. ...|+|+++... + ++++...+.+....||||-+++-.....+..
T Consensus 116 ~~~~~s~AdvVf~Nn~~--F-~~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTC--F-DPDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred HhhhhcCCCEEEEeccc--c-CHHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 10 247999998763 2 2466677788889999998877655544433
No 228
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.05 E-value=1.8e-05 Score=75.94 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 224 (284)
...+|||.|||+|.+...++.... ..++|+|+++..+..++.++...+. ..+...+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999998876432 2689999999999999988765331 1123333332211
Q ss_pred --CCCCCceeEEEecchhc
Q 023288 225 --TPETGRYDVIWVQWCIG 241 (284)
Q Consensus 225 --~~~~~~fD~Iv~~~~l~ 241 (284)
....+.||+|+++-...
T Consensus 105 ~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccCcccEEEeCCCcc
Confidence 11125899999886544
No 229
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=2e-05 Score=64.53 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=77.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+.+|||+|+|+|..++..+..+...|+..|+.|......+-+.+.++ .++.+...|+.. ++..||+|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-------v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-------VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-------ceeEEeeccccC---CCcceeEE
Confidence 34678999999999999998887888899999999988888888877654 457777777765 34689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...++..-+ .-..++....++...|-.+++-+.
T Consensus 147 LagDlfy~~~--~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 147 LAGDLFYNHT--EADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred EeeceecCch--HHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999876544 344677744444444555555554
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.03 E-value=5.2e-06 Score=68.97 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
....|+|.-||.|..+..++..++. |+++|++|.-+..|+.+++-.|. ..+++|+++|+.++- +....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 3467999999999999999977776 99999999999999999998877 468999999987642 3334577
Q ss_pred EEEecch
Q 023288 233 VIWVQWC 239 (284)
Q Consensus 233 ~Iv~~~~ 239 (284)
+|+.+..
T Consensus 168 ~vf~spp 174 (263)
T KOG2730|consen 168 CVFLSPP 174 (263)
T ss_pred eeecCCC
Confidence 8876544
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.94 E-value=7.1e-05 Score=59.10 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCCceEEEeeccccHHHHHHHH-----hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-----~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (284)
..+..+|+|+|||.|.++..++. ....+|+++|.++..++.++++....+. ....+..+...+..+... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence 35678999999999999998886 4333899999999999999888765431 112345555555544322 34
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..++++.-.+-..++ + .+++.+.+ |+-.+++
T Consensus 99 ~~~~~vgLHaCG~Ls--~--~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 99 PPDILVGLHACGDLS--D--RALRLFIR---PNARFLV 129 (141)
T ss_pred CCeEEEEeecccchH--H--HHHHHHHH---cCCCEEE
Confidence 678888655554444 2 34444444 4444443
No 232
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.0002 Score=64.84 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC----------------------------------------cEEEEeCCHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD 194 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~----------------------------------------~v~gvD~S~~~l~ 194 (284)
-.++..++|-=||+|.+.+..+..... .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 345568999999999999887754421 2779999999999
Q ss_pred HHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhc-cCChhh-----HHHHHHHHHhcCCCCcEEEEE
Q 023288 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDDD-----FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 195 ~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~-~~~~~~-----~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+.++...|. ...+.|.++|+..+..+-..+|+|||+.... -+..+. ...+.+.+.+.++--+.++|+
T Consensus 269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988876 5679999999999875546899999996543 222221 234555666777777778776
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00026 Score=64.61 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=81.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
+.++.+|||+.++.|.=|.++++.... .|+++|+|+.=++..+++++..|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 778899999999999999989876543 469999999999999999988765 44667777766543 222
Q ss_pred CceeEEEe------cchhccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWV------QWCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~------~~~l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.||.|+. .++++--| ..+ ...+|..+.+.|||||.|+.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 35999982 22332111 111 356899999999999999986
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=4.9e-05 Score=63.80 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=62.8
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeEEEecc
Q 023288 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIWVQW 238 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~Iv~~~ 238 (284)
|.||||-.|.+..+|++++.. .++++|+++.-++.|+++....++ ..++++..+|-.+ ++.. ...|.|+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999988776 799999999999999999988766 4678999998543 3322 2379998765
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+=.. -...++.+....++..-.|++
T Consensus 75 MGG~----lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 75 MGGE----LIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp E-HH----HHHHHHHHTGGGGTT--EEEE
T ss_pred CCHH----HHHHHHHhhHHHhccCCeEEE
Confidence 4222 233444444444444444444
No 235
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.85 E-value=9.2e-05 Score=67.47 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=53.1
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------------
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------------- 225 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 225 (284)
+|||+=||.|.++..++ ..+.+|+|||+++.+++.|++++..+++ .|++|+.++.+++.
T Consensus 199 ~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence 79999999999999876 6666899999999999999999987664 57888887665432
Q ss_pred --CCCCceeEEEecchhccCC
Q 023288 226 --PETGRYDVIWVQWCIGHLT 244 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~~ 244 (284)
.....+|+|+....=..+.
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp S-GGCTTESEEEE---TT-SC
T ss_pred hhhhhcCCCEEEEcCCCCCch
Confidence 1123689998654433333
No 236
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=6.2e-06 Score=64.79 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=47.5
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++++-......+.+++.|+|++..++.|++-++...++++|++.|||||+|-++
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4444444455568889999999999999999999999999999999999999997
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00015 Score=60.39 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|+|+||-.|.++..+++.... .|+++|+-|-- ...++.++++|+++-+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHHH
Confidence 457889999999999999977766554 49999986511 1356889999988754
Q ss_pred -CCCCceeEEEecchh--------ccCChhh-HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l--------~~~~~~~-~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|++-..- +|..... ...++.-+..+|+|||.+++...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 233457999965332 3332222 33456667789999999999754
No 238
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.00013 Score=65.14 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.++|||||++|.++..+++++. .|++||.++ |-.. +.. ..++.....|...+.++.+.+|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35788999999999999999998877 699999654 2221 222 356777777766655435789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpG 262 (284)
+|-.+- ....+.+-+.+.|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 987662 2335556666666554
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.74 E-value=7.7e-05 Score=58.66 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=45.6
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
.++|+|||+|..+..++..+.. +++++|+++.+.+.+++++...++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 4899999999999988877654 799999999999999999875443 235666555443
No 240
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=7.2e-05 Score=61.17 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHH----------HHHHHHHHcCCCCCCCCCCCcceeEEEcCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL 221 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~----------~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~ 221 (284)
.+++.+|+|+=-|.|.+++-+. .... .|+++-+.+. +-..+++.. ..|.+.+..++
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s-~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~ 114 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFS-PAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPL 114 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhc-hhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCcc
Confidence 5688999999999999999544 4322 5666543322 111121111 23444555555
Q ss_pred CCCCCCCCceeEEEecchhccC-----ChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcc
Q 023288 222 QDFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 222 ~~~~~~~~~fD~Iv~~~~l~~~-----~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
..+. ..+..|+++.+...|-+ .......+...+++.|||||.+.+.|+....|+-
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~ 174 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG 174 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC
Confidence 5555 33567777654333322 2334668999999999999999999997665543
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.70 E-value=0.00025 Score=63.41 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+...+||-+|.|.|...+.+++. ++.+++-||+.|+|++.++.+..-.... +....++++++..|.-++- -....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34568999999999999998842 2348999999999999998432211110 1122467888888887663 2235899
Q ss_pred EEEecc------hhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQW------CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~------~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.||... ++.-+- -..+..-+.+.|+++|.+++.-
T Consensus 368 ~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEec
Confidence 998532 222111 2368888999999999999863
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.69 E-value=0.00042 Score=58.23 Aligned_cols=107 Identities=15% Similarity=0.019 Sum_probs=69.2
Q ss_pred cCCccCCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023288 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (284)
Q Consensus 150 l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (284)
+......++.+||-+|+.+|....++..--. . .|++|+.|+......-..++. ..|+--+..|+....
T Consensus 66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKY 137 (229)
T ss_dssp -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGG
T ss_pred ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHh
Confidence 3334467889999999999999888876432 2 699999999654433333222 356777778876521
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.--+.+|+|++.-.- +++..-++.++...||+||.++++
T Consensus 138 ~~lv~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTTS--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 222489999975441 235667889999999999999886
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.68 E-value=0.00012 Score=63.94 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCceEEEeeccccHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHcC-CCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~-~~v~gvD~S~~~l~~ar~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+.+|+=||||.=-+|.-++... . ..|+++|+++..++.+++... ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 45699999999877777665532 2 268999999999999998776 3333 4678999999877654446899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+...... ++.++..+++.++.+.++||..+++.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 998765443 23346679999999999999999986
No 244
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00019 Score=60.75 Aligned_cols=98 Identities=24% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD 232 (284)
..++..+||+|+-||.++..+++++...|+++|..-.++..--+.- ...+.+...++..+..+ .+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCC
Confidence 3567899999999999999999999999999999988877543331 11233444566554321 13678
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+|++--+|. .+..++..+..+++|+|.++.
T Consensus 147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 999877654 455899999999999997766
No 245
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.0005 Score=59.19 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=77.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 230 (284)
..++.+|||-|.|+|.++.++++...+ +++-+|+...-.+.|++.++..+. ..++++..-|+....+ ....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678999999999999999999876544 799999999999999999988775 6789999999887543 3567
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCc-EEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFV 266 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG-~li 266 (284)
+|.|+.-.. ..-.++-.++.+||.+| +|+
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCceEE
Confidence 898886543 22245556666777766 444
No 246
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=6.5e-05 Score=59.63 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=79.9
Q ss_pred cccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCC
Q 023288 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMA 207 (284)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~ 207 (284)
.....+..+.+.+...+..-.. .-.+.+|||+|.|--.++--+.+...+ .|..+|-+...++..++....+..+.
T Consensus 5 tgnvciwpseeala~~~l~~~n---~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPN---KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS 81 (201)
T ss_pred CCcEEecccHHHHHHHHHhchh---HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence 3344556666666665532211 335679999999954444434433333 79999999999998887654421100
Q ss_pred CCCCcceeEEEcCCCC--CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 208 PDMHKATNFFCVPLQD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 208 ~~~~~~~~~~~~d~~~--~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..++....-+... ...+...||.|++..++-. ++-...+++.+.++|+|.|.-++.-
T Consensus 82 ---~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 82 ---LTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred ---cceehhhHHHHhhhHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 0111111111111 1123458999999998755 3456789999999999999766543
No 247
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=8e-05 Score=66.12 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=73.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
-.+.+|||+|.|.|....++..-.+. .++.++.|+..-+............. ...+..-+..|-..++.. ..|++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~--td~r~s~vt~dRl~lp~a-d~ytl 188 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK--TDWRASDVTEDRLSLPAA-DLYTL 188 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc--CCCCCCccchhccCCCcc-ceeeh
Confidence 35567999999999877654433333 78888989876665544433221100 000111122222233322 47888
Q ss_pred EEecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 234 IWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 234 Iv~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
|+...-+-+... ..+...++.+..++.|||.|+|.|.-.+.|+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 877665555432 2355689999999999999999998888776
No 248
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.51 E-value=2.6e-05 Score=58.26 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEE
Q 023288 162 LDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv 235 (284)
||||+..|..+..+++.. . .+++++|..+. .+..++..+..++ ..+++++.++..+.- ++.++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999988777532 1 25999999985 2223333322222 356899999876541 2246899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.-.. |. .+.....+..+.+.|+|||.+++-|
T Consensus 75 iDg~-H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD-HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC-CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7653 11 1245678899999999999988854
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.49 E-value=0.0001 Score=68.50 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~----~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..-..|+|..+|.|.++.+|.... |+....-|. .+...- +.|+ +-.+..-.+.++.-+.+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIy----dRGL--------IG~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIY----DRGL--------IGVYHDWCEAFSTYPRTY 428 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhh----hccc--------chhccchhhccCCCCcch
Confidence 344579999999999999886442 444443332 122111 1122 111222233455445899
Q ss_pred eEEEecchhccCC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~-~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|.+..+|.... .-++..++-++.|+|||||.++|.|.
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999999887654 23478899999999999999999875
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00097 Score=62.23 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC--C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET--G 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~ 229 (284)
.+.+..++|+-||||.++..++ ++...|+||++++..++.|+.++..+|. .|.+|+++-.++.- +.. +
T Consensus 381 l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeecchhhccchhcccCCC
Confidence 5566889999999999999777 6666799999999999999999998775 67899999555532 111 1
Q ss_pred ceeEEE-ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIW-VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv-~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+=++|. ..-.=-.+. ..+++.+.+.-+|--.++++-|
T Consensus 454 ~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLH----MKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCceEEEECCCccccc----HHHHHHHHhccCccceEEEEcC
Confidence 334332 221111111 1456666555557777777654
No 251
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.39 E-value=0.00051 Score=60.72 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (284)
+.++.+|||+.++.|.-+..++..... .+++.|+++.-+...++++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 667889999999999999988887653 899999999999999988877653 45666666665542 22236
Q ss_pred eeEEEe----cc--hhccCChh-------h-------HHHHHHHHHhcC----CCCcEEEEE
Q 023288 231 YDVIWV----QW--CIGHLTDD-------D-------FVSFFKRAKVGL----KPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~----~~--~l~~~~~~-------~-------~~~~l~~~~r~L----kpGG~lii~ 268 (284)
||.|+. ++ ++..-++- + ...+|+++.+.+ ||||+++.+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 999983 22 23322211 1 356899999999 999999986
No 252
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0017 Score=56.99 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHc---CC--------------------CCCCCCCC--
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---AP--------------------ENHMAPDM-- 210 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~---~~--------------------~~~~~~~~-- 210 (284)
....+||--|||.|+++..++..++. +-|=+.|--|+=...-.+ .. ..+....+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45678999999999999999988886 777788887765432211 00 00100000
Q ss_pred -------CcceeE--EEcCCCCCCC---CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 211 -------HKATNF--FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 211 -------~~~~~~--~~~d~~~~~~---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....| ..+|+.+.-. ..++||+|+.++.+.... +...++..+...|||||+.+-.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000111 2245444321 234799999998877644 7889999999999999988764
No 253
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.23 E-value=0.0014 Score=57.84 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCC-----CCCCCCc
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQD-----FTPETGR 230 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~-----~~~~~~~ 230 (284)
..++||||||...+-.-|..+.+. +++|+|+++..++.|++++..+ ++ ..+|+++...-.. ...+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 568999999988664434443222 7999999999999999999875 44 4567776552211 1123458
Q ss_pred eeEEEecchhccCC
Q 023288 231 YDVIWVQWCIGHLT 244 (284)
Q Consensus 231 fD~Iv~~~~l~~~~ 244 (284)
||+..|+..|+.-.
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999988755
No 254
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.20 E-value=0.0019 Score=55.56 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=68.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCc-ee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-YD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~-fD 232 (284)
...+||++|+|+|..+..++.....+|+..|+... ++..+.+....+......+..+.....+..+.+ .-... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45679999999998888666545557888886544 333333322222211111223444444443322 11123 99
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+++.++.+-. ....++..++..|..+|.+++.-
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence 999999987755 55688888999999999666653
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0068 Score=50.16 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=76.4
Q ss_pred HHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
+...+...+..++.+||=+|+-+|....++..--.. .+++|++|+.+....-..+.. ..|+--+..|+..-
T Consensus 65 Il~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~DA~~P 136 (231)
T COG1889 65 ILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILEDARKP 136 (231)
T ss_pred HHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecccCCc
Confidence 333444455788999999999999998888754332 699999999887665555444 35566667777542
Q ss_pred C---CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 225 T---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 225 ~---~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. .--+..|+|+.--+ .+.+..-+..++...||+||.++++
T Consensus 137 ~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 137 EKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred HHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 1 11246888886433 1224556788999999999976664
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.16 E-value=0.00077 Score=52.78 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEEecchhccCChhh---------HHH
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDD---------FVS 250 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~---------~~~ 250 (284)
+|+++|+-+..++.+++++...+. ..+++++..+=+.+. .+.+++|+|+.+.. |+|..| -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 489999999999999999987665 347889888666553 22258999987643 443322 567
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 023288 251 FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 251 ~l~~~~r~LkpGG~lii~ 268 (284)
+++.+.++|+|||.+.++
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 899999999999999886
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0069 Score=50.78 Aligned_cols=78 Identities=17% Similarity=-0.009 Sum_probs=62.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.++.||||-.|++..++...+.. .+++.|++++-++.|.+++...++ ...++..++|....--.+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence 4456999999999999999987766 899999999999999999998776 4677788887633222234799998
Q ss_pred ecch
Q 023288 236 VQWC 239 (284)
Q Consensus 236 ~~~~ 239 (284)
..++
T Consensus 91 IAGM 94 (226)
T COG2384 91 IAGM 94 (226)
T ss_pred EeCC
Confidence 7654
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.96 E-value=0.0037 Score=55.56 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (284)
..++..++|.-||.|..+..++.... .+|+|+|.++.+++.+++++... ..++.++.+++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45778999999999999999997643 47999999999999999987542 246888888877653 123
Q ss_pred CceeEEEec
Q 023288 229 GRYDVIWVQ 237 (284)
Q Consensus 229 ~~fD~Iv~~ 237 (284)
.++|.|++.
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 468888844
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.96 E-value=0.0021 Score=55.01 Aligned_cols=84 Identities=13% Similarity=0.026 Sum_probs=58.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..+.+|+|||||.--++..+...... .++|+|++..+++......... ....++...|+..-++ ....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~-~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPP-KEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHT-TSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCC-CCCcchh
Confidence 45789999999999999877643322 7999999999999998876543 2456777778776543 3589999
Q ss_pred EecchhccCChhh
Q 023288 235 WVQWCIGHLTDDD 247 (284)
Q Consensus 235 v~~~~l~~~~~~~ 247 (284)
+..=+++.+....
T Consensus 176 LllK~lp~le~q~ 188 (251)
T PF07091_consen 176 LLLKTLPCLERQR 188 (251)
T ss_dssp EEET-HHHHHHHS
T ss_pred hHHHHHHHHHHHh
Confidence 9887777665443
No 260
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.0062 Score=49.74 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCC------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------ 225 (284)
..++.+|||+||.+|.++.-..++- +. .|.|||+-+ +.. ...++++++ |+++..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 3578899999999999999554443 22 699999732 111 233555555 665531
Q ss_pred --CCCCceeEEEecchhccC--Chhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 --PETGRYDVIWVQWCIGHL--TDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~--~~~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++...|+|++-..-... ..-| ...++.-....++|+|.|++.-.
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 455689999975432111 1111 22334444567789999999643
No 261
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.94 E-value=0.0084 Score=52.76 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEEec
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Iv~~ 237 (284)
+++|+-||.|.++..+...++..+.++|+++..++..+.++... .++.|+.++... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999888778888999999999999999887531 445666665432 3579999966
Q ss_pred chhccCCh--------hhHHHH---HHHHHhcCCCCcEEEEEeccCC
Q 023288 238 WCIGHLTD--------DDFVSF---FKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 238 ~~l~~~~~--------~~~~~~---l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.....++. +....+ +-++.+.++|. +++.||+..
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g 114 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG 114 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc
Confidence 54332221 111112 22344445665 778899754
No 262
>PHA01634 hypothetical protein
Probab=96.93 E-value=0.0032 Score=48.10 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~ 203 (284)
.+.+|+|||++.|..+.+++-++...|+++++++...+..+++.+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 56799999999999999999999999999999999999999987653
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0021 Score=58.84 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~ 236 (284)
...|||||+|||.++....+.+...|++++.=..|.+.|++....+|. ..++.++.---++.... ..+.|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence 346999999999999977777888999999999999999999988776 35666665544443322 124676665
Q ss_pred cchhccCChhhHHHHHHHHHhcCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLK 260 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~Lk 260 (284)
..+...+.-+.....++++++.|-
T Consensus 142 e~fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhc
Confidence 444333322223345566665553
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.81 E-value=0.0029 Score=52.31 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=66.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCC-CCCCCCcceeEEEcCCCCCC---CCCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFT---PETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~-~~~~~~~~~~~~~~d~~~~~---~~~~~f 231 (284)
+...+.|||||.|.+...|...++. -+.|.+|--..-+..++++..... .......|+.....+...+. ++.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4567999999999999988855555 688999888877777776543211 01111345555555443332 222222
Q ss_pred eEEEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-++..+.=-|+... --..++.+..=+|++||.++..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 222222221222110 0235788889999999998875
No 265
>PRK10742 putative methyltransferase; Provisional
Probab=96.69 E-value=0.0035 Score=53.82 Aligned_cols=112 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCc--eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCC--CCcceeEEEcCCCCCC-CCCC
Q 023288 156 NQHL--VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APD--MHKATNFFCVPLQDFT-PETG 229 (284)
Q Consensus 156 ~~~~--~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~--~~~~~~~~~~d~~~~~-~~~~ 229 (284)
+++. +|||+-+|+|..+..++..++. |+++|-++.+....++.+...... ... ...+++++..|..++- -...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 3444 8999999999999999988887 999999999988888776542110 000 1246788888876653 1124
Q ss_pred ceeEEEecchhccCC------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLT------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~------------------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+||+|++--.+.|-. +.+-..+|..+.++-+ -++++.+.
T Consensus 164 ~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp 220 (250)
T PRK10742 164 RPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRP 220 (250)
T ss_pred CCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecC
Confidence 799999654443311 1223456666666554 56666654
No 266
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.64 E-value=0.0073 Score=55.39 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCCCCceeEEEecchhccCCh------------------------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 225 TPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 225 ~~~~~~fD~Iv~~~~l~~~~~------------------------------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+|.++.+++++++++|+++. .|+..+|+.=++-|.|||.++++
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 477889999999999999972 13455666667789999999998
Q ss_pred ecc
Q 023288 269 ENI 271 (284)
Q Consensus 269 e~~ 271 (284)
=..
