Query 023289
Match_columns 284
No_of_seqs 109 out of 335
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 2E-107 6E-112 749.8 20.0 242 43-284 21-262 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 4E-107 1E-111 746.0 17.0 239 43-281 21-259 (261)
3 2xzm_W 40S ribosomal protein S 100.0 8E-105 3E-109 730.7 25.3 237 43-279 21-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 2.3E-95 8E-100 663.4 20.9 218 43-261 22-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 3.6E-84 1.2E-88 580.2 20.5 203 57-266 1-204 (213)
6 1p9k_A ORF, hypothetical prote 96.8 0.00058 2E-08 51.0 2.3 57 64-123 21-77 (79)
7 2cqj_A BRMS2, U3 small nucleol 96.7 0.00077 2.6E-08 50.3 2.7 43 74-116 17-61 (71)
8 3j20_D 30S ribosomal protein S 96.0 0.0031 1.1E-07 55.1 2.8 44 74-117 112-157 (180)
9 1c05_A Ribosomal protein S4 de 95.9 0.0091 3.1E-07 50.6 5.0 50 66-116 53-102 (159)
10 3bbn_D Ribosomal protein S4; s 95.8 0.0094 3.2E-07 52.8 5.1 43 74-116 98-140 (201)
11 2vqe_D 30S ribosomal protein S 95.2 0.02 6.7E-07 50.7 5.0 51 65-116 100-150 (209)
12 2do3_A Transcription elongatio 94.9 0.041 1.4E-06 41.5 5.3 47 197-247 18-64 (69)
13 3u5c_J 40S ribosomal protein S 94.9 0.0076 2.6E-07 53.5 1.4 44 74-117 116-161 (197)
14 1ksk_A Ribosomal small subunit 94.9 0.041 1.4E-06 48.1 6.1 51 63-115 3-53 (234)
15 1dm9_A Hypothetical 15.5 KD pr 94.9 0.071 2.4E-06 43.8 7.1 61 61-123 6-66 (133)
16 2ckk_A KIN17; beta barrel, rib 94.9 0.086 2.9E-06 43.4 7.6 41 179-222 56-96 (127)
17 2xzm_D Ribosomal protein S4 co 94.8 0.013 4.5E-07 51.1 2.7 50 65-115 108-159 (181)
18 3r8n_D 30S ribosomal protein S 94.5 0.012 4.1E-07 52.3 1.6 43 74-116 104-146 (205)
19 1vio_A Ribosomal small subunit 94.1 0.094 3.2E-06 46.2 6.6 65 64-130 3-73 (243)
20 3dh3_A Ribosomal large subunit 93.5 0.11 3.7E-06 47.8 6.1 67 62-131 5-79 (290)
21 2k6p_A Uncharacterized protein 93.3 0.022 7.6E-07 43.1 0.9 53 67-121 4-56 (92)
22 2ktl_A Tyrosyl-tRNA synthetase 91.7 0.095 3.2E-06 45.2 2.9 75 65-140 51-139 (164)
23 1v9f_A Ribosomal large subunit 91.5 0.073 2.5E-06 49.0 2.1 53 62-115 15-67 (325)
24 3iz6_C 40S ribosomal protein S 90.9 0.0068 2.3E-07 53.7 -5.2 42 74-115 118-159 (195)
25 2jan_A Tyrosyl-tRNA synthetase 90.4 0.54 1.8E-05 45.8 7.2 66 65-136 357-422 (432)
26 3hp7_A Hemolysin, putative; st 89.4 0.2 6.8E-06 46.1 3.1 52 64-116 7-60 (291)
27 1h3f_A Tyrosyl-tRNA synthetase 88.9 0.55 1.9E-05 45.6 6.0 44 63-107 368-411 (432)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 83.9 0.21 7.1E-06 48.3 0.0 48 63-111 352-399 (420)
29 1vq8_T 50S ribosomal protein L 82.1 1.7 5.9E-05 35.7 4.8 56 193-251 39-101 (120)
30 1nz9_A Transcription antitermi 80.6 4.1 0.00014 28.3 5.8 43 195-239 3-45 (58)
31 3j21_U 50S ribosomal protein L 80.4 1.8 6.3E-05 35.5 4.4 38 193-233 42-79 (121)
32 3u5e_Y L33, YL33, 60S ribosoma 79.4 2.4 8.4E-05 35.1 4.9 56 193-251 46-108 (127)
33 2ts1_A Tyrosyl-tRNA synthetase 77.8 0.45 1.5E-05 46.0 0.0 44 64-108 352-395 (419)
34 3r8s_U 50S ribosomal protein L 72.0 3.3 0.00011 33.0 3.6 35 196-234 3-37 (102)
35 3v2d_Y 50S ribosomal protein L 71.6 2.5 8.4E-05 34.2 2.9 28 195-222 5-32 (110)
36 4a17_S RPL26, 60S ribosomal pr 71.1 4.9 0.00017 33.7 4.6 72 193-276 45-123 (135)
37 3iz5_Y 60S ribosomal protein L 70.2 4.3 0.00015 34.6 4.2 73 193-277 45-124 (150)
38 2ftc_N Mitochondrial ribosomal 69.3 5.3 0.00018 31.4 4.3 23 200-222 1-23 (96)
39 2zjr_R 50S ribosomal protein L 69.1 3.5 0.00012 33.4 3.3 36 196-234 15-50 (115)
40 2zkr_t 60S ribosomal protein L 66.0 3.4 0.00012 34.9 2.7 55 194-251 46-108 (145)
41 4a18_F RPL14; ribosome, eukary 62.5 5.6 0.00019 32.9 3.3 32 197-232 7-38 (126)
42 3kdf_D Replication protein A 3 60.1 62 0.0021 25.6 9.4 78 89-169 21-109 (132)
43 2e6z_A Transcription elongatio 55.5 4.8 0.00016 28.6 1.5 28 194-221 5-32 (59)
44 2wg5_A General control protein 55.3 26 0.00091 27.5 6.0 32 174-205 73-104 (109)
45 3iz5_N 60S ribosomal protein L 54.2 6.8 0.00023 32.7 2.5 26 197-222 7-32 (134)
46 4a18_N RPL27, ribosomal protei 47.3 12 0.00041 31.7 2.9 27 197-223 5-31 (144)
47 3izc_N 60S ribosomal protein R 45.7 11 0.00038 31.6 2.5 32 197-232 15-46 (138)
48 2joy_A 50S ribosomal protein L 44.9 12 0.0004 29.1 2.4 51 197-251 4-58 (96)
49 3j21_5 50S ribosomal protein L 44.8 9.8 0.00034 29.0 1.9 26 197-222 4-29 (83)
50 4gop_B Putative uncharacterize 43.6 72 0.0025 25.3 7.0 77 90-169 27-114 (136)
51 3p8b_B Transcription antitermi 40.3 15 0.0005 30.0 2.4 29 195-223 90-118 (152)
52 2x1d_A Acyl-coenzyme A\:6-amin 36.6 65 0.0022 28.9 6.3 29 61-90 176-204 (357)
53 3e0e_A Replication protein A; 35.9 80 0.0027 23.7 5.8 13 196-209 63-75 (97)
54 2jvv_A Transcription antitermi 35.3 61 0.0021 26.9 5.5 29 194-222 125-153 (181)
55 3m9b_A Proteasome-associated A 34.0 68 0.0023 29.3 5.9 51 174-239 133-183 (251)
56 1i3z_A EWS/FLI1 activated tran 31.4 1.4E+02 0.0046 22.1 6.4 53 78-134 10-66 (103)
57 2in0_A Endonuclease PI-MTUI; h 30.7 74 0.0025 24.9 5.1 26 226-251 53-78 (139)
58 2iwa_A Glutamine cyclotransfer 29.9 92 0.0031 27.7 6.1 60 132-198 127-191 (266)
59 1d4t_A T cell signal transduct 27.0 1.2E+02 0.0041 22.4 5.5 54 77-134 10-67 (104)
60 3gvz_A Uncharacterized protein 25.3 50 0.0017 30.0 3.5 30 60-89 103-132 (299)
61 3lag_A Uncharacterized protein 24.6 1.4E+02 0.0047 22.1 5.4 59 146-209 17-75 (98)
62 1ka6_A SH2 domain protein 1A; 24.2 1.2E+02 0.0042 23.6 5.2 53 78-134 11-67 (128)
63 1zv1_A Doublesex protein; UBA 24.2 30 0.001 25.6 1.5 28 61-91 24-52 (65)
64 2lcj_A PAB POLC intein; hydrol 23.9 1.8E+02 0.006 24.1 6.4 43 143-185 74-120 (185)
65 2qf4_A Cell shape determining 22.6 2.8E+02 0.0096 23.0 7.5 60 173-252 106-166 (172)
66 3bbo_W Ribosomal protein L24; 21.6 12 0.00041 33.0 -1.4 27 196-222 68-94 (191)
67 3iuw_A Activating signal coint 21.3 57 0.0019 25.0 2.6 17 169-185 31-47 (83)
68 1q7h_A Conserved hypothetical 21.2 50 0.0017 26.7 2.4 18 173-190 98-115 (153)
69 3dm3_A Replication factor A; p 21.0 1.7E+02 0.006 22.4 5.4 24 144-167 15-38 (105)
70 2oqc_A Penicillin V acylase; N 20.5 3E+02 0.01 24.9 7.7 65 61-139 95-159 (327)
71 1mkh_A Metrs;, C-terminal doma 20.4 1.2E+02 0.004 23.7 4.3 17 213-229 14-30 (107)
72 1i2k_A 4-amino-4-deoxychorisma 20.2 2E+02 0.0067 24.9 6.2 48 228-277 160-207 (269)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-107 Score=749.81 Aligned_cols=242 Identities=87% Similarity=1.359 Sum_probs=199.3
Q ss_pred ecccceeecCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEE
Q 023289 43 YNSLGLQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFR 122 (284)
Q Consensus 43 ~k~~g~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yR 122 (284)
+|++++||||||||||+++|||||++||||+||||+|++||++||+||+|+||||||||++||||||||||||+|||+||
