Query 023290
Match_columns 284
No_of_seqs 221 out of 1937
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15427 colanic acid biosynth 100.0 1.7E-38 3.7E-43 272.9 20.9 231 10-274 168-405 (406)
2 TIGR03088 stp2 sugar transfera 100.0 1.8E-37 3.8E-42 265.5 25.3 240 15-276 135-374 (374)
3 PRK15484 lipopolysaccharide 1, 100.0 7.7E-37 1.7E-41 261.1 25.7 237 13-276 136-379 (380)
4 TIGR03449 mycothiol_MshA UDP-N 100.0 4.1E-36 8.8E-41 259.7 25.8 241 13-277 160-404 (405)
5 PRK15490 Vi polysaccharide bio 100.0 4.4E-36 9.6E-41 257.4 24.1 229 20-274 342-575 (578)
6 cd03813 GT1_like_3 This family 100.0 5.3E-36 1.1E-40 262.8 20.5 230 12-273 240-475 (475)
7 PRK14099 glycogen synthase; Pr 100.0 4.4E-35 9.4E-40 256.0 25.4 248 12-280 205-484 (485)
8 PRK15179 Vi polysaccharide bio 100.0 1.9E-35 4.1E-40 264.3 23.5 230 19-273 461-692 (694)
9 cd04962 GT1_like_5 This family 100.0 6.6E-35 1.4E-39 249.3 24.9 235 11-275 137-371 (371)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 3.5E-35 7.7E-40 255.4 23.5 247 13-273 181-439 (439)
11 PLN02939 transferase, transfer 100.0 1.1E-34 2.4E-39 260.7 26.5 250 13-280 690-972 (977)
12 PRK10307 putative glycosyl tra 100.0 5.4E-35 1.2E-39 253.0 22.6 237 12-278 167-411 (412)
13 PRK00654 glgA glycogen synthas 100.0 1E-34 2.2E-39 254.2 23.9 244 13-277 194-465 (466)
14 TIGR02149 glgA_Coryne glycogen 100.0 1.3E-34 2.9E-39 248.8 24.0 238 12-276 140-388 (388)
15 PLN02871 UDP-sulfoquinovose:DA 100.0 2.6E-34 5.6E-39 251.9 23.4 230 13-278 202-438 (465)
16 TIGR02918 accessory Sec system 100.0 6.3E-34 1.4E-38 248.6 25.1 228 12-275 266-500 (500)
17 cd03818 GT1_ExpC_like This fam 100.0 2.5E-34 5.3E-39 247.6 21.4 234 12-269 152-395 (396)
18 PLN02316 synthase/transferase 100.0 9.1E-34 2E-38 258.9 25.5 247 12-277 757-1036(1036)
19 TIGR02468 sucrsPsyn_pln sucros 100.0 5.1E-34 1.1E-38 259.9 23.2 255 13-279 378-675 (1050)
20 PRK14098 glycogen synthase; Pr 100.0 1.1E-33 2.3E-38 247.5 23.6 244 13-277 217-488 (489)
21 cd03796 GT1_PIG-A_like This fa 100.0 8.1E-34 1.8E-38 244.5 22.3 230 13-279 141-372 (398)
22 TIGR02095 glgA glycogen/starch 100.0 1.1E-33 2.3E-38 248.6 22.8 242 13-275 202-473 (473)
23 cd05844 GT1_like_7 Glycosyltra 100.0 5.7E-34 1.2E-38 243.1 19.8 223 12-270 138-366 (367)
24 cd03819 GT1_WavL_like This fam 100.0 2E-33 4.4E-38 238.6 22.3 234 12-264 120-355 (355)
25 TIGR02470 sucr_synth sucrose s 100.0 4.8E-33 1E-37 248.8 25.4 250 12-272 448-745 (784)
26 cd03792 GT1_Trehalose_phosphor 100.0 4.4E-33 9.6E-38 238.0 23.0 217 41-274 151-371 (372)
27 cd04946 GT1_AmsK_like This fam 100.0 3.8E-33 8.3E-38 240.3 22.3 223 13-269 180-406 (407)
28 PLN02949 transferase, transfer 100.0 1.4E-32 3E-37 238.0 25.3 235 14-278 218-460 (463)
29 cd03807 GT1_WbnK_like This fam 100.0 1.4E-32 3E-37 233.2 23.9 233 12-273 132-365 (365)
30 cd04951 GT1_WbdM_like This fam 100.0 3.2E-32 6.9E-37 231.5 25.3 228 17-273 131-359 (360)
31 cd03800 GT1_Sucrose_synthase T 100.0 2.7E-32 5.8E-37 235.2 23.9 235 13-269 160-397 (398)
32 cd03805 GT1_ALG2_like This fam 100.0 1.3E-32 2.8E-37 236.9 21.3 235 13-268 151-392 (392)
33 cd03791 GT1_Glycogen_synthase_ 100.0 6.3E-32 1.4E-36 238.1 21.3 240 13-273 207-475 (476)
34 PLN00142 sucrose synthase 100.0 1.9E-31 4E-36 238.7 23.9 219 43-272 519-768 (815)
35 cd04949 GT1_gtfA_like This fam 100.0 1.2E-31 2.5E-36 229.4 21.5 219 12-268 153-372 (372)
36 cd03799 GT1_amsK_like This is 100.0 1.3E-31 2.7E-36 227.5 21.1 224 10-268 124-355 (355)
37 TIGR03087 stp1 sugar transfera 100.0 4.5E-31 9.9E-36 227.4 23.9 227 13-273 169-395 (397)
38 cd03812 GT1_CapH_like This fam 100.0 2.7E-31 5.9E-36 225.8 20.9 215 13-257 134-348 (358)
39 PRK09922 UDP-D-galactose:(gluc 100.0 2E-31 4.3E-36 226.6 19.8 221 14-277 131-358 (359)
40 cd03821 GT1_Bme6_like This fam 100.0 7.5E-31 1.6E-35 223.3 23.2 226 14-269 147-374 (375)
41 PHA01630 putative group 1 glyc 100.0 3.4E-31 7.4E-36 220.7 20.5 219 14-274 92-330 (331)
42 cd03795 GT1_like_4 This family 100.0 7.3E-31 1.6E-35 222.9 20.2 222 12-265 133-357 (357)
43 cd03801 GT1_YqgM_like This fam 100.0 2.8E-30 6.1E-35 218.9 23.2 234 11-273 139-374 (374)
44 cd03822 GT1_ecORF704_like This 100.0 3.1E-30 6.6E-35 219.5 23.5 233 11-273 129-366 (366)
45 cd03806 GT1_ALG11_like This fa 100.0 9.8E-31 2.1E-35 225.8 20.4 228 11-266 184-418 (419)
46 cd04955 GT1_like_6 This family 100.0 5.2E-30 1.1E-34 218.2 22.4 220 13-273 140-363 (363)
47 cd03825 GT1_wcfI_like This fam 100.0 1.2E-29 2.6E-34 216.0 24.3 225 16-274 135-364 (365)
48 cd03817 GT1_UGDG_like This fam 100.0 1.4E-29 3.1E-34 215.5 24.0 228 12-274 144-373 (374)
49 cd03820 GT1_amsD_like This fam 100.0 1.1E-29 2.4E-34 213.8 22.1 217 11-269 130-347 (348)
50 cd03808 GT1_cap1E_like This fa 100.0 1.1E-29 2.4E-34 214.8 22.0 223 12-269 134-358 (359)
51 cd03814 GT1_like_2 This family 100.0 1.1E-29 2.4E-34 215.7 21.9 223 12-273 140-364 (364)
52 cd03798 GT1_wlbH_like This fam 100.0 1.1E-29 2.5E-34 215.7 20.9 232 11-274 143-376 (377)
53 cd03809 GT1_mtfB_like This fam 100.0 7.4E-30 1.6E-34 217.0 18.5 229 10-269 134-364 (365)
54 cd03811 GT1_WabH_like This fam 100.0 2.3E-29 5E-34 212.1 21.3 220 11-260 130-352 (353)
55 PHA01633 putative glycosyl tra 100.0 3.1E-29 6.7E-34 206.7 21.4 225 11-270 87-335 (335)
56 cd03816 GT1_ALG1_like This fam 100.0 5.2E-29 1.1E-33 215.2 22.8 233 13-267 157-409 (415)
57 PLN02501 digalactosyldiacylgly 100.0 2E-28 4.3E-33 213.1 22.3 209 17-272 499-707 (794)
58 cd03794 GT1_wbuB_like This fam 100.0 1.9E-28 4.1E-33 209.6 21.9 226 12-268 161-393 (394)
59 KOG1111 N-acetylglucosaminyltr 100.0 1.1E-29 2.5E-34 202.0 12.6 237 4-279 133-371 (426)
60 PRK10125 putative glycosyl tra 100.0 1.3E-28 2.8E-33 211.2 19.9 206 16-274 190-404 (405)
61 PF00534 Glycos_transf_1: Glyc 100.0 2.6E-28 5.7E-33 186.3 18.8 169 71-254 2-172 (172)
62 cd03823 GT1_ExpE7_like This fa 100.0 8.7E-28 1.9E-32 203.6 21.4 214 16-273 143-358 (359)
63 cd03802 GT1_AviGT4_like This f 100.0 7.4E-28 1.6E-32 202.9 20.2 205 13-273 128-335 (335)
64 cd03804 GT1_wbaZ_like This fam 100.0 7.4E-28 1.6E-32 204.3 19.4 199 13-268 150-350 (351)
65 TIGR02400 trehalose_OtsA alpha 100.0 4.5E-27 9.7E-32 203.2 22.5 247 12-272 179-454 (456)
66 PLN02846 digalactosyldiacylgly 100.0 3.8E-27 8.2E-32 201.6 21.1 208 17-273 181-390 (462)
67 cd03793 GT1_Glycogen_synthase_ 99.9 7E-26 1.5E-30 195.0 23.5 256 13-277 223-589 (590)
68 cd03788 GT1_TPS Trehalose-6-Ph 99.9 3.6E-26 7.7E-31 199.1 21.8 246 13-272 184-459 (460)
69 KOG0853 Glycosyltransferase [C 99.9 3.9E-26 8.4E-31 192.8 17.4 255 14-276 207-469 (495)
70 PRK05749 3-deoxy-D-manno-octul 99.9 2.4E-25 5.2E-30 193.5 18.4 235 11-278 173-423 (425)
71 PLN02275 transferase, transfer 99.9 2.6E-25 5.6E-30 189.7 17.6 196 13-238 162-371 (371)
72 PLN03063 alpha,alpha-trehalose 99.9 1.4E-24 3.1E-29 198.6 23.2 256 10-278 197-481 (797)
73 PLN02605 monogalactosyldiacylg 99.9 8.4E-24 1.8E-28 181.1 21.3 229 10-272 144-379 (382)
74 PRK14501 putative bifunctional 99.9 3E-23 6.5E-28 190.1 20.4 253 11-278 184-466 (726)
75 PRK13608 diacylglycerol glucos 99.9 3.4E-22 7.3E-27 171.5 20.0 228 12-279 143-376 (391)
76 PRK13609 diacylglycerol glucos 99.9 4.2E-22 9.1E-27 170.8 20.4 225 11-275 142-372 (380)
77 cd04950 GT1_like_1 Glycosyltra 99.9 6.5E-23 1.4E-27 175.1 14.1 219 11-274 148-371 (373)
78 COG0297 GlgA Glycogen synthase 99.9 1.6E-21 3.6E-26 167.2 21.0 250 10-280 202-483 (487)
79 TIGR02398 gluc_glyc_Psyn gluco 99.9 1.5E-20 3.3E-25 162.0 23.8 248 12-273 184-481 (487)
80 COG0438 RfaG Glycosyltransfera 99.9 9.3E-20 2E-24 153.5 24.3 225 17-277 151-379 (381)
81 PRK00726 murG undecaprenyldiph 99.9 6.7E-21 1.5E-25 162.1 17.0 214 14-273 134-356 (357)
82 cd03785 GT1_MurG MurG is an N- 99.9 8.7E-21 1.9E-25 161.0 16.8 207 14-265 132-348 (350)
83 TIGR01133 murG undecaprenyldip 99.9 1.4E-20 3E-25 159.7 15.4 205 14-265 133-345 (348)
84 KOG1387 Glycosyltransferase [C 99.8 4.1E-19 8.9E-24 141.4 19.8 237 11-278 217-462 (465)
85 TIGR03713 acc_sec_asp1 accesso 99.8 3.4E-18 7.4E-23 149.9 21.1 219 12-272 268-519 (519)
86 PF13692 Glyco_trans_1_4: Glyc 99.8 6.9E-20 1.5E-24 134.0 8.8 133 84-240 2-135 (135)
87 PLN03064 alpha,alpha-trehalose 99.8 6.2E-18 1.3E-22 154.9 20.7 253 12-277 283-564 (934)
88 TIGR00236 wecB UDP-N-acetylglu 99.8 2.8E-17 6.1E-22 140.2 18.2 201 16-251 141-345 (365)
89 PRK00025 lpxB lipid-A-disaccha 99.8 7.1E-17 1.5E-21 138.6 18.7 222 14-277 132-376 (380)
90 PRK09814 beta-1,6-galactofuran 99.8 1.8E-17 4E-22 139.3 14.5 196 11-267 118-324 (333)
91 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 2.7E-17 5.8E-22 140.3 14.8 214 14-271 139-361 (363)
92 TIGR02094 more_P_ylases alpha- 99.7 6.9E-16 1.5E-20 137.1 23.8 253 12-272 258-598 (601)
93 cd01635 Glycosyltransferase_GT 99.7 8.3E-17 1.8E-21 127.8 13.2 118 89-220 109-229 (229)
94 cd04299 GT1_Glycogen_Phosphory 99.7 3.8E-14 8.3E-19 128.4 22.4 192 80-275 474-691 (778)
95 PF13524 Glyco_trans_1_2: Glyc 99.6 1.6E-15 3.4E-20 103.0 9.2 92 173-270 1-92 (92)
96 PF05693 Glycogen_syn: Glycoge 99.6 8.1E-14 1.8E-18 120.4 20.1 259 14-281 219-588 (633)
97 KOG2941 Beta-1,4-mannosyltrans 99.6 2.6E-13 5.6E-18 108.7 20.2 175 82-269 253-436 (444)
98 PF00982 Glyco_transf_20: Glyc 99.6 3.2E-13 7E-18 117.1 22.1 250 12-273 193-473 (474)
99 TIGR00215 lpxB lipid-A-disacch 99.6 1.2E-13 2.7E-18 118.1 18.6 212 13-260 135-370 (385)
100 PRK10117 trehalose-6-phosphate 99.6 7.3E-13 1.6E-17 113.6 21.2 251 12-277 175-456 (474)
101 TIGR02919 accessory Sec system 99.5 7.3E-13 1.6E-17 113.9 18.4 189 13-255 236-426 (438)
102 PLN02205 alpha,alpha-trehalose 99.5 1.5E-11 3.3E-16 113.7 22.9 255 12-278 253-555 (854)
103 COG0380 OtsA Trehalose-6-phosp 99.4 6.1E-11 1.3E-15 101.6 21.8 250 12-274 199-479 (486)
104 PF13844 Glyco_transf_41: Glyc 99.4 3.4E-11 7.4E-16 103.1 18.9 182 74-275 275-467 (468)
105 COG0707 MurG UDP-N-acetylgluco 99.3 8E-10 1.7E-14 92.8 18.8 195 41-274 151-353 (357)
106 COG1519 KdtA 3-deoxy-D-manno-o 99.3 8.9E-10 1.9E-14 91.8 18.5 229 10-273 171-416 (419)
107 COG3914 Spy Predicted O-linked 99.2 1.7E-09 3.6E-14 92.8 16.8 187 75-279 421-618 (620)
108 PRK12446 undecaprenyldiphospho 99.2 3.4E-09 7.3E-14 89.7 17.0 189 41-273 151-350 (352)
109 TIGR03492 conserved hypothetic 99.1 9.1E-09 2E-13 88.4 17.9 198 14-255 158-379 (396)
110 COG0763 LpxB Lipid A disacchar 98.9 1.3E-07 2.7E-12 78.3 15.7 206 11-252 131-356 (381)
111 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 3.9E-07 8.4E-12 77.7 16.9 198 39-271 162-364 (365)
112 PF02684 LpxB: Lipid-A-disacch 98.8 5.3E-07 1.1E-11 76.1 16.6 197 15-249 132-349 (373)
113 TIGR01426 MGT glycosyltransfer 98.8 4.7E-07 1E-11 78.2 15.7 114 151-272 273-390 (392)
114 KOG3742 Glycogen synthase [Car 98.7 1.5E-06 3.3E-11 72.8 16.1 115 162-279 492-617 (692)
115 PRK02797 4-alpha-L-fucosyltran 98.6 1.7E-06 3.7E-11 69.8 14.1 172 83-278 145-320 (322)
116 COG0058 GlgP Glucan phosphoryl 98.6 6.3E-06 1.4E-10 74.4 18.5 207 16-224 374-632 (750)
117 cd03784 GT1_Gtf_like This fami 98.6 3.9E-06 8.4E-11 72.7 16.0 93 150-250 285-381 (401)
118 TIGR03590 PseG pseudaminic aci 98.6 1.3E-06 2.8E-11 71.7 11.8 99 84-206 171-270 (279)
119 PF04464 Glyphos_transf: CDP-G 98.5 5.6E-06 1.2E-10 70.9 16.0 223 12-272 130-367 (369)