T Consensus 237 ~~G 239 (386)
T PLN02668 237 CLG 239 (386)
T ss_pred Eec
Confidence 543
No 267
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.56 E-value=0.0098 Score=51.60 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHcCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
.+.+|+|+|+|+|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 458999999999999999987322 1799999999999999998876
No 268
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.04 Score=47.12 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHc-CCCCCCCCCCCcceeEEEcCCCC----CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQD----FT 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~ar~~~-~~~~~~~~~~~~~~~~~~~d~~~----~~ 225 (284)
..+...+|+|+|+-.-++.++..... +++.+|+|...++...+.+ .... ...+.-+++|.+. ++
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP 150 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc
Confidence 34678999999999988877764332 8999999999988654433 2211 2234455566543 22
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE-eccCCCC
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARSG 275 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~-e~~~~~~ 275 (284)
..++==.++...++.++++++...++..+...|+||-++++. |.+.+.+
T Consensus 151 -~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae 200 (321)
T COG4301 151 -RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAE 200 (321)
T ss_pred -CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHH
Confidence 223334455667899999999999999999999999999885 5554433
No 269
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.36 E-value=0.013 Score=53.67 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=78.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
.++++.||||..+-.|.=+.+++.-.-. .|++.|.+..-+...+.++...|. .+......|..+++ ++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~- 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP- 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-
Confidence 3788999999999999988877764333 699999999999999998877663 34445566776664 34
Q ss_pred CceeEEE----ecc--hhc------cCC-hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIW----VQW--CIG------HLT-DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv----~~~--~l~------~~~-~~-------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++||-|. |+. ++. ... .. -..++|..+..+++|||+|+.+.
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 3899998 333 110 000 00 13467888889999999999874
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.34 E-value=0.013 Score=53.05 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=60.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-----------CC---C---cEEEEeCCHH-HHHHHHH------HcCCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-----------YF---N---EVDLLEPVSH-FLDAARE------SLAPENHMAPDM 210 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-----------~~---~---~v~gvD~S~~-~l~~ar~------~~~~~~~~~~~~ 210 (284)
.....+|+|+||..|..+..+... .. . +|..-|.-.. +-...+. ......
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~------ 87 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR------ 87 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT------
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc------
Confidence 456789999999999998866551 11 1 5777774322 1111111 000000
Q ss_pred CcceeEEEcCCCCCCCCCCceeEEEecchhccCCh-------------------------------------hhHHHHHH
Q 023288 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFK 253 (284)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~-------------------------------------~~~~~~l~ 253 (284)
..-+..+.+.+-.=-+|+++.|++++++++||++. .|+..+|+
T Consensus 88 ~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 88 NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11122333455544577899999999999999852 13455666
Q ss_pred HHHhcCCCCcEEEEEecc
Q 023288 254 RAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 254 ~~~r~LkpGG~lii~e~~ 271 (284)
.=++-|+|||.+++.=..
T Consensus 168 ~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 168 ARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHEEEEEEEEEEEEE
T ss_pred HhhheeccCcEEEEEEee
Confidence 666788999999997443
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.28 E-value=0.0018 Score=48.26 Aligned_cols=38 Identities=39% Similarity=0.713 Sum_probs=30.1
Q ss_pred ceeEEEecchhc--cC--ChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 230 RYDVIWVQWCIG--HL--TDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 230 ~fD~Iv~~~~l~--~~--~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.||+|+|-.+.. |+ .|+.+..+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 489999877654 33 455689999999999999999988
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.25 E-value=0.032 Score=50.29 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=67.9
Q ss_pred cCCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCCCCCCCCce
Q 023288 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (284)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~f 231 (284)
...++.+|+=+|+| -|..+..+++....+|+++|.|++-++.|++.-.. .++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd------------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD------------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc------------EEEEcCCchhhHHhHhhC
Confidence 45678888888887 55677878875557899999999999999987544 122222 11111111249
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+..-. . ..+....+.||+||++++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987555 2 4566777889999999998665
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.029 Score=44.13 Aligned_cols=95 Identities=20% Similarity=0.074 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~ 215 (284)
....+.++..+. ++. .++..+.+|+|+|.|++-...++.+...-+|++++|-.+..+|-+.-..|. .....
T Consensus 55 pAtteQv~nVLS-ll~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr 125 (199)
T KOG4058|consen 55 PATTEQVENVLS-LLR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR 125 (199)
T ss_pred CccHHHHHHHHH-Hcc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence 334444555433 333 456689999999999998877766645689999999999998877655444 34566
Q ss_pred EEEcCCCCCCCCCCceeEEEecch
Q 023288 216 FFCVPLQDFTPETGRYDVIWVQWC 239 (284)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Iv~~~~ 239 (284)
|..-|+-.+...+-.+-+|+....
T Consensus 126 f~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 126 FRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred hhhhhhhhccccccceEEEeehHH
Confidence 777777666655434444544433
No 274
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.026 Score=52.34 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCCceEEEeeccccHHHHH--HHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKN--LLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~--l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..+..++|+|.|.|.-... .+.+. ...++.||.|..|+.............+.....+..|...- +| .....|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~---~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR---LPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc---CCCCcccce
Confidence 4566788998887754432 22232 33799999999999999888766221111111111122111 12 223469
Q ss_pred eEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
|+|++.+.+++++... ....-.-..+..++||.+++.|...+.++
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 9999999999986443 22233445567899999999998777665
No 275
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.14 E-value=0.013 Score=51.20 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=79.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
...+.+||-||.|.|...+..... .+.++..+|+....++..++.+.... .....+++....+|-..+- ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCCc
Confidence 456789999999999998877644 22289999999999999888775421 1223567778888765442 335799
Q ss_pred eEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+.-..=.-.+... ...++.-+.+.|||||++++..
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999543311122111 4578888999999999999874
No 276
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.06 E-value=0.0034 Score=54.57 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-HcCCC---CCCCCCCCcceeEEEcCCCCCCC-CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE-SLAPE---NHMAPDMHKATNFFCVPLQDFTP-ETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~-~~~~~---~~~~~~~~~~~~~~~~d~~~~~~-~~~ 229 (284)
...+.+|||+|||.|.........+...+...|+|...++.-.- +.... +........-.......+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 45678999999999999987776665679999999888742110 00000 00000001111122221112221 112
Q ss_pred --ceeEEEecchhccCChhhHHHH-HHHHHhcCCCCcEEEEE
Q 023288 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 --~fD~Iv~~~~l~~~~~~~~~~~-l~~~~r~LkpGG~lii~ 268 (284)
.||+|.++.++...+ ....+ ......+++++|.++++
T Consensus 194 ~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999998877665 33344 66677888999988875
No 277
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.026 Score=50.87 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHHcCC
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~---------~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+.+..++.+.+.....+.+..++|||.|+|.++..+++.. ..++..|++|++..+.=+++++.
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3344444444433334567789999999999999888732 22899999999999998888876
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.83 E-value=0.064 Score=45.67 Aligned_cols=106 Identities=17% Similarity=0.017 Sum_probs=66.4
Q ss_pred CCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023288 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (284)
Q Consensus 151 ~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (284)
.+...+++.+||-+|++.|..-..+..-..+ -|++|+.|+..=...-..++. ..|+--+.-|+....
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYR 221 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchhee
Confidence 3455778999999999999987766543222 699999987643332222222 245555555665421
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..-+-.|+|++.-. .++....+.-++.-.||+||.|+++
T Consensus 222 mlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 12235677775433 1223445566788899999999987
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.64 E-value=0.13 Score=49.09 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC----------
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (284)
..++.+|+=+||| .|..+...++.....|+++|.+++-++.+++.-.. +...+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~-------------~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE-------------FLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-------------EEEeccccccccccchhh
Confidence 4578999999999 57777777766555899999999999999874221 11111100
Q ss_pred -CC----------CCC--CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 224 -FT----------PET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 224 -~~----------~~~--~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+. +.+ ..+|+||..-....-+.+ ..+.+++.+.+||||.++..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEE
Confidence 00 011 369999976654332211 13359999999999998876
No 280
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.52 E-value=0.088 Score=46.40 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
+.++...+|.--|.|..+..++..+.. +++|+|-.+.+++.|+++.... ..++.++..++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 567789999999999999999998764 6999999999999999998653 346788888766543 22
Q ss_pred CCceeEEE
Q 023288 228 TGRYDVIW 235 (284)
Q Consensus 228 ~~~fD~Iv 235 (284)
.+++|.|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34677776
No 281
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.48 E-value=0.04 Score=48.94 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=65.8
Q ss_pred cCCCCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCCC-----
Q 023288 154 RNNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDF----- 224 (284)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~~----- 224 (284)
..+.+.+||=+|+| .|..+...++. +..+|+.+|+++.-++.|++ +.... +..... +..++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELVE 235 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHHH
Confidence 36788999999999 56666655554 44599999999999999999 43311 111111 01111
Q ss_pred -CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 225 -~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
......+|+.|.+..++ ..++.....+|+||.++++..
T Consensus 236 ~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred hhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEecc
Confidence 12223588888665543 566667788999999888865
No 282
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.38 E-value=0.049 Score=48.51 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C-C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 227 (284)
+.++...+|.--|.|..+..+++.... +++|+|-.+.+++.|++++... ..++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 567789999999999999999987554 8999999999999999988753 356888888877653 2 3
Q ss_pred CCceeEEEe
Q 023288 228 TGRYDVIWV 236 (284)
Q Consensus 228 ~~~fD~Iv~ 236 (284)
...+|.|++
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
No 283
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.051 Score=51.22 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHh---CCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcce
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~---~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~ 214 (284)
..+...+..+.+....+....|+=+|+|-|-+....++. ... ++++|+-+|..+-....+.-. .. ..++
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-~W-----~~~V 423 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-CW-----DNRV 423 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-hh-----cCee
Confidence 333333433433322233567899999999877655542 122 699999999988766553211 11 4579
Q ss_pred eEEEcCCCCCCCCCCceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEE
Q 023288 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii 267 (284)
+++..|+..+..+....|++++- .|.-|.+.+ =.+.|.-+.+.|||+|+.+=
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred EEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 99999999998665789998853 233333333 24678889999999987654
No 284
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.31 E-value=0.096 Score=47.32 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=74.4
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC--C-ceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~-~fD~I 234 (284)
..+++|+=||.|.+..-+...++.-+.++|+++..++.-+.++.. ..+...|+..+..+. . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 458999999999999988888888899999999999999988763 335556666544221 1 78999
Q ss_pred EecchhccCChh-------h----HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 235 WVQWCIGHLTDD-------D----FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 235 v~~~~l~~~~~~-------~----~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+.......++.. | +.--+.++...++| .+++.||+.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 976655544321 1 23445666677888 788889975
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.31 E-value=0.078 Score=48.82 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-C----CCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~----~~~~~~ 227 (284)
..++.+||.+|||. |..+..+++.... +++++|.++.+++.+++.... ..+.+...+ + .++ ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHH-cC
Confidence 45678999999998 8888888877664 599999999999999876321 011111111 1 111 12
Q ss_pred CCceeEEEecchh-------cc----C--ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCI-------GH----L--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l-------~~----~--~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+-+-.- ++ . +..+....+.++.+.|+|+|.+++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2368988864311 11 1 00122467889999999999998874
No 286
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.30 E-value=0.027 Score=51.83 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.+.+|||.=+|+|.=+..++.. +..+|+.-|+|+..++..++++..+++.. ..++..+.|+..+- .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHHHhhhccccCCE
Confidence 4579999999999888878776 34589999999999999999987766521 14677777776543 23468999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|=.-.. . ....++..+.+.++.||.|.++-
T Consensus 125 IDlDPf----G--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDPF----G--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE--S----S----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC----C--CccHhHHHHHHHhhcCCEEEEec
Confidence 864322 2 33479999999999999999974
No 287
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.23 E-value=0.055 Score=45.26 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=54.2
Q ss_pred CCceEEEeeccccHHHHHHHH---hC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----C-
Q 023288 157 QHLVALDCGSGIGRITKNLLI---RY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~- 226 (284)
++..|+|+|.-.|..+..++. .. ..+|+|+|+......... .+...+ ..+++++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~-----~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPM-----SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhccc-----cCceEEEECCCCCHHHHHHHH
Confidence 567999999999988886654 22 238999999543332211 111111 367999999877642 1
Q ss_pred ---CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
......+|+. .+ +|.. +...+.|+....+++||+++++-|.
T Consensus 105 ~~~~~~~~vlVil-Ds-~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 105 ELASPPHPVLVIL-DS-SHTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HhhccCCceEEEE-CC-CccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 1123344443 22 2222 2556788889999999999999764
No 288
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.17 E-value=0.034 Score=41.30 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
..++..+...... ..+.....|||||+|.+.--|...++. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3444444443332 245668999999999999877777776 788885
No 289
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.15 E-value=0.12 Score=46.73 Aligned_cols=97 Identities=21% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+||=+||| .|..+..+++... .+|+++|.+++-++.+++.-... -++....++.+.....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK---------LVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE---------EecCCcccHHHHhccCCCCCE
Confidence 357789888876 4556666665543 36999999999999988742210 011111122221111235898
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+-.-. . . ..+..+.+.|+|||.+++.-
T Consensus 239 vid~~G-----~-~--~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSG-----H-P--SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCC-----C-H--HHHHHHHHHhhcCCEEEEEc
Confidence 885432 1 1 46677888999999999874
No 290
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.12 E-value=0.26 Score=47.07 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=68.9
Q ss_pred CCCceEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 225 (284)
.+..+|+|-.||+|.+.....+. .. ..++|.|+++.....|+.+.--.+... .+....+|-..-+
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCccccc
Confidence 45569999999999876654432 11 358999999999999998876554321 1222223222111
Q ss_pred CCCCceeEEEecchhc---cC-------------------Ch-hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIG---HL-------------------TD-DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~---~~-------------------~~-~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
...+.||.|+++..+. +. +. ..-..+++.+...|+|||+..|.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 1336799999775442 10 00 01267999999999999865554
No 291
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.04 E-value=0.29 Score=41.93 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~I 234 (284)
.+.+||=+|=..-......+...+.+|+.+|+.+.+++..++.+...|+ .++.+..|+.+--++ .++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCEE
Confidence 5689999996654433323334455999999999999999988776543 388888898763222 3799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCc-EEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG-~lii~ 268 (284)
++...-. .+-+.-++.+....||.-| ..+++
T Consensus 117 ~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 117 FTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp EE---SS---HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9875521 2457789999999999766 44443
No 292
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.79 E-value=0.039 Score=47.08 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=45.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~---~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
.+|||.-||-|.-+.-++.-++ +|++++-||.+-...+. ++............+++++.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997775555 59999999987554442 22111110011124789999998875 3456799999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
++-.+|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 97766654
No 293
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.78 E-value=0.1 Score=44.27 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----CCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 229 (284)
.++.++||||.|.-.+-.-+--+.+ -+.+|.|+++..++.|+..+..+ ......++.....-.+ ..-.++
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcC----cchhhheeEEeccCccccccccccccc
Confidence 4677999999997655442222222 27999999999999999988764 1113334444332111 112256
Q ss_pred ceeEEEecchhcc
Q 023288 230 RYDVIWVQWCIGH 242 (284)
Q Consensus 230 ~fD~Iv~~~~l~~ 242 (284)
.||++.|+..||.
T Consensus 153 ~yd~tlCNPPFh~ 165 (292)
T COG3129 153 RYDATLCNPPFHD 165 (292)
T ss_pred eeeeEecCCCcch
Confidence 8999999999885
No 294
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.66 E-value=0.13 Score=45.63 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCceEEEeeccccHHHHHHHHhC-------C--------------CcEEEEeCCHH--HHHHHHHHcCCC----------
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPE---------- 203 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-------~--------------~~v~gvD~S~~--~l~~ar~~~~~~---------- 203 (284)
+..+||-||.|.|.-...++.-. . -.++.||+.+- .++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987665555432 0 06999998864 455555544433
Q ss_pred CC-CCCCCCcceeEEEcCCCCCCCCC-------CceeEEEecchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 204 NH-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 204 ~~-~~~~~~~~~~~~~~d~~~~~~~~-------~~fD~Iv~~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.. ....-.-++.|.+.|+..+..++ ...|+|...+++..+ ....-.++|.++...++||-.|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 11122346889999988765321 246888877766543 222467899999999999999999986
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.59 E-value=0.38 Score=43.84 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=64.4
Q ss_pred CCceEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCC-C-CCCCC-Cc
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQ-D-FTPET-GR 230 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~~-~~ 230 (284)
++.+|+=+||| .|.++..+++.. ..+|+.+|.++.-++.|++....... ..... +.. . ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCC
Confidence 34489999999 577777666553 45899999999999999986543110 00000 000 0 01111 26
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|+|+-+.. . . ..+..+.++++|||.+++.-..
T Consensus 239 ~D~vie~~G---~---~--~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---S---P--PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---C---H--HHHHHHHHHhcCCCEEEEEecc
Confidence 999985444 1 2 5888999999999999997443
No 296
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.51 E-value=0.024 Score=49.70 Aligned_cols=107 Identities=21% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCceEEEeeccccHHHH-HHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~-~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+..|.|+=+|.|+++. .+...+...|.++|.+|..++..++.+..++. ..+.....+|-. .+.+....|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R-~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNR-NPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhcccc-ccCccccchhee
Confidence 45789999999999999 66767888999999999999999998876432 122223333432 233446778777
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCC-Cc-EEEEEeccCCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARSG 275 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~Lkp-GG-~lii~e~~~~~~ 275 (284)
.... |..+ +---.+.++||| || .+-|-||+..++
T Consensus 268 LGLl----PSse--~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 268 LGLL----PSSE--QGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred eccc----cccc--cchHHHHHHhhhcCCcEEEEeccccccc
Confidence 5433 2111 233334556676 44 666778876554
No 297
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.49 E-value=0.55 Score=40.94 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=69.1
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-------CCCCC
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-------TPETG 229 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-------~~~~~ 229 (284)
...|+.+|||-=.-...+.......++=+|. |++++.-++.+...+. ....+..++..|+.+ + .+..+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3469999999755544442111113555553 4456655555554221 113456778888752 1 12223
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.--++++-.++.|++.++...+++.+.+...||+.+++-
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455788889999999999999999999998899988874
No 298
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.48 E-value=0.33 Score=38.92 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=65.5
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHH-HHHHHcCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~-~ar~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Iv 235 (284)
+.+++-+|...=..-...+..+..++..|+.++--++ ..+.+.. ++...|+. ++.--.++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 3567778888666666556677778888887641111 0111111 01111111 1111236899999
Q ss_pred ecchhccCCh---------hhHHHHHHHHHhcCCCCcEEEEEeccCCCCccc
Q 023288 236 VQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278 (284)
Q Consensus 236 ~~~~l~~~~~---------~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~ 278 (284)
|..+++|+.- ..-...+.++.++|||||.++++-.+.++...+
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~f 120 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQF 120 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEE
Confidence 9999988721 113467889999999999999987766655443
No 299
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.10 E-value=0.077 Score=48.82 Aligned_cols=58 Identities=7% Similarity=0.180 Sum_probs=51.8
Q ss_pred cceeEEEcCCCCCC--CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 212 ~~~~~~~~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+++++..++.+.. .+++++|.++....+.+++++++.+.++++.+.++|||++++--
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 56889999888763 45789999999999999999999999999999999999999963
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.94 E-value=0.65 Score=41.31 Aligned_cols=93 Identities=24% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------CCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 227 (284)
..++.+||..||| .|..+..+++....+|++++.++...+.+++.-.. .+...-... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD-------------EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------------EEEcCCCcCHHHHHHHhc
Confidence 4567788888876 47788878876555799999999999988653211 111111100 122
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+.+|+|+.+... ...+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988854321 15778889999999999875
No 301
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.86 E-value=0.1 Score=46.49 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=65.4
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEEEe
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~Iv~ 236 (284)
+++|+=||.|.++..+...++..+.++|+++...+.-+.++. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 699999999999999988888889999999999999998863 46677887764 332 5999996
Q ss_pred cchhccCCh---------hh--HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTD---------DD--FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~---------~~--~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.....-++. +. +-.-+-++.+.++| .+++.||+.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccc
Confidence 544333221 11 33334444556688 456669874
No 302
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.86 E-value=0.2 Score=44.92 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred EEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEecch
Q 023288 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC 239 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~ 239 (284)
|+|+=||.|.++.-+...++.-+.++|+++...+..+.++.. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 589999999999988878887778899999999999888743 1234566555321 125899885543
Q ss_pred hccCC--------hhhHHHHHH---HHHhcCCCCcEEEEEeccC
Q 023288 240 IGHLT--------DDDFVSFFK---RAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 240 l~~~~--------~~~~~~~l~---~~~r~LkpGG~lii~e~~~ 272 (284)
...++ .+....++. ++.+.++|. +++.||+.
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccH
Confidence 33222 011122333 334445774 78889975
No 303
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.86 E-value=0.33 Score=40.79 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHcCCC----------------------------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE---------------------------- 203 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---~~v~gvD~S~~~l~~ar~~~~~~---------------------------- 203 (284)
...+.++.|--||.|++.--+.--+. ..|.+.|+++.+++.|++++.-.