T Consensus 21 ~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fR 100 (265)
T 3iz6_D 21 DKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYR 100 (265)
T ss_dssp ----------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSCCEEE
T ss_pred ccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEcChhhhcceeEEEEeEEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeecCCcE
Q 023289 123 LLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNI 202 (284)
Q Consensus 123 vl~D~kGrf~l~~I~~eEA~~KLcKV~~Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe~G~~ 202 (284)
|+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||+|++||+||||||+||+
T Consensus 101 ll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~d~ikfe~Gnl 180 (265)
T 3iz6_D 101 LLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180 (265)
T ss_dssp EEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEEEECSSSCCEEEEECCSTTCE
T ss_pred EEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEEEEECCCCceeeEEEccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeeeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHHHHHHH
Q 023289 203 VMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQAAQA 282 (284)
Q Consensus 203 ~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kGi~~~~~e~r~~~~~~~~ 282 (284)
||||||+|+||+|+|++|++|+||+++||++|++|++|+|+++||||||++++||||||++||||++++|||++|+++++
T Consensus 181 ~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~~~ 260 (265)
T 3iz6_D 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAAAQ 260 (265)
T ss_dssp EEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCCC------------------
T ss_pred EEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999887
Q ss_pred hC
Q 023289 283 AA 284 (284)
Q Consensus 283 ~~ 284 (284)
++
T Consensus 261 ~~ 262 (265)
T 3iz6_D 261 AA 262 (265)
T ss_dssp --
T ss_pred hh
Confidence 53
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=4.3e-107 Score=746.03 Aligned_cols=239 Identities=66% Similarity=1.069 Sum_probs=236.6
Q ss_pred ecccceeecCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEE
Q 023289 43 YNSLGLQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFR 122 (284)
Q Consensus 43 ~k~~g~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yR 122 (284)
+|++++||||||||||+++|||||++||||+||||+|++||++||+||+|+||||||||++||||||||||||+|||+||
T Consensus 21 ~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~fR 100 (261)
T 3u5c_E 21 DKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFR 100 (261)
T ss_dssp CSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTTEEEE
T ss_pred ccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCCCEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEcChhhhcceeEEEEeEEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeecCCcE
Q 023289 123 LLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNI 202 (284)
Q Consensus 123 vl~D~kGrf~l~~I~~eEA~~KLcKV~~Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe~G~~ 202 (284)
|+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+||||.||+||||+||+|++||+||||||+||+
T Consensus 101 ll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~Gnl 180 (261)
T 3u5c_E 101 LVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKL 180 (261)
T ss_dssp CCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEEEECCCSSCC
T ss_pred EEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEEEEECCCCceeeEEEccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeeeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHHHHHH
Q 023289 203 VMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQAAQ 281 (284)
Q Consensus 203 ~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kGi~~~~~e~r~~~~~~~ 281 (284)
||||||+|+||+|+|++|++|+||+++||++|++|++|+|+++||||||++++||||||++||||++++|||+++++++
T Consensus 181 ~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~~ 259 (261)
T 3u5c_E 181 VYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQQ 259 (261)
T ss_dssp EEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCTTTTCCCCHHHHHHHHTTTT
T ss_pred EEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988999999999999999999999999765
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=8e-105 Score=730.71 Aligned_cols=237 Identities=53% Similarity=0.916 Sum_probs=233.9
Q ss_pred ecccceeecCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhC--ceEEECCEEeccccCCCcceeEEEeccCCce
Q 023289 43 YNSLGLQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQ--RHVLVDGKVRTDKTYPAGFMDVVSIPKTNEN 120 (284)
Q Consensus 43 ~k~~g~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEakkIl~~--g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~ 120 (284)
+|++++||||||||||+++|||||+++|||+||||+|+|||++||+| |+|+||||||+|++||||||||||||+|||+
T Consensus 21 ~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~e~ 100 (260)
T 2xzm_W 21 NKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQS 100 (260)
T ss_dssp CSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGTEE
T ss_pred ccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCCCE
Confidence 68899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEEeEEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeecCC
Q 023289 121 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVG 200 (284)
Q Consensus 121 yRvl~D~kGrf~l~~I~~eEA~~KLcKV~~Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe~G 200 (284)
|||+||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||||+||+|+|||+||||||+|
T Consensus 101 fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI~d~ikfe~G 180 (260)
T 2xzm_W 101 FRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 180 (260)
T ss_dssp EEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTBEEEEETTTTEEECCCBCCSS
T ss_pred EEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCCeEEEeCCCCceeeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeeeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHHHH
Q 023289 201 NIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQA 279 (284)
Q Consensus 201 ~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kGi~~~~~e~r~~~~~ 279 (284)
|+||||||+|+||+|+|+++++++||+|+||++|++|++|+|+++||||||++++||||||++||||||++|||+++++
T Consensus 181 ~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp~~kgi~l~i~eer~~~~~ 259 (260)
T 2xzm_W 181 NVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKFS 259 (260)
T ss_dssp CEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCSSSSSCCCCHHHHHHHHTC
T ss_pred CEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecCCCCCeecchhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999998779999999999999999999999874