120 COG0381 WecB UDP-N-acetylgluco 98.5 2.3E-05 5E-10 65.3 18.7 204 39-276 163-372 (383)
121 PRK01021 lpxB lipid-A-disaccha 98.5 2.3E-05 5E-10 69.5 18.4 209 13-260 358-590 (608)
122 COG4641 Uncharacterized protei 98.5 4.9E-06 1.1E-10 68.7 12.8 199 43-278 160-365 (373)
123 PRK14986 glycogen phosphorylas 98.4 1.7E-05 3.7E-10 72.5 17.0 151 80-233 539-703 (815)
124 PF13528 Glyco_trans_1_3: Glyc 98.4 2.2E-06 4.8E-11 71.8 10.5 119 83-237 192-317 (318)
125 PF02350 Epimerase_2: UDP-N-ac 98.4 6.4E-06 1.4E-10 69.6 13.0 198 39-273 140-346 (346)
126 PF07429 Glyco_transf_56: 4-al 98.4 2.6E-05 5.6E-10 64.0 14.8 171 82-276 183-357 (360)
127 PF04101 Glyco_tran_28_C: Glyc 98.4 2.4E-07 5.1E-12 70.1 2.9 93 153-251 55-155 (167)
128 COG1819 Glycosyl transferases, 98.3 4.2E-05 9E-10 66.1 15.7 157 83-270 237-397 (406)
129 cd04300 GT1_Glycogen_Phosphory 98.3 3.4E-05 7.3E-10 70.7 15.6 212 18-232 419-689 (797)
130 PHA03392 egt ecdysteroid UDP-g 98.3 3.1E-05 6.7E-10 68.8 14.9 96 150-252 343-444 (507)
131 TIGR02093 P_ylase glycogen/sta 98.3 3.5E-05 7.6E-10 70.3 14.7 156 74-233 515-687 (794)
132 PRK14985 maltodextrin phosphor 98.0 8.5E-05 1.9E-09 67.8 11.8 155 75-233 518-689 (798)
133 PF00343 Phosphorylase: Carboh 98.0 0.0006 1.3E-08 61.9 16.2 155 75-232 433-603 (713)
134 PF04007 DUF354: Protein of un 97.9 0.00057 1.2E-08 57.2 14.5 181 12-238 121-308 (335)
135 KOG4626 O-linked N-acetylgluco 97.9 0.00055 1.2E-08 60.3 14.4 241 11-280 694-946 (966)
136 TIGR00661 MJ1255 conserved hyp 97.9 0.00016 3.4E-09 60.8 10.8 80 152-240 228-314 (321)
137 PRK14089 ipid-A-disaccharide s 97.8 0.00039 8.5E-09 58.6 11.2 92 83-202 167-260 (347)
138 PRK10017 colanic acid biosynth 97.8 0.013 2.8E-07 51.0 20.4 107 142-255 296-407 (426)
139 KOG1050 Trehalose-6-phosphate 97.7 0.004 8.7E-08 57.3 17.1 192 46-249 241-449 (732)
140 COG3980 spsG Spore coat polysa 97.5 0.0023 5E-08 51.1 11.2 139 86-252 161-305 (318)
141 PF00201 UDPGT: UDP-glucoronos 97.5 0.0017 3.8E-08 58.0 11.6 138 82-247 275-416 (500)
142 PLN02670 transferase, transfer 97.4 0.016 3.5E-07 51.1 16.1 116 155-275 341-466 (472)
143 COG1817 Uncharacterized protei 97.4 0.015 3.3E-07 47.3 14.4 182 12-242 122-316 (346)
144 PLN03007 UDP-glucosyltransfera 97.3 0.027 5.8E-07 50.1 17.0 84 153-241 345-441 (482)
145 PLN02448 UDP-glycosyltransfera 97.3 0.016 3.4E-07 51.3 15.3 84 153-241 323-416 (459)
146 PLN02562 UDP-glycosyltransfera 97.2 0.018 3.8E-07 50.7 14.8 88 153-247 328-420 (448)
147 PLN02208 glycosyltransferase f 97.1 0.04 8.6E-07 48.4 15.4 94 154-252 312-414 (442)
148 PLN02863 UDP-glucoronosyl/UDP- 97.1 0.078 1.7E-06 47.1 17.0 80 153-239 343-432 (477)
149 PLN02210 UDP-glucosyl transfer 97.0 0.031 6.6E-07 49.3 14.4 83 154-241 325-416 (456)
150 PLN02410 UDP-glucoronosyl/UDP- 97.0 0.029 6.2E-07 49.4 14.0 84 153-242 324-412 (451)
151 PF05159 Capsule_synth: Capsul 97.0 0.011 2.5E-07 48.2 10.7 106 82-205 115-227 (269)
152 PLN03004 UDP-glycosyltransfera 96.9 0.037 8.1E-07 48.6 13.8 85 153-242 334-426 (451)
153 PLN00414 glycosyltransferase f 96.9 0.09 2E-06 46.3 15.6 92 155-253 314-416 (446)
154 PLN02764 glycosyltransferase f 96.8 0.12 2.7E-06 45.4 15.7 119 154-277 318-448 (453)
155 PLN02167 UDP-glycosyltransfera 96.7 0.091 2E-06 46.7 15.0 81 154-241 341-435 (475)
156 PLN02554 UDP-glycosyltransfera 96.7 0.15 3.2E-06 45.4 16.1 85 153-244 342-445 (481)
157 PLN02555 limonoid glucosyltran 96.7 0.17 3.6E-06 45.0 15.9 93 152-252 336-440 (480)
158 PLN02173 UDP-glucosyl transfer 96.6 0.16 3.5E-06 44.7 15.0 84 153-241 317-409 (449)
159 PLN02992 coniferyl-alcohol glu 96.4 0.33 7.2E-06 43.1 15.9 82 154-240 339-427 (481)
160 TIGR02195 heptsyl_trn_II lipop 96.4 0.088 1.9E-06 44.5 12.1 108 72-202 162-276 (334)
161 PLN00164 glucosyltransferase; 96.4 0.33 7.3E-06 43.2 16.0 82 155-241 341-432 (480)
162 cd03789 GT1_LPS_heptosyltransf 96.3 0.049 1.1E-06 44.7 10.2 98 85-203 123-224 (279)
163 COG4671 Predicted glycosyl tra 96.3 0.13 2.9E-06 42.8 12.1 140 83-240 219-365 (400)
164 PF06258 Mito_fiss_Elm1: Mitoc 96.3 0.57 1.2E-05 39.1 16.1 120 73-206 136-259 (311)
165 KOG3349 Predicted glycosyltran 96.2 0.11 2.5E-06 37.6 9.8 101 85-204 5-108 (170)
166 PRK10964 ADP-heptose:LPS hepto 96.1 0.37 8E-06 40.5 14.3 97 83-202 178-278 (322)
167 PRK10422 lipopolysaccharide co 96.0 0.096 2.1E-06 44.6 10.6 101 83-202 183-287 (352)
168 TIGR02193 heptsyl_trn_I lipopo 95.9 0.34 7.3E-06 40.6 13.4 97 83-202 179-279 (319)
169 PRK10916 ADP-heptose:LPS hepto 95.8 0.22 4.8E-06 42.3 12.0 108 74-202 170-286 (348)
170 PLN02152 indole-3-acetate beta 95.6 0.86 1.9E-05 40.3 15.0 85 152-241 326-418 (455)
171 TIGR02201 heptsyl_trn_III lipo 95.6 0.34 7.3E-06 41.1 12.2 103 83-202 181-285 (344)
172 PLN02207 UDP-glycosyltransfera 95.5 0.97 2.1E-05 40.1 15.1 82 153-239 332-425 (468)
173 PF01075 Glyco_transf_9: Glyco 95.5 0.12 2.6E-06 41.5 8.9 103 82-202 104-208 (247)
174 KOG1192 UDP-glucuronosyl and U 95.2 1.1 2.3E-05 40.2 14.7 92 153-248 335-430 (496)
175 PLN02534 UDP-glycosyltransfera 95.1 2.3 5E-05 38.1 16.7 82 153-239 344-443 (491)
176 PF15024 Glyco_transf_18: Glyc 94.8 0.27 5.8E-06 43.8 9.2 99 162-274 333-455 (559)
177 PF10087 DUF2325: Uncharacteri 94.3 0.21 4.6E-06 33.7 6.1 80 125-210 2-89 (97)
178 COG0859 RfaF ADP-heptose:LPS h 94.2 0.6 1.3E-05 39.5 10.1 99 84-203 176-277 (334)
179 PF03016 Exostosin: Exostosin 93.2 0.092 2E-06 43.6 3.5 61 162-224 228-291 (302)
180 COG3660 Predicted nucleoside-d 93.2 3.8 8.2E-05 33.1 13.3 40 162-206 236-275 (329)
181 COG1927 Mtd Coenzyme F420-depe 92.1 4.5 9.8E-05 31.2 13.5 141 119-284 28-173 (277)
182 COG1887 TagB Putative glycosyl 91.9 7.8 0.00017 33.6 17.2 207 35-271 163-383 (388)
183 TIGR03609 S_layer_CsaB polysac 91.5 3.6 7.7E-05 34.1 10.8 72 122-203 205-276 (298)
184 PLN03015 UDP-glucosyl transfer 91.5 9.8 0.00021 33.9 14.6 80 155-239 337-425 (470)
185 smart00672 CAP10 Putative lipo 91.4 2.9 6.3E-05 33.9 9.8 94 182-276 154-250 (256)
186 KOG1021 Acetylglucosaminyltran 91.2 3.5 7.5E-05 36.7 10.9 133 121-262 289-433 (464)
187 PF05686 Glyco_transf_90: Glyc 90.5 2.9 6.2E-05 36.3 9.5 94 182-276 223-319 (395)
188 PF04230 PS_pyruv_trans: Polys 90.3 4.1 8.9E-05 32.8 10.1 36 162-204 249-284 (286)
189 PF11440 AGT: DNA alpha-glucos 89.6 6.3 0.00014 32.1 9.8 157 72-240 168-353 (355)
190 PRK05282 (alpha)-aspartyl dipe 88.3 11 0.00025 30.0 10.7 82 123-206 32-123 (233)
191 COG4370 Uncharacterized protei 88.1 1.6 3.5E-05 35.9 5.7 94 154-257 295-396 (412)
192 cd03146 GAT1_Peptidase_E Type 87.5 11 0.00023 29.6 10.1 85 121-205 30-123 (212)
193 PF01113 DapB_N: Dihydrodipico 87.4 1.8 3.8E-05 30.7 5.2 46 162-209 59-104 (124)
194 PF10093 DUF2331: Uncharacteri 87.0 13 0.00028 31.9 10.7 106 71-202 168-288 (374)
195 PRK00994 F420-dependent methyl 85.0 17 0.00038 28.8 13.4 96 119-238 28-128 (277)
196 PRK13940 glutamyl-tRNA reducta 84.3 26 0.00055 30.8 11.7 45 162-210 234-278 (414)
197 cd03129 GAT1_Peptidase_E_like 84.2 14 0.0003 28.8 9.3 86 121-206 28-124 (210)
198 PF13439 Glyco_transf_4: Glyco 84.1 0.88 1.9E-05 33.8 2.5 20 39-58 157-176 (177)
199 COG1519 KdtA 3-deoxy-D-manno-o 83.2 30 0.00065 30.1 11.4 113 71-203 31-153 (419)
200 KOG0780 Signal recognition par 81.7 34 0.00073 29.6 14.4 167 89-273 159-341 (483)
201 PRK05583 ribosomal protein L7A 80.4 15 0.00032 25.2 7.1 78 98-193 21-98 (104)
202 TIGR03837 efp_adjacent_2 conse 79.5 39 0.00084 28.9 10.6 107 71-202 167-286 (371)
203 PRK13761 hypothetical protein; 79.4 29 0.00063 27.4 9.0 136 121-277 95-244 (248)
204 COG2327 WcaK Polysaccharide py 79.0 42 0.00091 29.0 14.8 86 153-245 266-356 (385)
205 PRK04175 rpl7ae 50S ribosomal 78.6 18 0.00039 25.6 7.3 60 97-171 33-92 (122)
206 PF01993 MTD: methylene-5,6,7, 78.4 30 0.00066 27.5 8.9 97 119-239 27-128 (276)
207 PRK05562 precorrin-2 dehydroge 77.6 33 0.00073 27.2 14.4 124 121-257 47-179 (223)
208 COG4394 Uncharacterized protei 77.4 24 0.00052 29.0 8.3 106 72-202 165-282 (370)
209 PRK10840 transcriptional regul 76.5 34 0.00073 26.6 10.3 111 122-239 3-125 (216)
210 KOG0832 Mitochondrial/chloropl 75.8 38 0.00082 26.8 12.1 71 151-238 162-233 (251)
211 cd05565 PTS_IIB_lactose PTS_II 75.6 11 0.00023 25.6 5.2 74 125-204 4-80 (99)
212 cd01020 TroA_b Metal binding p 74.8 36 0.00079 27.7 9.2 89 164-257 46-136 (264)
213 PLN02929 NADH kinase 74.6 23 0.00049 29.5 7.8 93 139-240 36-137 (301)
214 PRK00048 dihydrodipicolinate r 74.2 20 0.00043 29.1 7.5 43 162-206 52-94 (257)
215 COG0373 HemA Glutamyl-tRNA red 72.8 66 0.0014 28.2 15.8 90 123-224 203-296 (414)
216 PF10933 DUF2827: Protein of u 72.5 45 0.00098 28.4 9.1 110 140-262 238-351 (364)
217 PRK07714 hypothetical protein; 71.9 28 0.0006 23.6 7.0 58 98-171 22-79 (100)
218 cd01080 NAD_bind_m-THF_DH_Cycl 71.8 17 0.00038 27.3 6.1 52 121-179 43-96 (168)
219 PRK13398 3-deoxy-7-phosphohept 70.5 58 0.0013 26.6 12.2 104 87-204 29-142 (266)
220 PF02006 DUF137: Protein of un 69.0 43 0.00093 25.1 7.3 87 168-268 87-174 (178)
221 PF10649 DUF2478: Protein of u 68.7 8.1 0.00018 28.7 3.7 37 169-205 92-132 (159)
222 PF13241 NAD_binding_7: Putati 68.4 30 0.00066 23.4 6.3 47 163-211 53-100 (103)
223 TIGR01768 GGGP-family geranylg 67.7 17 0.00036 28.8 5.4 55 121-179 26-80 (223)
224 PF04392 ABC_sub_bind: ABC tra 67.5 32 0.00069 28.4 7.5 77 137-217 147-228 (294)
225 COG1701 Uncharacterized protei 67.3 58 0.0013 25.4 9.0 95 168-276 151-246 (256)
226 TIGR02069 cyanophycinase cyano 66.7 68 0.0015 26.0 10.3 86 121-207 27-127 (250)
227 KOG2648 Diphthamide biosynthes 66.3 31 0.00068 30.2 7.1 57 122-178 267-325 (453)
228 PF12996 DUF3880: DUF based on 65.9 10 0.00022 24.4 3.3 46 11-63 13-58 (79)
229 PF04413 Glycos_transf_N: 3-De 65.9 17 0.00036 27.9 5.1 100 84-203 22-125 (186)
230 PF01297 TroA: Periplasmic sol 65.5 35 0.00076 27.5 7.2 87 166-256 43-132 (256)
231 PRK10360 DNA-binding transcrip 64.8 57 0.0012 24.4 9.7 67 170-239 47-117 (196)
232 KOG2884 26S proteasome regulat 64.5 68 0.0015 25.2 9.0 102 123-239 108-228 (259)
233 COG0803 LraI ABC-type metal io 64.4 58 0.0013 27.2 8.4 89 166-257 77-174 (303)
234 PRK10017 colanic acid biosynth 64.2 1E+02 0.0022 27.2 10.6 42 162-203 109-155 (426)
235 TIGR03677 rpl7ae 50S ribosomal 64.2 47 0.001 23.3 7.4 59 97-170 29-87 (117)
236 COG2984 ABC-type uncharacteriz 64.0 49 0.0011 27.7 7.6 86 121-206 157-249 (322)
237 TIGR01769 GGGP geranylgeranylg 63.6 40 0.00087 26.3 6.8 73 93-179 5-78 (205)
238 PRK10494 hypothetical protein; 63.5 80 0.0017 25.7 9.7 82 121-205 120-210 (259)
239 PRK07283 hypothetical protein; 63.4 38 0.00083 22.8 5.9 75 98-191 22-96 (98)
240 cd05564 PTS_IIB_chitobiose_lic 62.5 30 0.00066 23.1 5.3 77 125-206 3-81 (96)
241 COG0673 MviM Predicted dehydro 62.3 94 0.002 26.1 9.6 57 139-203 40-98 (342)
242 PF02302 PTS_IIB: PTS system, 62.3 21 0.00046 23.2 4.5 54 125-179 3-56 (90)
243 PF00852 Glyco_transf_10: Glyc 61.9 15 0.00033 31.3 4.7 94 154-249 203-307 (349)
244 COG3563 KpsC Capsule polysacch 61.9 33 0.0007 30.5 6.4 54 148-208 203-256 (671)
245 PF01408 GFO_IDH_MocA: Oxidore 60.3 53 0.0011 22.5 9.9 68 121-203 24-93 (120)
246 cd01018 ZntC Metal binding pro 60.3 71 0.0015 26.0 8.1 87 165-256 46-152 (266)