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45678999999999998764433222 28999999999999999876320
Q ss_pred --------CCCCCCCCcceeEEEcCCCCCC-----CCCCceeEEEecchhccCC-------hhhHHHHHHHHHhcCCCCc
Q 023288 204 --------NHMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 204 --------~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Iv~~~~l~~~~-------~~~~~~~l~~~~r~LkpGG 263 (284)
.+............+.|+.+.. ......|+|+.-....+++ ..-...+|..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 0000000122456777777632 1122469998654444332 2236789999999996566
Q ss_pred EEEEEec
Q 023288 264 FFVLKEN 270 (284)
Q Consensus 264 ~lii~e~ 270 (284)
++.+++.
T Consensus 209 VV~v~~k 215 (246)
T PF11599_consen 209 VVAVSDK 215 (246)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 6666543
No 304
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.63 E-value=0.29 Score=37.23 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=59.2
Q ss_pred cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-----C-CCCCceeEEEecchh
Q 023288 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (284)
Q Consensus 167 GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~Iv~~~~l 240 (284)
|.|.++..+++....+|+++|.++.-++.+++.-.. .++..+-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887668899999999999999875322 1111111111 0 122479999855331
Q ss_pred ccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 241 ~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
. ..++....+|+|||.+++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 2 68888999999999999986544
No 305
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.49 E-value=0.53 Score=42.54 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=58.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..++.+||=+||| .|.++..+++. +..+|+++|.++.-++.+++ +.. .....++. +...+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------------~~~~~~~~----~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------------TYLIDDIP----EDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------------eeehhhhh----hccCC
Confidence 3567899999987 44455555654 24479999999988888865 211 01001111 11248
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+-.-. . ......+....++|++||++++.-
T Consensus 224 d~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 98884322 1 011257888889999999998764
No 306
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.47 E-value=0.89 Score=43.08 Aligned_cols=45 Identities=18% Similarity=0.010 Sum_probs=39.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
...+++|+=||.|.+...+-..++..|.++|+++...+.-+.++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 467999999999999998887788778999999999988888763
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=93.44 E-value=0.32 Score=42.93 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+...+..++... ..++..|||.=||+|..+.. +.+...+.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345566655432 45889999999999999884 446566799999999999999999754
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.34 E-value=0.19 Score=41.36 Aligned_cols=103 Identities=14% Similarity=0.007 Sum_probs=70.0
Q ss_pred CCCceEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 225 (284)
.++..|+|+|.-.|..+..++.. .. .+|.++|++-..++.+... .+.+.|+.++-.+..
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHH
Confidence 35678999999999988877763 22 2799999997776655433 245889998876643
Q ss_pred --CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..++.--+.++-.+-|++. ...+.++-..++|.-|-++++-|..
T Consensus 137 ~~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred HHHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccc
Confidence 1222223333445656544 5557788888999999999887654
No 309
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.27 E-value=0.32 Score=40.73 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
.-+...+..++... ..++..|||.=||+|..+.... ....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 34456666666543 3578899999999999998555 555579999999999999874
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.12 E-value=0.38 Score=46.00 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=62.7
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----------
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----------- 223 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~----------- 223 (284)
.++.+|+=+|||. |..+..++......|+++|.++.-++.+++. .. +++..+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga------------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA------------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEeccccccccccccceee
Confidence 4578999999994 5666666666555799999999988888763 21 111111100
Q ss_pred ------------CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 224 ------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 224 ------------~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+.-.-..+|+||..-.+..-+.+ .-+.+++.+.+|||+.++-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 11012469999876655443322 2467888999999998663
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.05 E-value=0.27 Score=44.73 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
...-..|+|+|.|.|.++..+.-.+.-.|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34566899999999999997665555589999999888777764
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.95 E-value=1.2 Score=40.02 Aligned_cols=92 Identities=13% Similarity=-0.064 Sum_probs=59.1
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.+++.+||=.|+| .|..+..+++....+|++++.++.-++.+++.-... .+ +..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------------vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------------AG--GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------------ec--ccccc--CcccceE
Confidence 5577899999975 455556566554446999999999888887753221 11 11111 1235787
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..... + ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~~---~-----~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA---G-----GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc---H-----HHHHHHHHhhCCCcEEEEEec
Confidence 6543321 1 467788899999999988654
No 313
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.52 E-value=0.25 Score=41.84 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEEeeccccHHHHHHHHhCCC----------cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~----------~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (284)
.+++|+-+..|.++..+.++.+. .+++||+-+ |. . -..+.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------P---------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------P---------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------c---------cCceEEeecccCCHhHHH
Confidence 57999999999999877664332 289999743 11 1 234667788887643
Q ss_pred -----CCCCceeEEEecch-----hccCC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023288 226 -----PETGRYDVIWVQWC-----IGHLT----DDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 226 -----~~~~~fD~Iv~~~~-----l~~~~----~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+...+.|+|+|-+. +|.+. .+-+.++|+-...+|||||.|+-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 44568999998754 34332 11255677777899999999875
No 314
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.42 E-value=0.69 Score=41.38 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++.... .-+.....++..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~---------~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD---------ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC---------EEEcCCchhhhhhhccCCCccEE
Confidence 678888888875 6677767765443 699999999988876653211 00111001111222122459999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+... . ..++.+.+.|+++|.++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 4567888999999999875
No 315
>PRK11524 putative methyltransferase; Provisional
Probab=92.33 E-value=0.15 Score=45.07 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.8
Q ss_pred ceeEEEcCCCCC--CCCCCceeEEEecchhcc------C----Chh----hHHHHHHHHHhcCCCCcEEEEE
Q 023288 213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 213 ~~~~~~~d~~~~--~~~~~~fD~Iv~~~~l~~------~----~~~----~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..++++|..++ .+++++||+|++.-.+.- . ..+ -+..++.++.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356778887764 355679999998644311 0 001 1357899999999999999885
No 316
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.31 E-value=0.53 Score=40.16 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCcee
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 232 (284)
.++.+||..|+|. |..+..+++....+|++++.++...+.+++..... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 5678999999995 77777777666668999999998888876542110 00000000000 0 01235699
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+.+..- . ..+..+.+.|+++|.++..-.
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356677888999999987643
No 317
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.21 E-value=0.46 Score=43.07 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv 235 (284)
+.+|||-=+|+|.=++.++..... +|+.-|+||..++.+++++..+. ..+...+..|...+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence 578999999999888877766544 79999999999999999987641 12344444565544322 35788774
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.-- +. ....++..+.+.++.||.+.++-
T Consensus 127 iDP----FG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 IDP----FG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cCC----CC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 322 22 23378888999999999999974
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.20 E-value=0.98 Score=40.90 Aligned_cols=96 Identities=25% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~---S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
.++.+||=+||| .|.++..+++....+|++++. ++.-++.+++.-.. .+.....+..+ ....+.|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----------~v~~~~~~~~~-~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT----------YVNSSKTPVAE-VKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE----------EecCCccchhh-hhhcCCC
Confidence 467789999987 466667676655447999986 67777777653211 01111111111 0112468
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|+-.-. . . ..+..+.+.|++||.+++.-.
T Consensus 240 d~vid~~g-----~-~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG-----V-P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC-----C-H--HHHHHHHHHccCCcEEEEEec
Confidence 98886543 1 1 367788899999999987644
No 319
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.88 E-value=1.2 Score=40.53 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=70.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (284)
..++.+|||+-+-.|.-+..+++.... .|++=|.++.-+...+........ .+..+...++..++
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~------~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS------PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC------cceeeecccceecccccc
Confidence 678999999999999999988876442 589999999877777666643221 22233333333322
Q ss_pred -----CCCCceeEEEec-----c-hhccCCh---------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -----PETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -----~~~~~fD~Iv~~-----~-~l~~~~~---------------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....||-|.+- . ++.+.++ .-...++.+..++||+||.++.+.
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 122368888732 1 1111110 012457889999999999999873
No 320
>PTZ00357 methyltransferase; Provisional
Probab=91.84 E-value=0.7 Score=45.34 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=63.2
Q ss_pred ceEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHcCCCCCC-C--CCCCcceeEEEcCCCCCCCCC--
Q 023288 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM-A--PDMHKATNFFCVPLQDFTPET-- 228 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~ar~~~~~~~~~-~--~~~~~~~~~~~~d~~~~~~~~-- 228 (284)
..|+=+|+|-|-+....++. +.. +|++|+-++..+.....+......+ + ...+..++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999876665542 222 7999999966544444443221111 1 112345899999999985331
Q ss_pred ---------CceeEEEecchhccCChhh-HHHHHHHHHhcCCC----CcE
Q 023288 229 ---------GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKP----GGF 264 (284)
Q Consensus 229 ---------~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~Lkp----GG~ 264 (284)
+.+|+||+- .|.-|.+.+ -.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999963 222233222 23456666667765 775
No 321
>PRK13699 putative methylase; Provisional
Probab=91.53 E-value=0.89 Score=38.80 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+...+..++... ..++..|||.=||+|..+.... +...+++|+|+++...+.+.+++..
T Consensus 149 P~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345555555422 3478899999999999998655 4445699999999999999888754
No 322
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.36 E-value=0.98 Score=40.96 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... .-++.... ++.+ . ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 457789999987 4788888888765557999999998888876443321 11111100 1110 0 01123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898885332 2 46677888999999998763
No 323
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.30 E-value=1.3 Score=41.37 Aligned_cols=88 Identities=14% Similarity=-0.030 Sum_probs=56.0
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-++.+|+=+|||. |......++....+|+++|.++.-++.|+..-. +.. ++.+. . ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-------------~~~--~~~e~-v--~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-------------EVM--TMEEA-V--KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-------------EEc--cHHHH-H--cCCCEE
Confidence 3678999999995 555555555444479999999988877765311 111 11111 1 257999
Q ss_pred EecchhccCChhhHHHHHHH-HHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~-~~r~LkpGG~lii~e 269 (284)
+..-. . ...+.. ..+.+|+||.++..-
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 86432 1 134544 488999999998764
No 324
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.18 E-value=1.2 Score=36.09 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=57.3
Q ss_pred eeccccHHHHHHHHhCC-C-cEEEE--eCCHHHHHHHH---HHcCCCCCCCCCCCccee-EEEcCCCCCC----CCCCce
Q 023288 164 CGSGIGRITKNLLIRYF-N-EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGRY 231 (284)
Q Consensus 164 iGcGtG~~s~~l~~~~~-~-~v~gv--D~S~~~l~~ar---~~~~~~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~f 231 (284)
||=|.=.++..|++... . .++++ |......+... +++.... ..++. .+..|++++. ...+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCcC
Confidence 56666677777777644 2 45554 43333333222 2221110 01122 3345666654 245789
Q ss_pred eEEEecchhccC-----------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~-----------~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.|+.++.-..- ...=+..+++.+..+|+++|.+.|+
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999987653220 0112678999999999999999997
No 325
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.03 E-value=2.9 Score=30.99 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEEecc
Q 023288 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (284)
Q Consensus 166 cGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Iv~~~ 238 (284)
||.|..+..+++ .....|+.+|.++..++.+++.. ..++.+|..+.. ..-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 666777776655 33336999999999999887653 457888887643 2234688777654
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ++.....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3 223334555566777888877765
No 326
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.78 E-value=4.4 Score=35.98 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=60.2
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCC--CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~--~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++. ... .-+..... +..+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeccccccHHHHHHHhCCC
Confidence 456788988884 578888888876555799999999988888653 210 00111110 11110 01124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-.-. . ..+..+.+.|++||+++..
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6999885322 1 3457788899999999975
No 327
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.74 E-value=3.7 Score=36.47 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=59.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||-+||| .|..+..+++....+|++++.++..++.+++.... .-+.....+... . ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD---------EVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc---------EEeccCCcchHH-h-ccCCCCE
Confidence 4567789989987 77777777766555799999999998888543211 000000000000 0 1246898
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+.+..- . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS------G--AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc------H--HHHHHHHHhcccCCEEEEEC
Confidence 8854220 1 35677788999999988763
No 328
>PRK13699 putative methylase; Provisional
Probab=89.70 E-value=0.36 Score=41.18 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=33.5
Q ss_pred eEEEcCCCCC--CCCCCceeEEEecchhc----c-----CC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023288 215 NFFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 215 ~~~~~d~~~~--~~~~~~fD~Iv~~~~l~----~-----~~----~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++++|..+. .++++++|+|+..-... . +. .+-+..++.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455555443 35567888888663221 0 00 01245789999999999998876
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.69 E-value=2.2 Score=37.93 Aligned_cols=86 Identities=21% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+||=+||| .|.++..+++... ..|.++|.++..++.+.+... + +..+. ....||+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~------------i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV------------L-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc------------c-----Chhhc--cCCCCCEE
Confidence 45678888876 5667776776544 357788998877776653210 0 10000 12468988
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 205 id~~G~------~--~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGD------P--SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCC------H--HHHHHHHHhhhcCcEEEEEe
Confidence 854331 1 46778888999999999764
No 330
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.63 E-value=3.7 Score=35.41 Aligned_cols=93 Identities=16% Similarity=-0.012 Sum_probs=58.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+||-.|||. |..+..+++....+ |++++.+++..+.+++.-... .-+.. ... . .....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~-~~~---~-~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAAD-TAD---E-IGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------ccccc-chh---h-hcCCCCC
Confidence 45678888888875 66666677665555 999999999888777642110 00000 000 0 1224689
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.+-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88853221 1 3567778889999998865
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.42 E-value=1.1 Score=39.98 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-.+.+|.=||.| .|..+..++.-....|+.+|+|..-+......+.. ++...-.....+...-.+.|+|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEE
Confidence 355678888988 57777777766666899999999888887776643 3555555544443223478999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|..-.+---. ...-..+++...+|||+.++=
T Consensus 236 IgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 9765554444 344678899999999998764
No 332
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.39 E-value=0.36 Score=45.30 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=74.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (284)
..++.+|||.=|++|.-+...+.... .+|++-|.++..++..+++...++. ...++....|+..+- ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence 34678999999999999988887543 3899999999999999988876432 122334444544321 123
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..||+|-.-.. . ....+|..+.+.++.||.++++-
T Consensus 182 ~~FDvIDLDPy----G--s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 182 KFFDVIDLDPY----G--SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cccceEecCCC----C--CccHHHHHHHHHhhcCCEEEEEe
Confidence 58998864322 1 22378899999999999999973
No 333
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.47 E-value=1.8 Score=39.27 Aligned_cols=99 Identities=16% Similarity=-0.020 Sum_probs=59.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C--CCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F--TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~ 229 (284)
..++.+||=.||| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++....+..+ + .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence 4567899988875 35566666665444 599999999999988654211 001111111100 0 01123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|+|+-.-. . . ..+....+.+++||++++.-.
T Consensus 245 g~d~vid~~g-----~-~--~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVG-----R-P--ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCC-----C-H--HHHHHHHHHhccCCEEEEECC
Confidence 5898884322 1 1 456677889999999988643
No 334
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.44 E-value=1.3 Score=43.99 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-------C-----C-cEEEEeCC---HHHHHHHHHH-----------cCC-----C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARES-----------LAP-----E 203 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------~-----~-~v~gvD~S---~~~l~~ar~~-----------~~~-----~ 203 (284)
.+..+|+|+|-|+|......++.. . . +++.+|.- .+.+..+-+. ... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999999766555322 1 1 68888853 3333333221 111 0
Q ss_pred CCCC---CCCCcceeEEEcCCCCCCC-CCCceeEEEecc-hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 204 NHMA---PDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 204 ~~~~---~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv~~~-~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|+.. ..-....++..+|+.+.-. -...||+|+.-. +-...|+-=-..+|+.++++++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1100 0001245566677755321 125699999653 22222211134799999999999999874
No 335
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.44 E-value=1.7 Score=38.90 Aligned_cols=98 Identities=20% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-CCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~ 230 (284)
..++.+||=+|+| .|..+..+++....+ |++++.++.-++.+++.-.. ..++....+...+ . .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD---------FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCCcchHHHHHHHhCCCC
Confidence 4567888888875 445555566554445 99999999988888654221 0011111110001 0 11236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+-...- . ..+....+.|+++|.+++.-
T Consensus 232 ~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------T--AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------H--HHHHHHHHHhhcCCEEEEEc
Confidence 8999854320 1 35567778899999998753
No 336
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.31 E-value=2.2 Score=36.94 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCceEEEeeccccHHHHHHH---HhC---CCcEEEEeCC--------------------------HHHHHHHHHHcCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLL---IRY---FNEVDLLEPV--------------------------SHFLDAARESLAPE 203 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~---~~~---~~~v~gvD~S--------------------------~~~l~~ar~~~~~~ 203 (284)
.-++.|+|+||=.|..+..+. +.. ..+++++|-= ...++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 456789999999998765432 222 1257777621 12456666777665
Q ss_pred CCCCCCCCcceeEEEcCCCCC-C-CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 204 NHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++. ..++.++.+.+.+. + .+..++-++..-.-+. +.....|..++..|.|||+++|-|-
T Consensus 153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 432 35788998887543 2 1223444443322221 1345789999999999999999664
No 337
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.31 E-value=5.1 Score=35.83 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred ceEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeE
Q 023288 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (284)
Q Consensus 159 ~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~ 233 (284)
.+||=.|+ |.|..+..+++.... +|++++.+++..+.+++.+... .-+.....++.+ + ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 78888885 578888878876554 6999999998888887644321 001111111110 0 011246999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+..-. . ..+..+.+.|+++|.++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 985322 1 2346778899999999874
No 338
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.03 E-value=2.8 Score=37.85 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=35.0
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~ 199 (284)
..++.+||=+|||. |..+..+++....+|+++|.++..++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999964 6666767765544799999999999988664
No 339
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=87.68 E-value=9.5 Score=32.17 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccH--HHHHH--HHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNL--LIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~--~s~~l--~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~ 211 (284)
+..+|+.-+.. ......|+++.|+.|. .+..| +.+ -..+++.|-+.+.-+...++.+...++ .
T Consensus 28 ~~aEfISAlAA-------G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~ 95 (218)
T PF07279_consen 28 GVAEFISALAA-------GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----S 95 (218)
T ss_pred CHHHHHHHHhc-------cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----c
Confidence 34455555432 3455678899766442 23333 322 222689998888888888887766554 2
Q ss_pred cceeEEEcCC-CCCCCCCCceeEEEecchhccCChhhHH-HHHHHHHhcCCCCcEEEEEeccCC
Q 023288 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 212 ~~~~~~~~d~-~~~~~~~~~fD~Iv~~~~l~~~~~~~~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
..++|+.++. +++...-...|+++...-. ++.. .+|+.+. +.|.|.+++..|...
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 3467777764 3322222357777643321 2433 4555432 556788999888765
No 340
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.57 E-value=1.9 Score=39.41 Aligned_cols=99 Identities=16% Similarity=-0.038 Sum_probs=58.8
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (284)
..++.+||=.|+| .|.++..+++.... .|+++|.++.-++.+++.-... -++....+..+ + ....+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence 4567788888876 35566666655443 6999999999999887642210 01111111100 0 011236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+|+-+-. . . ..+..+.+.|++||.+++.-.
T Consensus 260 ~d~vid~~G--~----~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAG--S----V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCC--C----h--HHHHHHHHHHhcCCEEEEEcc
Confidence 898885422 0 1 466777889999999987643
No 341
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.19 E-value=3.5 Score=36.96 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=61.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++...+.+++.+... ..+.+... +..+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 557789998886 5777777787765557999999998888887744321 00111110 1110 0 01124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-.-. . ..+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898885322 2 4567788999999999875
No 342
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.98 E-value=7.8 Score=34.24 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=59.9
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (284)
..++.+||=.| .|.|..+..+++....+|++++.+++-.+.+++. ... .-++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~-Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL-GFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 45677888887 4577777777776555799999999888888763 210 001111111100 0 011246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+|+-.-. . ..+....+.|+++|.++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898885322 2 4567888899999999865
No 343
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.92 E-value=0.31 Score=44.89 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=50.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
.+++..|.|+=||.|-++..++..++ .|++-|.+++++++.+.+++.+... ..++..+..|..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHH
Confidence 45778999999999999999887775 5999999999999999998765432 2235555555443
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.81 E-value=3.2 Score=37.40 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCC-C
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET-G 229 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~-~ 229 (284)
.+++.+||=.| .|.|.++..|++.....++++--|++-.+.+++.... ..+++...|+.+- .... .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 45688899888 4567888888877653577887888777777666443 1233333333221 1122 3
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+|+|+..-. . ..+.+....|+++|.++..-...
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986544 2 56777888999999999876544
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.76 E-value=6.6 Score=34.20 Aligned_cols=98 Identities=15% Similarity=0.022 Sum_probs=58.6
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE--cCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~f 231 (284)
.++.+||=+|+| .|..+..+++.... .|+++|.++.-++.+++.-... -+.... ..+... .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHH-hCCCCC
Confidence 467789888875 45555656655443 4899999998888887643210 000000 000011 112358
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+-.-. . . ..++.+.+.|+|+|.+++.-..
T Consensus 189 d~vid~~G-----~-~--~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSG-----A-T--AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCC-----C-h--HHHHHHHHHhcCCCEEEEeccC
Confidence 98875332 0 1 4677788899999999987543
No 346
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.73 E-value=3.9 Score=37.70 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh------CCC--cEEEEeC----CHHHHHHHHHHcCCCCCCCCCCCcceeEEE---c
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR------YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFC---V 219 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~------~~~--~v~gvD~----S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~---~ 219 (284)
..+..+|+|+|.|.|..-..|++. +++ ++|+|+. +..-++.+.+++....-. .+...+|.. .