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-95 Score=663.36 Aligned_cols=218 Identities=33% Similarity=0.511 Sum_probs=216.0
Q ss_pred ecccceeecCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEE
Q 023289 43 YNSLGLQAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFR 122 (284)
Q Consensus 43 ~k~~g~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yR 122 (284)
+|++++||||||||||+++|||||++||||+||||+|.|||++|++||+|+||||+|+|++|||||||||||++++|+||
T Consensus 22 ~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~e~fr 101 (243)
T 3j20_E 22 ERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYR 101 (243)
T ss_dssp CTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTTEEEE
T ss_pred ccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccCceeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEcChhhhcceeEEEEeEEEeeCCeeEEEccCCeeeecC---CCCCcCCCeEEEecCCceeeeEEeecC
Q 023289 123 LLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKANDTIKLDLEENKITDFIKFDV 199 (284)
Q Consensus 123 vl~D~kGrf~l~~I~~eEA~~KLcKV~~Kt~~kgG~~ql~thDGrni~~~---dp~ik~~DTv~i~l~~~kI~d~ikfe~ 199 (284)
++||++|||.+|+|++|||+||||||++|++++||+|||+|||||||+|| ||.||+||||+||+|+|||+||||||+
T Consensus 102 ~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~ 181 (243)
T 3j20_E 102 VLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEK 181 (243)
T ss_dssp EEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCT
T ss_pred EEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEeccC
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CcEEEEECCCcceeEEEEEEEEEecCC-ccEEEEEcCCCCeeeEeeceEEEEccCCCceEecC
Q 023289 200 GNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 261 (284)
Q Consensus 200 G~~~~VtgG~n~GrvG~I~~I~~~~gs-~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp 261 (284)
||+||||||+|+||+|+|++|++|+|| +|+||++|++|++|+|+++||||||+ ++||||||
T Consensus 182 G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 182 GAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp TCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSCCSCC
T ss_pred CCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCccccCC
Confidence 999999999999999999999999988 99999999999999999999999998 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=3.6e-84 Score=580.22 Aligned_cols=203 Identities=33% Similarity=0.486 Sum_probs=189.9
Q ss_pred CCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 023289 57 PHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 136 (284)
Q Consensus 57 PH~~~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRvl~D~kGrf~l~~I 136 (284)
.|+++|||||++||||+||||+|.||||+|++||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEEeEEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeecCCcEEEEECCCcceeEEE
Q 023289 137 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGI 216 (284)
Q Consensus 137 ~~eEA~~KLcKV~~Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe~G~~~~VtgG~n~GrvG~ 216 (284)
++|||+||||||++|++++||+|||+|||||||+||||.||+||||++|+|+|||+||||||+||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCC-ccEEEEEcCCCCeeeEeeceEEEEccCCCceEecCCCCce
Q 023289 217 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGI 266 (284)
Q Consensus 217 I~~I~~~~gs-~~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kGi 266 (284)
|++|++++|| +|+|+++ ++|+|+++||||||+ ++|||.++++.=|
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 5999997 579999999999998 7999977666444
No 6
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=96.76 E-value=0.00058 Score=51.04 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=48.5
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 023289 64 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL 123 (284)
Q Consensus 64 lPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRv 123 (284)
+.|.-+|.+. +++.+.+||++.+.+|.|+|||++.++..+.+---|+|++. ++.+.+
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~--~~~~~~ 77 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQV 77 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEE
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC--CEEEEE
Confidence 6788888875 89889999999999999999999999998888777999995 454443
No 7
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.00077 Score=50.28 Aligned_cols=43 Identities=28% Similarity=0.296 Sum_probs=38.7
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcc--eeEEEecc
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF--MDVVSIPK 116 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~--MDVIsI~k 116 (284)
+++|.|.++|++.+++|.|.|||++++.+.|.|-- -|.|++..
T Consensus 17 ~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 17 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred hCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 69999999999999999999999999999999876 67887543
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0031 Score=55.14 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=40.6
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 117 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~M--DVIsI~kt 117 (284)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.- |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 589999999999999999999999999999999886 99999643
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=95.86 E-value=0.0091 Score=50.59 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=42.0
Q ss_pred hHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 023289 66 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 116 (284)
Q Consensus 66 L~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k 116 (284)
|--+|.. +++|.+.++|++.+++|.|.|||++++++.|.+---|+|++..
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 4444543 4688999999999999999999999999999887789999953
No 10
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.82 E-value=0.0094 Score=52.82 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=39.5
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 116 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k 116 (284)
+++|.|.++|++.+.+|.|.|||++++++.|.|---|+|++..
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 4678899999999999999999999999999998889999964
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=95.20 E-value=0.02 Score=50.71 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=42.8
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 023289 65 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 116 (284)
Q Consensus 65 PL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k 116 (284)
-|--+|.. +++|.+.++|++.+.+|.|.|||++++++.|.+---|+|++..