247 PRK14077 pnk inorganic polypho 60.1 98 0.0021 25.7 8.8 55 168-240 62-120 (287)
248 PF09949 DUF2183: Uncharacteri 59.4 28 0.0006 23.6 4.6 27 120-149 62-88 (100)
249 cd01016 TroA Metal binding pro 59.0 84 0.0018 25.8 8.4 89 165-256 45-141 (276)
250 TIGR00075 hypD hydrogenase exp 58.3 90 0.0019 26.8 8.3 83 120-204 134-226 (369)
251 TIGR00853 pts-lac PTS system, 57.2 56 0.0012 21.9 5.9 78 125-207 7-86 (95)
252 TIGR01761 thiaz-red thiazoliny 56.5 1.3E+02 0.0028 25.8 9.4 91 84-203 3-97 (343)
253 TIGR00272 DPH2 diphthamide bio 56.4 60 0.0013 29.3 7.4 75 122-202 282-359 (496)
254 PRK12862 malic enzyme; Reviewe 55.0 2E+02 0.0044 27.7 11.1 76 119-202 190-290 (763)
255 cd01017 AdcA Metal binding pro 54.9 1E+02 0.0022 25.4 8.2 88 165-256 47-153 (282)
256 TIGR00288 conserved hypothetic 54.8 88 0.0019 23.4 7.7 67 97-178 89-156 (160)
257 COG4565 CitB Response regulato 54.7 1E+02 0.0023 24.2 7.5 34 206-241 88-121 (224)
258 PTZ00254 40S ribosomal protein 54.5 1.1E+02 0.0025 24.6 10.3 112 95-225 51-166 (249)
259 PF11071 DUF2872: Protein of u 54.1 12 0.00027 26.5 2.2 69 165-238 67-140 (141)
260 COG0062 Uncharacterized conser 53.9 1E+02 0.0023 24.0 13.0 116 72-206 38-161 (203)
261 cd03145 GAT1_cyanophycinase Ty 53.9 1.1E+02 0.0023 24.1 9.4 84 122-206 29-127 (217)
262 PRK13602 putative ribosomal pr 53.8 59 0.0013 21.1 5.9 54 98-167 15-68 (82)
263 PRK05749 3-deoxy-D-manno-octul 53.5 1.5E+02 0.0032 25.9 9.6 101 83-203 50-154 (425)
264 PF04312 DUF460: Protein of un 53.3 40 0.00087 24.3 4.7 60 188-247 68-135 (138)
265 TIGR03682 arCOG04112 arCOG0411 52.9 60 0.0013 27.2 6.6 72 125-203 216-290 (308)
266 PF11238 DUF3039: Protein of u 52.8 12 0.00026 22.4 1.7 16 187-202 15-30 (58)
267 PRK04020 rps2P 30S ribosomal p 52.7 1.1E+02 0.0024 23.9 12.6 147 96-269 49-199 (204)
268 PF13263 PHP_C: PHP-associated 52.1 7 0.00015 23.2 0.7 45 189-235 8-52 (56)
269 PF00185 OTCace: Aspartate/orn 51.9 96 0.0021 23.0 9.0 78 84-179 2-82 (158)
270 PF03949 Malic_M: Malic enzyme 51.9 1.3E+02 0.0027 24.5 7.9 39 163-202 97-139 (255)
271 PRK10310 PTS system galactitol 51.8 27 0.00059 23.3 3.6 54 125-179 6-59 (94)
272 TIGR00322 diphth2_R diphthamid 50.9 72 0.0016 27.1 6.8 72 125-202 236-310 (332)
273 cd01019 ZnuA Zinc binding prot 50.3 1.4E+02 0.0031 24.6 9.0 36 165-202 47-82 (286)
274 PRK00676 hemA glutamyl-tRNA re 50.1 1.6E+02 0.0035 25.1 13.8 122 121-256 173-306 (338)
275 PF13788 DUF4180: Domain of un 49.6 61 0.0013 22.6 5.1 42 121-164 68-109 (113)
276 TIGR00730 conserved hypothetic 49.6 81 0.0017 24.0 6.3 40 162-205 88-135 (178)
277 PF03401 TctC: Tripartite tric 49.4 1.5E+02 0.0032 24.3 11.7 142 86-251 80-243 (274)
278 PRK05395 3-dehydroquinate dehy 49.2 1E+02 0.0022 22.6 7.9 64 171-239 68-141 (146)
279 PRK09545 znuA high-affinity zi 49.1 1.6E+02 0.0035 24.7 8.8 31 227-257 154-186 (311)
280 cd05312 NAD_bind_1_malic_enz N 48.9 1.5E+02 0.0033 24.4 9.7 40 162-202 95-138 (279)
281 PRK13396 3-deoxy-7-phosphohept 48.6 1.8E+02 0.0038 25.0 11.6 104 86-203 102-215 (352)
282 cd01795 USP48_C USP ubiquitin- 48.3 85 0.0018 21.3 5.9 65 14-91 13-77 (107)
283 COG1646 Predicted phosphate-bi 47.7 95 0.0021 24.8 6.4 55 121-179 40-95 (240)
284 PRK01018 50S ribosomal protein 47.6 86 0.0019 21.2 5.7 57 98-169 20-76 (99)
285 PRK13397 3-deoxy-7-phosphohept 47.3 1.5E+02 0.0033 24.0 11.5 100 90-204 20-130 (250)
286 PF13689 DUF4154: Domain of un 47.2 97 0.0021 22.5 6.3 70 121-202 26-97 (145)
287 PRK13015 3-dehydroquinate dehy 47.0 1.1E+02 0.0024 22.4 7.8 65 170-239 67-141 (146)
288 PRK09590 celB cellobiose phosp 46.8 79 0.0017 21.6 5.3 75 125-204 5-83 (104)
289 PF13169 Poxvirus_B22R_N: Poxv 46.7 69 0.0015 21.4 4.8 32 253-284 44-76 (92)
290 PF00240 ubiquitin: Ubiquitin 46.6 64 0.0014 19.6 4.6 52 23-88 13-64 (69)
291 COG0036 Rpe Pentose-5-phosphat 46.1 97 0.0021 24.5 6.3 47 138-186 97-145 (220)
292 PRK13125 trpA tryptophan synth 46.0 1.3E+02 0.0029 24.1 7.5 72 96-179 87-160 (244)
293 PRK13601 putative L7Ae-like ri 45.6 83 0.0018 20.4 5.8 54 98-167 12-65 (82)
294 PRK13302 putative L-aspartate 45.5 1.3E+02 0.0029 24.6 7.4 71 121-205 30-100 (271)
295 cd02071 MM_CoA_mut_B12_BD meth 45.3 1E+02 0.0023 21.5 6.1 14 44-57 26-39 (122)
296 PF05014 Nuc_deoxyrib_tr: Nucl 45.1 21 0.00046 24.6 2.4 38 166-204 57-97 (113)
297 PRK04885 ppnK inorganic polyph 45.0 1.7E+02 0.0037 23.9 8.4 54 169-240 34-93 (265)
298 TIGR01088 aroQ 3-dehydroquinat 44.9 1.2E+02 0.0026 22.1 8.3 94 138-238 29-138 (141)
299 COG1618 Predicted nucleotide k 44.9 99 0.0021 23.3 5.8 74 163-239 93-176 (179)
300 TIGR01361 DAHP_synth_Bsub phos 44.3 1.7E+02 0.0038 23.8 9.4 63 137-204 76-140 (260)
301 COG2454 Uncharacterized conser 44.2 1.5E+02 0.0033 23.0 7.8 81 95-178 105-188 (211)
302 TIGR02853 spore_dpaA dipicolin 44.0 1.9E+02 0.004 24.0 8.2 71 121-200 150-237 (287)
303 PRK12861 malic enzyme; Reviewe 44.0 3.1E+02 0.0066 26.5 10.7 76 119-202 186-286 (764)
304 TIGR03316 ygeW probable carbam 43.9 2.1E+02 0.0046 24.6 13.3 53 121-178 200-253 (357)
305 PF01866 Diphthamide_syn: Puta 43.7 69 0.0015 26.8 5.6 75 122-202 210-287 (307)
306 COG0052 RpsB Ribosomal protein 43.4 43 0.00092 26.9 4.0 34 186-224 169-203 (252)
307 cd01137 PsaA Metal binding pro 43.3 1.4E+02 0.003 24.7 7.3 88 165-256 61-157 (287)
308 PF00205 TPP_enzyme_M: Thiamin 42.8 53 0.0012 23.4 4.3 53 125-178 15-85 (137)
309 PF14597 Lactamase_B_5: Metall 42.3 66 0.0014 24.6 4.6 44 97-148 155-198 (199)
310 COG3414 SgaB Phosphotransferas 41.4 45 0.00098 22.3 3.4 54 125-179 5-58 (93)
311 COG2204 AtoC Response regulato 40.7 2.7E+02 0.0059 25.0 10.6 101 138-243 16-125 (464)
312 TIGR03646 YtoQ_fam YtoQ family 40.6 22 0.00047 25.4 1.8 68 165-237 70-142 (144)
313 TIGR01544 HAD-SF-IE haloacid d 40.3 2.1E+02 0.0046 23.6 9.0 48 121-178 210-264 (277)
314 PF03447 NAD_binding_3: Homose 40.2 38 0.00083 23.4 3.1 45 162-208 49-95 (117)
315 cd05566 PTS_IIB_galactitol PTS 39.8 54 0.0012 21.3 3.7 54 125-179 4-57 (89)
316 PRK05447 1-deoxy-D-xylulose 5- 39.6 1.7E+02 0.0036 25.5 7.3 85 96-203 36-122 (385)
317 PF03435 Saccharop_dh: Sacchar 39.4 1.6E+02 0.0035 25.4 7.5 72 121-203 21-98 (386)
318 COG1570 XseA Exonuclease VII, 39.2 2.8E+02 0.006 24.6 11.9 14 189-202 218-231 (440)
319 COG1736 DPH2 Diphthamide synth 38.3 1.1E+02 0.0023 26.2 5.8 77 121-203 238-316 (347)
320 PLN02819 lysine-ketoglutarate 38.0 2E+02 0.0044 28.8 8.4 62 139-203 616-679 (1042)
321 PF02630 SCO1-SenC: SCO1/SenC; 38.0 1.7E+02 0.0038 21.9 8.7 87 83-175 52-138 (174)
322 TIGR01658 EYA-cons_domain eyes 37.9 1.4E+02 0.003 24.2 6.0 52 104-170 217-268 (274)
323 PRK04169 geranylgeranylglycery 37.7 1E+02 0.0022 24.6 5.4 55 121-179 31-85 (232)
324 PF06345 Drf_DAD: DRF Autoregu 37.6 29 0.00063 14.1 1.2 10 188-197 5-14 (15)
325 CHL00067 rps2 ribosomal protei 37.3 1.7E+02 0.0036 23.4 6.6 59 171-238 162-221 (230)
326 cd05212 NAD_bind_m-THF_DH_Cycl 37.3 1.6E+02 0.0035 21.4 8.9 72 119-200 25-97 (140)
327 KOG2423 Nucleolar GTPase [Gene 37.1 2.9E+02 0.0064 24.3 8.2 48 81-132 270-317 (572)
328 PRK12595 bifunctional 3-deoxy- 36.8 2.8E+02 0.006 23.9 11.7 92 99-204 131-233 (360)
329 cd01805 RAD23_N Ubiquitin-like 36.7 85 0.0018 19.6 4.1 52 25-90 20-73 (77)
330 PRK15062 hydrogenase isoenzyme 36.4 2.8E+02 0.0061 23.9 8.3 83 120-204 128-220 (364)
331 PTZ00106 60S ribosomal protein 36.3 1.4E+02 0.0031 20.5 5.8 46 121-169 40-85 (108)
332 KOG2619 Fucosyltransferase [Ca 36.1 1.4E+02 0.003 25.8 6.2 86 163-251 243-330 (372)
333 PRK06683 hypothetical protein; 35.8 1.2E+02 0.0027 19.6 5.9 41 98-152 15-55 (82)
334 cd00466 DHQase_II Dehydroquina 35.5 1.7E+02 0.0038 21.2 7.8 63 171-238 66-138 (140)
335 PF06506 PrpR_N: Propionate ca 35.4 1.3E+02 0.0029 22.6 5.7 96 139-239 64-165 (176)
336 PF01884 PcrB: PcrB family; I 34.6 1.8E+02 0.0038 23.3 6.2 73 90-179 11-84 (230)
337 KOG2741 Dimeric dihydrodiol de 34.5 2.6E+02 0.0056 23.9 7.4 60 138-203 42-103 (351)
338 TIGR00036 dapB dihydrodipicoli 34.2 55 0.0012 26.7 3.5 43 162-206 60-102 (266)
339 PRK15424 propionate catabolism 33.9 3.8E+02 0.0082 24.7 10.2 94 140-239 95-194 (538)
340 TIGR03569 NeuB_NnaB N-acetylne 33.9 2.1E+02 0.0045 24.4 6.9 61 138-203 77-140 (329)
341 PF00072 Response_reg: Respons 33.7 1.4E+02 0.0031 19.7 7.6 94 138-235 10-112 (112)
342 PF01531 Glyco_transf_11: Glyc 33.1 1.7E+02 0.0037 24.3 6.4 63 99-178 190-255 (298)
343 COG1628 Endonuclease V homolog 32.9 2.3E+02 0.0049 21.8 6.3 62 172-252 71-134 (185)
344 cd00027 BRCT Breast Cancer Sup 32.5 98 0.0021 18.1 3.9 64 123-203 2-65 (72)
345 PRK13793 nicotinamide-nucleoti 32.2 1E+02 0.0023 23.9 4.5 35 86-131 6-41 (196)
346 TIGR00725 conserved hypothetic 32.1 82 0.0018 23.4 3.9 37 165-205 86-124 (159)
347 TIGR01011 rpsB_bact ribosomal 31.9 2.3E+02 0.0051 22.5 6.6 60 171-239 156-216 (225)
348 PF03575 Peptidase_S51: Peptid 31.8 87 0.0019 22.9 4.0 65 139-205 2-78 (154)
349 PF14639 YqgF: Holliday-juncti 31.5 88 0.0019 23.0 3.9 72 96-175 45-119 (150)
350 PRK05331 putative phosphate ac 31.5 3.3E+02 0.0071 23.2 9.5 95 95-193 148-243 (334)
351 PRK10834 vancomycin high tempe 31.3 2.8E+02 0.0061 22.3 9.5 80 121-203 81-168 (239)
352 PRK11543 gutQ D-arabinose 5-ph 31.3 2.6E+02 0.0056 23.3 7.3 76 124-204 44-124 (321)
353 PRK01231 ppnK inorganic polyph 31.2 3.1E+02 0.0068 22.8 8.2 54 169-240 61-118 (295)
354 PF05822 UMPH-1: Pyrimidine 5' 31.1 85 0.0018 25.3 4.0 115 20-178 109-232 (246)
355 PF14359 DUF4406: Domain of un 31.1 1E+02 0.0023 20.5 3.9 34 166-201 55-91 (92)
356 COG5017 Uncharacterized conser 30.7 73 0.0016 23.1 3.2 52 155-212 48-102 (161)
357 PRK09190 hypothetical protein; 30.5 2.8E+02 0.006 22.0 6.8 67 121-193 126-198 (220)
358 PLN02825 amino-acid N-acetyltr 29.9 2.3E+02 0.0049 25.9 6.9 58 81-154 16-73 (515)
359 PRK13181 hisH imidazole glycer 29.8 2.6E+02 0.0056 21.5 7.3 60 138-203 11-79 (199)
360 TIGR01012 Sa_S2_E_A ribosomal 29.7 2.7E+02 0.0058 21.6 12.6 123 96-239 43-169 (196)
361 PRK03743 pdxA 4-hydroxythreoni 29.5 3.6E+02 0.0077 23.0 8.5 124 99-238 181-324 (332)
362 PF12119 DUF3581: Protein of u 29.5 23 0.00049 27.5 0.5 54 139-203 111-166 (218)
363 PF07355 GRDB: Glycine/sarcosi 29.4 3.6E+02 0.0077 23.1 7.4 38 170-207 80-122 (349)
364 PRK03501 ppnK inorganic polyph 29.2 3.2E+02 0.007 22.4 7.5 55 169-240 38-97 (264)
365 cd01750 GATase1_CobQ Type 1 gl 29.1 2E+02 0.0044 22.1 5.8 58 139-202 12-78 (194)
366 cd01804 midnolin_N Ubiquitin-l 29.1 1.6E+02 0.0034 18.7 4.8 53 24-91 20-72 (78)
367 TIGR03586 PseI pseudaminic aci 29.1 2.8E+02 0.006 23.6 6.9 61 138-203 78-141 (327)
368 COG3562 KpsS Capsule polysacch 29.1 3.7E+02 0.008 23.0 8.5 73 121-202 269-343 (403)
369 CHL00073 chlN photochlorophyll 29.0 4.3E+02 0.0093 23.7 16.9 146 43-205 97-270 (457)
370 cd01828 sialate_O-acetylestera 28.6 2.4E+02 0.0051 20.6 10.6 75 45-132 21-97 (169)
371 TIGR01278 DPOR_BchB light-inde 28.5 4.6E+02 0.0099 23.9 14.5 75 122-201 158-238 (511)
372 COG2247 LytB Putative cell wal 28.3 3.7E+02 0.008 22.8 7.6 72 121-203 76-162 (337)
373 PF00389 2-Hacid_dh: D-isomer 28.2 2.2E+02 0.0047 20.1 9.1 62 141-209 10-73 (133)
374 cd01145 TroA_c Periplasmic bin 28.1 2.8E+02 0.0061 21.4 7.2 36 219-256 111-148 (203)