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~---lgv~fef~~v~~~ 184 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARS---LGVPFEFHPVVVE 184 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHH---cCccEEEEecccC
Confidence 446779999999999765555542 222 8999999 777787777665432110 012233433 2
Q ss_pred CCCCCC-----CCCCceeEEEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 220 PLQDFT-----PETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 220 d~~~~~-----~~~~~fD~Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++++. ..++..=+|-+...+||+.++. ...+|+ ..+.|+|.-.+ ++|.
T Consensus 185 ~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv-~~E~ 244 (374)
T PF03514_consen 185 SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVV-LVEQ 244 (374)
T ss_pred chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEE-EEee
Confidence 343332 2334444555677789986322 223554 45578999544 4443
No 347
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.70 E-value=7.1 Score=34.61 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 228 (284)
..++.+||-+|+| .|..+..+++....+ +++++.++...+.+++.... .++..+-... ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4567899999876 366666666665544 89999999988888553211 1111110000 0123
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+|+|+.+..- . ..+..+.+.|+++|.++...
T Consensus 225 ~~vd~v~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV------P--KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence 468999864220 1 56777888999999998753
No 348
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.23 E-value=1 Score=42.40 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-------CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPET 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~ 228 (284)
....+|-+|-|.|.+...+..... ..+++|++.|.|++.|+.++....- .+....-.|..++ ..++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~~~ 368 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQED 368 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccccc
Confidence 456788899999998886654444 3899999999999999998754211 1112222222111 1244
Q ss_pred CceeEEEe----cchhccC--Chhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~----~~~l~~~--~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
..||++.. .. .|.+ ++.. -..++..+...|.|.|.+++-
T Consensus 369 ~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 369 ICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 67999873 22 3333 2222 346889999999999999774
No 349
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.21 E-value=6.3 Score=29.79 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=57.0
Q ss_pred CCceEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023288 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~I 234 (284)
...+|.|+|-|.=. .+..|.++++. |+++|+++. +. ...++++..|+++-... -...|+|
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCccce
Confidence 34599999988653 45556666675 999999875 11 13477899999874321 1357888
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++... ++++...+-.+++.++ -.+++.
T Consensus 75 YSiRp-----ppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 75 YSIRP-----PPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred eecCC-----CHHHHHHHHHHHHhhC--CCEEEE
Confidence 87665 4566677777776554 344443
No 350
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.15 E-value=1.3 Score=40.67 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=54.1
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|+=+|+| .|..+...+.....+|+.+|.++.-++.+...+.. .+.....+...+.-.-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999998 56666666655444799999998877766555432 01111111111110013689999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..-.....+.+. -+-+++.+.++||++++-
T Consensus 236 ~a~~~~g~~~p~--lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAKAPK--LVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCCCCc--CcCHHHHhcCCCCCEEEE
Confidence 753221111011 123555566899987665
No 351
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.04 E-value=5.4 Score=35.53 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=72.1
Q ss_pred CceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---------C
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------P 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 226 (284)
-..|+-+|||-=.-...+ .... .|.=+|. |+.++.=++.+.+.+.. .....+++..|+.+-. +
T Consensus 93 ~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~---~~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGAT---PPAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCC---CCceEEEEeccccccchHHHHHhcCC
Confidence 457999999853322222 2232 5666775 56666666666654321 1225778888887432 2
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....-=++++-+++.|++.+...++|..+...+.||-.+++..
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2344567889999999999999999999999999998888764
No 352
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.09 E-value=3.3 Score=37.26 Aligned_cols=98 Identities=17% Similarity=0.059 Sum_probs=56.3
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC---CCCCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~ 229 (284)
..++.+||=.||| .|..+..+++.... .|++++.++.-++.+++.-... -++....+ +... ....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~-~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ---------TFNSREMSAPQIQSV-LREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce---------EecCcccCHHHHHHH-hcCC
Confidence 4567788888875 44555556655444 4789999999888876532110 01100001 0011 1123
Q ss_pred cee-EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD-~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+| +|+-+-. . ...+....+.|++||.+++.-.
T Consensus 228 ~~d~~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLILETAG-----V---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 577 5553221 1 1477788899999999998754
No 353
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.57 E-value=11 Score=33.60 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-------CCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~ 225 (284)
..++.+||-.|+|. |..+..+++....+ |++++.++...+.+++. ... .-+.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT--------HTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc--------EEeccccccchhHHHHHHHH-
Confidence 45677888877764 66777777665555 89999888888877653 210 001111111 1111
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....+|+|+.+... . ..+....+.|+++|.++..
T Consensus 230 ~~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 122459999864331 1 3677788899999998865
No 354
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.51 E-value=4.1 Score=36.39 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=57.8
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||-.|+| .|..+..+++... ..+++++.++...+.+++.-.. .-+.....++ ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHH-cCC
Confidence 4467788887775 4667776776655 3688898888888777654211 0011111111 111 122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+|+|+....- . ..+....+.|+++|.++..
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 469998854221 1 4677788899999998865
No 355
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.50 E-value=4.2 Score=36.26 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=60.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC----CCCCCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~ 229 (284)
..++.+||-.|+|. |..+..+++....+++++..+++..+.+++.... .-+.....+ +... .+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 45677899998874 7777777776555799998899888888654211 001111111 1111 1224
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999865320 145777888999999988653
No 356
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.68 E-value=4 Score=33.37 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=55.6
Q ss_pred ceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---------CCC
Q 023288 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 228 (284)
..|+.+|||-=.....+.... ...++-+|. |++++.-++.+...+. ....+.+++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 389999999877777676543 225666665 4455555555443210 00123567888988532 234
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHH
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~ 256 (284)
+.--++++-.++.|++.++...+++.++
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 5667888889999999888888887763
No 357
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.27 E-value=9.8 Score=33.33 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=50.7
Q ss_pred eEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+... +.....+... -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHhH----hcCCCEEEEc
Confidence 466678884 455665555554 59999999988888765411 1111111111 1357888876
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
-. ......+++++...++|+-.+
T Consensus 65 vp-----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LP-----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CC-----HHHHHHHHHHHHHhCCCCcEE
Confidence 54 334556788888888876433
No 358
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.21 E-value=5.4 Score=37.18 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=53.0
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-.+.+|+=+|+|. |......++....+|+++|.++.-...+... |. .+ .++.+. . ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G~---------~v--~~leea-l--~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----GF---------RV--MTMEEA-A--KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----CC---------Ee--CCHHHH-H--hcCCEE
Confidence 3578999999995 5555555555445799999988654444321 11 11 122221 1 246888
Q ss_pred EecchhccCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~-~~~r~LkpGG~lii~e 269 (284)
+..-. . ..++. +....+|+|++++..-
T Consensus 255 ItaTG-------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG-------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 76432 1 23444 4788999999988763
No 359
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.43 E-value=6.1 Score=35.94 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=52.7
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (284)
.++.+||=.||| .|..+..+++....++++++.++.....+.+.+... .-+.... ..+... .+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~--------~vi~~~~~~~~~~~---~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD--------SFLVSTDPEKMKAA---IGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc--------EEEcCCCHHHHHhh---cCCCCE
Confidence 456788888876 556666666655556888887765443332222210 0000000 011111 124788
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+-.-. . . ..+..+.+.|++||.+++.-
T Consensus 251 vid~~g-----~-~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-H--HHHHHHHHHhcCCcEEEEeC
Confidence 884332 1 1 36777888999999998764
No 360
>PLN02740 Alcohol dehydrogenase-like
Probab=82.06 E-value=7.3 Score=35.68 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=58.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (284)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++.-.. ..++.... ++.+ + ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT---------DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc---------EEEecccccchHHHHHHHHhC
Confidence 5577899999886 45555556655444 699999999999988763211 00111100 0100 0 0111
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-. . . ..+......+++| |.+++.-.
T Consensus 267 ~g~dvvid~~G-----~-~--~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 267 GGVDYSFECAG-----N-V--EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCEEEECCC-----C-h--HHHHHHHHhhhcCCCEEEEEcc
Confidence 26898885433 1 1 4666777788897 98877543
No 361
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.95 E-value=1.8 Score=35.73 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
...+.+||-+|.= ||.++..++.. ..+|+.+|+.|.|-... ..+++|... ..+.++.+|+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeE
Confidence 3466789999986 88888888866 44699999999775433 233445443 3355689999
Q ss_pred EEecchhccCChh
Q 023288 234 IWVQWCIGHLTDD 246 (284)
Q Consensus 234 Iv~~~~l~~~~~~ 246 (284)
|+-.-.+..+.++
T Consensus 103 ivDlTGlGG~~Pe 115 (254)
T COG4017 103 IVDLTGLGGIEPE 115 (254)
T ss_pred EEeccccCCCCHH
Confidence 9988887777644
No 362
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.60 E-value=4.8 Score=35.47 Aligned_cols=87 Identities=18% Similarity=0.030 Sum_probs=54.2
Q ss_pred ceEEEeecc--ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEE
Q 023288 159 LVALDCGSG--IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~I 234 (284)
.+|+=+|.| .|.++..+...+.. .+++.|.+...++.+.+.--. ... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-------------d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-------------DELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-------------cccccchh--hhhcccCCEE
Confidence 467777776 45666666556665 589999998888877643211 111 1110 0112457999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
+.+-.+. ....+++++...|+||..+
T Consensus 69 ivavPi~-----~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIE-----ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHH-----HHHHHHHHhcccCCCCCEE
Confidence 8776554 4447888888888888654
No 363
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.09 E-value=12 Score=33.29 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=59.1
Q ss_pred ceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++|+=+||| .|.++..|.+.+ ..|+.++-+++.++..++.- |+..........+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 478899998 344555555444 46999999876666665421 1100000000111 111111 112347999886
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+-=-+ +...+++.+...+.|+..+++.-|-..
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 54322 445788999999999998888766443
No 364
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=80.33 E-value=1.7 Score=36.71 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
.+.-|.+||.|.|.+++.++..+..++..|+..+.++.-.+-..+.. ......+..|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 45679999999999999999888888999999988877665544332 22355555665443
No 365
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.13 E-value=6.6 Score=34.22 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhC------CCcEEEEeCCH
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS 190 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~ 190 (284)
.+...++|+|||.|.++.++.... ...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 466789999999999999888754 23789999754
No 366
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.10 E-value=7 Score=36.65 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=52.0
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|+=+|+|. |......++....+|+.+|.++.....+... | .++ .++.+. . ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G---------~~v--~~l~ea-l--~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G---------FRV--MTMEEA-A--ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C---------CEe--cCHHHH-H--hCCCEEE
Confidence 577999999984 4444444444444799999998665444321 1 111 122221 1 2579998
Q ss_pred ecchhccCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~-~~~r~LkpGG~lii~e 269 (284)
..-. . ..++. .....+|+|++++..-
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 6532 1 13454 6788899999888763
No 367
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.79 E-value=23 Score=31.71 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=58.2
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||=.|+| .|..+..+++.... .++++|.++...+.+++.-.. .-+.....+. ..+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT---------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc---------eEecCCCCCHHHHHHHH-hCC
Confidence 4567788888876 45566666655444 599999999888888753211 0011111111 011 122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+|+|+.+.. . . ..+..+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g-----~-~--~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG-----G-Q--DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC-----C-H--HHHHHHHHHhhcCCEEEEec
Confidence 36898885322 0 1 46788889999999988653
No 368
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.76 E-value=7.4 Score=34.58 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=51.3
Q ss_pred ceEEEeeccc-c-HHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 159 LVALDCGSGI-G-RITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 159 ~~VLDiGcGt-G-~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+|.=||+|. | .++..+...+. .+|+++|.++..++.+++.- . .. ....+..+. -...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~-------~~-~~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----L-------GD-RVTTSAAEA---VKGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----C-------Cc-eecCCHHHH---hcCCCEEE
Confidence 5788899885 3 34444444443 36999999998887776421 0 00 011121111 13578888
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.+-... ....++..+...++||..++.
T Consensus 72 iavp~~-----~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVG-----ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHH-----HHHHHHHHHHhhCCCCCEEEe
Confidence 665432 234566777777888875543
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=79.52 E-value=27 Score=32.33 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred CCCCceEEEeec-c-ccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC---CCC-
Q 023288 155 NNQHLVALDCGS-G-IGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc-G-tG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~---~~~- 225 (284)
.+++.+||=+|+ | .|..+..+++.. ..+|+++|.++.-++.+++........ ...+....+.. ++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~-----~Ga~~~~i~~~~~~~~~~ 247 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS-----RGIELLYVNPATIDDLHA 247 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc-----cCceEEEECCCccccHHH
Confidence 456778888873 4 777777777653 236999999999999998863211000 00111111111 110
Q ss_pred -----CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 -----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -----~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....||+|+..-.- ...+....+.++++|.+++.
T Consensus 248 ~v~~~t~g~g~D~vid~~g~--------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVPV--------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHhCCCCCCEEEEcCCC--------HHHHHHHHHHhccCCeEEEE
Confidence 112368988853210 14677788899988866553
No 370
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=79.42 E-value=16 Score=35.03 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=34.3
Q ss_pred CCceEEEeeccccHHHHHHHHhC--C---CcEEEEeCCHHHHHHHHHHc
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--F---NEVDLLEPVSHFLDAARESL 200 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~---~~v~gvD~S~~~l~~ar~~~ 200 (284)
+...|.|.-||+|.+........ . ..++|-+..+.+...++.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 45789999999999887544321 1 26999999999999998774
No 371
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.08 E-value=9.7 Score=35.57 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCceEEEeec-cc------cHHHHHHHHhCCC-cEEEEe-CCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-
Q 023288 156 NQHLVALDCGS-GI------GRITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (284)
Q Consensus 156 ~~~~~VLDiGc-Gt------G~~s~~l~~~~~~-~v~gvD-~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 225 (284)
.++..||=+|= |+ |-++.++..++.. -+++.| .-|..++..+..... .++.|+..+-..-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q---------~~v~~f~~~~~~~Pv 168 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ---------VGVPFFGSGTEKDPV 168 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH---------cCCceecCCCCCCHH
Confidence 45667777763 33 3445555443333 567777 456778888777654 33555554333322
Q ss_pred ---------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 226 ---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 226 ---------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+....||+|+.-..=.|--++++-.-++++...++|.=+|++.|.+..
T Consensus 169 ~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 223579999987654444467788889999999999999999987543
No 372
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.02 E-value=20 Score=31.53 Aligned_cols=91 Identities=26% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||=.|+| .|..+..+++....++++++.+++..+.+++ +... .. .+.... .....+|+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~--------~~-----~~~~~~-~~~~~~d~ 217 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGVE--------TV-----LPDEAE-SEGGGFDV 217 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc--------EE-----eCcccc-ccCCCCCE
Confidence 4567788888754 3344444454444469999999999998887 3220 00 111111 12346999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+.+.. . ...+..+.+.|+++|.+++.
T Consensus 218 vid~~g-----~---~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 218 VVEATG-----S---PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEECCC-----C---hHHHHHHHHHhhcCCEEEEE
Confidence 986421 1 14567778889999999874
No 373
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.84 E-value=6.2 Score=36.45 Aligned_cols=46 Identities=11% Similarity=-0.109 Sum_probs=37.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
.+++.+||-|.+|....... +...+.+|++||+||.++...+-+..
T Consensus 33 i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 67888999998877766664 55888899999999999888776543
No 374
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=78.60 E-value=26 Score=31.79 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=58.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (284)
.+++.+||=+|+| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++.... ++.+ . ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT---------DCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC---------EEEcccccchHHHHHHHHHhC
Confidence 4567888888875 45555556655444 699999999999888653211 00111110 0100 0 0112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-. . ...+..+.+.|+++ |.+++.-.
T Consensus 255 ~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEcc
Confidence 36898885322 1 14677778889997 98887643
No 375
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=78.52 E-value=24 Score=31.75 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=54.7
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-------CCCCCC
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-------QDFTPE 227 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~ 227 (284)
++.+||=.|+| .|..+..+++.... +|++++.++...+.+++. ... .-+.....+. .+. ..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~i~~~-~~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GAD--------ATIDIDELPDPQRRAIVRDI-TG 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCC--------eEEcCcccccHHHHHHHHHH-hC
Confidence 56778877765 44455555655444 799999998888777542 210 0011110110 111 11
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+-...- . ..+....+.|+++|.+++.-
T Consensus 247 ~~~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASGH------P--AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCCC------h--HHHHHHHHHhccCCEEEEEc
Confidence 2368998854210 1 45677788999999998763
No 376
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.30 E-value=14 Score=33.42 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (284)
.++.+||-+|+| .|..+..+++....++++++.++...+.+.+.+... .++. .+...+......+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~-----------~~i~~~~~~~~~~~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGAD-----------DYLVSSDAAEMQEAADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCc-----------EEecCCChHHHHHhcCCCcE
Confidence 456788877765 555666666655446888888887666665443221 0110 000001000124788
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+-.-. . ...+..+.+.|++||+++..-.
T Consensus 248 vid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 248 IIDTVP-----V---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EEECCC-----c---hHHHHHHHHHhccCCEEEEECC
Confidence 874322 1 1466777889999999988643
No 377
>PLN02827 Alcohol dehydrogenase-like
Probab=78.17 E-value=18 Score=33.11 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=56.2
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE--cCCCC-CC-CCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-FT-PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~--~d~~~-~~-~~~ 228 (284)
..++.+||=.|+| .|..+..+++. +...|+++|.++.-.+.+++.-.. .-++... .+... +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT---------DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc---------EEEcccccchHHHHHHHHHhC
Confidence 4567899988875 34455555554 333588999999988888654211 0011110 01100 00 111
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
+.+|+|+-.-. . . ..+....+.+++| |.+++.-
T Consensus 262 ~g~d~vid~~G-----~-~--~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVG-----D-T--GIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCC-----C-h--HHHHHHHHhhccCCCEEEEEC
Confidence 35898875332 1 1 3567778889998 9998753
No 378
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.08 E-value=26 Score=29.79 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=43.9
Q ss_pred eEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC----
Q 023288 160 VALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE---- 227 (284)
Q Consensus 160 ~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~---- 227 (284)
++|-.|++.|. ++..+++++. +|++++.++..++...+.... .++.++.+|+.+.. ..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGA---------GNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC---------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 57777765432 3333444454 599999998877766555431 34778888887642 00
Q ss_pred --CCceeEEEecch
Q 023288 228 --TGRYDVIWVQWC 239 (284)
Q Consensus 228 --~~~fD~Iv~~~~ 239 (284)
.+++|+|+.+..
T Consensus 73 ~~~~~id~vi~~ag 86 (260)
T PRK08267 73 ATGGRLDVLFNNAG 86 (260)
T ss_pred HcCCCCCEEEECCC
Confidence 346899886554
No 379
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.94 E-value=27 Score=31.79 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=58.7
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE--cCCCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~--~d~~~-~-~~~~ 228 (284)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++.-.. .-++... .++.+ . ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT---------DCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------eEEcccccchhHHHHHHHHhC
Confidence 4567889988886 45666666665444 699999999999988664221 0011110 00000 0 0111
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-.- ...+..+.+.+++| |.+++.-.
T Consensus 254 ~g~d~vid~~G~--------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIGN--------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHhhcCCCeEEEEec
Confidence 358888754220 14567777889886 98887644
No 380
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.74 E-value=18 Score=35.76 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=58.2
Q ss_pred CceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
..+|+=+||| .|......+......++.+|.+++.++.+++. ....+.+|.++.. ..-.+.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 3578878887 44444334434333599999999999988763 1356788887753 2234788
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++++... +++....+-...+.+.|.-.++..
T Consensus 467 ~vvv~~~-----d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 467 VLINAID-----DPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEEEeC-----CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 8776543 223334444556666787766664
No 381
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=77.52 E-value=4 Score=31.40 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCceEEEeeccccHH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023288 157 QHLVALDCGSGIGRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~-s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~I 234 (284)
...+|+|+|-|.=.- +..|.+.++ .|+++|+.+. .+ ...+.++..|+.+-..+ -...|+|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~---~a--------------~~g~~~v~DDif~P~l~iY~~a~lI 74 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR---KA--------------PEGVNFVVDDIFNPNLEIYEGADLI 74 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc---cc--------------ccCcceeeecccCCCHHHhcCCcEE
Confidence 345999999997654 444555565 5999999886 11 12366888888773311 1368999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++... +.++...+.++++.+ |.-++|.-
T Consensus 75 YSiRP-----P~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 75 YSIRP-----PPELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp EEES-------TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred EEeCC-----ChHHhHHHHHHHHHh--CCCEEEEC
Confidence 98776 346667777777654 45566653
No 382
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.15 E-value=4.3 Score=31.86 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.0
Q ss_pred Eeecccc--HHHHHHHH--hCCC-cEEEEeCCHHHHHHHHHH
Q 023288 163 DCGSGIG--RITKNLLI--RYFN-EVDLLEPVSHFLDAARES 199 (284)
Q Consensus 163 DiGcGtG--~~s~~l~~--~~~~-~v~gvD~S~~~l~~ar~~ 199 (284)
|||++.| ..+..++. .+.. +|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 55555442 2222 799999999999998888
No 383
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.89 E-value=31 Score=31.22 Aligned_cols=99 Identities=14% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC--CCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d--~~~-~-~~~~ 228 (284)
..++.+||=+|+| .|..+..+++.... +|+++|.++.-++.+++.-.. . -++....+ +.+ + ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~-~--------~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT-D--------FINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC-c--------EeccccccchHHHHHHHHhC
Confidence 4567888888875 44455555655444 699999999998888653211 0 01111000 000 0 0111
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-. . . ..+....+.|+|+ |.+++.-.
