BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023290
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 210
           I+DRV F+ K   VA  LA  D+++  S+   E FG + +EAMA  +P +GT  GG  E+
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 322

Query: 211 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 267
           + +G TG L  VG    T +A   ++L    E    MG+R  E V E F+   +  +
Sbjct: 323 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQ 377


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 210
           I+DRV F+ K   VA  LA  D+++  S+   E FG + +EAMA  +P +GT  GG  E+
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 342

Query: 211 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 267
           + +G TG L  VG    T +A   ++L    E    MG+R  E V E F+   +  +
Sbjct: 343 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQ 397


>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi
 pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
 pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshi Produced By Soaking In Trehalose
          Length = 416

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 120 VPSVHAVIIG----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVL 174
           +P V  +++G     D      FE  LR       ++   + +      V  +  A DV+
Sbjct: 260 IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319

Query: 175 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 234
           +Q S    E FG    EAM    PV+G A GG    +V+G TG L     E +    + +
Sbjct: 320 LQMSIR--EGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373

Query: 235 VKLATHVERRLTMGKRGYERVKEIF 259
           + L  H E    MG +  ERV++ F
Sbjct: 374 LYLLKHPEVSKEMGAKAKERVRKNF 398


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKLATH 240
           E FG   +EAM   LP   T  GG  EI+V+G +G  + P  G +    LA    K    
Sbjct: 675 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734

Query: 241 VERRLTMGKRGYERVKEIFQEHHMAERI 268
                 + K G +R++E +     ++R+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762


>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horishiki In Complex With Udp
 pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
 pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
           From P.Horikoshii In Complex With Udpg
          Length = 416

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 120 VPSVHAVIIG----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVL 174
           +P V  +++G     D      FE  LR       ++   + +      V  +  A DV+
Sbjct: 260 IPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319

Query: 175 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 234
           +Q S   G  FG    EAM    PV+G A GG    +V+G TG L     E +    + +
Sbjct: 320 LQMSIRAG--FGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373

Query: 235 VKLATHVERRLTMGKRGYERVKEIF 259
           + L  H E    MG +  ERV++ F
Sbjct: 374 LYLLKHPEVSKEMGAKAKERVRKNF 398


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKLATH 240
           E FG   +EA    LP   T  GG  EI+V+G +G  + P  G +    LA    K    
Sbjct: 675 EAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734

Query: 241 VERRLTMGKRGYERVKEIFQEHHMAERI 268
                 + K G +R++E +     ++R+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 126 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 182
           VII    +         R+   +  ++ R+ F++    +  VA Y AA  V V    ++ 
Sbjct: 279 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 335

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 240
           E FG + +EA A   PV+    GG    V  G TGLL     +G +P   A  +  L   
Sbjct: 336 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 391

Query: 241 VERRLTMGKRGYERVK 256
            E R+ MG+   E  +
Sbjct: 392 DETRIRMGEDAVEHAR 407


>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242
           E FG   +EAMA  LP + T  GG  EI+  G  G+L  V  E    +A+ ++K     E
Sbjct: 369 EPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVL--VDPEDPEDIARGLLKAFESEE 426

Query: 243 RRLTMGKRGYERVKEIFQEHHMA 265
                 ++G +RV+E +     A
Sbjct: 427 TWSAYQEKGKQRVEERYTWQETA 449


>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
 pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
           Horikoshii (Seleno Derivative)
          Length = 416

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 120 VPSVHAVIIG----SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVL 174
           +P V  +++G     D      FE  LR       ++   + +      V  +  A DV+
Sbjct: 260 IPGVQLLLVGVXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVI 319

Query: 175 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 234
           +Q S    E FG    EA     PV+G A GG    +V+G TG L     E +    + +
Sbjct: 320 LQXSIR--EGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVV 373

Query: 235 VKLATHVERRLTMGKRGYERVKEIF 259
           + L  H E     G +  ERV++ F
Sbjct: 374 LYLLKHPEVSKEXGAKAKERVRKNF 398


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 126 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 182
           VII    +         R+   +  ++ R+ F++    +  VA Y AA  V V +   + 
Sbjct: 259 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS---FN 315

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 240
           E FG + +EA A   PV+    GG    V  G TGLL     +G +P   A  +  L   
Sbjct: 316 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 371

Query: 241 VERRLTMGKRGYERVK 256
            E R+ MG+   E  +
Sbjct: 372 DETRIRMGEDAVEHAR 387


>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 37.0 bits (84), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 210
           ++  VHF +    V+  +AA D+L+    A+ E  G + +EA+   LPVL TA  G    
Sbjct: 251 VRSNVHFFSGRNDVSELMAAADLLLH--PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHY 308