375 cd01841 NnaC_like NnaC (CMP-Ne 28.1 2.4E+02 0.0053 20.7 10.5 77 44-132 22-100 (174)
376 TIGR02536 eut_hyp ethanolamine 28.1 81 0.0018 24.7 3.4 39 167-205 50-99 (207)
377 PF08472 S6PP_C: Sucrose-6-pho 27.8 1.1E+02 0.0024 21.9 3.7 62 18-95 38-99 (133)
378 KOG3107 Predicted haloacid deh 27.8 2.3E+02 0.005 24.6 6.1 44 121-174 423-466 (468)
379 PRK07200 aspartate/ornithine c 27.8 4.2E+02 0.0091 23.2 11.1 53 121-178 217-270 (395)
380 cd02168 NMNAT_Nudix Nicotinami 27.7 2.8E+02 0.006 21.1 6.9 21 88-108 3-24 (181)
381 PRK07232 bifunctional malic en 27.7 5.7E+02 0.012 24.7 11.9 76 119-202 182-282 (752)
382 cd06259 YdcF-like YdcF-like. Y 27.5 2.4E+02 0.0051 20.3 8.8 74 121-197 34-119 (150)
383 PRK08223 hypothetical protein; 27.5 3.5E+02 0.0075 22.5 7.1 44 162-207 109-155 (287)
384 PRK06843 inosine 5-monophospha 27.0 1.4E+02 0.0031 26.2 4.9 70 168-239 10-89 (404)
385 PRK08306 dipicolinate synthase 26.8 3.6E+02 0.0077 22.4 7.2 41 163-203 48-101 (296)
386 cd01836 FeeA_FeeB_like SGNH_hy 26.8 2.7E+02 0.0059 20.8 11.9 45 83-130 68-114 (191)
387 PLN00203 glutamyl-tRNA reducta 26.7 5E+02 0.011 23.8 16.1 98 124-232 292-397 (519)
388 PLN03129 NADP-dependent malic 26.7 5.2E+02 0.011 24.0 11.0 82 119-202 318-434 (581)
389 PF00533 BRCT: BRCA1 C Terminu 26.4 1.6E+02 0.0035 18.0 4.6 66 121-203 7-72 (78)
390 KOG4180 Predicted kinase [Gene 26.3 2.6E+02 0.0057 23.7 6.0 86 138-239 76-165 (395)
391 COG0608 RecJ Single-stranded D 26.2 4.9E+02 0.011 23.5 12.0 99 99-209 19-126 (491)
392 PF09152 DUF1937: Domain of un 26.2 1E+02 0.0022 21.6 3.2 36 166-201 75-113 (116)
393 TIGR01917 gly_red_sel_B glycin 26.1 4.3E+02 0.0094 23.4 7.5 37 170-206 76-117 (431)
394 cd01807 GDX_N ubiquitin-like d 26.1 1.2E+02 0.0026 18.9 3.4 51 25-89 20-70 (74)
395 PRK06932 glycerate dehydrogena 26.0 4E+02 0.0086 22.4 7.9 78 122-206 147-236 (314)
396 PLN02765 pyruvate kinase 25.8 5.2E+02 0.011 23.7 8.4 108 133-242 229-370 (526)
397 COG1056 NadR Nicotinamide mono 25.6 3E+02 0.0066 20.9 8.2 64 85-159 4-76 (172)
398 COG0409 HypD Hydrogenase matur 25.4 2.4E+02 0.0053 23.9 5.7 82 121-204 131-221 (364)
399 cd01796 DDI1_N DNA damage indu 25.2 1.4E+02 0.003 18.5 3.5 30 26-55 20-49 (71)
400 KOG0368 Acetyl-CoA carboxylase 25.1 3E+02 0.0066 28.9 7.1 33 189-221 183-215 (2196)
401 cd01797 NIRF_N amino-terminal 24.9 1.4E+02 0.0031 18.9 3.6 51 25-89 22-72 (78)
402 cd01967 Nitrogenase_MoFe_alpha 24.9 4.6E+02 0.01 22.8 20.1 98 96-201 135-236 (406)
403 COG1057 NadD Nicotinic acid mo 24.8 3.3E+02 0.0072 21.1 7.3 106 41-179 30-136 (197)
404 cd04502 SGNH_hydrolase_like_7 24.8 2.8E+02 0.0061 20.3 8.4 76 43-130 20-97 (171)
405 PRK02649 ppnK inorganic polyph 24.2 4.3E+02 0.0093 22.2 8.9 55 168-240 66-124 (305)
406 cd01820 PAF_acetylesterase_lik 24.2 3.2E+02 0.0069 21.1 6.2 46 83-131 90-137 (214)
407 PRK08410 2-hydroxyacid dehydro 24.1 4.3E+02 0.0093 22.1 8.2 77 122-205 145-234 (311)
408 COG3340 PepE Peptidase E [Amin 23.9 3.7E+02 0.008 21.3 10.3 83 121-206 33-128 (224)
409 PF00926 DHBP_synthase: 3,4-di 23.8 1.3E+02 0.0029 23.3 3.8 19 188-206 3-21 (194)
410 cd01800 SF3a120_C Ubiquitin-li 23.8 1.9E+02 0.0042 18.1 4.2 52 25-90 17-68 (76)
411 PRK15482 transcriptional regul 23.8 4.1E+02 0.0089 21.7 8.1 92 124-222 137-235 (285)
412 PRK05773 3,4-dihydroxy-2-butan 23.8 1.7E+02 0.0036 23.2 4.4 18 188-205 5-22 (219)
413 TIGR01285 nifN nitrogenase mol 23.7 5.2E+02 0.011 22.9 11.3 31 12-43 230-260 (432)
414 PF01008 IF-2B: Initiation fac 23.7 4.1E+02 0.0088 21.7 8.3 76 121-202 132-216 (282)
415 KOG1185 Thiamine pyrophosphate 23.6 3.4E+02 0.0073 24.6 6.5 71 99-179 204-285 (571)
416 COG3456 Predicted component of 23.4 2.2E+02 0.0047 25.0 5.2 55 210-269 319-373 (430)
417 PF02056 Glyco_hydro_4: Family 23.3 1.1E+02 0.0023 23.5 3.2 56 121-179 27-82 (183)
418 cd01831 Endoglucanase_E_like E 23.2 3.1E+02 0.0067 20.1 9.3 44 84-130 57-104 (169)
419 PF00290 Trp_syntA: Tryptophan 23.1 4.2E+02 0.0091 21.6 10.2 128 83-236 87-235 (259)
420 PF05524 PEP-utilisers_N: PEP- 23.1 2.5E+02 0.0054 19.5 4.9 46 228-273 67-112 (123)
421 PF00148 Oxidored_nitro: Nitro 23.0 5E+02 0.011 22.5 17.4 118 72-202 98-222 (398)
422 COG2875 CobM Precorrin-4 methy 23.0 4.1E+02 0.0088 21.4 7.3 12 166-177 24-35 (254)
423 PF10137 TIR-like: Predicted n 22.9 2.9E+02 0.0062 19.7 5.3 38 138-175 12-55 (125)
424 COG0757 AroQ 3-dehydroquinate 22.9 3.1E+02 0.0067 20.0 5.8 61 173-238 70-139 (146)
425 PRK13304 L-aspartate dehydroge 22.8 1E+02 0.0022 25.2 3.2 43 162-206 53-95 (265)
426 PF00308 Bac_DnaA: Bacterial d 22.7 3.8E+02 0.0083 21.0 11.4 110 163-276 90-213 (219)
427 COG2845 Uncharacterized protei 22.6 4.8E+02 0.01 22.2 8.9 43 11-53 110-153 (354)
428 TIGR00557 pdxA 4-hydroxythreon 22.6 4.8E+02 0.01 22.1 8.8 127 99-238 173-317 (320)
429 COG0159 TrpA Tryptophan syntha 22.5 4.4E+02 0.0095 21.6 7.0 75 85-175 97-174 (265)
430 COG3181 Uncharacterized protei 22.5 4.8E+02 0.01 22.1 9.7 161 89-272 127-305 (319)
431 cd05014 SIS_Kpsf KpsF-like pro 22.4 2.7E+02 0.0059 19.2 6.7 77 124-205 2-83 (128)
432 PLN02928 oxidoreductase family 22.4 5E+02 0.011 22.2 9.3 78 122-206 159-265 (347)
433 PF03102 NeuB: NeuB family; I 22.3 3.6E+02 0.0078 21.7 6.2 62 138-204 57-121 (241)
434 TIGR00601 rad23 UV excision re 22.2 1.6E+02 0.0034 25.6 4.4 55 25-93 20-77 (378)
435 PF00224 PK: Pyruvate kinase, 22.2 2E+02 0.0044 24.6 5.0 100 137-239 202-336 (348)
436 cd01815 BMSC_UbP_N Ubiquitin-l 22.1 2.2E+02 0.0049 18.1 4.3 55 21-89 16-73 (75)
437 PLN02727 NAD kinase 22.0 8E+02 0.017 24.5 9.3 57 166-240 739-799 (986)
438 TIGR03855 NAD_NadX aspartate d 22.0 4.1E+02 0.009 21.2 8.6 59 139-206 12-71 (229)
439 PF12683 DUF3798: Protein of u 22.0 3.6E+02 0.0079 22.2 6.0 24 155-178 90-114 (275)
440 TIGR02130 dapB_plant dihydrodi 21.9 1.4E+02 0.0031 24.5 3.9 68 154-223 48-124 (275)
441 TIGR02690 resist_ArsH arsenica 21.8 4.1E+02 0.0089 21.0 8.3 94 85-202 28-134 (219)
442 smart00292 BRCT breast cancer 21.8 1.9E+02 0.0042 17.3 4.4 68 121-203 4-71 (80)
443 cd02812 PcrB_like PcrB_like pr 21.6 3.5E+02 0.0075 21.5 5.8 55 121-179 24-79 (219)
444 KOG2458 Endoplasmic reticulum 21.6 4.2E+02 0.0091 23.8 6.6 50 227-276 396-445 (528)
445 PRK05312 pdxA 4-hydroxythreoni 21.5 5.2E+02 0.011 22.1 8.7 126 99-238 185-329 (336)
446 PF06941 NT5C: 5' nucleotidase 21.5 1.3E+02 0.0027 23.0 3.4 114 90-235 69-186 (191)
447 PRK00910 ribB 3,4-dihydroxy-2- 21.4 1.9E+02 0.004 23.0 4.2 18 188-205 19-36 (218)
448 TIGR01819 F420_cofD LPPG:FO 2- 21.4 1.2E+02 0.0026 25.3 3.3 47 154-201 161-217 (297)
449 PRK06487 glycerate dehydrogena 21.4 5E+02 0.011 21.8 7.9 77 123-206 149-236 (317)
450 PF00318 Ribosomal_S2: Ribosom 21.4 4E+02 0.0088 20.8 6.7 58 171-237 144-202 (211)
451 PRK00014 ribB 3,4-dihydroxy-2- 21.3 2E+02 0.0043 23.0 4.3 18 188-205 23-40 (230)
452 TIGR01283 nifE nitrogenase mol 21.2 5.9E+02 0.013 22.7 18.7 99 96-201 168-273 (456)
453 PRK06718 precorrin-2 dehydroge 21.1 4E+02 0.0087 20.6 16.5 78 121-211 32-109 (202)
454 PF14053 DUF4248: Domain of un 21.0 74 0.0016 19.9 1.6 39 227-265 21-60 (69)
455 PRK13837 two-component VirA-li 21.0 7.8E+02 0.017 24.0 9.8 94 138-239 709-813 (828)
456 cd01791 Ubl5 UBL5 ubiquitin-li 21.0 2.3E+02 0.0049 17.8 4.1 29 25-53 21-49 (73)
457 cd01839 SGNH_arylesterase_like 20.9 3.9E+02 0.0084 20.4 10.8 89 44-132 40-135 (208)
458 TIGR00125 cyt_tran_rel cytidyl 20.8 2E+02 0.0043 17.0 3.8 23 87-109 2-25 (66)
459 cd01452 VWA_26S_proteasome_sub 20.8 4E+02 0.0086 20.5 8.9 13 41-53 44-56 (187)
460 PF06283 ThuA: Trehalose utili 20.7 3.1E+02 0.0067 21.3 5.5 36 167-203 49-88 (217)
461 COG1692 Calcineurin-like phosp 20.7 4.7E+02 0.01 21.3 8.4 84 86-179 2-90 (266)
462 PRK13846 putative glycerol-3-p 20.7 5.2E+02 0.011 21.9 6.9 57 91-159 8-64 (316)
463 PRK01792 ribB 3,4-dihydroxy-2- 20.6 2.2E+02 0.0048 22.4 4.5 18 188-205 18-35 (214)
464 PRK06015 keto-hydroxyglutarate 20.6 2.9E+02 0.0063 21.5 5.1 43 154-200 78-121 (201)
465 PRK13846 putative glycerol-3-p 20.5 1.6E+02 0.0034 24.9 3.8 113 118-238 173-300 (316)
466 PF11440 AGT: DNA alpha-glucos 20.5 2.1E+02 0.0046 23.7 4.4 27 162-190 112-138 (355)
467 PRK15408 autoinducer 2-binding 20.3 5.3E+02 0.012 21.8 9.3 36 169-205 79-114 (336)
468 PF00899 ThiF: ThiF family; I 20.3 2.3E+02 0.0049 20.1 4.3 43 163-207 85-128 (135)
469 PF06258 Mito_fiss_Elm1: Mitoc 20.2 5.3E+02 0.011 21.7 12.6 185 15-222 56-257 (311)
470 PRK11070 ssDNA exonuclease Rec 20.2 7.1E+02 0.015 23.2 12.6 85 121-208 68-163 (575)
471 PRK14142 heat shock protein Gr 20.1 3.7E+02 0.008 21.4 5.6 48 227-275 49-96 (223)
No 1
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.7e-38 Score=272.93 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=202.6
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
+...++.+|.++++|+...+.+.+ +|.+.+++.++|||+|.+.+.+.... ...+.+.|++
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~-----~g~~~~ki~vi~nGvd~~~f~~~~~~---------------~~~~~~~il~ 227 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK-----MGCPPEKIAVSRMGVDMTRFSPRPVK---------------APATPLEIIS 227 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH-----cCCCHHHEEEcCCCCCHHHcCCCccc---------------cCCCCeEEEE
Confidence 445567899999999987776443 47778899999999998877543211 1235678999
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 167 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~ 167 (284)
+|++.+.||++.+++++..+.+ +.++++++++|+|+ ..+.+++.++++++.++|.|+|+. +++.++
T Consensus 228 vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G~-----~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~ 295 (406)
T PRK15427 228 VARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIGP-----WERRLRTLIEQYQLEDVVEMPGFKPSHEVKAM 295 (406)
T ss_pred EeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECch-----hHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHH
Confidence 9999999999999999998765 33789999999986 678899999999999999999986 689999
Q ss_pred HhhccEEEEcCCC----CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHH
Q 023290 168 LAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVE 242 (284)
Q Consensus 168 ~~~ad~~~~ps~~----~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~ 242 (284)
|+.||++++||.. ..||+|++++|||+||+|||+|+.++..|++.++.+|++++++| +++++++|.++++ |++
T Consensus 296 l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 296 LDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEND--AQALAQRLAAFSQLDTD 373 (406)
T ss_pred HHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCC--HHHHHHHHHHHHhCCHH
Confidence 9999999999972 13999999999999999999999999999999999999999998 9999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 243 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
.+++|++++++.+.++|+|+.+++++.++|++
T Consensus 374 ~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 374 ELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999875
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.8e-37 Score=265.49 Aligned_cols=240 Identities=21% Similarity=0.302 Sum_probs=206.5
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 94 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~ 94 (284)
+.++.++++|....+++.+ .++.+..++.+|+||+|.+.+.+.... +...++.....++.++++++|++.