T Consensus 253 ~g~d~vid~~g-----~-~--~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 253 GGVDYSFECTG-----N-A--DLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCEEEECCC-----C-h--HHHHHHHHhcccCCCEEEEEcC
Confidence 35898884322 0 1 4667788889886 98887643
No 384
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.86 E-value=26 Score=29.19 Aligned_cols=103 Identities=15% Similarity=-0.021 Sum_probs=56.6
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (284)
+.+||-.|++.|. ++..+++.+. +|++++-++.-++...+.... ..++.++.+|+.+.. ++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 4578888875432 2222333444 699999988766655444332 124677788887532 00
Q ss_pred ---CCceeEEEecchhccC-Chhh--------------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 ---TGRYDVIWVQWCIGHL-TDDD--------------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ---~~~fD~Iv~~~~l~~~-~~~~--------------~~~~l~~~~r~LkpGG~lii~e 269 (284)
-+.+|.|+.+...... +..+ ...+++.+...++++|.+++.-
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1346877755432110 1001 1123556666777888777754
No 385
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.79 E-value=8.9 Score=35.46 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=47.4
Q ss_pred ceEEEeecc-ccHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023288 159 LVALDCGSG-IGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (284)
Q Consensus 159 ~~VLDiGcG-tG~~s~~l-~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (284)
.+||=|||| .|+..... ++++-.+|+..|-|+...+.+..... .+++..+.|+.+.+- --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCCE
Confidence 468999996 34444433 33343479999999988888876642 257788888877531 0135699
Q ss_pred EEecchh
Q 023288 234 IWVQWCI 240 (284)
Q Consensus 234 Iv~~~~l 240 (284)
|++....
T Consensus 72 VIn~~p~ 78 (389)
T COG1748 72 VINAAPP 78 (389)
T ss_pred EEEeCCc
Confidence 9876543
No 386
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.73 E-value=10 Score=33.85 Aligned_cols=97 Identities=19% Similarity=0.121 Sum_probs=58.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC---CCCCCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~ 229 (284)
..++.+||-.|+|. |..+..+++....+ +++++.++...+.+++. ... .-+...... +... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~--------~~~~~~~~~~~~~~~~-~~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD--------DTINPKEEDVEKVREL-TEGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC--------EEecCccccHHHHHHH-hCCC
Confidence 45677898888765 66777677665555 99999998888877543 110 001111000 1111 1223
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+.+.. . . ..+..+.+.|+++|.++...
T Consensus 227 ~~d~vld~~g-----~-~--~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG-----S-P--ATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC-----C-H--HHHHHHHHHhhcCCEEEEEc
Confidence 5999986521 1 1 46678889999999988764
No 387
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.40 E-value=6.3 Score=32.24 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=34.7
Q ss_pred CCCceeEEEecchhccCCh----------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~----------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.+..|+|+++++|+-+.. ++++.++.++..+|+|+-.++..-.
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt 100 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTA 100 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecC
Confidence 4578899999999987753 3477888888888989988877643
No 388
>PLN02494 adenosylhomocysteinase
Probab=76.26 E-value=6.3 Score=37.37 Aligned_cols=88 Identities=15% Similarity=-0.016 Sum_probs=52.2
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|+=+|+|. |......++....+|+++|.++.-...+...- ..+ .++.+. . ...|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------------~~v--v~leEa-l--~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------------YQV--LTLEDV-V--SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------------Cee--ccHHHH-H--hhCCEEE
Confidence 578999999993 44444444444447999999886544443221 111 122221 1 2579998
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....-. ..+..+....+||||.|+..-
T Consensus 315 ~tTGt~-------~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 315 TTTGNK-------DIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred ECCCCc-------cchHHHHHhcCCCCCEEEEcC
Confidence 633211 123467788999999998863
No 389
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=76.18 E-value=4.2 Score=35.29 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=44.2
Q ss_pred HHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHH
Q 023288 172 TKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250 (284)
Q Consensus 172 s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~ 250 (284)
+..|.+.++. +|+|+|.++..++.|.+.-.. +-...+.+. . ..+|+|+.+-.+. ....
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------------~~~~~~~~~--~--~~~DlvvlavP~~-----~~~~ 60 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGII------------DEASTDIEA--V--EDADLVVLAVPVS-----AIED 60 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------------SEEESHHHH--G--GCCSEEEE-S-HH-----HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------------eeccCCHhH--h--cCCCEEEEcCCHH-----HHHH
Confidence 4556556643 899999999999988765221 111111111 1 2469999776543 4558
Q ss_pred HHHHHHhcCCCCcEEE
Q 023288 251 FFKRAKVGLKPGGFFV 266 (284)
Q Consensus 251 ~l~~~~r~LkpGG~li 266 (284)
+++++...+++|+.+.
T Consensus 61 ~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 61 VLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHCGS-TTSEEE
T ss_pred HHHHhhhhcCCCcEEE
Confidence 8888888888886544
No 390
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.17 E-value=11 Score=33.67 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||=.||| .|..+..+++....+++.++.++.-++.+++. ... .-+.....+..........+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~-g~~--------~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL-GAH--------HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-CCc--------EEecCCCccHHHHHHhcCCCCE
Confidence 4566788888864 45555555655554799999998888888553 210 0011111111000000124788
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+.... . . ..+..+.+.|+++|.++..-
T Consensus 232 vi~~~g----~--~--~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILATAP----N--A--KAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEECCC----c--h--HHHHHHHHHcccCCEEEEEe
Confidence 885321 0 1 46777888999999988753
No 391
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.10 E-value=8 Score=33.77 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~ 190 (284)
..+++...|+|+-.|.++-.+.+++.. |++||--+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~-V~aVDng~ 243 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMR-VYAVDNGP 243 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceE-EEEeccch
Confidence 467899999999999999999987775 99999643
No 392
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.13 E-value=9.9 Score=33.78 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=50.2
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|+=+|+|. |......+.....+|+++|.++...+.++..- ..+. +..++...-..+|+||
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G-------------~~~~--~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMG-------------LSPF--HLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------------Ceee--cHHHHHHHhCCCCEEE
Confidence 568999999983 34444444444447999999987766665421 1111 1111111113689999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
..-.. . -+-+++.+.++||+.++
T Consensus 216 ~t~p~------~--~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 216 NTIPA------L--VLTKEVLSKMPPEALII 238 (296)
T ss_pred ECCCh------h--hhhHHHHHcCCCCcEEE
Confidence 75321 1 23355667789988665
No 393
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.04 E-value=5.3 Score=35.37 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=59.6
Q ss_pred EeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCc
Q 023288 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 186 vD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG 263 (284)
....+..-+.++.+.. ++.++.+|+.++.. +.+..|.++...+-.++++..+..+..++.+-+.||.
T Consensus 292 ~yl~~~~YEsir~n~~-----------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA 360 (414)
T COG5379 292 AYLDEGVYESIRQNLR-----------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGA 360 (414)
T ss_pred hhhchhhHHHHHhhhh-----------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCc
Confidence 3445566676766653 47788888887653 5689999999999999999999999999999999999
Q ss_pred EEEEEe
Q 023288 264 FFVLKE 269 (284)
Q Consensus 264 ~lii~e 269 (284)
.+++..
T Consensus 361 ~VifRt 366 (414)
T COG5379 361 RVIFRT 366 (414)
T ss_pred EEEEec
Confidence 999963
No 394
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.00 E-value=7.6 Score=30.85 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=54.1
Q ss_pred EEEeeccccHHHH-HHHHhCCCcEEEEeCCHHHHHHHHHHcCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 161 ALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 161 VLDiGcGtG~~s~-~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
|.=+|+|.+..+. ..+.....+|+....+++.++..++.-.... +.......++.+ ..|+.+.- ...|+|+..-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEecc
Confidence 5567888655433 2333444579999999988888877543211 111111223322 33443211 2468777543
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
. ....+.+++++...++++-.+++
T Consensus 78 P-----s~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 78 P-----SQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp ------GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred c-----HHHHHHHHHHHhhccCCCCEEEE
Confidence 3 22455899999999977766665
No 395
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.80 E-value=36 Score=29.81 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (284)
++.+||-.|++.|. ++..+++.+. +|+.++.++..++...+.+.. ...+..+.+|+.+.. .
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG--------DDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCCHHHHHHHHHH
Confidence 35678877765542 2333333444 699999998877766555432 123445557777632 0
Q ss_pred ---CCCceeEEEecchh
Q 023288 227 ---ETGRYDVIWVQWCI 240 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l 240 (284)
.-+..|+||.+-..
T Consensus 79 ~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 79 AVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 11468999976543
No 396
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=74.49 E-value=15 Score=32.99 Aligned_cols=98 Identities=22% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-T-PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~ 229 (284)
..++.+||=.|+| .|..+..+++.... .|++++.++...+.+++.-.. .-+.....++.+ + . ...+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGAT---------IVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEECCCccCHHHHHHHHhCCC
Confidence 4567788888764 44555555655444 699999999988888653211 001111111100 0 0 1123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+-+... . ..+..+.+.|+++|.++..-
T Consensus 241 ~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------Q--ATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------H--HHHHHHHHhccCCCEEEEEc
Confidence 48999854321 1 36677888999999988764
No 397
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=74.38 E-value=2.1 Score=38.58 Aligned_cols=111 Identities=11% Similarity=0.022 Sum_probs=74.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHH-------HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-------ARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~-------ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (284)
..++.-|.|-=-|||.+....+ ....-|.|.||+-.|+.. .+.+++..|.. ..-+.+..+|...-+..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPPLR 280 (421)
T ss_pred cCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcchh
Confidence 5688899999999999988655 555569999999888873 23444444432 22356677888776543
Q ss_pred -CCceeEEEecch------------------------hccCChhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -TGRYDVIWVQWC------------------------IGHLTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -~~~fD~Iv~~~~------------------------l~~~~~~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..||.|+|-.. ..|.|.-. ....+.-.+++|.-||++++-=+
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 458999996511 11222111 34566777899999999998533
No 398
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.38 E-value=13 Score=34.04 Aligned_cols=95 Identities=16% Similarity=-0.006 Sum_probs=53.2
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~-l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD 232 (284)
.++.+||=.||| .|..+..+++....++++++.++.. .+.+++.-.. .-+.... ..+.+. . +.+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~v~~~--~-~~~D 244 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD---------SFLVTTDSQKMKEA--V-GTMD 244 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCc---------EEEcCcCHHHHHHh--h-CCCc
Confidence 356788888875 4556666666555568999887554 4555332111 0000000 001111 1 2488
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+-.-. . . ..+..+.+.+++||.++..-.
T Consensus 245 ~vid~~G-----~-~--~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 245 FIIDTVS-----A-E--HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEEECCC-----c-H--HHHHHHHHhhcCCCEEEEEcc
Confidence 8885422 1 1 366778889999999987643
No 399
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=74.34 E-value=26 Score=30.76 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=51.1
Q ss_pred eEEEeecccc-H-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCCCCCCCCceeEEEe
Q 023288 160 VALDCGSGIG-R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGtG-~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~Iv~ 236 (284)
+|+=+|+|.- . ++..|.+.+ .+|+.++. +..++..++.- +..........+ ... ..+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g-~~V~~~~r-~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLVR-PKRAKALRERG----LVIRSDHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CceEEEec-HHHHHHHHhCC----eEEEeCCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 5777888853 3 334344334 46999998 66666555421 100000000000 000 1111111146898876
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+--- .....+++.+...+.++..++..-|
T Consensus 75 avk~-----~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 75 AVKA-----YQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred Eecc-----cCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 5432 2455788888888888877766555
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.31 E-value=42 Score=31.38 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=43.6
Q ss_pred CCceEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
...+|+=+||| .++..+++ .....|+.+|.+++.++..++... .+.++.+|..+.. ..-.
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----------~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP-----------NTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----------CCeEEECCCCCHHHHHhcCCc
Confidence 45678877775 44444443 333369999999999988877642 2456777776432 2234
Q ss_pred ceeEEEec
Q 023288 230 RYDVIWVQ 237 (284)
Q Consensus 230 ~fD~Iv~~ 237 (284)
.+|.|++.
T Consensus 297 ~a~~vi~~ 304 (453)
T PRK09496 297 EADAFIAL 304 (453)
T ss_pred cCCEEEEC
Confidence 68888754
No 401
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=73.79 E-value=28 Score=32.13 Aligned_cols=105 Identities=10% Similarity=-0.052 Sum_probs=58.4
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCC----CCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL----QDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~----~~~~~~ 227 (284)
..++.+||=.|+| .|..+..+++. +...++.+|.++.-++.+++.-.. .+.... .+. .+. ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~----------~v~~~~~~~~~~~v~~~-~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE----------TVDLSKDATLPEQIEQI-LG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe----------EEecCCcccHHHHHHHH-cC
Confidence 4566777777775 45555555554 333466778998888888774211 010000 011 111 11
Q ss_pred CCceeEEEecchhc------cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 TGRYDVIWVQWCIG------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~------~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...+|+|+-.-.-. .....+....++.+.+++++||.+++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 23589888533311 00001222478888999999999998654
No 402
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.76 E-value=42 Score=28.66 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=41.8
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (284)
+.++|=.|++.|. ++..+++.+. +|+.++.++.-++...+... .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG----------ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CeeEEEEecCCCHHHHHHHHHHH
Confidence 4578877764442 2333444455 69999998765555444331 24667888887642 00
Q ss_pred ---CCceeEEEecch
Q 023288 228 ---TGRYDVIWVQWC 239 (284)
Q Consensus 228 ---~~~fD~Iv~~~~ 239 (284)
-+..|+++.+..
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 146788886643
No 403
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.69 E-value=37 Score=29.03 Aligned_cols=103 Identities=13% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCceEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 157 QHLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 157 ~~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
++..+|-.|++. |. ++..+++.+. +|+.++.+....+..++..... ....++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--------DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--------ccceEEecCcCCHHHHHHHH
Confidence 456788888764 32 3334444455 5888888765433333322211 11345677876642
Q ss_pred ----CCCCceeEEEecchhc----------cCChhhHHHH-----------HHHHHhcCCCCcEEEEE
Q 023288 226 ----PETGRYDVIWVQWCIG----------HLTDDDFVSF-----------FKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ----~~~~~fD~Iv~~~~l~----------~~~~~~~~~~-----------l~~~~r~LkpGG~lii~ 268 (284)
-.-+..|+++.+..+. .++.+++... .+.+...++.+|.+++.
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 0115789998765432 1233333333 35566677778877664
No 404
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.62 E-value=13 Score=33.60 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=53.9
Q ss_pred CceEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC-------CCCCCCCCCcceeEEEcCCCCCCCCC
Q 023288 158 HLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTPET 228 (284)
Q Consensus 158 ~~~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (284)
-.+|-=||+|+ ..++..++..++ +|+.+|++++.++.+++.+.. .+........++++. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a---v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC---V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH---h
Confidence 35788899983 334444555565 499999999988876654321 111000000112211 121110 1
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF 264 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~ 264 (284)
...|+|+-+- ...+. -...+++++.+.++|+-.
T Consensus 82 ~~aDlViEav-pE~l~--vK~~lf~~l~~~~~~~aI 114 (321)
T PRK07066 82 ADADFIQESA-PEREA--LKLELHERISRAAKPDAI 114 (321)
T ss_pred cCCCEEEECC-cCCHH--HHHHHHHHHHHhCCCCeE
Confidence 3467777542 22222 244788999999999873
No 405
>PRK08324 short chain dehydrogenase; Validated
Probab=73.31 E-value=23 Score=35.39 Aligned_cols=103 Identities=23% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCceEEEeecccc--HH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023288 157 QHLVALDCGSGIG--RI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG--~~-s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (284)
++.+||=.|++.| .. +..+++.+. +|+++|.++.-++.+.+.+.. ..++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~--------~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGG--------PDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhc--------cCcEEEEEecCCCHHHHHHHHHH
Confidence 4567888886433 32 223333444 699999998877766655432 124667788877632 11
Q ss_pred ----CCceeEEEecchhcc------CChhh-----------HHHHHHHHHhcCCC---CcEEEEE
Q 023288 228 ----TGRYDVIWVQWCIGH------LTDDD-----------FVSFFKRAKVGLKP---GGFFVLK 268 (284)
Q Consensus 228 ----~~~fD~Iv~~~~l~~------~~~~~-----------~~~~l~~~~r~Lkp---GG~lii~ 268 (284)
-+.+|+||.+-.... .+.++ ...+++.+.+.+++ ||.+++.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 146899986654221 12121 22445666666665 6777775
No 406
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=73.18 E-value=14 Score=28.63 Aligned_cols=102 Identities=20% Similarity=0.181 Sum_probs=54.4
Q ss_pred EEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEEEecc
Q 023288 161 ALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 161 VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~Iv~~~ 238 (284)
|+=+|+| .|.+....+.+...+|+.+.-++ -++..++.--... ....+..+.. ............||+|+.+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTIT----GPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEE----ETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEE----ecccceecccccccCcchhccCCCcEEEEEe
Confidence 3446666 34444444434444699999877 5665444311000 0000000000 01111011246899998764
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
= ..+...+++.+...+.|+..+++.-|..
T Consensus 76 K-----a~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 76 K-----AYQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp S-----GGGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred c-----ccchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 2 1255689999999999998888876643
No 407
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.01 E-value=37 Score=29.89 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=54.1
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||=.||| .|..+..+++....+++.++.++...+.+++. .. +.. .+.... ....+|+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~-g~------------~~~-~~~~~~--~~~~vD~ 228 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELAREL-GA------------DWA-GDSDDL--PPEPLDA 228 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-CC------------cEE-eccCcc--CCCcccE
Confidence 4566777777765 33344445554445799999998888777442 21 110 011111 1245888
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..... . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV------G--ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc------H--HHHHHHHHHhhcCCEEEEEc
Confidence 7743210 1 46788899999999999764
No 408
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.78 E-value=31 Score=30.22 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=54.0
Q ss_pred eEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|+=+|||. |. ++..|.+.+ .+|+.++.++..++..++.-.. . . .........-..+.. +...+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~--~---~-~~~~~~~~~~~~~~~-~~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLR--L---E-DGEITVPVLAADDPA-ELGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCc--c---c-CCceeecccCCCChh-HcCCCCEEEEe
Confidence 577788874 32 334344334 4699999877777666543110 0 0 000100000011111 11478998876
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
---. +...+++.+...+.++..+++.-|.
T Consensus 74 ~k~~-----~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 74 VKAY-----QLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred cccc-----cHHHHHHHHhhhcCCCCEEEEecCC
Confidence 4422 4557888888888888777766553
No 409
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.69 E-value=45 Score=29.65 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCCC
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~ 229 (284)
.++.+||-.|+| .|..+..+++....+ |++++-++.-.+.+++.-.. .-+.....++ ..+ .+..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~l~~~-~~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT---------YVVNPFKEDVVKEVADL-TDGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------EEEcccccCHHHHHHHh-cCCC
Confidence 456677776665 455666666655554 88888888777776654211 0011111111 011 1224
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+.+.. . . ..+..+.+.|+++|.++..-
T Consensus 230 ~~d~vld~~g----~--~--~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 230 GVDVFLEMSG----A--P--KALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCEEEECCC----C--H--HHHHHHHHhhcCCCEEEEEc
Confidence 6899986522 1 2 46778888999999988763
No 410
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.56 E-value=28 Score=34.23 Aligned_cols=90 Identities=9% Similarity=0.019 Sum_probs=55.3
Q ss_pred ceEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 159 LVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
.+|+=+|+| +++..+++ ....+++.+|.+++.++.+++. ....+.+|.++.. ..-.+.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCccC
Confidence 456655555 44444433 3333699999999999988753 1356788887743 223467
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.+++... +++-...+-...|.+.|...++..
T Consensus 466 ~~vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 466 EAIVITCN-----EPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CEEEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 87776543 222223444456667888888775
No 411
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=71.81 E-value=39 Score=30.50 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------CCC
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 227 (284)
.++.+||=.|+| .|..+..+++..... +++++.++...+.+++. ... .++...-..+ ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~~-----------~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GAT-----------HTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCc-----------eEecCCcccHHHHHHHHhC
Confidence 456777766664 555555566554445 99999998888877543 110 1111110110 012
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+..-. . . ..+..+.+.|+++|.++...
T Consensus 254 ~~~~d~vld~vg-----~-~--~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG-----K-P--ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC-----C-H--HHHHHHHHHHhcCCEEEEEc
Confidence 346899885422 1 1 25677888999999988763
No 412
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=71.73 E-value=18 Score=32.26 Aligned_cols=103 Identities=16% Similarity=0.005 Sum_probs=52.4
Q ss_pred CCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
...+|+=+|+| .|.++..|.+.+ .+|+.+.-++ .+..+++ ++.-........+........+.....||+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~--~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD--YEAVREN----GLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC--HHHHHhC----CeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 34689999988 334555444444 4588887765 2322221 1100000000111000011111112479999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+.+---+ +...+++.+...++|++.++..-|-
T Consensus 77 ilavK~~-----~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 77 LVGLKTT-----ANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred EEEecCC-----ChHhHHHHHhhhcCCCCEEEEecCC
Confidence 8664322 2346788888889999988776553
No 413
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.81 E-value=37 Score=32.98 Aligned_cols=90 Identities=12% Similarity=-0.040 Sum_probs=52.7
Q ss_pred ceEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 159 LVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
.+|+=+||| ..+..+++ ....+++.+|.+++.++.+++. ....+.+|..+.. ..-+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCCHHHHHhcCcccc
Confidence 456656665 44444443 3333699999999999888753 1457888887742 223467
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.+++.-. +++-...+-.+.+...|.-.++..