T Consensus 100 RLD~~L~~-~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 100 RLDNVVYR-LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp BHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred HHHHHHHH-hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 34445543 4788999999999999999999999999999988789999964
No 12
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=94.94 E-value=0.041 Score=41.49 Aligned_cols=47 Identities=30% Similarity=0.394 Sum_probs=36.5
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCeeeEeeceE
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNV 247 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~F~T~~~nV 247 (284)
|++|+.+-|++|+|.|++|.|..++. .-++.+.|...+++.-..+++
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~----d~v~v~SD~t~~Ei~V~~~dL 64 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEE----NFVILFSDLTMHELKVLPRDL 64 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECS----SCEEEEESSSCSEEEECTTSE
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeC----CEEEEEeCCCCCEEEEEhHHh
Confidence 78999999999999999999999963 134456777777776554443
No 13
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=94.88 E-value=0.0076 Score=53.49 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=39.5
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 117 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~M--DVIsI~kt 117 (284)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.= |.|++...
T Consensus 116 ~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 116 LGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp SSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 689999999999999999999999999999998775 67887644
No 14
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=94.88 E-value=0.041 Score=48.15 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=42.7
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 023289 63 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 115 (284)
Q Consensus 63 slPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~ 115 (284)
++-|--+|.... ..+.++|++.+.+|.|+|||+++++..+++---|+|++.
T Consensus 3 ~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 3 HMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred cccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 456777888763 678999999999999999999998777777666999986
No 15
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=94.87 E-value=0.071 Score=43.80 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=48.5
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 023289 61 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL 123 (284)
Q Consensus 61 ~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRv 123 (284)
.+++-|--||... .+..+...|++++.+|.|.|||++. ...+.|-.-|+|+|...++.|.+
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~ 66 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeE
Confidence 3457788888764 3346899999999999999999987 78888877899999766655544
No 16
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.86 E-value=0.086 Score=43.44 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCeEEEecCCceeeeEEeecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 179 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 179 ~DTv~i~l~~~kI~d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
|+.+ .+....+--.+| +.|+.+||..|.+.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4554 444444555666 8999999999999999999999954
No 17
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=94.83 E-value=0.013 Score=51.07 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.6
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCccee--EEEec
Q 023289 65 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMD--VVSIP 115 (284)
Q Consensus 65 PL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MD--VIsI~ 115 (284)
=|-.+|- .+++|.|.++|+..+.+|.|.|||++++++.|.|---| .|++.
T Consensus 108 RLD~vL~-~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~ 159 (181)
T 2xzm_D 108 RLQTRVF-KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFA 159 (181)
T ss_dssp BHHHHHH-HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECT
T ss_pred chhHHHH-hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEe
Confidence 3444443 36999999999999999999999999999999996554 67763
No 18
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.45 E-value=0.012 Score=52.33 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=39.3
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 116 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k 116 (284)
+++|.|.++|++.+.+|.|.|||++++++.|.|---|+|+|..
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecC
Confidence 5788999999999999999999999999999887779999964
No 19
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.07 E-value=0.094 Score=46.24 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=48.9
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc-----CCce-EEEEEcCCCc
Q 023289 64 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKGR 130 (284)
Q Consensus 64 lPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k-----t~e~-yRvl~D~kGr 130 (284)
+-|--+|.+.. ..+.++|++.+.+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|-
T Consensus 3 ~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G~ 73 (243)
T 1vio_A 3 LRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGC 73 (243)
T ss_dssp EEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTTC
T ss_pred ccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCCC
Confidence 45677888763 6789999999999999999999988888887778998863 2344 4444444443
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=93.49 E-value=0.11 Score=47.81 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=52.8
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc--------CCceEEEEEcCCCce
Q 023289 62 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGRF 131 (284)
Q Consensus 62 eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~k--------t~e~yRvl~D~kGrf 131 (284)
+++-|--+|.+. +++ +.++|++.+.+|.|.|||+++ +..+.+---|+|+++. .+++|-++.-+.|-.
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~~ 79 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGIV 79 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTCB
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCccc
Confidence 467788899886 554 899999999999999999998 7888776669999852 245666666666644
No 21
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.29 E-value=0.022 Score=43.13 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=38.3
Q ss_pred HHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceE
Q 023289 67 ILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENF 121 (284)
Q Consensus 67 ~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~y 121 (284)
--+|.. .+++.+...|++++.+|.|+|||+++ +..+.+---|+|+|...++.+
T Consensus 4 D~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 4 DKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 344554 24444555699999999999999997 677888666999996544443
No 22
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=91.68 E-value=0.095 Score=45.24 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=54.9
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE-----------Eec---cCCceEEEEEcCCCc
Q 023289 65 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV-----------SIP---KTNENFRLLYDTKGR 130 (284)
Q Consensus 65 PL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVI-----------sI~---kt~e~yRvl~D~kGr 130 (284)
+++=+|- ..++|.+.+|||+.+.||-|+|||....|..-|.|+||-= .+. -.+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 4444454 3699999999999999999999999888854577777641 112 135677788888888
Q ss_pred eEEEEcChhh
Q 023289 131 FRLHSLRDEE 140 (284)
Q Consensus 131 f~l~~I~~eE 140 (284)
|.++.+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 8888775444
No 23
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=91.49 E-value=0.073 Score=49.00 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 023289 62 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 115 (284)
Q Consensus 62 eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~ 115 (284)
.++.|--+|...+ ...+.++|++.+.+|.|+|||+++++..+++---|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3466777777654 2467899999999999999999978888888777999985
No 24
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=90.85 E-value=0.0068 Score=53.72 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=39.1
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 023289 74 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 115 (284)
Q Consensus 74 LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~ 115 (284)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.=|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 589999999999999999999999999999999888887775
No 25
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.45 E-value=0.54 Score=45.77 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=49.1
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 023289 65 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 136 (284)
Q Consensus 65 PL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRvl~D~kGrf~l~~I 136 (284)
++.=+|.. .+.|.+..|||+.+.||-|+|||..++|..+.+.--|.+ +..|-++---|.+|..+.+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~~ 422 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVER 422 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEEE
Confidence 56666764 699999999999999999999999999999877544332 2244455555556655554
No 26
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=89.39 E-value=0.2 Score=46.11 Aligned_cols=52 Identities=6% Similarity=-0.220 Sum_probs=43.1
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECC-E-EeccccCCCcceeEEEecc
Q 023289 64 LPLILVLRNRLKYALTYREVIAILMQRHVLVDG-K-VRTDKTYPAGFMDVVSIPK 116 (284)
Q Consensus 64 lPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDG-k-vrtD~kfPVG~MDVIsI~k 116 (284)
+-|-.+|-. .+++.+.++|++.|++|.|.||| + +.+++.+.|---|.|++..