T Consensus 135 ~~~~~~i~vs~~~~~~~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~ 204 (374)
T TIGR03088 135 PLIHHYVAVSRDLEDWLRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQ 204 (374)
T ss_pred hcCCeEEEeCHHHHHHHHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCC
Confidence 4678899999988887544 467778899999999998877543221 122233334456788999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEE
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 174 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~ 174 (284)
+.||++.+++++..+.+..++ ..++++|+++|.|+ ..+.+++.++++++.+++.|.|..+++..+|+.||++
T Consensus 205 ~~Kg~~~li~a~~~l~~~~~~---~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~ 276 (374)
T TIGR03088 205 AVKDQPTLVRAFALLVRQLPE---GAERLRLVIVGDGP-----ARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLF 276 (374)
T ss_pred cccCHHHHHHHHHHHHHhCcc---cccceEEEEecCCc-----hHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEE
Confidence 999999999999988764321 11479999999876 5678899999999988999999889999999999999
Q ss_pred EEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023290 175 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 175 ~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
++||. .||||++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|..++++++.+..+++++++.
T Consensus 277 v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 277 VLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred Eeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99998 8999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHH
Q 023290 255 VKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
+.++|+|+.+++++.++|++++
T Consensus 353 ~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 353 AEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred HHHhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 3
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=7.7e-37 Score=261.09 Aligned_cols=237 Identities=19% Similarity=0.301 Sum_probs=200.3
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.+..++.+++.|....+++.+. .+..++.+||||+|...+.+.. ...++++++++++..+++++|+
T Consensus 136 ~~~~~~~ii~~S~~~~~~~~~~------~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Gr 201 (380)
T PRK15484 136 LLDKNAKIIVPSQFLKKFYEER------LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGR 201 (380)
T ss_pred HhccCCEEEEcCHHHHHHHHhh------CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEecc
Confidence 4457789999999888876553 4667899999999987665432 2456778888878889999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC----ChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHH
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAP 166 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~ 166 (284)
+.+.||++.+++|+..+.+ ++++++|+++|+++.. ...+.+.+++.+++++ .++.|+|.. +++..
T Consensus 202 l~~~Kg~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~ 272 (380)
T PRK15484 202 ISPDKGILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHN 272 (380)
T ss_pred CccccCHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHH
Confidence 9999999999999998865 3489999999987532 1234556767777665 579999986 68999
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCcee-eecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~-~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
+|+.||++++||. +.|+||++++|||+||+|||+++.+++.|++.++.+|+ ++++.| +++++++|..+++|++. .
T Consensus 273 ~~~~aDv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~ 348 (380)
T PRK15484 273 YYPLADLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-T 348 (380)
T ss_pred HHHhCCEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-H
Confidence 9999999999997 25999999999999999999999999999999999998 567777 99999999999999985 6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
++++++++.+.++|+|+.+++++.++|++..
T Consensus 349 ~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 349 QIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999998764
No 4
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.1e-36 Score=259.68 Aligned_cols=241 Identities=22% Similarity=0.282 Sum_probs=208.5
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|....+.+. +.++.+..++.+||||+|.+.+.+.. +...++++++++++++|+++|+
T Consensus 160 ~~~~~d~vi~~s~~~~~~~~----~~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~ 227 (405)
T TIGR03449 160 LVDNADRLIANTDEEARDLV----RHYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGR 227 (405)
T ss_pred HHHhcCeEEECCHHHHHHHH----HHcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecC
Confidence 46788999999998777643 34677778999999999988775432 2456778888888899999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCC--eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~--~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
+.+.||++.+++++..+.+. .++ ++|+++|++..+.....+.++++++++++.++|.|+|.. +++..+|
T Consensus 228 l~~~K~~~~li~a~~~l~~~-------~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l 300 (405)
T TIGR03449 228 IQPLKAPDVLLRAVAELLDR-------DPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVY 300 (405)
T ss_pred CCcccCHHHHHHHHHHHHhh-------CCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHH
Confidence 99999999999999988653 244 999999964322113567889999999998999999986 7899999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
+.||++++||. .|+||++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++++++.+.+++
T Consensus 301 ~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~ 376 (405)
T TIGR03449 301 RAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMG 376 (405)
T ss_pred HhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999998 8999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+++++.+ ++|+|+.+++++.++|.+++.
T Consensus 377 ~~~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 377 AAAVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 9999877 569999999999999998874
No 5
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=4.4e-36 Score=257.42 Aligned_cols=229 Identities=19% Similarity=0.257 Sum_probs=192.0
Q ss_pred ccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHH--HhCCCCCCeEEEEeccccccc
Q 023290 20 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--SLGVRNEDLLFAIINSVSRGK 97 (284)
Q Consensus 20 ~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~i~~~g~~~~~k 97 (284)
+++.|..+++. +.+.++.+++++++||||+|+..+.+..... ...+. ..+++++.++++++|++.+.|
T Consensus 342 ~v~~s~~v~~~----l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~------~~~r~~~~~~l~~~~~vIg~VgRl~~~K 411 (578)
T PRK15490 342 FMSNNHCVTRH----YADWLKLEAKHFQVVYNGVLPPSTEPSSEVP------HKIWQQFTQKTQDADTTIGGVFRFVGDK 411 (578)
T ss_pred hhhccHHHHHH----HHHHhCCCHHHEEEEeCCcchhhcCccchhh------HHHHHHhhhccCCCCcEEEEEEEEehhc
Confidence 56666666665 4445788999999999999998766543211 11222 233455667889999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEc
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 177 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~p 177 (284)
|+..+++++.++.+ ..++++|+|+|+|+ ..+.++++++++++.++|.|+|+.+++..+|+.+|++++|
T Consensus 412 g~~~LI~A~a~llk-------~~pdirLvIVGdG~-----~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlP 479 (578)
T PRK15490 412 NPFAWIDFAARYLQ-------HHPATRFVLVGDGD-----LRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILF 479 (578)
T ss_pred CHHHHHHHHHHHHh-------HCCCeEEEEEeCch-----hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEc
Confidence 99999999988765 23899999999986 6788999999999999999999999999999999999999
Q ss_pred CCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHH---HHHhhCHHHHHHHHHHHHHH
Q 023290 178 SQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI---VKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 178 s~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i---~~l~~~~~~~~~~~~~~~~~ 254 (284)
|. +||||++++|||++|+|||+++.++..|++.++.+|++++++| ++++++++ ..+....+.+..+++++++.
T Consensus 480 S~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D--~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~ 555 (578)
T PRK15490 480 SR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQ--TVNLDQACRYAEKLVNLWRSRTGICQQTQSF 555 (578)
T ss_pred cc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999999999999999999999999999988 88887776 44555555666789999999
Q ss_pred HHHhcCHHHHHHHHHHHHHH
Q 023290 255 VKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~ 274 (284)
+.++|||+.+++++.++|.+
T Consensus 556 V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 556 LQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 6
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.3e-36 Score=262.81 Aligned_cols=230 Identities=23% Similarity=0.267 Sum_probs=201.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|....+.. ..+|.+.+++.+||||+|.+.+.+.... ...++.++|+++|
T Consensus 240 ~~~~~ad~Ii~~s~~~~~~~-----~~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vG 300 (475)
T cd03813 240 LAYQAADRITTLYEGNRERQ-----IEDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIG 300 (475)
T ss_pred HHHHhCCEEEecCHHHHHHH-----HHcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEe
Confidence 34578999999999877643 3367888899999999998876543210 1234678899999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
++.+.||++.+++|+..+.+. .++++++|+|.++ ..+.+.++++++++++++.++|.|+| ..++.++|+.+
T Consensus 301 rl~~~Kg~~~li~a~~~l~~~-------~p~~~l~IvG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~a 371 (475)
T cd03813 301 RVVPIKDIKTFIRAAAIVRKK-------IPDAEGWVIGPTD-EDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKL 371 (475)
T ss_pred ccccccCHHHHHHHHHHHHHh-------CCCeEEEEECCCC-cChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhC
Confidence 999999999999999988763 3899999999874 33457889999999999999999999 67999999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec------CCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~------~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
|++++||. .||+|++++|||+||+|||+|+.++..+++.+ |.+|++++++| +++++++|.++++|++.++
T Consensus 372 Dv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~ 447 (475)
T cd03813 372 DVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRR 447 (475)
T ss_pred CEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHH
Confidence 99999999 89999999999999999999999999999988 56899999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++++++.+.+.|+|+.+++++.++|+
T Consensus 448 ~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 448 AMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999884
No 7
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=4.4e-35 Score=255.96 Aligned_cols=248 Identities=19% Similarity=0.220 Sum_probs=202.8
Q ss_pred cccCCcccccccchhhHHHHHHH-----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHH
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVR 75 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r 75 (284)
..+..+|.++++|...++.+... +...++....++.+|+||+|.+.|.+..+.. .+...+..++
T Consensus 205 ~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~ 284 (485)
T PRK14099 205 AGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQ 284 (485)
T ss_pred HHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHH
Confidence 34678999999999998876531 1112234567999999999999887654321 1223356788
Q ss_pred HHhCCCC--CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC
Q 023290 76 ESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 153 (284)
Q Consensus 76 ~~~~~~~--~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~ 153 (284)
+++|++. +.++++++||+.++||++.+++|+..+.+ .+++|+++|.|.. ++.+.+++++++++ +
T Consensus 285 ~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~ 350 (485)
T PRK14099 285 ARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--G 350 (485)
T ss_pred HHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--C
Confidence 9999974 46788999999999999999999988764 6789999998752 25677888887764 3
Q ss_pred cE-EEeccccCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC---------CceeeecC
Q 023290 154 RV-HFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPV 222 (284)
Q Consensus 154 ~v-~~~~~~~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~---------~~g~~~~~ 222 (284)
++ .++|+.+++..+| +.||++++||. +|+||++++|||+||+|+|+++.||..+.+.++ .+|+++++
T Consensus 351 ~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~ 428 (485)
T PRK14099 351 QIGVVIGYDEALAHLIQAGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP 428 (485)
T ss_pred CEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC
Confidence 55 7889888888887 47999999999 999999999999999988989999999998775 68999999
Q ss_pred CCCChHHHHHHHHH---HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 223 GKEGITPLAKNIVK---LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 223 ~d~~~~~~~~~i~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
.| +++++++|.+ +++|++.++++++++++ ++|||+.+++++.++|++++++.+
T Consensus 429 ~d--~~~La~ai~~a~~l~~d~~~~~~l~~~~~~---~~fSw~~~a~~y~~lY~~l~~~~~ 484 (485)
T PRK14099 429 VT--ADALAAALRKTAALFADPVAWRRLQRNGMT---TDVSWRNPAQHYAALYRSLVAERR 484 (485)
T ss_pred CC--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhh---hcCChHHHHHHHHHHHHHHHhhhC
Confidence 98 9999999997 67799999999998863 679999999999999999987654
No 8
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.9e-35 Score=264.26 Aligned_cols=230 Identities=17% Similarity=0.208 Sum_probs=191.9
Q ss_pred cccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHH--hCCCCCCeEEEEecccccc
Q 023290 19 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES--LGVRNEDLLFAIINSVSRG 96 (284)
Q Consensus 19 ~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~i~~~g~~~~~ 96 (284)
.++++|....+. +.+.++++.+++.|||||+|...+.+.+.. ...+.. ...+++.++|+++||+.+.
T Consensus 461 i~Vs~S~~~~~~----l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~-------~~~~~~~~~~~~~~~~vIg~VGRL~~~ 529 (694)
T PRK15179 461 ALSSNSQFAAHR----YADWLGVDERRIPVVYNGLAPLKSVQDDAC-------TAMMAQFDARTSDARFTVGTVMRVDDN 529 (694)
T ss_pred EEEeCcHHHHHH----HHHHcCCChhHEEEECCCcCHHhcCCCchh-------hHHHHhhccccCCCCeEEEEEEeCCcc
Confidence 344445544444 444578888899999999998766532211 111111 2234557889999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEE
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 176 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ 176 (284)
||++.+++|+..+.+ +.++++|+|+|+|+ ..+.++++++++++.++|.|+|+.+++..+|+.||++++
T Consensus 530 KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G~-----~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~Vl 597 (694)
T PRK15179 530 KRPFLWVEAAQRFAA-------SHPKVRFIMVGGGP-----LLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLL 597 (694)
T ss_pred CCHHHHHHHHHHHHH-------HCcCeEEEEEccCc-----chHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEe
Confidence 999999999998866 33899999999986 678899999999999999999999999999999999999
Q ss_pred cCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 023290 177 NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 256 (284)
Q Consensus 177 ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 256 (284)
||. +|+||++++|||+||+|||+|+.++..|++.++.+|++++++|.++++++++|.+++.+......+++++++.+.
T Consensus 598 pS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~ 675 (694)
T PRK15179 598 LSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS 675 (694)
T ss_pred ccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH
Confidence 998 999999999999999999999999999999999999999988744578999999988876666678889999998
Q ss_pred HhcCHHHHHHHHHHHHH
Q 023290 257 EIFQEHHMAERIAVVLK 273 (284)
Q Consensus 257 ~~~~~~~~~~~~~~~~~ 273 (284)
++|||+.+++++.++|+
T Consensus 676 ~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 676 ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HhCCHHHHHHHHHHHhC
Confidence 89999999999999984
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=6.6e-35 Score=249.25 Aligned_cols=235 Identities=20% Similarity=0.262 Sum_probs=205.3
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+.+.+. + ....++.++|||++...+..... ...+++++++++.++++++
T Consensus 137 ~~~~~~~d~ii~~s~~~~~~~~~~----~-~~~~~i~vi~n~~~~~~~~~~~~--------~~~~~~~~~~~~~~~il~~ 203 (371)
T cd04962 137 RFSIEKSDGVTAVSESLRQETYEL----F-DITKEIEVIPNFVDEDRFRPKPD--------EALKRRLGAPEGEKVLIHI 203 (371)
T ss_pred HHHHhhCCEEEEcCHHHHHHHHHh----c-CCcCCEEEecCCcCHhhcCCCch--------HHHHHhcCCCCCCeEEEEe
Confidence 345578999999999887775442 3 34568999999999876544321 3456778888888999999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
|++.+.||++.+++++..+.+. .+++++++|.++ ..+.+++.++++++.++|.|+|..+++..+|+.