T Consensus 483 ~~viv~~~-----~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIP-----NGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcC-----ChHHHHHHHHHHHHHCCCCeEEEE
Confidence 86664322 112112333344556787777765
No 414
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=70.79 E-value=50 Score=28.50 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||-.|| +.|..+..++......+++++.++...+.+++.... .-+.....+. ... ...
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~i~~~-~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGAD---------HVIDYRDPDLRERVKAL-TGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCc---------eeeecCCccHHHHHHHH-cCC
Confidence 446789999998 466666666666555699999998888877543110 0001000011 001 122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+++.+.. . ..+..+.+.++++|.++..
T Consensus 207 ~~~d~v~~~~g-------~--~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVG-------G--DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECcc-------H--HHHHHHHHhhccCCEEEEE
Confidence 35898875432 1 2445667888999988765
No 415
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.50 E-value=14 Score=32.54 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred CCCceEEEeeccccHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCcee
Q 023288 156 NQHLVALDCGSGIGRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l-~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD 232 (284)
-.+..|+=+| -.-..+.++ +...+.+|..+|+.+..++..++.++..|+ .+++.+.-|+.+.-++ .+.||
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCC
Confidence 3566799998 333333333 334566999999999999999888877664 4577788888763222 26899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCC---cEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG---G~lii~ 268 (284)
+++.-.. ..++ .+..++.+=-..||.- |++.++
T Consensus 224 vfiTDPp-eTi~--alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 224 VFITDPP-ETIK--ALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred eeecCch-hhHH--HHHHHHhccHHHhcCCCccceEeee
Confidence 8875433 2222 4566777767777765 777775
No 416
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.48 E-value=31 Score=30.86 Aligned_cols=100 Identities=17% Similarity=0.066 Sum_probs=56.6
Q ss_pred eEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|+=+||| .|.++..|.+.+ ..|+.+--++. ++..+++ |+.-.....+..+... ....+...+.+|+|+..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~i~~~~~~~~~~~~-~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLRIEDEGGNFTTPVV-AATDAEALGPADLVIVT 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeEEecCCCccccccc-cccChhhcCCCCEEEEE
Confidence 67888998 455666666555 55666665554 6666654 2210000000000111 01111123479999865
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
-=-+ +..++++.+...++|...+++.-|-
T Consensus 75 vKa~-----q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 75 VKAY-----QLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred eccc-----cHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 4322 4568999999999999988887664
No 417
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=70.37 E-value=43 Score=28.73 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=52.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+||=.|+ +.|..+..++.....+++.++.++ ..+.+++ +... .-+.....+... ......+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~~--------~~~~~~~~~~~~-~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGAD--------EVIDYTKGDFER-AAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCCC--------EEEeCCCCchhh-ccCCCCce
Confidence 346678888886 366666666665555688887666 6666643 2110 000001111111 12234689
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++.+.. . ..+..+.+.|+++|.++..
T Consensus 211 ~v~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 211 AVLDTVG-------G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred EEEECCc-------h--HHHHHHHHHHhcCcEEEEE
Confidence 8885322 1 2567777889999998865
No 418
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.57 E-value=6.4 Score=32.00 Aligned_cols=38 Identities=18% Similarity=0.045 Sum_probs=27.8
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHH
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLD 194 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~ 194 (284)
.+.+|.=+|+| .|......++....+|+++|.+.....
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 46789999987 555555556555558999999988666
No 419
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=68.44 E-value=64 Score=27.21 Aligned_cols=74 Identities=16% Similarity=0.021 Sum_probs=43.0
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C---
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 226 (284)
+.++|=.|++.|. ++..+++.+. +|+.++.++..++...+..... ..++.++.+|+.+.. +
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQE-------GIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 4567877755442 2333343444 6999998877666554444321 123566777877642 0
Q ss_pred --CCCceeEEEecch
Q 023288 227 --ETGRYDVIWVQWC 239 (284)
Q Consensus 227 --~~~~fD~Iv~~~~ 239 (284)
.-+.+|+|+.+..
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 1146899987654
No 420
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=68.26 E-value=14 Score=33.48 Aligned_cols=97 Identities=18% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC----CCCCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~ 228 (284)
..++.+||-.|+|. |..+..+++.... .++++|.++...+.+++.-.. .-+.....+ +.... .
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~---------~~i~~~~~~~~~~v~~~~--~ 252 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT---------HVINPKEEDLVAAIREIT--G 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc---------EEecCCCcCHHHHHHHHh--C
Confidence 44677888888753 5566666655444 699999999888877653211 000000001 11111 2
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+|+|+-+-. . . ..+..+.+.|+++|.++..-.
T Consensus 253 ~~~d~vld~~g-----~-~--~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 253 GGVDYALDTTG-----V-P--AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCCcEEEECCC-----C-c--HHHHHHHHHhccCCEEEEeCc
Confidence 46898885421 0 1 457788889999999887643
No 421
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.24 E-value=54 Score=29.16 Aligned_cols=96 Identities=17% Similarity=0.060 Sum_probs=54.8
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC---CCCCCCCCc
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---QDFTPETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~ 230 (284)
.++.+||-.|+|. |..+..+++.... .|++++-++.-.+.+++.-.. ..+.....+. ..+ ...+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~-~~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD---------VVINPREEDVVEVKSV-TDGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc---------eeeCcccccHHHHHHH-cCCCC
Confidence 4567777777653 5666666665554 588888777777666643211 0011111111 111 12246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+.+-. . . ..+..+.+.|+++|.++...
T Consensus 232 vd~vld~~g----~--~--~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 232 VDVVLEMSG----N--P--KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCEEEECCC----C--H--HHHHHHHHHhccCCEEEEEc
Confidence 899986432 0 1 35677788999999988753
No 422
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.92 E-value=7.8 Score=29.96 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=45.1
Q ss_pred CCceEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+||=+|+|. |+ ....+...++.+++.+.-+.+-.+...+.+.. ..+.+. ++.++.-....+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~--~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---------VNIEAI--PLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---------CSEEEE--EGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---------ccccee--eHHHHHHHHhhCCeE
Confidence 568999999973 22 33444556777899999987766665555522 223333 333332112479999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+.+....+
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98766543
No 423
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=67.76 E-value=37 Score=31.01 Aligned_cols=97 Identities=14% Similarity=-0.035 Sum_probs=54.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc---C----CCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~---d----~~~~~ 225 (284)
..++.+||=.||| .|..+..+++.... .|++++.++.-.+.+++.-.. .-+..... + +..+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~~~~v~~~- 270 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGAD---------YVFNPTKMRDCLSGEKVMEV- 270 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---------EEEcccccccccHHHHHHHh-
Confidence 4566788777765 33344445544444 699999888876666653211 00111100 1 1111
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....+|+|+.+.. .....+..+.+.|+++|+++..
T Consensus 271 ~~g~gvDvvld~~g-------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQVEAAG-------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEEECCC-------CcHHHHHHHHHHHHcCCEEEEE
Confidence 12235898886422 1124677788889999999875
No 424
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=67.69 E-value=66 Score=28.18 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||=.|+ +.|..+..+++....++++++.++...+.+++.+... .-+.....+. .... .
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~v~~~~--~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFD--------AAINYKTPDLAEALKEAA--P 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCc--------eEEecCChhHHHHHHHhc--c
Confidence 345678888874 4677777777765557999998888888776643221 0011110011 1111 1
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 213 ~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 213 DGIDVYFDNVG-------G--EILDAALTLLNKGGRIALC 243 (329)
T ss_pred CCceEEEEcch-------H--HHHHHHHHhcCCCceEEEE
Confidence 46898885322 1 3677788889999998865
No 425
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.54 E-value=29 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHH
Q 023288 157 QHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAA 196 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~a 196 (284)
++.+|+-+|+| .|......+.. +...|+.++.++.-....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 57899999997 34443333333 556799999998755433
No 426
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=67.37 E-value=59 Score=29.39 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=56.7
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (284)
..++.+||=.|+| .|..+..+++.... +|++++.++.-++.+++.-.. .-++.... ++.+ + ....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT---------EFVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcccccchhHHHHHHHHhC
Confidence 4577888888875 34455556655444 699999999999988663211 00111100 0000 0 0112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-. . ...+..+.+.+++| |.+++.-.
T Consensus 256 ~~~d~vid~~G-----~---~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 256 GGVDYSFECTG-----N---IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCCEEEECCC-----C---hHHHHHHHHHhhcCCCEEEEECc
Confidence 35888874321 0 14666677888996 99887643
No 427
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=67.18 E-value=48 Score=28.44 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=47.7
Q ss_pred ceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.++|=+|.= +|.+....+...+ +|+.+|+.|.+.+... .++.|...- ...+..+|+|+-.
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~--------------~~i~F~~~~----~~~~~~~DlIID~ 103 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLN--------------ENIKFMEFR----NGLEGNPDLIIDT 103 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhc--------------CCCceeecc----CCCCCCCCEEEEC
Confidence 478888865 6666666666666 7999999999888662 235565221 1123589999988
Q ss_pred chhccCChh
Q 023288 238 WCIGHLTDD 246 (284)
Q Consensus 238 ~~l~~~~~~ 246 (284)
-.+..+.++
T Consensus 104 TGlGGv~~~ 112 (252)
T PF06690_consen 104 TGLGGVDPD 112 (252)
T ss_pred CCCCCCCHH
Confidence 888887643
No 428
>PRK08507 prephenate dehydrogenase; Validated
Probab=67.10 E-value=35 Score=29.68 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=48.3
Q ss_pred eEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+|.=||+|. |.++..+.+.+.. .|+++|.++..++.+++.- . +.. ..+..+. . ..|+|+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g----~--------~~~-~~~~~~~--~--~aD~Vil 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELG----L--------VDE-IVSFEEL--K--KCDVIFL 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCC----C--------Ccc-cCCHHHH--h--cCCEEEE
Confidence 466678774 4455555555543 6999999998877765321 0 000 1121111 1 2688886
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+-. ......++.++.. ++||..++
T Consensus 65 avp-----~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 65 AIP-----VDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred eCc-----HHHHHHHHHHHhc-cCCCCEEE
Confidence 554 3355577778877 77776433
No 429
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.86 E-value=82 Score=27.06 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=41.1
Q ss_pred CceEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 158 ~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
+..+|=.|++. |. ++..+++.+. +|+.++.+....+.+++..... ....++.+|+.+..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL--------GSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhcc--------CCceEeecCCCCHHHHHHHHH
Confidence 45788888754 32 4555565665 4888887643333333332221 12446677887632
Q ss_pred ---CCCCceeEEEecchh
Q 023288 226 ---PETGRYDVIWVQWCI 240 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l 240 (284)
-.-+++|++|.+-.+
T Consensus 77 ~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHhhcCCCCEEEECCcc
Confidence 012468999876643
No 430
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.76 E-value=61 Score=30.25 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=52.1
Q ss_pred eEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 160 VALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
+|+=+|| |.++..++. ....+|+++|.++..++.+++.. .+.++.+|..+.. ..-..+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------------DVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------------CEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4666666 566665554 22336999999999888776532 2456667765431 1234688
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.|++... +++....+....+.+.|.-.+++
T Consensus 68 ~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTD-----SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecC-----ChHHHHHHHHHHHHhcCCCeEEE
Confidence 8876543 22333445555666655554544
No 431
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=66.16 E-value=50 Score=28.34 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=43.3
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC--
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE-- 227 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-- 227 (284)
+.++|=.|++.|. ++..+++.+. +|+.++.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 4567777765442 2333343455 5999998877666554444321 134677788887642 00
Q ss_pred ---CCceeEEEecch
Q 023288 228 ---TGRYDVIWVQWC 239 (284)
Q Consensus 228 ---~~~fD~Iv~~~~ 239 (284)
-+++|++|.+-.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 146899886643
No 432
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=65.73 E-value=23 Score=31.39 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=48.7
Q ss_pred eEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|-=||+|. +.++..+++.+. +|++.|.++..++.+++.... . ..+..++.......|+|+++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~-----------~---~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTT-----------G---VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc-----------c---cCCHHHHHhhcCCCCEEEEE
Confidence 455678874 234555555554 599999999887777653110 0 01111111001235888765
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
-. +.....++..+...|++|-.+
T Consensus 67 vp-----~~~~~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 67 VP-----HGIVDAVLEELAPTLEKGDIV 89 (298)
T ss_pred cC-----chHHHHHHHHHHhhCCCCCEE
Confidence 32 234557788888888887544
No 433
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=65.40 E-value=15 Score=32.61 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
...+.+|.-||+|...... ++.+.+.+|++||+++..|...+-+..
T Consensus 61 ~g~ghrivtigSGGcn~L~-ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLA-YLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHH-HhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 3467899999999776666 455778899999999999887766543
No 434
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=65.26 E-value=19 Score=34.22 Aligned_cols=86 Identities=15% Similarity=0.040 Sum_probs=50.9
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|+=+|+|. |......+.....+|+++|.++.....+... | ..+ .++.+.. ...|+|+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G---------~~~--~~leell---~~ADIVI 314 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----G---------YQV--VTLEDVV---ETADIFV 314 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C---------cee--ccHHHHH---hcCCEEE
Confidence 578999999995 4444434434444799998887654333221 1 111 1222211 3579998
Q ss_pred ecchhccCChhhHHHHH-HHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l-~~~~r~LkpGG~lii~ 268 (284)
..-.- ..++ .+....+|||++|+-+
T Consensus 315 ~atGt--------~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 315 TATGN--------KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ECCCc--------ccccCHHHHhccCCCcEEEEc
Confidence 75321 1233 4677889999998876
No 435
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=64.80 E-value=73 Score=28.08 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=51.4
Q ss_pred CceEEEe--ec-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-C-CCCCce
Q 023288 158 HLVALDC--GS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-T-PETGRY 231 (284)
Q Consensus 158 ~~~VLDi--Gc-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~f 231 (284)
+.++|=+ |+ +.|..+..+++....++++++.++.-.+.+++. ... .-+.....++.+ . . .....+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~-g~~--------~~i~~~~~~~~~~v~~~~~~~~~ 213 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI-GAE--------YVLNSSDPDFLEDLKELIAKLNA 213 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCc--------EEEECCCccHHHHHHHHhCCCCC
Confidence 3345443 33 356666666665555799999999988888763 210 001111111100 0 0 112358
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+-+-. . ..+....+.|++||+++..-
T Consensus 214 d~vid~~g-------~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 214 TIFFDAVG-------G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred cEEEECCC-------c--HHHHHHHHhhCCCCEEEEEE
Confidence 98885322 1 22344577789999988764
No 436
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=64.63 E-value=84 Score=26.52 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=40.0
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C---
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 226 (284)
+.++|=.|++.|. ++..+++++. +|+.+|.++...+ ..+.+... ...+.++.+|+.+.. .
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~-~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHE-VAAELRAA-------GGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHH-HHHHHHhc-------CCeEEEEEEeCCCHHHHHHHHHHH
Confidence 4578877865543 3333444555 5999998764322 22222211 234667778887642 0
Q ss_pred --CCCceeEEEecc
Q 023288 227 --ETGRYDVIWVQW 238 (284)
Q Consensus 227 --~~~~fD~Iv~~~ 238 (284)
.-+.+|+++.+.
T Consensus 79 ~~~~~~id~lv~nA 92 (260)
T PRK12823 79 VEAFGRIDVLINNV 92 (260)
T ss_pred HHHcCCCeEEEECC
Confidence 014689988654
No 437
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=64.62 E-value=64 Score=27.94 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|+-.|| +.|..+..+++....++++++.+ ...+.+++. .... -+.....+........+.+|
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~-g~~~--------~~~~~~~~~~~~~~~~~~~d 210 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSL-GADE--------VIDYTTEDFVALTAGGEKYD 210 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHc-CCCE--------eecCCCCCcchhccCCCCCc
Confidence 446789999997 46777777776655578888754 566666432 1100 00000011100011234689
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.+..- ........+. .|+++|.++..
T Consensus 211 ~vi~~~~~------~~~~~~~~~~-~l~~~g~~i~~ 239 (319)
T cd08267 211 VIFDAVGN------SPFSLYRASL-ALKPGGRYVSV 239 (319)
T ss_pred EEEECCCc------hHHHHHHhhh-ccCCCCEEEEe
Confidence 99864321 1112222222 39999999875
No 438
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=64.44 E-value=89 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
..++.+||=.|+ +.|..+..+++....++++++.++...+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 456778988886 46666676776655568889999999998876
No 439
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.85 E-value=78 Score=27.39 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=58.5
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (284)
..++.+||=.|+ +.|..+..+++....+|+++..++...+.+++. ... .+-....++.+ + .. ...
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~i~~~-~~~ 208 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL-GAD---------EVVIDDGAIAEQLRAA-PGG 208 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCc---------EEEecCccHHHHHHHh-CCC
Confidence 346678888885 577777777776656799999998887777542 110 00000001000 0 01 246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+.+.. . ..+..+.+.|+++|.++..-
T Consensus 209 ~d~vl~~~~-------~--~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 209 FDKVLELVG-------T--ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ceEEEECCC-------h--HHHHHHHHHhccCCEEEEEc
Confidence 899885432 2 35677789999999988753
No 440
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.80 E-value=92 Score=26.87 Aligned_cols=89 Identities=21% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+|+=.|+ +.|..+..+++....++++++.++...+.+++ +... ... .+..++ .++.+|++
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~-----------~~~-~~~~~~--~~~~~d~v 196 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGAA-----------EVV-VGGSEL--SGAPVDLV 196 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc-----------EEE-eccccc--cCCCceEE
Confidence 4678888887 46666666666655579999988888888876 3220 011 011111 12468998
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.+-. . ..+....+.|+++|.++..-
T Consensus 197 l~~~g-------~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 197 VDSVG-------G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred EECCC-------c--HHHHHHHHHhcCCCEEEEEe
Confidence 85422 1 34677888999999988763
No 441
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=63.72 E-value=82 Score=27.46 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=55.2
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||-.|++ .|.....++.....+++.++.++...+.++..... ..++....+. ... ...
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGAD---------YVIDYRKEDFVREVREL-TGK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC---------eEEecCChHHHHHHHHH-hCC
Confidence 4466788888864 56666666665555799999998877776542110 0010000000 000 112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+++.+.. . ..+..+.+.++++|.++..
T Consensus 234 ~~~d~~i~~~g-------~--~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVG-------A--ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCc-------H--HHHHHHHHHhhcCCEEEEE
Confidence 46898886533 1 3456677788999988875
No 442
>PRK10083 putative oxidoreductase; Provisional
Probab=63.68 E-value=35 Score=30.30 Aligned_cols=98 Identities=23% Similarity=0.208 Sum_probs=55.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~ 230 (284)
..++.+||=.|+| .|..+..+++. +...++++|.++.-.+.+++.-... -+.....++.+ +.-....
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW---------VINNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE---------EecCccccHHHHHhcCCCC
Confidence 4567788888865 34444545552 4446888999998888887643210 01111111100 0101123
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+.... . . ..+....+.|+++|.++...
T Consensus 229 ~d~vid~~g-----~-~--~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAAC-----H-P--SILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECCC-----C-H--HHHHHHHHHhhcCCEEEEEc
Confidence 567664322 0 1 46777888999999998864
No 443
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=63.68 E-value=89 Score=26.80 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-----C-C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~ 226 (284)
..++.+||=.|+ +.|..+..+++.....+++++.++...+.+++. ... .++...-..+ . .
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~-----------~~~~~~~~~~~~~~~~~~ 201 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAA-GAD-----------HVINYRDEDFVERVREIT 201 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHC-CCC-----------EEEeCCchhHHHHHHHHc
Confidence 446778888884 467777777766556799999998888887542 210 1111110010 0 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
....+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 202 ~~~~~d~vl~~~~-------~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 202 GGRGVDVVYDGVG-------K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred CCCCeeEEEECCC-------c--HhHHHHHHhhccCcEEEEE
Confidence 2246899985432 1 3456677889999998865
No 444
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=63.43 E-value=55 Score=29.10 Aligned_cols=96 Identities=18% Similarity=0.059 Sum_probs=54.3
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||=.||| .|..+..+++....++++++.++...+.+++.... .-+.....+... ...+.+|+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~--~~~~~~d~ 235 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGAD---------EFIATKDPEAMK--KAAGSLDL 235 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc---------EEecCcchhhhh--hccCCceE
Confidence 3456677767763 45555555555444799999998888888543211 000000001100 01246898
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+.+..- . ..+..+.+.|+++|.++..-
T Consensus 236 v~~~~g~------~--~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------S--HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------c--chHHHHHHHhcCCCEEEEEe
Confidence 8843321 1 24566788899999988763
No 445
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.31 E-value=81 Score=27.95 Aligned_cols=92 Identities=18% Similarity=0.091 Sum_probs=53.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC---C-CCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---~-~~~~ 228 (284)
..++.+||=.|+ +.|..+..+++....++++++.+. ..+.+++. .. . .+...+-.. . ....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~-g~----------~-~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRAL-GA----------D-TVILRDAPLLADAKALGG 241 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhc-CC----------e-EEEeCCCccHHHHHhhCC
Confidence 456788998887 466666666766555688887554 56666432 11 0 111111000 0 0122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 242 ~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 242 EPVDVVADVVG-------G--PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCcEEEecCC-------H--HHHHHHHHHhccCCEEEEe
Confidence 46899885433 1 3566778899999998865
No 446
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=63.11 E-value=87 Score=27.79 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=55.6
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCCCc
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETGR 230 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~ 230 (284)
++.+||-.|+|. |..+..+++.... .+++++.++...+.+++.-.. .-+.....+. ..+ .....
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~---------~~~~~~~~~~~~~~~~~-~~~~~ 232 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT---------RAVNVAKEDLRDVMAEL-GMTEG 232 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc---------EEecCccccHHHHHHHh-cCCCC
Confidence 566777777653 5666666665444 588888888888777654211 0000001111 011 11246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+.+..- . ..+..+.+.|+++|.++...