T Consensus 7 ~RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 346666654 37889999999999999999999 8 8888888877779999963
No 27
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=88.92 E-value=0.55 Score=45.56 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.2
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCc
Q 023289 63 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAG 107 (284)
Q Consensus 63 slPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG 107 (284)
.+++.=+|.. .+.|.+..|||+.+.||-|+|||..++|..+.+.
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceec
Confidence 4567777775 6999999999999999999999999999987554
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=83.88 E-value=0.21 Score=48.26 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeE
Q 023289 63 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDV 111 (284)
Q Consensus 63 slPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDV 111 (284)
.++|.=+|.. .+.|.+..|||+.+.||-|+|||.+.+|..+.+.--|.
T Consensus 352 ~i~l~~lL~~-agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl 399 (420)
T 1jil_A 352 TTNIVEVLIE-TGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDK 399 (420)
T ss_dssp -------------------------------------------------
T ss_pred cccHHHHHHH-cCCccCHHHHHHHHHhCCEEECCEEecccccccCcccc
Confidence 4567777764 69999999999999999999999999999876654443
No 29
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=82.09 E-value=1.7 Score=35.66 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=40.7
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcC-----CCCeeeE--eeceEEEEc
Q 023289 193 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFAT--RLGNVFTIG 251 (284)
Q Consensus 193 d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~-----~g~~F~T--~~~nVfvIG 251 (284)
..+++..|+.+.|+.|+.-|..|+|..+.. ..+.|+||.- +|.+++- -.+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457889999999999999999999999853 2356666655 3444443 356777654
No 30
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=80.63 E-value=4.1 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=31.3
Q ss_pred EeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCe
Q 023289 195 IKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 239 (284)
Q Consensus 195 ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~ 239 (284)
++|++|+.+.|+.|.-.|..|+|.++... ...-.|.++ .-|++
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~-k~~v~V~v~-~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPE-RGKVKVMVT-IFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETT-TTEEEEEEE-SSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCC-CCEEEEEEE-eCCCE
Confidence 56899999999999999999999998532 122344443 44444
No 31
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.38 E-value=1.8 Score=35.50 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEE
Q 023289 193 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ 233 (284)
Q Consensus 193 d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ik 233 (284)
..+++..|+.+.|+.|+.-|..|+|..+... .+.|+||
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VE 79 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVE 79 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEET
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEe
Confidence 3578899999999999999999999998532 2456554
No 32
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=79.42 E-value=2.4 Score=35.14 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=38.7
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc-----CCCCeee--EeeceEEEEc
Q 023289 193 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 251 (284)
Q Consensus 193 d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd-----~~g~~F~--T~~~nVfvIG 251 (284)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+||. .+|.+.+ .-.+||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECC---CCEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 3578888999999999999999999998543 24566654 4554333 2335555543
No 33
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=77.81 E-value=0.45 Score=46.05 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcc
Q 023289 64 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF 108 (284)
Q Consensus 64 lPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~ 108 (284)
+++.=+|.. .+.|.+..|||+.+.||-|+|||..++|..+.+.-
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~ 395 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTA 395 (419)
T ss_dssp ---------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccCh
Confidence 566666664 69999999999999999999999999999876643
No 34
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=71.98 E-value=3.3 Score=32.99 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=27.3
Q ss_pred eecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 023289 196 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 234 (284)
Q Consensus 196 kfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd 234 (284)
++..|+.++|+.|+.-|..|+|.++.+. +.|++++
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~----~~ViVeG 37 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS----GKVIVEG 37 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT----TEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC----CEEEEeC
Confidence 4567999999999999999999998542 4555543
No 35
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=71.58 E-value=2.5 Score=34.18 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=25.1
Q ss_pred EeecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 195 IKFDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 195 ikfe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
+++..|+.+.|+.|+.-|..|+|.++..
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 32 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLP 32 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEEC
Confidence 4677899999999999999999999864
No 36
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=71.10 E-value=4.9 Score=33.70 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=45.0
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc-----CCCCeee--EeeceEEEEccCCCceEecCCCCc
Q 023289 193 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGSKPWVSLPKGKG 265 (284)
Q Consensus 193 d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd-----~~g~~F~--T~~~nVfvIGk~~kp~IsLp~~kG 265 (284)
-.++...|+.++|+.|+.-|..|+|..+.. ..+.|+||. .+|.+.+ .-.|||+++-- .-.-
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~---kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~---------k~dk 112 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYR---KKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKL---------KLDK 112 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCCEEETTTEEECCCBCGGGEEEEEC---------CCCH
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEc---CCCEEEEeCeEEEcCCCCEEEcccchHHEEEEcc---------cCCc
Confidence 356788899999999999999999999853 234555543 4553322 22356655442 2222
Q ss_pred eeeehHHHHHH
Q 023289 266 IKLSIIEEARK 276 (284)
Q Consensus 266 i~~~~~e~r~~ 276 (284)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (135)
T 4a17_S 113 SRQSLLTRKAA 123 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhcc
Confidence 55566666543
No 37
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=70.20 E-value=4.3 Score=34.58 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=47.2
Q ss_pred eEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc-----CCCCeee--EeeceEEEEccCCCceEecCCCCc
Q 023289 193 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGSKPWVSLPKGKG 265 (284)
Q Consensus 193 d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd-----~~g~~F~--T~~~nVfvIGk~~kp~IsLp~~kG 265 (284)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+||. .+|.+.+ .-.|||+++-- --++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~--------k~dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL--------KLDK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC--------CCCS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc--------cCCh-
Confidence 3578889999999999999999999998542 23455443 5564333 23356665542 1133
Q ss_pred eeeehHHHHHHH
Q 023289 266 IKLSIIEEARKR 277 (284)
Q Consensus 266 i~~~~~e~r~~~ 277 (284)
-|..++|.+.+.