Query: 211 VVNGTTG--LLHPVGKEGIT 228
           + +   G  +  P  +E + 
Sbjct: 309 IADANCGTVIAEPFSQEQLN 328


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 35.4 bits (80), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 71  REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 130
           +   R+ LG  +   + A  + +   KGQD  + +  +            P    +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237

Query: 131 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 183
                 ++ES LR   +   +   V F+ +     +   LAA D+    ++  G     E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290

Query: 184 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 215
             G + +EA A  +PV+   +GG  E V   T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 35.4 bits (80), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 71  REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 130
           +   R+ LG  +   + A  + +   KGQD  + +  +            P    +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237

Query: 131 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 183
                 ++ES LR   +   +   V F+ +     +   LAA D+    ++  G     E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290

Query: 184 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 215
             G + +EA A  +PV+   +GG  E V   T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score = 34.3 bits (77), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 18/135 (13%)

Query: 86  LFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNY 145
           L A I  +   KG D+   +  E              V  V++G+    + KFE  L++ 
Sbjct: 329 LIAFIGRLEEQKGPDVMAAAIPELMQE---------DVQIVLLGT---GKKKFEKLLKS- 375

Query: 146 VMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203
            M++K   +V  V K      +L  A  DVL   S+   E  G I ++ M +  P    +
Sbjct: 376 -MEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRF--EPCGLIQLQGMRYGTPCACAS 432

Query: 204 AGGTTEIVVNGTTGL 218
            GG  + V+ G TG 
Sbjct: 433 TGGLVDTVIEGKTGF 447


>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 19/37 (51%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 219
           E FG   IEA A   PV+    GG  E V+N  TG L
Sbjct: 108 EDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144


>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
 pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
          Length = 294

 Score = 30.8 bits (68), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 36  RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 84
           +E   +K   T  +H G  KE++E+AE  VAK  L+    E  GV N +
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYNPE 217


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 30.8 bits (68), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236
           E FG + +EAM      + +A GG  +I+ N  TG+L   G  G   LA  I+K
Sbjct: 341 EPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 30.8 bits (68), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242
           E FG + +EAM      + +A GG  +I+ N  TG+L   G  G   LA  I+K      
Sbjct: 342 EPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILKALELSR 398

Query: 243 RRLTMGKRGYERVKEIFQEHHMAER 267
             L+  +   ++    F     AER
Sbjct: 399 SDLSKFRENCKKRAMSFSWEKSAER 423


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 30.8 bits (68), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236
           E FG + +EAM      + +A GG  +I+ N  TG+L   G  G   LA  I+K
Sbjct: 126 EPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 176


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 30.8 bits (68), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 183 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236
           E FG + +EAM      + +A GG  +I+ N  TG+L   G  G   LA  I+K
Sbjct: 341 EPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391


>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12
 pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
 pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
 pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
           Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
           Complex
          Length = 267

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 120 VPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178
           V  +  V IG +D++A   +     +  +Q+ I+  +  +      A +LA    + Q  
Sbjct: 167 VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQC 226

Query: 179 QAWGECFGRITIEAMAF 195
            AWG  F  + ++ M +
Sbjct: 227 LAWGANFVAVGVDTMLY 243


>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp-Man
 pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
           Mannosyltransferase (Pima) From Mycobacterium Smegmatis
           In Complex With Gdp
          Length = 406

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 182 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241
           GE FG + +EAMA    V+ +       ++ +G  G L PV  +    +A  ++ +    
Sbjct: 293 GESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPV--DDADGMAAALIGILEDD 350

Query: 242 ERRLTMGKRGYERV 255
           + R     R  ERV
Sbjct: 351 QLRAGYVARASERV 364


>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 27.7 bits (60), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 180 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG--LLHPVGKEGIT 228
           A+ E  G + +EA+   LPVL TA  G    + +   G  +  P  +E + 
Sbjct: 278 AYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLN 328


>pdb|3I5P|A Chain A, Nup170(Aa979-1502), S.Cerevisiae
          Length = 525

 Score = 27.3 bits (59), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 34  RTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV----RNEDLLFAI 89
           R  + + ++  D+   HL N+  L+E   D+++   L+E V   L V    ++ + L  I
Sbjct: 34  RRAKEIGLRNYDSLNYHLKNATALLEQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNI 93

Query: 90  INSVSRGK 97
            NS+ +GK
Sbjct: 94  ANSMDKGK 101


>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
 pdb|2DC0|B Chain B, Crystal Structure Of Amidase
          Length = 434

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV--NGTTGLLHPV 222
            P   A+D    + QA G   G     A+   L  LGT  GG+  I    NG  G     
Sbjct: 132 GPVRNAVD---PSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSY 188

Query: 223 GK---EGITPLAKN 233
           G+   EG  PL+++
Sbjct: 189 GRVSLEGALPLSRS 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,474,314
Number of Sequences: 62578
Number of extensions: 277464
Number of successful extensions: 657
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 26
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)