T Consensus 204 g~l~~~K~~~~li~a~~~l~~~--------~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 270 (371)
T cd04962 204 SNFRPVKRIDDVIRIFAKVRKE--------VPARLLLVGDGP-----ERSPAERLARELGLQDDVLFLGKQDHVEELLSI 270 (371)
T ss_pred cccccccCHHHHHHHHHHHHhc--------CCceEEEEcCCc-----CHHHHHHHHHHcCCCceEEEecCcccHHHHHHh
Confidence 9999999999999999887541 568999999885 457788888999988899999999999999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|..++++++.+.+|+++
T Consensus 271 ~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~ 346 (371)
T cd04962 271 ADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRA 346 (371)
T ss_pred cCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999998 9999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
+++.+.++|+|+.+++++.++|+++
T Consensus 347 ~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 347 ARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999888999999999999999763
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.5e-35 Score=255.45 Aligned_cols=247 Identities=15% Similarity=0.195 Sum_probs=191.1
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|.... .+.+....+.+.+++.+||||+|.+.|.+......... ....+++++..++.++|+++||
T Consensus 181 ~~~~ad~ii~~s~~~~---~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vGr 256 (439)
T TIGR02472 181 TLAHASLVITSTHQEI---EEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSE-IDNLLAPFLKDPEKPPILAISR 256 (439)
T ss_pred HHHhCCEEEECCHHHH---HHHHHhccCCCccceEEECCCcChhhcCCCCccccchh-HHHHHHhhccccCCcEEEEEcC
Confidence 3567888888875322 22122223577889999999999987765432111111 1122344555667788999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC------hHHHHHHHHHHHHcCCCCcEEEeccc--cCH
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNKT--LTV 164 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~------~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~ 164 (284)
+.+.||++.+++|+..+.. +.. .+++. +++|+++... ..+.+.+..+++++++.++|.|+|+. +++
T Consensus 257 l~~~Kg~~~li~A~~~l~~-~~~----~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~ 330 (439)
T TIGR02472 257 PDRRKNIPSLVEAYGRSPK-LQE----MANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDV 330 (439)
T ss_pred CcccCCHHHHHHHHHhChh-hhh----hccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHH
Confidence 9999999999999986432 111 13332 3557654221 01234566778889999999999974 789
Q ss_pred HHHHhhc----cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 165 APYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 165 ~~~~~~a----d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+.| |++++||. .|+||++++|||+||+|||+|+.++..|++.++.+|++++++| +++++++|.++++|
T Consensus 331 ~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i~~ll~~ 406 (439)
T TIGR02472 331 PELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLD--LEAIASALEDALSD 406 (439)
T ss_pred HHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHhC
Confidence 9999977 99999999 8999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 241 VERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++.++++++++++.+.++|||+.+++++.++++
T Consensus 407 ~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 407 SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999998863
No 11
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-34 Score=260.68 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=207.6
Q ss_pred ccCCcccccccchhhHHHHHHH----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRES 77 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r~~ 77 (284)
.+.++|.++++|...++.+... +...++....++.+|+||+|.+.|.+..+.. .+...+..++++
T Consensus 690 GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRke 769 (977)
T PLN02939 690 AIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQ 769 (977)
T ss_pred HHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHH
Confidence 3457899999999988876542 2233456778999999999999887654321 123335778999
Q ss_pred hCCCC---CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCc
Q 023290 78 LGVRN---EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 154 (284)
Q Consensus 78 ~~~~~---~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (284)
+|+++ +.++|+++||+.+.||++.+++|+..+.. ++++|+|+|.|+.. .+...++.++.+++..++
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~dr 838 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNN 838 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCe
Confidence 99974 46899999999999999999999988754 67899999988522 256788889999998889
Q ss_pred EEEeccccC--HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec---------CCceeeecCC
Q 023290 155 VHFVNKTLT--VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---------GTTGLLHPVG 223 (284)
Q Consensus 155 v~~~~~~~~--~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~---------~~~g~~~~~~ 223 (284)
|.|++..++ ...+|+.||++++||+ +|+||++++|||+||+|+|++++||..++|.+ +.+|+++++.
T Consensus 839 V~FlG~~de~lah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~ 916 (977)
T PLN02939 839 IRLILKYDEALSHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP 916 (977)
T ss_pred EEEEeccCHHHHHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC
Confidence 999998744 3579999999999999 99999999999999999999999999998865 5789999998
Q ss_pred CCChHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 224 KEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
| +++++++|.+++. +++.+++|+.+++ .+.|||+.+++++.++|++++....
T Consensus 917 D--~eaLa~AL~rAL~~~~~dpe~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 917 D--EQGLNSALERAFNYYKRKPEVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred C--HHHHHHHHHHHHHHhccCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 8 9999999998765 7899999987664 3679999999999999999987643
No 12
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=5.4e-35 Score=253.05 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=204.2
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|....+.+++ ++.+..++.+||||+|.+.+.+..... ...++++++++++.++++|+|
T Consensus 167 ~~~~~ad~ii~~S~~~~~~~~~-----~~~~~~~i~vi~ngvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~G 236 (412)
T PRK10307 167 SLLRRFDNVSTISRSMMNKARE-----KGVAAEKVIFFPNWSEVARFQPVADAD-----VDALRAQLGLPDGKKIVLYSG 236 (412)
T ss_pred HHHhhCCEEEecCHHHHHHHHH-----cCCCcccEEEECCCcCHhhcCCCCccc-----hHHHHHHcCCCCCCEEEEEcC
Confidence 3466799999999999887544 467778999999999988765432210 245788899988889999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++|+..+.+ .++++|+|+|+|+ ..+.++++++++++. +|.|+|+. +++..+|+
T Consensus 237 ~l~~~kg~~~li~a~~~l~~--------~~~~~l~ivG~g~-----~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~ 302 (412)
T PRK10307 237 NIGEKQGLELVIDAARRLRD--------RPDLIFVICGQGG-----GKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLK 302 (412)
T ss_pred ccccccCHHHHHHHHHHhcc--------CCCeEEEEECCCh-----hHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHH
Confidence 99999999999999987632 2789999999986 568888999998886 79999985 68999999
Q ss_pred hccEEEEcCCCCcCc----cchhHHHHHhcCCCEEEcCCCC--cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 023290 170 AIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLGTAAGG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 243 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~----~~~~~~Eama~G~Pvi~~~~~~--~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~ 243 (284)
.||++++||. .|+ +|.+++|||+||+|||+++.++ ..+++. .+|++++++| +++++++|.++++|++.
T Consensus 303 ~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d--~~~la~~i~~l~~~~~~ 376 (412)
T PRK10307 303 MADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPES--VEALVAAIAALARQALL 376 (412)
T ss_pred hcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCC--HHHHHHHHHHHHhCHHH
Confidence 9999999998 676 5778999999999999999876 457775 5899999998 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 244 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
+.+|++++++.+.++|||+.+++++.++|++++.+
T Consensus 377 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 377 RPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998864
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1e-34 Score=254.16 Aligned_cols=244 Identities=17% Similarity=0.198 Sum_probs=199.2
Q ss_pred ccCCcccccccchhhHHHHHHH-----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRE 76 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r~ 76 (284)
.+..+|.++++|...++.+... +...++.+..++.+|+||+|.+.+.+..+.. .+...+..+++
T Consensus 194 ~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 273 (466)
T PRK00654 194 GLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQE 273 (466)
T ss_pred HHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHH
Confidence 3678999999999888775431 1122345677999999999999887643210 12233567899
Q ss_pred HhCCCC-CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE
Q 023290 77 SLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 155 (284)
Q Consensus 77 ~~~~~~-~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 155 (284)
++|+++ +.++|+++||+.++||++.+++|+.++.+ .+++|+|+|++.. .+.+.+++++++++. ++
T Consensus 274 ~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~~~lvivG~g~~---~~~~~l~~l~~~~~~--~v 339 (466)
T PRK00654 274 RFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QGGQLVLLGTGDP---ELEEAFRALAARYPG--KV 339 (466)
T ss_pred HhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cCCEEEEEecCcH---HHHHHHHHHHHHCCC--cE
Confidence 999975 67899999999999999999999998865 5799999998742 256788888888763 55
Q ss_pred E-EeccccC-HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC------CceeeecCCCCCh
Q 023290 156 H-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEGI 227 (284)
Q Consensus 156 ~-~~~~~~~-~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~------~~g~~~~~~d~~~ 227 (284)
. +.+..++ +..+|+.||++++||. +|+||++++|||+||+|+|+++.+|..+++.++ .+|++++++| +
T Consensus 340 ~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~ 415 (466)
T PRK00654 340 GVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFN--A 415 (466)
T ss_pred EEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCC--H
Confidence 5 4566544 5689999999999999 999999999999999999999999999999888 8999999998 9
Q ss_pred HHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 228 TPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 228 ~~~~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
++++++|.++++ +++.+.+++.++++ +.|||+.+++++.++|+++++
T Consensus 416 ~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 416 EDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHHhh
Confidence 999999999876 77778888877753 689999999999999999875
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.3e-34 Score=248.85 Aligned_cols=238 Identities=23% Similarity=0.280 Sum_probs=201.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHh-cccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
..++.+|.++++|....+.+.+ .+ +....++.++|||+|.+.+.+.. +...+.+++++++.++++++
T Consensus 140 ~~~~~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~ 207 (388)
T TIGR02149 140 TAIEAADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFV 207 (388)
T ss_pred HHHhhCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEE
Confidence 3456789999999988887544 34 56677899999999988776432 35577888998888899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC-CCcEEEec-cc--cCHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVN-KT--LTVAP 166 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~-~~--~~~~~ 166 (284)
|++.+.||++.+++++.++. ++++++++|+++. ..+..+.+++.++.++. .+++.+++ .. +++..
T Consensus 208 Grl~~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 276 (388)
T TIGR02149 208 GRITRQKGVPHLLDAVHYIP----------KDVQVVLCAGAPD-TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVE 276 (388)
T ss_pred cccccccCHHHHHHHHHHHh----------hcCcEEEEeCCCC-cHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHH
Confidence 99999999999999998763 5678888887643 23356677777777665 23577664 33 78999
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCCh------HHHHHHHHHHhhC
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKLATH 240 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~------~~~~~~i~~l~~~ 240 (284)
+|+.||++++||. .|++|++++|||++|+|||+++.++..|++.++.+|++++++| + ++++++|.+++.|
T Consensus 277 ~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 277 LLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLAD 352 (388)
T ss_pred HHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhC
Confidence 9999999999998 8999999999999999999999999999999999999999987 7 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 241 VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
++.++++++++++.+.++|+|+.+++++.++|++++
T Consensus 353 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 353 PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999998763
No 15
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2.6e-34 Score=251.90 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=195.0
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC-CCCCCeEEEEec
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIIN 91 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~~g 91 (284)
..+.+|.++++|....+.+.+. ...+.+++.++|||+|.+.+.+.... ...+.++. ..++.++|+++|
T Consensus 202 ~~~~ad~ii~~S~~~~~~l~~~----~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vG 270 (465)
T PLN02871 202 LHRAADLTLVTSPALGKELEAA----GVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVG 270 (465)
T ss_pred HHhhCCEEEECCHHHHHHHHHc----CCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeC
Confidence 3467899999999888875542 22446789999999999877653321 33444443 234678899999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+ ++++|+|+|+|+ +.+.++++++. .+|.|+|++ +++..+|+
T Consensus 271 rl~~~K~~~~li~a~~~~-----------~~~~l~ivG~G~-----~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 271 RLGAEKNLDFLKRVMERL-----------PGARLAFVGDGP-----YREELEKMFAG----TPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CCchhhhHHHHHHHHHhC-----------CCcEEEEEeCCh-----HHHHHHHHhcc----CCeEEeccCCHHHHHHHHH
Confidence 999999999999988764 789999999876 66777777664 379999997 78999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec---CCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 246 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~---~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~ 246 (284)
.||++++||. .|++|++++|||+||+|||+++.++..|++.+ +.+|++++++| +++++++|.++++|++.+++
T Consensus 331 ~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~ 406 (465)
T PLN02871 331 SGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRER 406 (465)
T ss_pred HCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHH
Confidence 9999999998 89999999999999999999999999999998 99999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHh
Q 023290 247 MGKRGYERVKEIFQEHHMAERIAV-VLKEVLKK 278 (284)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (284)
|++++++.+. +|+|+.+++++.+ +|++++..
T Consensus 407 ~~~~a~~~~~-~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 407 MGAAAREEVE-KWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999885 7999999999998 79888764
No 16
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=6.3e-34 Score=248.61 Aligned_cols=228 Identities=18% Similarity=0.300 Sum_probs=190.7
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
.....+|.+++.|....+.+.+.+.+ ++...+++.++|||++.....+.. ..+...|+++|
T Consensus 266 ~~~~~~D~iI~~S~~~~~~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vG 326 (500)
T TIGR02918 266 SNADYIDFFITATDIQNQILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITAS 326 (500)
T ss_pred hchhhCCEEEECCHHHHHHHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEe
Confidence 45667899999999888876664332 334467899999998654432110 12456789999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
|+.+.||++.+++|+..+.+ ..|+++|+|+|.|+ ..+.++++++++++.++|.|+|+. ++.++|+.|
T Consensus 327 rl~~~Kg~~~li~A~~~l~~-------~~p~~~l~i~G~G~-----~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~a 393 (500)
T TIGR02918 327 RLAKEKHIDWLVKAVVKAKK-------SVPELTFDIYGEGG-----EKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDY 393 (500)
T ss_pred ccccccCHHHHHHHHHHHHh-------hCCCeEEEEEECch-----hHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhC
Confidence 99999999999999999876 34899999999986 567899999999999999999976 899999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-CcceeeecCCceeeecCCC--CC----hHHHHHHHHHHhhCHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGK--EG----ITPLAKNIVKLATHVERR 244 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~~~~g~~~~~~d--~~----~~~~~~~i~~l~~~~~~~ 244 (284)
|++++||. .||||++++||||||+|||+++.+ |.++++.++.+|+++++++ .+ +++++++|..+++ ++.+
T Consensus 394 dv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~ 470 (500)
T TIGR02918 394 ELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDI 470 (500)
T ss_pred CEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHH
Confidence 99999998 999999999999999999999986 8999999999999998532 12 7889999999994 5678
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
.+|++++++.+ +.|+|+.+++++.++++++
T Consensus 471 ~~~~~~a~~~a-~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 471 DAFHEYSYQIA-EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhhC
Confidence 99999999976 5699999999999998753
No 17
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=2.5e-34 Score=247.65 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=188.1
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..+|.+|+.|....+.+.+. + ..++.|||||+|.+.+.+.+.. ....+...++.++.++++|+|
T Consensus 152 ~~~~~ad~vi~~s~~~~~~~~~~----~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~~~~~~~~~i~~vg 218 (396)
T cd03818 152 LALAQADAGVSPTRWQRSTFPAE----L---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGRVLTPGDEVITFVA 218 (396)
T ss_pred HHHHhCCEEECCCHHHHhhCcHh----h---ccceEEeCCCccccccCCCchh------hhcccccccCCCCCeEEEEEC
Confidence 34678999999999888875442 2 3689999999999887654321 112223333456778899999
Q ss_pred c-ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCCh----HHHHHHHHHHHHcC---CCCcEEEeccc--
Q 023290 92 S-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT----KFESELRNYVMQKK---IQDRVHFVNKT-- 161 (284)
Q Consensus 92 ~-~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~----~~~~~l~~~~~~~~---~~~~v~~~~~~-- 161 (284)
| +.+.||++.+++|+..+.+ ..++++|+|+|++.+... ......+.+.++++ ..++|.|+|++
T Consensus 219 R~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~ 291 (396)
T cd03818 219 RNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPY 291 (396)
T ss_pred CCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCH
Confidence 7 9999999999999998865 338999999997432100 00011222233332 24689999986
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+++..+|+.||++++||. .|++|++++||||||+|||+++.++..|++.++.+|++++++| +++++++|.++++++
T Consensus 292 ~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d--~~~la~~i~~ll~~~ 367 (396)
T cd03818 292 DQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFD--PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCC--HHHHHHHHHHHHhCH
Confidence 689999999999999998 8999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 242 ERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
+.+.+|++++++.+.++|+|+.+++++.
T Consensus 368 ~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 368 ARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999999999998875
No 18
>PLN02316 synthase/transferase
Probab=100.00 E-value=9.1e-34 Score=258.88 Aligned_cols=247 Identities=17% Similarity=0.177 Sum_probs=202.7
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcc--cCCCeEEEecCCccccchhhhhh------------hHHHHHHHHHHHH
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDN------------VAKRVLREHVRES 77 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--~~~~i~vi~~g~~~~~~~~~~~~------------~~~~~~~~~~r~~ 77 (284)
..+..+|.++++|...++.+.. ...+ ...++++|+||+|.+.|.+..+. ..+...+..++++
T Consensus 757 ~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~ 832 (1036)
T PLN02316 757 KAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQR 832 (1036)
T ss_pred HHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHH
Confidence 3456789999999998776543 2222 24789999999999877654321 0122335678999
Q ss_pred hCCCC-CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC--CCc
Q 023290 78 LGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDR 154 (284)
Q Consensus 78 ~~~~~-~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~--~~~ 154 (284)
+|++. +.++|+++||+.+.||++.+++|+..+.+ .+++|+|+|+|+. ..+...++++++++++ +++
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~l~~La~~Lg~~~~~r 901 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQNDFVNLANQLHSSHHDR 901 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHHHHHHHHHhCccCCCe
Confidence 99984 67899999999999999999999998765 6799999998753 2356788899998865 578
Q ss_pred EEEeccccCH--HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC-------------Cceee
Q 023290 155 VHFVNKTLTV--APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------------TTGLL 219 (284)
Q Consensus 155 v~~~~~~~~~--~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~-------------~~g~~ 219 (284)
|.|.+..++. ..+|+.||++++||+ +|+||++.+|||+||+|+|+++.||+.+.|.++ .+|++
T Consensus 902 V~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGfl 979 (1036)
T PLN02316 902 ARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFS 979 (1036)
T ss_pred EEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEE
Confidence 9988766443 369999999999999 999999999999999999999999999999874 68999
Q ss_pred ecCCCCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 220 HPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 220 ~~~~d~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+++.| +++++.+|.+++++ ++.+..+++.+++.+.+.|||+.+++++.++|+.+++
T Consensus 980 f~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 980 FDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred eCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhC
Confidence 99998 99999999999986 4556667888888888899999999999999998763
No 19
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=5.1e-34 Score=259.86 Aligned_cols=255 Identities=15% Similarity=0.163 Sum_probs=201.5
Q ss_pred ccCCcccccccchhhHHHHHHHH-----------HH-------HhcccCCCeEEEecCCccccchhhhhhhHH-------
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRT-----------RE-------RLRIKMPDTYVVHLGNSKELMEVAEDNVAK------- 67 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~-----------~~-------~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~------- 67 (284)
.+..++.||+.|....+.....+ .. -+|...+++.|||||+|.+.|.+.......