T Consensus 113 ~R~~~lerk~~~ 124 (150)
T 3iz5_Y 113 DRKAILDRKASG 124 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhccchhh
Confidence 566677766543
No 38
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=69.30 E-value=5.3 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.0
Q ss_pred CcEEEEECCCcceeEEEEEEEEE
Q 023289 200 GNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 200 G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999864
No 39
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=69.08 E-value=3.5 Score=33.44 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.4
Q ss_pred eecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEc
Q 023289 196 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 234 (284)
Q Consensus 196 kfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd 234 (284)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|+||+
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 778899999999999999999999853 235666654
No 40
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=65.96 E-value=3.4 Score=34.93 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.4
Q ss_pred EEeecCCcEEEEECCCcceeE-EEEEEEEEecCCccEEEEEcCC-----CCeeeE--eeceEEEEc
Q 023289 194 FIKFDVGNIVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFAT--RLGNVFTIG 251 (284)
Q Consensus 194 ~ikfe~G~~~~VtgG~n~Grv-G~I~~I~~~~gs~~iV~ikd~~-----g~~F~T--~~~nVfvIG 251 (284)
.+++..|+.+.|+.|+.-|.. |+|..+.. ..+.|+|++-+ |.+.+- -.+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 467888999999999999999 99999853 23456665543 433222 246776654
No 41
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=62.49 E-value=5.6 Score=32.94 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=27.2
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEE
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 232 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~i 232 (284)
.|+|-.|++..|.++|+.++|++|..+ +-|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999653 45555
No 42
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=60.10 E-value=62 Score=25.55 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=56.3
Q ss_pred CceEEECCEEeccccCCCcceeEEEeccCCceEEE-EEcCCC-ceEEEEcChhh------hc---ceeEEEEeEEEeeCC
Q 023289 89 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL-LYDTKG-RFRLHSLRDEE------AK---FKLCKVRSVQFGQKG 157 (284)
Q Consensus 89 ~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRv-l~D~kG-rf~l~~I~~eE------A~---~KLcKV~~Kt~~kgG 157 (284)
++...+||...+-..+ ||. |.++.+...++.+ |-|..| .+....-..++ +. -..+||.+....-+|
T Consensus 21 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999999887765 666 7778777777777 667779 77776654332 11 368999999888899
Q ss_pred eeEEEccCCeee
Q 023289 158 IPYINTYDGRTI 169 (284)
Q Consensus 158 ~~ql~thDGrni 169 (284)
..|++.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988654443
No 43
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.49 E-value=4.8 Score=28.57 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=25.5
Q ss_pred EEeecCCcEEEEECCCcceeEEEEEEEE
Q 023289 194 FIKFDVGNIVMVTGGRNRGRVGIIKNRE 221 (284)
Q Consensus 194 ~ikfe~G~~~~VtgG~n~GrvG~I~~I~ 221 (284)
...|++|+.+-|+.|.=.|..|+|.++.
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 3568999999999999999999999985
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.35 E-value=26 Score=27.53 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCcCCCeEEEecCCceeeeEEeecCCcEEEE
Q 023289 174 PLIKANDTIKLDLEENKITDFIKFDVGNIVMV 205 (284)
Q Consensus 174 p~ik~~DTv~i~l~~~kI~d~ikfe~G~~~~V 205 (284)
..+++|++|-++-.+..|++.+|.+.+..+.+
T Consensus 73 ~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 73 EELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp TTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred HHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 46999999999999999999999999876643
No 45
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=54.20 E-value=6.8 Score=32.72 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.8
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
.|+|-+|++..|+++|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999954
No 46
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=47.30 E-value=12 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.1
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEe
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREKH 223 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~~ 223 (284)
+++|..|+|..|+.+|+-++|.++...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999988553
No 47
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=45.70 E-value=11 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=26.7
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEE
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 232 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~i 232 (284)
.|+|-+|++..|+.+|+..+|.+|..+ +-|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 478999999999999999999999542 45555
No 48
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=44.89 E-value=12 Score=29.14 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=33.5
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCC----CCeeeEeeceEEEEc
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 251 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~----g~~F~T~~~nVfvIG 251 (284)
+++|..|++..|++.|+..+|.++.. . +.+.+-|.. ...-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD--~--~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID--D--NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS--S--SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC--C--CEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998842 1 345454432 122344445555444
No 49
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.79 E-value=9.8 Score=29.04 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.4
Q ss_pred ecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 197 FDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 197 fe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
+++|..|++..|+..|+..+|.++..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD 29 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID 29 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC
Confidence 57899999999999999999999743
No 50
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=43.58 E-value=72 Score=25.30 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=53.2
Q ss_pred ceEEECCEEeccccCCCcceeEEEeccCCceEEE-EEcCCCceEEEEcChhh-------hc---ceeEEEEeEEEeeCCe
Q 023289 90 RHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL-LYDTKGRFRLHSLRDEE-------AK---FKLCKVRSVQFGQKGI 158 (284)
Q Consensus 90 g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRv-l~D~kGrf~l~~I~~eE-------A~---~KLcKV~~Kt~~kgG~ 158 (284)
+...+||...+-..+ ||. |.++.+...++.+ |-|..|.+....-...+ +. -.++||.+.-..-+|.
T Consensus 27 ~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 567888877776654 555 6777777777666 56777887766544322 11 3789999998888999
Q ss_pred eEEEccCCeee
Q 023289 159 PYINTYDGRTI 169 (284)
Q Consensus 159 ~ql~thDGrni 169 (284)
+|++.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988654443
No 51
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=40.34 E-value=15 Score=30.01 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.2
Q ss_pred EeecCCcEEEEECCCcceeEEEEEEEEEe
Q 023289 195 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 223 (284)
Q Consensus 195 ikfe~G~~~~VtgG~n~GrvG~I~~I~~~ 223 (284)
..|++|+.+-|+.|.-.|..|+|.++...
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 56899999999999999999999999643
No 52
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=36.59 E-value=65 Score=28.95 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=26.3
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCc
Q 023289 61 RECLPLILVLRNRLKYALTYREVIAILMQR 90 (284)
Q Consensus 61 ~eslPL~i~LRd~LkyA~t~rEakkIl~~g 90 (284)
...+|...++|..|. +.|.+||..+|.+-
T Consensus 176 ~~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 176 PTGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TTSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 357999999999999 99999999999854
No 53
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=35.90 E-value=80 Score=23.74 Aligned_cols=13 Identities=31% Similarity=0.504 Sum_probs=7.8
Q ss_pred eecCCcEEEEECCC
Q 023289 196 KFDVGNIVMVTGGR 209 (284)
Q Consensus 196 kfe~G~~~~VtgG~ 209 (284)
.|++|+.+.| .|.