T Consensus 233 ~d~v~d~~g~------~--~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 233 FDVGLEMSGA------P--SAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCEEEECCCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 8988863220 1 46677888999999998874
No 447
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=63.00 E-value=80 Score=28.43 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc---C----CCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~---d----~~~~~ 225 (284)
..++.+||-.|+| .|..+..+++.... .|++++.++...+.+++. .. ..++.. + +..+
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~-g~-----------~~vv~~~~~~~~~~l~~~- 246 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF-GA-----------THTVNASEDDAVEAVRDL- 246 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh-CC-----------eEEeCCCCccHHHHHHHH-
Confidence 4567788888875 46666666665544 499999998888877542 11 011111 1 1111
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+...+|+|+....- ...+..+.+.|+++|.++...
T Consensus 247 ~~~~~vd~vld~~~~--------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 247 TDGRGADYAFEAVGR--------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCCCCCCEEEEcCCC--------hHHHHHHHHHhhcCCeEEEEe
Confidence 113468988743321 145677888999999988753
No 448
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=62.59 E-value=32 Score=26.71 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCceEEEeeccc-c-HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHc
Q 023288 157 QHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (284)
Q Consensus 157 ~~~~VLDiGcGt-G-~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~ 200 (284)
++.+|+-+|||. | ..+..+...+...++.+|.++.-.+...+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 457899999973 2 2333333333457999999987766654443
No 449
>PRK07109 short chain dehydrogenase; Provisional
Probab=62.32 E-value=60 Score=29.12 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=44.2
Q ss_pred CceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-C-------
Q 023288 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P------- 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~------- 226 (284)
+.+||=.|++.|. ++..+++.+. +|+.++-++.-++...+.+... ..++.++.+|+.+.. .
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~-------g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAA-------GGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 4567777765443 2233344454 5999999887777665554322 234667788887642 0
Q ss_pred --CCCceeEEEecch
Q 023288 227 --ETGRYDVIWVQWC 239 (284)
Q Consensus 227 --~~~~fD~Iv~~~~ 239 (284)
.-+.+|++|.+-.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 0146899886543
No 450
>PRK06701 short chain dehydrogenase; Provisional
Probab=62.11 E-value=49 Score=28.91 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHH-HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~-~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
++.+||-.|++.|. ++..+++.+. +|+.++.++. .++.....+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE-------GVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHH
Confidence 34678888865543 2333444444 5888877642 233333333221 234667888887642 11
Q ss_pred -----CCceeEEEecchhcc-------CChhh-----------HHHHHHHHHhcCCCCcEEEEE
Q 023288 228 -----TGRYDVIWVQWCIGH-------LTDDD-----------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l~~-------~~~~~-----------~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+.+|+||.+..... .+.++ ...+++.+.+.++++|.+++.
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 136788885543211 11111 223444555666777877765
No 451
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.93 E-value=84 Score=28.00 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=54.3
Q ss_pred eEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+|.=||||. |. ++..|.+.+ .+|+.++.+++.++..++.-.... +.......++.+. .|..+. . .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~-~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-L-SDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-H-hCCCCEEEE
Confidence 467789883 33 444444334 459999998887776665321110 0000011112221 122111 0 135788775
Q ss_pred cchhccCChhhHHHHHHHHHh-cCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r-~LkpGG~lii~e~ 270 (284)
.-- ...+..+++++.. .++++..+++.-+
T Consensus 78 avk-----s~~~~~~l~~l~~~~l~~~~~vv~~~n 107 (326)
T PRK14620 78 AVP-----TQQLRTICQQLQDCHLKKNTPILICSK 107 (326)
T ss_pred EeC-----HHHHHHHHHHHHHhcCCCCCEEEEEEc
Confidence 433 3456688888887 8888876665544
No 452
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=61.64 E-value=85 Score=29.01 Aligned_cols=99 Identities=9% Similarity=-0.031 Sum_probs=59.8
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecch
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC 239 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~ 239 (284)
+||=++=..|.++..++...+. ...| |--.-...+.++...++. ...+++. +..+ ++ ++.+|+|+....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~----~~~~~~~--~~~~-~~-~~~~d~vl~~~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGID----ESSVKFL--DSTA-DY-PQQPGVVLIKVP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCC----cccceee--cccc-cc-cCCCCEEEEEeC
Confidence 7999999999999988843332 2234 222233344555554431 1123333 2222 12 246999887654
Q ss_pred hccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 240 IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 240 l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
=. ...+...+..+.++|.||+.+++.++..
T Consensus 116 K~---~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 116 KT---LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred CC---HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 21 1246678899999999999998877643
No 453
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=61.54 E-value=1e+02 Score=26.91 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=57.6
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCC-C--CCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQD-F--TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~-~--~~~~ 228 (284)
..++.+||=.|+ +.|..+..+++.....++.+..++...+.+++ +... .-+.....+ ... + ....
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--------~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAAI--------ILIRYPDEEGFAPKVKKLTGE 208 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc--------EEEecCChhHHHHHHHHHhCC
Confidence 446678888874 57777777777655567778889988888854 2210 001110111 000 0 0122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 209 ~~~d~~i~~~~-------~--~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 209 KGVNLVLDCVG-------G--SYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCceEEEECCc-------h--HHHHHHHHHhccCCeEEEE
Confidence 46899985432 1 4667788889999998865
No 454
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.27 E-value=40 Score=29.97 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=54.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||=.|+| .|..+..+++... ..+++++.++...+.+++.... .-+.....+. ..+ ...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~i~~~-~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGAT---------HTVNSAKGDAIEQVLEL-TDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------ceeccccccHHHHHHHH-hCC
Confidence 3456777766664 3334444555544 4688999988887777653211 0011111111 111 122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+|+.+- .. . ..+..+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~-----g~-~--~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 234 RGVDVVIEAV-----GI-P--ATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCEEEECC-----CC-H--HHHHHHHHhccCCcEEEEe
Confidence 3689988543 11 1 3567788999999998864
No 455
>PRK08655 prephenate dehydrogenase; Provisional
Probab=61.18 E-value=33 Score=32.32 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=44.2
Q ss_pred eEEEee-cc-ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 160 VALDCG-SG-IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiG-cG-tG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+|.=+| +| .|. ++..+...+. +|+++|.++........... +.+ ..+..+. -...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~g------------v~~-~~~~~e~---~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELG------------VEY-ANDNIDA---AKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcC------------Cee-ccCHHHH---hccCCEEEE
Confidence 466676 45 443 3343333344 59999998776533222211 111 1111111 134688876
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+-... ....+++++...++||..++
T Consensus 65 avp~~-----~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 65 SVPIN-----VTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ecCHH-----HHHHHHHHHHhhCCCCCEEE
Confidence 55432 33467777777787776443
No 456
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=60.79 E-value=15 Score=33.87 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=27.9
Q ss_pred eEEEeeccc-cH--HHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023288 160 VALDCGSGI-GR--ITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (284)
Q Consensus 160 ~VLDiGcGt-G~--~s~~l~~~~~~~v~gvD~S~~~l~~ar~~ 199 (284)
+|+=+|+|. |+ +...+.+.+ ..|+++|..+.+++..+++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~q 43 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKR 43 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcC
Confidence 688899883 43 455444344 4699999988888888776
No 457
>PRK07985 oxidoreductase; Provisional
Probab=60.25 E-value=81 Score=27.59 Aligned_cols=104 Identities=14% Similarity=0.068 Sum_probs=55.0
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCC--HHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S--~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
++.++|-.|++.|. ++..|++.+. +|+.++.+ ...++...+..... ..++.++.+|+.+..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~ 119 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEEC-------GRKAVLLPGDLSDEKFARSLV 119 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHc-------CCeEEEEEccCCCHHHHHHHH
Confidence 34678888865442 3344444555 48777643 23333333332221 234667788887632
Q ss_pred ----CCCCceeEEEecchh-------ccCChhhH-----------HHHHHHHHhcCCCCcEEEEE
Q 023288 226 ----PETGRYDVIWVQWCI-------GHLTDDDF-----------VSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ----~~~~~fD~Iv~~~~l-------~~~~~~~~-----------~~~l~~~~r~LkpGG~lii~ 268 (284)
..-+..|+++.+... ..++.+++ ..+++.+.+.++.+|.+++.
T Consensus 120 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 120 HEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 011457888865432 22333332 23455666667778877774
No 458
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.18 E-value=62 Score=28.26 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=50.3
Q ss_pred eEEEeeccc--cHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~---~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
+|.=||||. +.++..+.+.+. .+|++.|.++.-++.+.+... +.. ..+..+.. ...|+|
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g------------~~~-~~~~~e~~---~~aDiI 67 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG------------ITI-TTNNNEVA---NSADIL 67 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC------------cEE-eCCcHHHH---hhCCEE
Confidence 577788884 334444444442 269999999887776654321 111 12222211 245888
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+.+-- +..+..+++++...++++ .+++
T Consensus 68 iLavk-----P~~~~~vl~~l~~~~~~~-~lvI 94 (272)
T PRK12491 68 ILSIK-----PDLYSSVINQIKDQIKND-VIVV 94 (272)
T ss_pred EEEeC-----hHHHHHHHHHHHHhhcCC-cEEE
Confidence 76544 346678888888877765 4444
No 459
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=60.03 E-value=43 Score=28.38 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=40.0
Q ss_pred eEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeE
Q 023288 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (284)
Q Consensus 160 ~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~ 233 (284)
+++=+|||. |. .+..|. .....|+.+|.++.-++..... ......+++|.++.. ..-..+|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~-~~g~~Vv~Id~d~~~~~~~~~~-----------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS-EEGHNVVLIDRDEERVEEFLAD-----------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHH-hCCCceEEEEcCHHHHHHHhhh-----------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 567788873 33 333333 4434599999999887763331 122566777776642 23357888
Q ss_pred EEec
Q 023288 234 IWVQ 237 (284)
Q Consensus 234 Iv~~ 237 (284)
+++.
T Consensus 70 vva~ 73 (225)
T COG0569 70 VVAA 73 (225)
T ss_pred EEEe
Confidence 8854
No 460
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.02 E-value=23 Score=28.20 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=47.4
Q ss_pred eEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|-=||+|. ..++..|++.++ +|++.|.+++-.+...+.. + ....+..++. ...|+|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g-------------~-~~~~s~~e~~---~~~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG-------------A-EVADSPAEAA---EQADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT-------------E-EEESSHHHHH---HHBSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh-------------h-hhhhhhhhHh---hcccceEee
Confidence 455567762 233444554566 4999999998877766541 1 1122222211 245888865
Q ss_pred chhccCChhhHHHHHHH--HHhcCCCCcEEEEE
Q 023288 238 WCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLK 268 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~--~~r~LkpGG~lii~ 268 (284)
-. +++....++.. +...|++|..++-.
T Consensus 65 v~----~~~~v~~v~~~~~i~~~l~~g~iiid~ 93 (163)
T PF03446_consen 65 VP----DDDAVEAVLFGENILAGLRPGKIIIDM 93 (163)
T ss_dssp SS----SHHHHHHHHHCTTHGGGS-TTEEEEE-
T ss_pred cc----cchhhhhhhhhhHHhhccccceEEEec
Confidence 43 12346677777 78888887776643
No 461
>PRK07680 late competence protein ComER; Validated
Probab=59.35 E-value=51 Score=28.64 Aligned_cols=87 Identities=10% Similarity=0.105 Sum_probs=50.4
Q ss_pred eEEEeeccc--cHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~---~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
+|.=||||. +.++..+.+.+. ..++++|.++...+...+... .+.. ..+..+.. ...|+|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----------g~~~-~~~~~~~~---~~aDiV 66 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----------GIHV-AKTIEEVI---SQSDLI 66 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----------CeEE-ECCHHHHH---HhCCEE
Confidence 466688875 334555554542 368999999877665544321 1221 12222211 256888
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+.+- ++.....+++.+...++++..++
T Consensus 67 ilav-----~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 67 FICV-----KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred EEec-----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 7654 34456778888888888876444
No 462
>PRK06484 short chain dehydrogenase; Validated
Probab=59.29 E-value=69 Score=30.50 Aligned_cols=72 Identities=19% Similarity=0.101 Sum_probs=44.2
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (284)
++..+|=.|++.|. ++..+++.+. +|+.++.++.-++...+... .++.++.+|+.+.. +
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG----------PDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEeccCCHHHHHHHHHH
Confidence 45678877877662 3344444454 59999988877766555432 23556778877532 0
Q ss_pred ---CCCceeEEEecch
Q 023288 227 ---ETGRYDVIWVQWC 239 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~ 239 (284)
.-+..|++|.+..
T Consensus 73 ~~~~~g~iD~li~nag 88 (520)
T PRK06484 73 LHREFGRIDVLVNNAG 88 (520)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1146899887653
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=59.11 E-value=92 Score=27.51 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=52.8
Q ss_pred eEEEeeccc-c-HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCC-CCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGt-G-~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+|.=||+|. | .++..+++.+. +|+.+|.++..++..++...... ........++.. ..+..+. ....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 567778772 2 33444444444 59999999988887765421100 000000001111 1121111 135788886
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+-.- .....++..+...++|+..++..-
T Consensus 78 ~v~~-----~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 78 AVPS-----QALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred eCCH-----HHHHHHHHHHHhhcCCCCEEEEEe
Confidence 6542 245678888888888877655443
No 464
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.64 E-value=56 Score=29.08 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 156 NQHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
-.+..||==|.|.|. ++..+++++. .+...|+++...+...+.+...| .+..+.+|+.+..
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--------ceeEEEecCCCHHHHHHHHH
Confidence 356788888888774 4556666666 59999999988887777765432 4678888887642
Q ss_pred ---CCCCceeEEEecc
Q 023288 226 ---PETGRYDVIWVQW 238 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~ 238 (284)
-+-+..|++|.+.
T Consensus 107 ~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNA 122 (300)
T ss_pred HHHHhcCCceEEEecc
Confidence 2336789988664
No 465
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=57.87 E-value=45 Score=29.23 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=55.4
Q ss_pred CceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+.+||=.|+ +.|..+..+++....+++.++.++...+.+++. ...... ... +.....+..+ ....+|+|+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~v~----~~~-~~~~~~~~~~--~~~~~d~vl 218 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL-GAKEVI----PRE-ELQEESIKPL--EKQRWAGAV 218 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc-CCCEEE----cch-hHHHHHHHhh--ccCCcCEEE
Confidence 468888886 456666667766555799999999888888553 210000 000 0000011111 124588887
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+.. . ..+....+.|+++|.++..-
T Consensus 219 d~~g-------~--~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 219 DPVG-------G--KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ECCc-------H--HHHHHHHHHhhcCCEEEEEe
Confidence 4322 2 35667888899999998863
No 466
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=57.83 E-value=1e+02 Score=26.83 Aligned_cols=93 Identities=11% Similarity=-0.041 Sum_probs=55.5
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||=.|+ +.|..+..+++.....++.+.-+....+.+++. .. -.++...-.++. .
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~-----------~~~~~~~~~~~~~~i~~~~ 204 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL-GI-----------GPVVSTEQPGWQDKVREAA 204 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc-CC-----------CEEEcCCCchHHHHHHHHh
Confidence 456778888775 367777777776666677777777777766552 11 011111100100 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
....+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 205 ~~~~~d~v~d~~g-------~--~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 205 GGAPISVALDSVG-------G--KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred CCCCCcEEEECCC-------C--hhHHHHHHhhcCCcEEEEE
Confidence 1236899885322 1 2446778899999999875
No 467
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.42 E-value=56 Score=29.54 Aligned_cols=99 Identities=15% Similarity=0.004 Sum_probs=58.6
Q ss_pred CCCCceEEEeec-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE-EcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGS-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGc-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~fD 232 (284)
..++.+|-=+|. |-|.++..+++.+.-+|+++|-|..--+.+-+.+....+ +.+. ..|.-.- . .+..|
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~f--------v~~~~d~d~~~~-~-~~~~d 248 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVF--------VDSTEDPDIMKA-I-MKTTD 248 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCccee--------EEecCCHHHHHH-H-HHhhc
Confidence 446677666664 489999999988877899999998777777776654211 1111 1111100 0 12344
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.++-.-+ .+. + ..+..+.+.||++|.+++.-
T Consensus 249 g~~~~v~--~~a--~--~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 249 GGIDTVS--NLA--E--HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred Ccceeee--ecc--c--cchHHHHHHhhcCCEEEEEe
Confidence 4331111 001 1 45666778999999999974
No 468
>PRK07806 short chain dehydrogenase; Provisional
Probab=57.15 E-value=72 Score=26.68 Aligned_cols=103 Identities=17% Similarity=0.031 Sum_probs=52.0
Q ss_pred CceEEEeecccc--H-HHHHHHHhCCCcEEEEeCCH-HHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023288 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (284)
Q Consensus 158 ~~~VLDiGcGtG--~-~s~~l~~~~~~~v~gvD~S~-~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (284)
+.++|-.|+..| . +...+++.+. +|++++-+. ..++......... ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA-------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHH
Confidence 467888886433 2 2223333444 588877653 2333333222211 124567778887642 00
Q ss_pred ----CCceeEEEecchhccCCh---h--------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 228 ----TGRYDVIWVQWCIGHLTD---D--------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 ----~~~fD~Iv~~~~l~~~~~---~--------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+..|+|+.+........ . -...+++.+.+.++.+|.+++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 135788775543211100 0 1335667777777767766664
No 469
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.03 E-value=42 Score=30.27 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=55.5
Q ss_pred CCCCceEEEeeccccHHHHHHHH--hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCC----C--C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD----F--T 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~--~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~----~--~ 225 (284)
..++.++.-+|+|.=.++...-. ++.++++|||+++.-.+.|++.-... ++.. |..+ . .
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe------------~iNp~d~~~~i~evi~E 257 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE------------FINPKDLKKPIQEVIIE 257 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce------------ecChhhccccHHHHHHH
Confidence 45677788888875444433322 46669999999999999998764321 1111 2222 0 0
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~ 268 (284)
..++.+|.-+- .+.. ...++++....+.| |.-++.
T Consensus 258 mTdgGvDysfE-----c~G~---~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 258 MTDGGVDYSFE-----CIGN---VSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HhcCCceEEEE-----ecCC---HHHHHHHHHHhhcCCCeEEEE
Confidence 22356665542 1211 25667777777888 877665
No 470
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.59 E-value=75 Score=27.15 Aligned_cols=102 Identities=16% Similarity=-0.004 Sum_probs=51.1
Q ss_pred CceEEEeec-cccHH----HHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 158 HLVALDCGS-GIGRI----TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 158 ~~~VLDiGc-GtG~~----s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
+.++|=.|+ |++.+ +..+++.+. +|+.++......+..++.....+ ...++.+|+.+..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--------SDLVFPCDVASDEQIDALFA 76 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcC--------CcceeeccCCCHHHHHHHHH
Confidence 467888886 33333 333444455 47777543222222222211111 1224567776542
Q ss_pred ---CCCCceeEEEecchhc-----------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023288 226 ---PETGRYDVIWVQWCIG-----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l~-----------~~~~~~~~~-----------~l~~~~r~LkpGG~lii~ 268 (284)
-.-+.+|+++.+-.+. .++.+++.. +.+.+...|+.+|.+++.
T Consensus 77 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~i 144 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL 144 (260)
T ss_pred HHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEE
Confidence 0125789988765332 233344433 245666777777876664
No 471
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.36 E-value=24 Score=32.60 Aligned_cols=112 Identities=14% Similarity=0.018 Sum_probs=67.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcC-------CCCCCCCCCCcceeEEEcCCCCCC
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFT 225 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~ 225 (284)
..++.....|+|.|.|.+...++.-.. ..-+|++++..--+.+..+.. ..|- ....++.+.+++.+-.
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk----~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK----KPNKIETIHGSFLDPK 264 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC----CcCceeecccccCCHH
Confidence 366788899999999999887665322 255666665443333322211 1110 0223556666665422
Q ss_pred ---CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.-....++|+++.+.- ++++..=+.++..-+++|-+++=.+...
T Consensus 265 ~v~eI~~eatvi~vNN~~F---dp~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNVAF---DPELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HHHHHhhcceEEEEecccC---CHHHHHhhHHHHhhCCCcceEecccccc
Confidence 1124678899888742 2355555668889999999888776543
No 472
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=56.35 E-value=1.6e+02 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred eEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHc
Q 023288 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (284)
Q Consensus 160 ~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~ 200 (284)
+|-=||.| -|.-+..++..++ +|+++|+++.-++..++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~ 42 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRI 42 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCC
Confidence 35556777 4444444444554 5999999999999887643
No 473
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=55.91 E-value=18 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=23.6
Q ss_pred CceEEEeeccc-cH-HHHHHHHhCCCcEEEEeCC
Q 023288 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPV 189 (284)
Q Consensus 158 ~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S 189 (284)
..+||=+|||. |. .+..|+..++.+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999993 44 4555565677789999976
No 474
>PLN02688 pyrroline-5-carboxylate reductase
Probab=55.51 E-value=64 Score=27.74 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=48.8
Q ss_pred eEEEeeccc--cHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 160 VALDCGSGI--GRITKNLLIRYF---NEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~---~~v~gv-D~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
+|.=||||. +.++..+++.++ .+++++ |.++...+.+.+. | +.. ..+..+. -...|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~----g---------~~~-~~~~~e~---~~~aDv 64 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL----G---------VKT-AASNTEV---VKSSDV 64 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc----C---------CEE-eCChHHH---HhcCCE
Confidence 466678884 345555665554 258888 8888776655431 1 111 1222211 124688
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
|+.+-- ++....++..+...++||..++
T Consensus 65 Vil~v~-----~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAVK-----PQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEEC-----cHHHHHHHHHHHhhcCCCCEEE
Confidence 886552 3456678888877777776544
No 475
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.06 E-value=1.1e+02 Score=27.46 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=65.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CC--cEEEEeCCHHHHHHHHHHcCCCC------CCCCC-C--------CcceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPEN------HMAPD-M--------HKATNFF 217 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~--~v~gvD~S~~~l~~ar~~~~~~~------~~~~~-~--------~~~~~~~ 217 (284)
.....|+.+|||.-.....+...+ .. .++=||.++........+..... ....+ . ..+-..+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 456789999999999988888766 22 56777777666555521111110 00000 0 0122233
Q ss_pred EcCCCCCC----------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 218 CVPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 218 ~~d~~~~~----------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
-+|+.++. ...+-.-++++--++.+++++.-..+++.+...-. .+.+++.|.+.+
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~ 230 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINP 230 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCC
Confidence 34444321 00112233445567889988887788888887654 455666676543
No 476
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=54.68 E-value=1.5e+02 Score=26.74 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--C----CCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--P----LQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d----~~~~~~ 226 (284)
..++.+||=.|+| .|..+..+++.... .+++++.++...+.+++. ..... +..... + +.++.