T Consensus 378 ~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~ 457 (1050)
T TIGR02468 378 SLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEE 457 (1050)
T ss_pred HHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccccc
Confidence 46789999999988776432211 00 022335699999999999988764321110
Q ss_pred ------HHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC------C
Q 023290 68 ------RVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------Q 135 (284)
Q Consensus 68 ------~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~------~ 135 (284)
......++ .+...++.++|+++||+.+.||++.+++|+..+.... ..++++ +|+|.++.. .
T Consensus 458 ~~~~~~~~~~~~l~-r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~ 530 (1050)
T TIGR02468 458 HPAKPDPPIWSEIM-RFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGS 530 (1050)
T ss_pred ccccccchhhHHHH-hhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccc
Confidence 00012233 3344667788999999999999999999999885421 114665 456764321 1
Q ss_pred hHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhc----cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce
Q 023290 136 TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 209 (284)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~a----d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e 209 (284)
..+...+..+++++++.++|.|+|+. +++..+|+.| |++++||. +|+||++++||||||+|||+|+.++..+
T Consensus 531 ~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~E 608 (1050)
T TIGR02468 531 SSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVD 608 (1050)
T ss_pred hHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHH
Confidence 12456788899999999999999974 7899999988 69999999 9999999999999999999999999999
Q ss_pred eeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 210 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 210 ~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
++.++.+|+++++.| +++++++|.++++|++.++++++++++.+. +|+|+.+++++.+.+..+...+
T Consensus 609 II~~g~nGlLVdP~D--~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 609 IHRVLDNGLLVDPHD--QQAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HhccCCcEEEECCCC--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999998 999999999999999999999999999886 6999999999999999887655
No 20
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.1e-33 Score=247.51 Aligned_cols=244 Identities=18% Similarity=0.185 Sum_probs=198.6
Q ss_pred ccCCcccccccchhhHHHHHHH------HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR------TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVR 75 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~------~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r 75 (284)
.+..+|.++++|...++.+... +...+.....++.+|+||+|.+.+.+..+.. .+...+..++
T Consensus 217 ~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~ 296 (489)
T PRK14098 217 GVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALL 296 (489)
T ss_pred HHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHH
Confidence 4578999999999988875431 1111112367899999999999887654321 1233467788
Q ss_pred HHhCCCC--CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC
Q 023290 76 ESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 153 (284)
Q Consensus 76 ~~~~~~~--~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~ 153 (284)
+++|++. +.++|+++||+.+.||++.+++|+..+.+ .+++|+|+|+|+. .+.+.+++++++++ +
T Consensus 297 ~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~ 362 (489)
T PRK14098 297 EEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEHP--E 362 (489)
T ss_pred HHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHCC--C
Confidence 8999863 56899999999999999999999998865 6899999998752 25678888888764 6
Q ss_pred cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec----CCceeeecCCCCCh
Q 023290 154 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN----GTTGLLHPVGKEGI 227 (284)
Q Consensus 154 ~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~----~~~g~~~~~~d~~~ 227 (284)
+|.+++.. +++..+|+.||++++||. .|+||++.+|||+||+|+|+++.||..+.+.+ +.+|+++++.| +
T Consensus 363 ~V~~~g~~~~~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d--~ 438 (489)
T PRK14098 363 QVSVQTEFTDAFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYT--P 438 (489)
T ss_pred CEEEEEecCHHHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCC--H
Confidence 89999876 456899999999999999 99999999999999999999999999998864 67999999998 9
Q ss_pred HHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 228 TPLAKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 228 ~~~~~~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
++++++|.+++ ++++.+.+++.++. .+.|||+.+++++.++|+++++
T Consensus 439 ~~la~ai~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 439 EALVAKLGEALALYHDEERWEELVLEAM---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHhc
Confidence 99999999865 58888888776653 4689999999999999999874
No 21
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=8.1e-34 Score=244.52 Aligned_cols=230 Identities=20% Similarity=0.209 Sum_probs=195.3
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|....+.+.. ..+.+.+++.+||||+|.+.+.+.... ..++.++++++|+
T Consensus 141 ~~~~~d~ii~~s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~gr 201 (398)
T cd03796 141 SLADVDHVICVSHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISR 201 (398)
T ss_pred hhccCCEEEEecHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEec
Confidence 357899999999988775322 245677889999999998766543211 1346789999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 170 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 170 (284)
+.+.||++.+++++..+.+ ..++++|+++|.++ ..+.++++++++++.++|.|+|.. +++..+|+.
T Consensus 202 l~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ 269 (398)
T cd03796 202 LVYRKGIDLLVGIIPEICK-------KHPNVRFIIGGDGP-----KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQ 269 (398)
T ss_pred cchhcCHHHHHHHHHHHHh-------hCCCEEEEEEeCCc-----hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHh
Confidence 9999999999999988765 33899999999875 567889999999999999999986 789999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
||++++||. .|+||++++|||+||+|||+++.++..|++.++. ++++++ | +++++++|.+++++......+..+
T Consensus 270 ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~-~~~~~~-~--~~~l~~~l~~~l~~~~~~~~~~~~ 343 (398)
T cd03796 270 GHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDM-ILLAEP-D--VESIVRKLEEAISILRTGKHDPWS 343 (398)
T ss_pred CCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCCc-eeecCC-C--HHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999998 8999999999999999999999999999997753 444443 5 899999999999987766678888
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 251 GYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
+++.+.++|||+.+++++.++|+++++..
T Consensus 344 ~~~~~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 344 FHNRVKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998653
No 22
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.1e-33 Score=248.62 Aligned_cols=242 Identities=20% Similarity=0.206 Sum_probs=197.7
Q ss_pred ccCCcccccccchhhHHHHHHH-----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRE 76 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r~ 76 (284)
.+..+|.++++|...++.+... +...+.....++.+|+||+|.+.+.+..+.. .+...+..+++
T Consensus 202 ~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~ 281 (473)
T TIGR02095 202 GIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQE 281 (473)
T ss_pred HHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHH
Confidence 4678999999999887765431 1111123467899999999999887543211 12233577899
Q ss_pred HhCCCC--CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCc
Q 023290 77 SLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 154 (284)
Q Consensus 77 ~~~~~~--~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (284)
++|++. +.++|+++||+.+.||++.+++|+.++.+ .+++|+|+|.+.+ .+.+.+++++.+++ .+
T Consensus 282 ~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~lvi~G~g~~---~~~~~l~~~~~~~~--~~ 347 (473)
T TIGR02095 282 ELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE---------LGGQLVVLGTGDP---ELEEALRELAERYP--GN 347 (473)
T ss_pred HcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH---------cCcEEEEECCCCH---HHHHHHHHHHHHCC--Cc
Confidence 999976 67899999999999999999999998865 5699999998752 35677888887654 46
Q ss_pred EEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC------CceeeecCCCCC
Q 023290 155 VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEG 226 (284)
Q Consensus 155 v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~------~~g~~~~~~d~~ 226 (284)
+.+.+.. +++..+|+.||++++||. +|+||++++|||+||+|+|+++.++..+++.++ .+|+++++.|
T Consensus 348 v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d-- 423 (473)
T TIGR02095 348 VRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYD-- 423 (473)
T ss_pred EEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCC--
Confidence 7776554 456789999999999999 999999999999999999999999999999988 8999999998
Q ss_pred hHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 227 ~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
+++++++|.+++. +++.++++++++++ +.|||+.+++++.++|+++
T Consensus 424 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 424 PGALLAALSRALRLYRQDPSLWEALQKNAMS---QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhC
Confidence 9999999999888 89989999888753 6899999999999999863
No 23
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=5.7e-34 Score=243.13 Aligned_cols=223 Identities=24% Similarity=0.304 Sum_probs=194.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.++++|+...+.+.+ .+.+.+++.+++||+|.+.+.+... ..+..+++++|
T Consensus 138 ~~~~~~d~ii~~s~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G 195 (367)
T cd05844 138 RLARRAALFIAVSQFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVG 195 (367)
T ss_pred HHHHhcCEEEECCHHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEE
Confidence 4457889999999988887554 3677788999999999876653221 23567889999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+.+ +.++++|+++|.++ ..+.++..++++++.++|.|+|.+ +++..+|+
T Consensus 196 ~~~~~K~~~~li~a~~~l~~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~ 263 (367)
T cd05844 196 RFVEKKGPLLLLEAFARLAR-------RVPEVRLVIIGDGP-----LLAALEALARALGLGGRVTFLGAQPHAEVRELMR 263 (367)
T ss_pred eeccccChHHHHHHHHHHHH-------hCCCeEEEEEeCch-----HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 99999999999999998865 23799999999875 667889999998888999999987 67999999
Q ss_pred hccEEEEcCCC----CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 170 AIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 170 ~ad~~~~ps~~----~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
.||++++||.. ..||+|++++|||+||+|||+++.++..+++.++.+|+++++.| +++++++|.+++++++.+.
T Consensus 264 ~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 264 RARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRA 341 (367)
T ss_pred hCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHH
Confidence 99999999862 14899999999999999999999999999999999999999888 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (284)
+++.++++.+.++|+|+.+++++.+
T Consensus 342 ~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 342 RMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999999999999875
No 24
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=2e-33 Score=238.56 Aligned_cols=234 Identities=24% Similarity=0.331 Sum_probs=198.7
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..+|.+++.|....+.+. +.++.+..++.++|||+|.+.+........ ....++++++.+++.++++++|
T Consensus 120 ~~~~~~~~vi~~s~~~~~~~~----~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G 192 (355)
T cd03819 120 AIMARGDRVIAVSNFIADHIR----ENYGVDPDRIRVIPRGVDLDRFDPGAVPPE---RILALAREWPLPKGKPVILLPG 192 (355)
T ss_pred HHHHhcCEEEEeCHHHHHHHH----HhcCCChhhEEEecCCccccccCccccchH---HHHHHHHHcCCCCCceEEEEee
Confidence 345678999999998888755 347788889999999999887754332111 1233678888888889999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
++.+.||++.+++++..+.. ..++++++++|.+.... .+.+.+.+.++++++.++|.++|+.+++..+|+.|
T Consensus 193 r~~~~Kg~~~li~~~~~l~~-------~~~~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~a 264 (355)
T cd03819 193 RLTRWKGQEVFIEALARLKK-------DDPDVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALA 264 (355)
T ss_pred ccccccCHHHHHHHHHHHHh-------cCCCeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhC
Confidence 99999999999999998865 23789999999875432 35566677888888888999999999999999999
Q ss_pred cEEEEcC-CCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHH
Q 023290 172 DVLVQNS-QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGK 249 (284)
Q Consensus 172 d~~~~ps-~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~ 249 (284)
|++++|| . .|++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|..++. +++.+.++++
T Consensus 265 d~~i~ps~~--~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~ 340 (355)
T cd03819 265 DIVVSASTE--PEAFGRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFA 340 (355)
T ss_pred CEEEecCCC--CCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999 5 8999999999999999999999999999999999999999988 9999999975554 8999999999
Q ss_pred HHHHHHHHhcCHHHH
Q 023290 250 RGYERVKEIFQEHHM 264 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (284)
++++.+.++|+|+.+
T Consensus 341 ~a~~~~~~~f~~~~~ 355 (355)
T cd03819 341 KARMCVETLFSYDRM 355 (355)
T ss_pred HHHHHHHHhhhhccC
Confidence 999999999999863
No 25
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=4.8e-33 Score=248.83 Aligned_cols=250 Identities=17% Similarity=0.204 Sum_probs=193.0
Q ss_pred cccCCcccccccchhhHHHHHHHHH-----------HHh----cc--cCCCeEEEecCCccccchhhhhhhHHH-H----
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL----RI--KMPDTYVVHLGNSKELMEVAEDNVAKR-V---- 69 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~-----------~~~----~~--~~~~i~vi~~g~~~~~~~~~~~~~~~~-~---- 69 (284)
..+..+|.+|+.|.....-.++.+. ..+ |+ +.+|+.|||+|+|...|.+........ .
T Consensus 448 ~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ 527 (784)
T TIGR02470 448 IAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPE 527 (784)
T ss_pred HHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcc
Confidence 3455688899988643221111110 111 22 557999999999998665533221110 0
Q ss_pred ------HHHHHHHHhCC--CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC----Ch-
Q 023290 70 ------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QT- 136 (284)
Q Consensus 70 ------~~~~~r~~~~~--~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~----~~- 136 (284)
.+...++.+|+ ++++++|+++||+.+.||++.+++|+.++.. + .++++|+|+|++... +.
T Consensus 528 ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~-l------~~~~~LVIVGGg~~~~~s~d~e 600 (784)
T TIGR02470 528 IEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPK-L------RELVNLVVVAGKLDAKESKDRE 600 (784)
T ss_pred hhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHh-h------CCCeEEEEEeCCcccccccchh
Confidence 11234567776 5577889999999999999999999987643 1 157899999986421 11
Q ss_pred --HHHHHHHHHHHHcCCCCcEEEeccc---cCHHHHHh----hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc
Q 023290 137 --KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 207 (284)
Q Consensus 137 --~~~~~l~~~~~~~~~~~~v~~~~~~---~~~~~~~~----~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~ 207 (284)
.....+..+++++++.++|.|+|.. .++.++|+ .+|++++||. +|+||++++|||+||+|||+|+.||.
T Consensus 601 e~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~ 678 (784)
T TIGR02470 601 EQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGP 678 (784)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCH
Confidence 2456788899999999999999964 45556664 3579999998 99999999999999999999999999
Q ss_pred ceeeecCCceeeecCCCCChHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 208 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 208 ~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.|++.++.+|+++++.| +++++++|.+++ .|++.+.++++++++.+.++|+|+.+++++..+.
T Consensus 679 ~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 679 LEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998 999999999876 6999999999999999999999999999998876
No 26
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.4e-33 Score=238.04 Aligned_cols=217 Identities=20% Similarity=0.199 Sum_probs=180.0
Q ss_pred ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCC
Q 023290 41 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 120 (284)
Q Consensus 41 ~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~ 120 (284)
.+..++ ++|||+|+......... ......+++++|++++.++|+++||+.+.||++.+++++..+.+ ..
T Consensus 151 ~~~~~~-vipngvd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~-------~~ 219 (372)
T cd03792 151 VPPRKV-IIPPSIDPLSGKNRELS---PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE-------RV 219 (372)
T ss_pred CCCceE-EeCCCCCCCccccCCCC---HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh-------hC
Confidence 444444 99999997531111100 11135678889998889999999999999999999999998865 23
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 196 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G 196 (284)
++++|+++|+++...+...+.++++.+..++.++|.++|.. +++..+|+.||+++.||. .||||++++|||+||
T Consensus 220 ~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G 297 (372)
T cd03792 220 PDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVTEALWKG 297 (372)
T ss_pred CCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcC
Confidence 78999999998654333444456666667777889998864 688899999999999998 999999999999999
Q ss_pred CCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 197 LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 197 ~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+|||+++.++..+.+.++.+|+++++ .++++.+|.+++.+++.+++|++++++.+.++|+|+.+++++.++|++
T Consensus 298 ~Pvv~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 298 KPVIAGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred CCEEEcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 678899999999999999999999999998899999999999999976
No 27
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=3.8e-33 Score=240.32 Aligned_cols=223 Identities=23% Similarity=0.259 Sum_probs=190.6
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|....+++.+ .++...+++.+++||++...+.... ..++.+.++++|+
T Consensus 180 ~~~~~d~ii~~S~~~~~~l~~----~~~~~~~ki~vi~~gv~~~~~~~~~-----------------~~~~~~~il~~Gr 238 (407)
T cd04946 180 LLSSLDAVFPCSEQGRNYLQK----RYPAYKEKIKVSYLGVSDPGIISKP-----------------SKDDTLRIVSCSY 238 (407)
T ss_pred HHhcCCEEEECCHHHHHHHHH----HCCCccccEEEEECCcccccccCCC-----------------CCCCCEEEEEeec
Confidence 357899999999999988554 4777788999999999876543221 1246788999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 170 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 170 (284)
+.+.||++.+++++..+.+..++ .+++++++|+|+ ..+.+++++++.+..++|.|+|++ +++.++|+.
T Consensus 239 l~~~Kg~~~li~a~~~l~~~~p~-----~~l~~~iiG~g~-----~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~ 308 (407)
T cd04946 239 LVPVKRVDLIIKALAALAKARPS-----IKIKWTHIGGGP-----LEDTLKELAESKPENISVNFTGELSNSEVYKLYKE 308 (407)
T ss_pred cccccCHHHHHHHHHHHHHhCCC-----ceEEEEEEeCch-----HHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh
Confidence 99999999999999998763210 257778899876 667888888888888899999997 578899975
Q ss_pred --ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 171 --IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 171 --ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
+|++++||. .||+|++++|||++|+|||+|+.+|..|++.++.+|+++++.+ ++++++++|.++++|++.+.+|+
T Consensus 309 ~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~-~~~~la~~I~~ll~~~~~~~~m~ 385 (407)
T cd04946 309 NPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDP-TPNELVSSLSKFIDNEEEYQTMR 385 (407)
T ss_pred cCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCC-CHHHHHHHHHHHHhCHHHHHHHH
Confidence 789999998 9999999999999999999999999999999999999998752 29999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHH
Q 023290 249 KRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ 269 (284)
++|++.+.++|+|+...+++.