T Consensus 63 ~i~~Gdvv~i-~g~ 75 (97)
T 3e0e_A 63 EVKKGDIAEV-SGY 75 (97)
T ss_dssp CCCTTCEEEE-EEE
T ss_pred ccCCCCEEEE-EEE
Confidence 5666666666 444
No 54
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=35.32 E-value=61 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred EEeecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 194 FIKFDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 194 ~ikfe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
...|++|+.+-|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 34789999999999999999999999864
No 55
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.05 E-value=68 Score=29.28 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCcCCCeEEEecCCceeeeEEeecCCcEEEEECCCcceeEEEEEEEEEecCCccEEEEEcCCCCe
Q 023289 174 PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 239 (284)
Q Consensus 174 p~ik~~DTv~i~l~~~kI~d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~gs~~iV~ikd~~g~~ 239 (284)
..+++|++|.++ ++..|++..+|+. +|.+-++.|+- ++ .+.+.|-+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 479999999995 8999999999987 56777777653 11 2244445555544
No 56
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=31.41 E-value=1.4e+02 Score=22.06 Aligned_cols=53 Identities=26% Similarity=0.581 Sum_probs=34.0
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 023289 78 LTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 134 (284)
Q Consensus 78 ~t~rEakkIl~~g~VkVDGk--vrtD~kfPVG~MDVIsI~kt~--e~yRvl~D~kGrf~l~ 134 (284)
.+..||.++|.++. .||- ||.....|--+ ++|+-..+ .|||+..+..|.|.+-
T Consensus 10 isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 10 LTKRECEALLLKGG--VDGNFLIRDSESVPGAL--CLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp CCHHHHHHHHHTTC--STTEEEEEECSSSTTCE--EEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCHHHHHHHHhhcC--CCceEEEEeCCCCCCCE--EEEEEECCEEEEEEEEECCCCeEEEe
Confidence 57789999998643 5675 56554544323 67764332 5777777777777553
No 57
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=30.70 E-value=74 Score=24.89 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=17.1
Q ss_pred CccEEEEEcCCCCeeeEeeceEEEEc
Q 023289 226 SFETIHIQDALGHEFATRLGNVFTIG 251 (284)
Q Consensus 226 s~~iV~ikd~~g~~F~T~~~nVfvIG 251 (284)
...++.|+..+|.+..+-.+.-|...
T Consensus 53 ~~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 53 TRDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEEETTSCEEEECTTCEEEET
T ss_pred CcEEEEEEeCCCCEEEecCCCeEEec
Confidence 34677777777777766666666644
No 58
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=29.95 E-value=92 Score=27.70 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=37.4
Q ss_pred EEEEcChhhhcceeEEEEeEEEeeCCee-----EEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeec
Q 023289 132 RLHSLRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 198 (284)
Q Consensus 132 ~l~~I~~eEA~~KLcKV~~Kt~~kgG~~-----ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe 198 (284)
.++-|+++ .+|..+ .+.+..+|.| .+-+.||+= |.. ....++..+||..+++++..|++.
T Consensus 127 ~l~viD~~--t~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yvn-~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 127 ILYEIDPH--TFKLIK--KHNVKYNGHRVIRLNELEYINGEV--WAN-IWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEECTT--TCCEEE--EEECEETTEECCCEEEEEEETTEE--EEE-ETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEEECC--CCcEEE--EEEECCCCcccccceeEEEECCEE--EEe-cCCCCeEEEEECCCCcEEEEEECC
Confidence 34555543 334433 3344445555 345568852 322 345788999999999999999985
No 59
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=27.04 E-value=1.2e+02 Score=22.45 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=33.7
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 023289 77 ALTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 134 (284)
Q Consensus 77 A~t~rEakkIl~~g~VkVDGk--vrtD~kfPVG~MDVIsI~kt~--e~yRvl~D~kGrf~l~ 134 (284)
..+..||.++|.+.. .||- ||.....|-.+ ++|+--.+ .|||+..+..|.|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSSSTTCE--EEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCCCCCCE--EEEEEECCeEEEEEEEECCCCeEEEe
Confidence 357789999997543 4665 55544444333 66664333 5788887777877554
No 60
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=25.26 E-value=50 Score=29.99 Aligned_cols=30 Identities=20% Similarity=-0.037 Sum_probs=21.8
Q ss_pred CcccchhHHHHHhhhcccccHHHHHHHHhC
Q 023289 60 SRECLPLILVLRNRLKYALTYREVIAILMQ 89 (284)
Q Consensus 60 ~~eslPL~i~LRd~LkyA~t~rEakkIl~~ 89 (284)
.+...|...++|..|.++.|.+||..+|.+
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~~ 132 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAADK 132 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHHh
Confidence 345669999999999999999999999984
No 61
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=24.61 E-value=1.4e+02 Score=22.11 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=39.2
Q ss_pred EEEEeEEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEecCCceeeeEEeecCCcEEEEECCC
Q 023289 146 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 209 (284)
Q Consensus 146 cKV~~Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~l~~~kI~d~ikfe~G~~~~VtgG~ 209 (284)
+||...+.-+|+..-+..|..+...+ +=+.-+..+..++++. ..+.+.+|...++--|.
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~----~v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~ 75 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVV----PMADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV 75 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEE----ESSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC
T ss_pred EEEEEEEECCCCccCcEECCCcEEEE----EEeccEEEEEeCCCce-EEEEecCCcEEEEcCCC
Confidence 67777888899999999999887443 1222345556665543 34467778888876663
No 62
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=24.24 E-value=1.2e+02 Score=23.59 Aligned_cols=53 Identities=13% Similarity=0.323 Sum_probs=34.2
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 023289 78 LTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 134 (284)
Q Consensus 78 ~t~rEakkIl~~g~VkVDGk--vrtD~kfPVG~MDVIsI~kt~--e~yRvl~D~kGrf~l~ 134 (284)
.+..||.+.|.+.. .||- ||.....|=.+ ++|+-..+ .|||+..+..|+|.+.