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~~--------v~~~~~~~~~~~~l~~~~- 250 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GATEC--------INPRDQDKPIVEVLTEMT- 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCCee--------cccccccchHHHHHHHHh-
Confidence 4567788888764 34444445544333 588999899888888553 21100 111111 1 11111
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCC-CCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK-PGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lk-pGG~lii~e 269 (284)
. +.+|+|+.... . ...+..+.+.|+ ++|.++...
T Consensus 251 ~-~~~d~vid~~g-----~---~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 D-GGVDYAFEVIG-----S---ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred C-CCCcEEEECCC-----C---HHHHHHHHHHhccCCCEEEEEe
Confidence 2 46898885421 1 146677888899 999998764
No 477
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=54.60 E-value=1.2e+02 Score=27.68 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=32.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
..++.+||=.|+ +.|..+..+++....+++.++.++...+.+++
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~ 232 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRE 232 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 456678988887 46667776776655568888888888888876
No 478
>PLN00203 glutamyl-tRNA reductase
Probab=54.32 E-value=55 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCceEEEeeccc-cHH-HHHHHHhCCCcEEEEeCCHHHHHHHHHHc
Q 023288 157 QHLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~-s~~l~~~~~~~v~gvD~S~~~l~~ar~~~ 200 (284)
.+.+|+=||+|. |.. ...+...+..+|+.++.++.-.+...+.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 367899999962 222 23333345557999999987776665554
No 479
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=54.28 E-value=47 Score=26.87 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.1
Q ss_pred eEEEeecc-ccH-HHHHHHHhCCCcEEEEeCCH
Q 023288 160 VALDCGSG-IGR-ITKNLLIRYFNEVDLLEPVS 190 (284)
Q Consensus 160 ~VLDiGcG-tG~-~s~~l~~~~~~~v~gvD~S~ 190 (284)
+|+=+||| .|. .+..++..+..+++.+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47889998 354 45555666777899998775
No 480
>PRK12937 short chain dehydrogenase; Provisional
Probab=54.04 E-value=1.3e+02 Score=25.01 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=51.8
Q ss_pred CCceEEEeeccccHHHHHH----HHhCCCcEEEEeCC-HHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023288 157 QHLVALDCGSGIGRITKNL----LIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l----~~~~~~~v~gvD~S-~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (284)
++.+||=.|++.| ++..+ ++++. +++.+.-+ +...+...+..... ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItG~~~~-iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~ 74 (245)
T PRK12937 4 SNKVAIVTGASRG-IGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAA-------GGRAIAVQADVADAAAVTRLF 74 (245)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHH
Confidence 3457887887433 33333 33444 46655433 32223222222211 234677888887632 0
Q ss_pred C-----CCceeEEEecchhc------cCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 227 E-----TGRYDVIWVQWCIG------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~-----~~~fD~Iv~~~~l~------~~~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
. -+..|+|+.+.... ..+.+++. .+++.+.+.++++|.+++.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 138 (245)
T PRK12937 75 DAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINL 138 (245)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEE
Confidence 0 13578888654322 22222221 2345566667778887776
No 481
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.02 E-value=1.3e+02 Score=25.80 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=53.4
Q ss_pred CceEEEeeccc----cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 158 ~~~VLDiGcGt----G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
+..+|-.|++. |. ++..|++.+. +|+.++.+....+..++.....+ . ..++.+|+.+..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-------~-~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-------S-DFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-------C-ceEEeCCCCCHHHHHHHHH
Confidence 45788888754 33 3444454555 58888766543333333222111 1 235677887642
Q ss_pred ---CCCCceeEEEecchhc----------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023288 226 ---PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l~----------~~~~~~~~~-----------~l~~~~r~LkpGG~lii~ 268 (284)
-.-+..|++|.+-.+. .++.+++.. +.+.+...++.+|.++..
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~i 144 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTL 144 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEE
Confidence 0125789988765432 223333332 234455666667877654
No 482
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.93 E-value=1.4e+02 Score=25.32 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=54.6
Q ss_pred CCceEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023288 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (284)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (284)
.+..+|-.|.+ .|. ++..|++.+. +|+.++.+....+..++.. . ..+.++.+|+.+.. +
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~-~---------~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV-D---------EEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc-c---------CceeEEeCCCCCHHHHHHHH
Confidence 34678888875 333 3344444455 5888877644333333221 1 23567788887642 0
Q ss_pred -----CCCceeEEEecchhcc----------CChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 227 -----ETGRYDVIWVQWCIGH----------LTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 -----~~~~fD~Iv~~~~l~~----------~~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
.-+++|+++.+..+.. ++.+++. .+.+.+...++.+|.+++.
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~i 142 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTL 142 (252)
T ss_pred HHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEE
Confidence 1157899887654321 2322222 2345556677778877664
No 483
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.91 E-value=1.6e+02 Score=26.03 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||=.|+| .|..+..+++....+++.+..++.-.+.+++ +... .-+.....+. ... .+.
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--------~v~~~~~~~~~~~~~~~-~~~ 232 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-LGAD--------AFVDFKKSDDVEAVKEL-TGG 232 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCc--------EEEcCCCccHHHHHHHH-hcC
Confidence 4567788888875 6777777777766679999999887777743 2210 0011110011 001 122
Q ss_pred CceeEEEe-cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWV-QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~-~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+|+|+. ... . ..+..+.+.|+++|.++..
T Consensus 233 ~~vd~vl~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 233 GGAHAVVVTAVS-------A--AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCEEEEcCCc-------h--HHHHHHHHHhhcCCEEEEe
Confidence 46898884 322 1 4567778889999999876
No 484
>PRK06484 short chain dehydrogenase; Validated
Probab=53.76 E-value=1.4e+02 Score=28.48 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C--
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-- 226 (284)
.+..+|=.|++.|. ++..+++.+. +|+.++.++.-++...+... .....+.+|+.+.. +
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG----------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEccCCCHHHHHHHHHH
Confidence 45677877776552 3334444555 59999998877776665442 12445677776642 1
Q ss_pred ---CCCceeEEEecchhc-------cCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 227 ---ETGRYDVIWVQWCIG-------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~-------~~~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
.-+..|++|.+-... ..+.+++. .+.+.+...++.+|.+++.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 115689998654321 22222222 2245555666777887775
No 485
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=53.75 E-value=41 Score=30.33 Aligned_cols=75 Identities=19% Similarity=0.073 Sum_probs=46.7
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC------CC-CCCCcee
Q 023288 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD------FT-PETGRYD 232 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~------~~-~~~~~fD 232 (284)
-+|||.|+-.+-..+-.+... ...++|+.....+.|+++....++. ..+..+.....+ +. .++..||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 579988876655433333332 6899999999999999998887663 333333331111 11 1134699
Q ss_pred EEEecchh
Q 023288 233 VIWVQWCI 240 (284)
Q Consensus 233 ~Iv~~~~l 240 (284)
.+.|+..|
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99988754
No 486
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=53.49 E-value=1.3e+02 Score=26.84 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred eEEEeeccc-cHHHHHH-HHhCC-CcEEEEeCCHHHHH-HHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 160 VALDCGSGI-GRITKNL-LIRYF-NEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 160 ~VLDiGcGt-G~~s~~l-~~~~~-~~v~gvD~S~~~l~-~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+|.=||+|. |...... +..+. .++..+|.++...+ .+......... .........|.+++ ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-----~~~~~i~~~d~~~l----~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-----VKPVRIYAGDYADC----KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-----cCCeEEeeCCHHHh----CCCCEEE
Confidence 477789985 4433333 33342 47999999887654 33332221111 11122333343321 3468888
Q ss_pred ecchhccCChh-----------hHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDD-----------DFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~-----------~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.......-+.. -+..+.+++.+ ..|.|.+++.-|
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tN 117 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTN 117 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 65443222211 13445555555 458898888744
No 487
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.36 E-value=80 Score=29.39 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=59.1
Q ss_pred HHHHHHhCCC-cEEEEe-CCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----------CCCCceeEEEecch
Q 023288 172 TKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----------PETGRYDVIWVQWC 239 (284)
Q Consensus 172 s~~l~~~~~~-~v~gvD-~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~fD~Iv~~~~ 239 (284)
+.++-++++. -+++-| +-+...+..+.++... ++.|+..--+.-| +..+.||+|++-.+
T Consensus 122 A~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~---------~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 122 AYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA---------RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHhcCCceeEEeecccccchHHHHHHHhHhh---------CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3333344554 345555 5566777777776543 3444443211111 34568999999887
Q ss_pred hccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 240 IGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 240 l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
=.|-.+..+-.-+..+.+.++|+-++++.|...
T Consensus 193 GRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 193 GRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred CchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 777666666677788899999999999988643
No 488
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=53.32 E-value=28 Score=36.56 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=41.6
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCC--------------cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFN--------------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~--------------~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~ 221 (284)
...+|+=|||| .|......+.+... .|+..|+++...+.+.+.. .+++.+..|+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----------~~~~~v~lDv 636 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----------ENAEAVQLDV 636 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----------CCCceEEeec
Confidence 35689999998 46655555544322 2888999876666554433 1234555555
Q ss_pred CCCC-CCC--CceeEEEecc
Q 023288 222 QDFT-PET--GRYDVIWVQW 238 (284)
Q Consensus 222 ~~~~-~~~--~~fD~Iv~~~ 238 (284)
.+.. ... ...|+|++..
T Consensus 637 ~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECC
Confidence 4432 111 2489998653
No 489
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=53.31 E-value=32 Score=28.21 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=48.8
Q ss_pred eEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCC-----CcceeEEE-cCCCCCCCCCCcee
Q 023288 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM-----HKATNFFC-VPLQDFTPETGRYD 232 (284)
Q Consensus 160 ~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~~fD 232 (284)
+|-=+|.| .|..+...+.....+|+|+|+++.-++..++-........... ....++.. .|.... ....|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a---i~~ad 78 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA---IKDAD 78 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH---HHH-S
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh---hhccc
Confidence 46667777 3443333333444469999999998887765322110000000 00011111 121110 12467
Q ss_pred EEEecchhccCCh-----hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 233 VIWVQWCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-----~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++.+-.--.-.+ ..+.++++.+.+.|++|- +++.+...+
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~-lvV~~STvp 123 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGD-LVVIESTVP 123 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCE-EEEESSSSS
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcc-eEEEccEEE
Confidence 7765432111111 126788999999999955 455454433
No 490
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=53.31 E-value=1.2e+02 Score=24.42 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=59.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC---CC--CCCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT--PETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--~~~~~f 231 (284)
...+|+=|||=+-.....-......++..+|+....-.... + .|.--|... ++ + .++|
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~---------------~-~F~fyD~~~p~~~~~~l-~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG---------------D-EFVFYDYNEPEELPEEL-KGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC---------------c-ceEECCCCChhhhhhhc-CCCc
Confidence 45789999998866554320012227999999865433211 1 233333332 11 2 3699
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|++--.+ +..+-+......+.-++|+++.+++.
T Consensus 88 d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 88 DVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 999998887 66555667777788888999988875
No 491
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.58 E-value=1.5e+02 Score=25.54 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=54.7
Q ss_pred CceEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 158 ~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
+..+|=.|++ .|. ++..+++.+. +|+.++.+....+..++.....+ .. .++.+|+.+..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~-------~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELG-------SD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcC-------Cc-eEEEecCCCHHHHHHHHH
Confidence 4578888874 343 3333444555 58888887532233332222111 11 45677887643
Q ss_pred ---CCCCceeEEEecchhc----------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023288 226 ---PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l~----------~~~~~~~~~-----------~l~~~~r~LkpGG~lii~ 268 (284)
-.-+.+|++|.+-.+. ..+.+++.. +.+.+...++.+|.+++.
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~i 142 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTL 142 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEE
Confidence 0125789988765432 122333222 345666677778877765
No 492
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.79 E-value=1.4e+02 Score=25.34 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=54.3
Q ss_pred CceEEEeecc-ccHHHHH----HHHhCCCcEEEEeCCH--HHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----
Q 023288 158 HLVALDCGSG-IGRITKN----LLIRYFNEVDLLEPVS--HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (284)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~----l~~~~~~~v~gvD~S~--~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 225 (284)
+.++|-.|+| ++.++.. +++.+. +|+.++.+. +.++...+... ..+.++.+|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP----------EPAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC----------CCCcEEeCCCCCHHHHHHH
Confidence 4578888983 3333333 333444 588887653 44444433321 13456778887642
Q ss_pred -----CCCCceeEEEecchhcc-------C---ChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 226 -----PETGRYDVIWVQWCIGH-------L---TDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -----~~~~~fD~Iv~~~~l~~-------~---~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
-.-+.+|+++.+..+.. + +.+++. .+.+.+...++++|.+++.
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 01257899887654321 1 122221 2345566777888877664
No 493
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=51.50 E-value=52 Score=33.18 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=59.5
Q ss_pred CCceEEEeecccc--HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC--------CCCCCCCCC---cceeEEEcCCCC
Q 023288 157 QHLVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP--------ENHMAPDMH---KATNFFCVPLQD 223 (284)
Q Consensus 157 ~~~~VLDiGcGtG--~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~--------~~~~~~~~~---~~~~~~~~d~~~ 223 (284)
+-.+|-=||+|+= .++..++..+. .|+.+|.+++.++.+++++.. ..+...... .++++. .|+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 4457888999953 33333455566 499999999999987765431 111000000 112211 12221
Q ss_pred CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 224 ~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
. ...|+|+=+ +++.+. -..++++++.++++|+..|.-
T Consensus 390 --~--~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 390 --F--DNVDIVVEA-VVENPK--VKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred --h--cCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEEEE
Confidence 1 357888754 444433 345899999999999976543
No 494
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.45 E-value=1.4e+02 Score=24.79 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=39.3
Q ss_pred CceEEEeeccccHHHHH----HHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-------
Q 023288 158 HLVALDCGSGIGRITKN----LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~----l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 226 (284)
+.+||=.|++. .++.. +++.+. +|++++.++..++...+... .++.++.+|+.+...
T Consensus 6 ~k~vlItGasg-~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGGTS-GIGLETARQFLAEGA-RVAITGRDPASLEAARAELG----------ESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC----------CceEEEEecCCCHHHHHHHHHH
Confidence 35677677643 33333 343444 59999988766655544432 235667777765320
Q ss_pred ---CCCceeEEEecc
Q 023288 227 ---ETGRYDVIWVQW 238 (284)
Q Consensus 227 ---~~~~fD~Iv~~~ 238 (284)
..+.+|+|+.+.
T Consensus 74 ~~~~~~~id~vi~~a 88 (249)
T PRK06500 74 LAEAFGRLDAVFINA 88 (249)
T ss_pred HHHHhCCCCEEEECC
Confidence 014689888554
No 495
>PLN02256 arogenate dehydrogenase
Probab=51.11 E-value=1.1e+02 Score=27.29 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=45.3
Q ss_pred CCCceEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.+..+|.=||+|. |.++..+.+.+. +|+++|.++. .+.+++. + +.. ..+..+.. ....|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~----g---------v~~-~~~~~e~~--~~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAEL----G---------VSF-FRDPDDFC--EEHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHc----C---------Cee-eCCHHHHh--hCCCCE
Confidence 4567888899873 334444443333 6999999863 2333321 1 111 12221111 124688
Q ss_pred EEecchhccCChhhHHHHHHHH-HhcCCCCc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRA-KVGLKPGG 263 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~-~r~LkpGG 263 (284)
|+.+-.. .....+++++ ...++||.
T Consensus 96 Vilavp~-----~~~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 96 VLLCTSI-----LSTEAVLRSLPLQRLKRST 121 (304)
T ss_pred EEEecCH-----HHHHHHHHhhhhhccCCCC
Confidence 8765432 2445677777 45677765
No 496
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.04 E-value=7.6 Score=32.20 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCCcEEEEE
Q 023288 248 FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 248 ~~~~l~~~~r~LkpGG~lii~ 268 (284)
+...+.++.|+|||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 568999999999999998885
No 497
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=50.64 E-value=40 Score=27.42 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=52.6
Q ss_pred EEEeecccc--HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC--------CCCCCC---CCCcceeEEEcCCCCCCCC
Q 023288 161 ALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP--------ENHMAP---DMHKATNFFCVPLQDFTPE 227 (284)
Q Consensus 161 VLDiGcGtG--~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~--------~~~~~~---~~~~~~~~~~~d~~~~~~~ 227 (284)
|.=||+|+= .++..++..+. +|+.+|.+++.++.+++++.. ..+... ....++. ...|+.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~-- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV-- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC--
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh--
Confidence 555788742 23333443444 699999999999988876543 111000 0001222 234444432
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..|+|+=+-. +.+. -...+++++.+.+.|+-.|.-.
T Consensus 78 --~adlViEai~-E~l~--~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 78 --DADLVIEAIP-EDLE--LKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp --TESEEEE-S--SSHH--HHHHHHHHHHCCS-TTSEEEE-
T ss_pred --hhheehhhcc-ccHH--HHHHHHHHHHHHhCCCceEEec
Confidence 5787774322 2221 3467999999999988876653
No 498
>PRK05875 short chain dehydrogenase; Provisional
Probab=50.58 E-value=1.3e+02 Score=25.56 Aligned_cols=74 Identities=20% Similarity=0.136 Sum_probs=42.0
Q ss_pred CceEEEeeccccHHHHHH----HHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC-
Q 023288 158 HLVALDCGSGIGRITKNL----LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE- 227 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l----~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 227 (284)
+.++|-.|++.| ++..+ ++.+. +|++++-++..++...+.....+. ..++.++.+|+.+.. +.
T Consensus 7 ~k~vlItGasg~-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~ 79 (276)
T PRK05875 7 DRTYLVTGGGSG-IGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKG-----AGAVRYEPADVTDEDQVARAVDA 79 (276)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccC-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 467888886433 33333 33455 599999887665544443322100 134677788887642 11
Q ss_pred ----CCceeEEEecc
Q 023288 228 ----TGRYDVIWVQW 238 (284)
Q Consensus 228 ----~~~fD~Iv~~~ 238 (284)
.+..|+|+.+.
T Consensus 80 ~~~~~~~~d~li~~a 94 (276)
T PRK05875 80 ATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHcCCCCEEEECC
Confidence 13578888654
No 499
>PTZ00117 malate dehydrogenase; Provisional
Probab=50.53 E-value=1.6e+02 Score=26.44 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=55.0
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHH-cCCCCCCCCCCCcceeEEE-cCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFC-VPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~-~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD 232 (284)
+..+|.=+|+|. |.....++.... .++..+|++++..+ +... ..... ........+.. .|.+.+ ...|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~---~~~~~~~~i~~~~d~~~l----~~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFS---TLVGSNINILGTNNYEDI----KDSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhc---cccCCCeEEEeCCCHHHh----CCCC
Confidence 345899999998 776665554433 47999999876543 2211 11100 00011223332 343322 2468
Q ss_pred EEEecchhccCC---h--------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLT---D--------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~---~--------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+......--+ . +-...+.+.+.+. .|.+++++.-|
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsN 123 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 888665322111 1 1244566666665 58897777655
No 500
>PRK12744 short chain dehydrogenase; Provisional
Probab=50.52 E-value=1.5e+02 Score=24.91 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=51.6
Q ss_pred CceEEEeeccccHHHHHHH----HhCCCcEEEEeCC----HHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023288 158 HLVALDCGSGIGRITKNLL----IRYFNEVDLLEPV----SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~----~~~~~~v~gvD~S----~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (284)
+.++|=.|++.| ++..++ +.+. +++.++.+ ...++...+..... ..++.++.+|+.+..
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAA-------GAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHh-------CCcEEEEecCcCCHHHHHH
Confidence 457887786544 444343 3444 45666432 23333332222111 234677888887542
Q ss_pred -C-----CCCceeEEEecchh------ccCChhhHH-----------HHHHHHHhcCCCCcEEEE
Q 023288 226 -P-----ETGRYDVIWVQWCI------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 226 -~-----~~~~fD~Iv~~~~l------~~~~~~~~~-----------~~l~~~~r~LkpGG~lii 267 (284)
+ ..+..|+++.+... ...+.+++. .+++.+.+.++++|.+++
T Consensus 79 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 0 11467988866543 223333222 245666677777776654
Done!