T Consensus 11 isR~eAe~lL~~~~--~~G~FLVR~S~~~~g~y--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 11 ISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEEECSSSTTCE--EEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHhcCC--CCCEEEEeecCCCCCCE--EEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 46789999997432 3564 55544444333 77775433 5888888888877665
No 63
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=24.23 E-value=30 Score=25.60 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=22.7
Q ss_pred cccchhHHHHHhhhcccc-cHHHHHHHHhCce
Q 023289 61 RECLPLILVLRNRLKYAL-TYREVIAILMQRH 91 (284)
Q Consensus 61 ~eslPL~i~LRd~LkyA~-t~rEakkIl~~g~ 91 (284)
.|.|||.+++ ||+|. +-.||.+-+.+|+
T Consensus 24 WEmMpLMYVI---LK~A~~d~eeAsrrI~Eg~ 52 (65)
T 1zv1_A 24 WELMPLMYVI---LKDADANIEEASRRIEEGQ 52 (65)
T ss_dssp GGGHHHHHHH---HHHTTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHH---HhccCCCHHHHHHHHHHHH
Confidence 4799999986 89996 7788888777664
No 64
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=23.88 E-value=1.8e+02 Score=24.10 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=28.0
Q ss_pred ceeEEEEe----EEEeeCCeeEEEccCCeeeecCCCCCcCCCeEEEe
Q 023289 143 FKLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 185 (284)
Q Consensus 143 ~KLcKV~~----Kt~~kgG~~ql~thDGrni~~~dp~ik~~DTv~i~ 185 (284)
-++.||+- .-.++..+|.+...+|+-.-.+-.++++||.|.+-
T Consensus 74 ~~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 74 DHLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp SCEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred ceEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 34566542 33467788888887776433345578999988863
No 65
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=22.60 E-value=2.8e+02 Score=22.98 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=41.0
Q ss_pred CCCCcCCCeEEEecCCceeeeEEeecCCcEEEEECCCcceeEEEEEEEEEec-CCccEEEEEcCCCCeeeEeeceEEEEc
Q 023289 173 DPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 251 (284)
Q Consensus 173 dp~ik~~DTv~i~l~~~kI~d~ikfe~G~~~~VtgG~n~GrvG~I~~I~~~~-gs~~iV~ikd~~g~~F~T~~~nVfvIG 251 (284)
+.+++.||.|+-+=-.+. |-+|= -+|+|.+++..+ +.+..+.++=+.. -.++++|+||-
T Consensus 106 ~~~i~~GD~vvTSGl~g~------fP~Gi-----------pVG~V~~v~~~~~~~~~~i~v~p~ad---~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNF------NVADI-----------PVGEVVATTHSTDYLTREVTVKLSAD---THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSS------CCEEE-----------EEEEEEEEESTTCSSCCEEEEEESCC---CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCc------CCCCC-----------EEEEEEEEecCCCCcEEEEEEEECCC---cccCeEEEEEe
Confidence 457899998887765542 22231 389999998766 4567788875442 35678999998
Q ss_pred c
Q 023289 252 K 252 (284)
Q Consensus 252 k 252 (284)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 66
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.61 E-value=12 Score=33.03 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=22.5
Q ss_pred eecCCcEEEEECCCcceeEEEEEEEEE
Q 023289 196 KFDVGNIVMVTGGRNRGRVGIIKNREK 222 (284)
Q Consensus 196 kfe~G~~~~VtgG~n~GrvG~I~~I~~ 222 (284)
++..|+.+.|+.|+.-|..|+|.++..
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eeecCCEEEEeecCCCCceEEEEEEEC
Confidence 366788888999999999999988854
No 67
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=21.33 E-value=57 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.0
Q ss_pred eecCCCCCcCCCeEEEe
Q 023289 169 IRYPDPLIKANDTIKLD 185 (284)
Q Consensus 169 i~~~dp~ik~~DTv~i~ 185 (284)
+|..|.+|++||.+.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 77788889999988763
No 68
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=21.19 E-value=50 Score=26.70 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=13.1
Q ss_pred CCCCcCCCeEEEecCCce
Q 023289 173 DPLIKANDTIKLDLEENK 190 (284)
Q Consensus 173 dp~ik~~DTv~i~l~~~k 190 (284)
++.++.||.|.|--+.++
T Consensus 98 ~~~~~~gd~V~V~~~~g~ 115 (153)
T 1q7h_A 98 DDSIRKGDMIFVKSSKGY 115 (153)
T ss_dssp CTTCCTTCEEEEEETTSC
T ss_pred cCceeCCCEEEEEECCCC
Confidence 567888888887776554
No 69
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=21.01 E-value=1.7e+02 Score=22.37 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=12.8
Q ss_pred eeEEEEeEEEeeCCeeEEEccCCe
Q 023289 144 KLCKVRSVQFGQKGIPYINTYDGR 167 (284)
Q Consensus 144 KLcKV~~Kt~~kgG~~ql~thDGr 167 (284)
.-+-|..+-.-.+..-++...||+
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~ 38 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGS 38 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSC
T ss_pred CeEEEEEEEEECCCceEEEcCCCC
Confidence 445555555544445555555664
No 70
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=20.48 E-value=3e+02 Score=24.89 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=45.8
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 023289 61 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 139 (284)
Q Consensus 61 ~eslPL~i~LRd~LkyA~t~rEakkIl~~g~VkVDGkvrtD~kfPVG~MDVIsI~kt~e~yRvl~D~kGrf~l~~I~~e 139 (284)
...++...|+|-.|..+.|-.||+.+|.+ +.+ -+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 95 ~~~l~~~~~i~~iL~~~~tV~Ea~~~L~~--~~i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 159 (327)
T 2oqc_A 95 TVHIVPHEFVTWVLSVCQSLEDVKEKIRS--LTI-----VEKKLDLLD------TVLPLHW-ILSDRTGRNLTIEPRAD 159 (327)
T ss_dssp SEEECGGGHHHHHHHHCCSHHHHHHHGGG--EEE-----BCCCBGGGT------BCCCEEE-EEECTTSCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHc--Cce-----ecccccCcC------CccceEE-EEEcCCCCEEEEEEecC
Confidence 45899999999999999999999999986 322 233344321 1133454 46799988888877554
No 71
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=20.37 E-value=1.2e+02 Score=23.73 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.4
Q ss_pred eEEEEEEEEEecCCccE
Q 023289 213 RVGIIKNREKHKGSFET 229 (284)
Q Consensus 213 rvG~I~~I~~~~gs~~i 229 (284)
++|+|.+.++||.+..+
T Consensus 14 ~VG~I~~~e~hp~adkL 30 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADKL 30 (107)
T ss_dssp EEEEEEEEEECTTCSSC
T ss_pred EEEEEEEEEECCCCCcc
Confidence 68999999999987643
No 72
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=20.23 E-value=2e+02 Score=24.95 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCeeeEeeceEEEEccCCCceEecCCCCceeeehHHHHHHH
Q 023289 228 ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 277 (284)
Q Consensus 228 ~iV~ikd~~g~~F~T~~~nVfvIGk~~kp~IsLp~~kGi~~~~~e~r~~~ 277 (284)
+-+.+-|.+|+-=|+..+|+|++= +.-|++-|.+.|+-..+..++-.+
T Consensus 160 de~l~ld~~G~v~E~s~sNif~v~--~g~l~TP~~~~~iL~GitR~~ll~ 207 (269)
T 1i2k_A 160 DEALVLDSEGWVTECCAANLFWRK--GNVVYTPRLDQAGVNGIMRQFCIR 207 (269)
T ss_dssp SEEEEEBTTSBEEECSSSEEEEEE--TTEEEEECCSSSSBCCHHHHHHHH
T ss_pred CEEEEECCCCcEEEcCceEEEEEE--CCEEECCCCccCccCCHHHHHHHH
Confidence 444455899999999999999984 445888888877766665444333
Done!