T Consensus 386 ~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 386 EKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHcCHHHhHHHhc
Confidence 999999999999999998875
No 28
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-32 Score=238.01 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=192.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
.+.+|.++++|..+++.+++. ++. .+++.++++|++...+...+.. ..++..+++++|++
T Consensus 218 ~~~ad~ii~nS~~t~~~l~~~----~~~-~~~i~vvyp~vd~~~~~~~~~~---------------~~~~~~~il~vGR~ 277 (463)
T PLN02949 218 GRCAHLAMVNSSWTKSHIEAL----WRI-PERIKRVYPPCDTSGLQALPLE---------------RSEDPPYIISVAQF 277 (463)
T ss_pred cCCCCEEEECCHHHHHHHHHH----cCC-CCCeEEEcCCCCHHHcccCCcc---------------ccCCCCEEEEEEee
Confidence 478999999999998886542 333 3578999999987644221100 01245678899999
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCC-CChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhh
Q 023290 94 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 170 (284)
Q Consensus 94 ~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 170 (284)
.+.||++.+++|+.++.+.+.+ ..++++|+|+|++.. ++.++.++++++++++++.++|.|+|.. +++..+|+.
T Consensus 278 ~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~ 354 (463)
T PLN02949 278 RPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG 354 (463)
T ss_pred eccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh
Confidence 9999999999999988664432 237899999998743 2234668899999999999999999986 789999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc-eeeec---CCceeeecCCCCChHHHHHHHHHHhh-CHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRL 245 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~-e~v~~---~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~ 245 (284)
||+++.|+. .|+||++++|||++|+|||+++.+|.. +++.+ +.+|++++ | +++++++|.++++ +++.++
T Consensus 355 a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~ 428 (463)
T PLN02949 355 AVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--T--VEEYADAILEVLRMRETERL 428 (463)
T ss_pred CcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--C--HHHHHHHHHHHHhCCHHHHH
Confidence 999999998 999999999999999999999998864 67655 56898874 4 9999999999998 678899
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
+|++++++.+ ++|||+.+.+++.+.++++++.
T Consensus 429 ~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 429 EIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 9999999998 4699999999999999998875
No 29
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1.4e-32 Score=233.16 Aligned_cols=233 Identities=26% Similarity=0.378 Sum_probs=200.7
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
...+.++.++++|....+.+.+ ++.+.+++.+++||++...+...... ....+++++++++.++++++|
T Consensus 132 ~~~~~~~~~i~~s~~~~~~~~~-----~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G 200 (365)
T cd03807 132 LLSSFIPLIVANSAAAAEYHQA-----IGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVA 200 (365)
T ss_pred HhccccCeEEeccHHHHHHHHH-----cCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEec
Confidence 3445678788888888776554 36777899999999998766543322 245667889988899999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHH-HcCCCCcEEEeccccCHHHHHhh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
++.+.||++.+++++..+.+. .++++|+++|.+. ....++.... +.++.++|.++|..+++..+|+.
T Consensus 201 ~~~~~K~~~~li~a~~~l~~~-------~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 268 (365)
T cd03807 201 RLHPQKDHATLLRAAALLLKK-------FPNARLLLVGDGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNA 268 (365)
T ss_pred ccchhcCHHHHHHHHHHHHHh-------CCCeEEEEecCCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHh
Confidence 999999999999999988663 3889999999876 3344555555 77888899999988999999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
||++++||. .|++|++++|||+||+|||+++.++..+++.+ +|++++++| +++++++|.+++++++.+.+++++
T Consensus 269 adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 269 LDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred CCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999 79999999999999999999999999999966 899999888 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++.+.++|+|+.+++++.++|+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 343 ARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999874
No 30
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=3.2e-32 Score=231.52 Aligned_cols=228 Identities=24% Similarity=0.374 Sum_probs=192.0
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG 96 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~ 96 (284)
++.+++.|....++ +.+..+.+.+++.++|||+|...+...... ...+++++++++++++++++|++.+.
T Consensus 131 ~~~~~~~s~~~~~~----~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~ 200 (360)
T cd04951 131 SDLTTNVSKEALDY----FIASKAFNANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEA 200 (360)
T ss_pred cCceEEEcHHHHHH----HHhccCCCcccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchh
Confidence 44555556555554 333345677899999999998766543221 35578888988888999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEE
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 176 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ 176 (284)
||++.+++++.++.+ +.++++|+++|+++ ..+.+++.+++++..++|.++|+.+++..+|+.||++++
T Consensus 201 kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 268 (360)
T cd04951 201 KDYPNLLKAFAKLLS-------DYLDIKLLIAGDGP-----LRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVL 268 (360)
T ss_pred cCcHHHHHHHHHHHh-------hCCCeEEEEEcCCC-----cHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEe
Confidence 999999999998865 33789999999876 567788888888888899999999999999999999999
Q ss_pred cCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Q 023290 177 NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERV 255 (284)
Q Consensus 177 ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~ 255 (284)
||. .|++|++++|||++|+|||+++.++..+++++ +|++++++| +++++++|.++++ +++.+..+..+ ++.+
T Consensus 269 ~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~ 341 (360)
T cd04951 269 SSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERI 341 (360)
T ss_pred ccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHH
Confidence 999 89999999999999999999999999999966 789999888 9999999999995 66666666665 7788
Q ss_pred HHhcCHHHHHHHHHHHHH
Q 023290 256 KEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~ 273 (284)
.++|+|+.+++++.++|+
T Consensus 342 ~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 342 VKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHhcCHHHHHHHHHHHhh
Confidence 889999999999999985
No 31
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=2.7e-32 Score=235.18 Aligned_cols=235 Identities=26% Similarity=0.300 Sum_probs=199.7
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.+++.|....+.+.+. ++.+..++.++|||+|.+.+...... ...++.++..+++++|+++|+
T Consensus 160 ~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr 228 (398)
T cd03800 160 LLRAADRVIASTPQEAEELYSL----YGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGR 228 (398)
T ss_pred HHhhCCEEEEcCHHHHHHHHHH----ccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcc
Confidence 4568999999999887775443 44555679999999998876554321 122555666677899999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCCh-HHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
+.+.||++.+++++..+.+. .++++|+++|++..... .....++.+++++++.+++.++|++ +++..+|+
T Consensus 229 ~~~~k~~~~ll~a~~~l~~~-------~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 301 (398)
T cd03800 229 LDPRKGIDTLIRAYAELPEL-------RERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYR 301 (398)
T ss_pred cccccCHHHHHHHHHHHHHh-------CCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHH
Confidence 99999999999999988652 37899999998764322 1345577888888988899999996 68999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++++++.+.++++
T Consensus 302 ~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~ 377 (398)
T cd03800 302 AADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSR 377 (398)
T ss_pred hCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (284)
++++.+.++|+|+.+++++.
T Consensus 378 ~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 378 AGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHhCCHHHHHHHHh
Confidence 99999989999999999875
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.3e-32 Score=236.89 Aligned_cols=235 Identities=25% Similarity=0.312 Sum_probs=193.9
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccC-CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKM-PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~-~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
.++.+|.++++|..+.+++.+. ++... .++.+|+||+|.+.+.+.... ..++.....++.++++++|
T Consensus 151 ~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~g 218 (392)
T cd03805 151 TTGMADKIVVNSNFTASVFKKT----FPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLSIN 218 (392)
T ss_pred HhhCceEEEEcChhHHHHHHHH----hcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEEEe
Confidence 3677999999999988876553 33333 334699999998876543321 1223334556788999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC---hHHHHHHHHHHHH-cCCCCcEEEeccc--cCHH
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---TKFESELRNYVMQ-KKIQDRVHFVNKT--LTVA 165 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~---~~~~~~l~~~~~~-~~~~~~v~~~~~~--~~~~ 165 (284)
++.+.||++.+++++.++.+... ..++++|+++|+++... ..+.+.+++.+++ +++.++|.|+|++ +++.
T Consensus 219 rl~~~Kg~~~ll~a~~~l~~~~~----~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~ 294 (392)
T cd03805 219 RFERKKNIALAIEAFAILKDKLA----EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKE 294 (392)
T ss_pred eecccCChHHHHHHHHHHHhhcc----cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHH
Confidence 99999999999999999866321 01689999999875432 2356788889998 8999999999997 5678
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
.+|+.||++++||. .|+||++++|||+||+|||+++.++..+++.++.+|+++++ | +++++++|.+++++++.+.
T Consensus 295 ~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~~~ 369 (392)
T cd03805 295 LLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDLAD 369 (392)
T ss_pred HHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHHHH
Confidence 99999999999998 89999999999999999999999999999999999999976 5 8999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERI 268 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
++++++++.+.++|+|+.+++++
T Consensus 370 ~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 370 RMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999998764
No 33
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=6.3e-32 Score=238.10 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=193.9
Q ss_pred ccCCcccccccchhhHHHHHHH-----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRE 76 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~~r~ 76 (284)
.+..+|.++++|...++.+... +...+.....++.+|+||+|.+.+.+..+.. .+...+..+++
T Consensus 207 ~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~ 286 (476)
T cd03791 207 GIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQE 286 (476)
T ss_pred HHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHH
Confidence 3567899999999888775431 1222334568999999999998887643321 12344577899
Q ss_pred HhCCC--CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCc
Q 023290 77 SLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 154 (284)
Q Consensus 77 ~~~~~--~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (284)
++|++ ++.++|+++||+.+.||++.+++++..+.+ .+++|+++|.+.. .+.+.++++.+++ .++
T Consensus 287 ~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~ 352 (476)
T cd03791 287 ELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGR 352 (476)
T ss_pred HcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCc
Confidence 99985 678999999999999999999999998765 5599999998742 2556777777765 457
Q ss_pred EEEecc-c-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCC------ceeeecCCCCC
Q 023290 155 VHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT------TGLLHPVGKEG 226 (284)
Q Consensus 155 v~~~~~-~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~------~g~~~~~~d~~ 226 (284)
+.+++. . +.+..+|+.||++++||. +|+||++++|||+||+|||+++.++..+++.++. +|+++++.|
T Consensus 353 v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~-- 428 (476)
T cd03791 353 VAVLIGYDEALAHLIYAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN-- 428 (476)
T ss_pred EEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--
Confidence 776544 4 445689999999999999 8999999999999999999999999999999987 999999998
Q ss_pred hHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 227 ~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++++++|.++++ +++.+.++++++++ +.|+|+.+++++.++|+
T Consensus 429 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 429 ADALLAALRRALALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHh
Confidence 9999999999875 67777777776654 57999999999999986
No 34
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.9e-31 Score=238.74 Aligned_cols=219 Identities=18% Similarity=0.259 Sum_probs=175.0
Q ss_pred CCCeEEEecCCccccchhhhhhhHH-----------HHHHHHHHHHhCC--CCCCeEEEEeccccccccHHHHHHHHHHH
Q 023290 43 MPDTYVVHLGNSKELMEVAEDNVAK-----------RVLREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYES 109 (284)
Q Consensus 43 ~~~i~vi~~g~~~~~~~~~~~~~~~-----------~~~~~~~r~~~~~--~~~~~~i~~~g~~~~~k~~~~~~~a~~~l 109 (284)
.+++.|||+|+|...|.+......+ .......++.+|+ ++++++|+++||+.+.||++.+++|+.++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 5689999999999866542211100 0001223455675 44567899999999999999999999877
Q ss_pred HHHHHhhccCCCCeEEEEEecCC-CC---ChH---HHHHHHHHHHHcCCCCcEEEeccc------cCHHHHHh-hccEEE
Q 023290 110 LELIKEKKLEVPSVHAVIIGSDM-NA---QTK---FESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLV 175 (284)
Q Consensus 110 ~~~~~~~~~~~~~~~l~i~G~~~-~~---~~~---~~~~l~~~~~~~~~~~~v~~~~~~------~~~~~~~~-~ad~~~ 175 (284)
.+. .++++|+|+|++. +. ..+ ....+.++++++++.++|.|+|.. .++..+++ .+|+++
T Consensus 599 ~~l-------~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KRL-------RELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HHh-------CCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 441 2689999999862 11 111 235678889999999999999863 24555555 579999
Q ss_pred EcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHH----hhCHHHHHHHHHHH
Q 023290 176 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL----ATHVERRLTMGKRG 251 (284)
Q Consensus 176 ~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l----~~~~~~~~~~~~~~ 251 (284)
+||. +|+||++++|||+||+|||+|+.||..|++.++.+|+++++.| +++++++|.++ +.|++.++++++++
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999999998 99999998765 46999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 023290 252 YERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++.+.++|||+.+++++.++.
T Consensus 748 r~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 748 LQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999876
No 35
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=1.2e-31 Score=229.41 Aligned_cols=219 Identities=21% Similarity=0.331 Sum_probs=188.0
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..+|.+++.|....+.+.+. ++.. .++.++|||++...+..... .......++++|
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~----~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vg 211 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQ----FGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVA 211 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHH----hCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEE
Confidence 44678899999999888875543 4432 34899999999876543210 113556788999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
++.+.||++.+++++..+.+ +.++++|+++|.+. ....+...++++++.++|.+.|..+++..+|+.|
T Consensus 212 rl~~~K~~~~li~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 279 (372)
T cd04949 212 RLAPEKQLDQLIKAFAKVVK-------QVPDATLDIYGYGD-----EEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKA 279 (372)
T ss_pred ccCcccCHHHHHHHHHHHHH-------hCCCcEEEEEEeCc-----hHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhh
Confidence 99999999999999999876 34899999999986 4567778888889999999999889999999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
|+++.||. .||||++++|||++|+|||+++.+ +..+++.++.+|++++++| +++++++|..++++++.+.+++++
T Consensus 280 d~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~ 355 (372)
T cd04949 280 QLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEA 355 (372)
T ss_pred hEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999 899999999999999999999987 7899999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERI 268 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (284)
+++.+ ++|+|+.++++|
T Consensus 356 a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 356 AYENA-ERYSEENVWEKW 372 (372)
T ss_pred HHHHH-HHhhHHHHHhcC
Confidence 99984 679999998764
No 36
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.3e-31 Score=227.45 Aligned_cols=224 Identities=27% Similarity=0.315 Sum_probs=195.2
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
....++.+|.+++.|....+++.+. ++.+..++.++|||+|.+.+.... .....+.+.+++
T Consensus 124 ~~~~~~~~~~vi~~s~~~~~~l~~~----~~~~~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~ 184 (355)
T cd03799 124 LDEKLARADFVVAISEYNRQQLIRL----LGCDPDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILS 184 (355)
T ss_pred HHHHHhhCCEEEECCHHHHHHHHHh----cCCCcccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEE
Confidence 3455678999999999988875553 567788999999999987665432 011346678899
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 167 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~ 167 (284)
+|++.+.||++.+++++..+.+ +.++++++++|.+. ..+.+++.++++++.++|.+.|+. +++..+
T Consensus 185 ~g~~~~~k~~~~l~~~~~~l~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~ 252 (355)
T cd03799 185 VGRLVEKKGLDYLLEALALLKD-------RGIDFRLDIVGDGP-----LRDELEALIAELGLEDRVTLLGAKSQEEVREL 252 (355)
T ss_pred EeeeccccCHHHHHHHHHHHhh-------cCCCeEEEEEECCc-----cHHHHHHHHHHcCCCCeEEECCcCChHHHHHH
Confidence 9999999999999999998765 33799999999876 567788888888888899999997 789999
Q ss_pred HhhccEEEEcCCCCc------CccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 168 LAAIDVLVQNSQAWG------ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~------e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
|+.||++++||. . |++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++++
T Consensus 253 ~~~adi~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 328 (355)
T cd03799 253 LRAADLFVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDP 328 (355)
T ss_pred HHhCCEEEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 999999999998 6 999999999999999999999999999999998999999888 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 023290 242 ERRLTMGKRGYERVKEIFQEHHMAERI 268 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
+.+.++++++++.+.++|+|+.+++++
T Consensus 329 ~~~~~~~~~a~~~~~~~~s~~~~~~~l 355 (355)
T cd03799 329 ELRREMGEAGRARVEEEFDIRKQAARL 355 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999988753
No 37
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.5e-31 Score=227.39 Aligned_cols=227 Identities=16% Similarity=0.159 Sum_probs=178.7
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|....+.+.+. .+....++.+||||+|.+.+.+.... .-.+.++..+++|+|+
T Consensus 169 ~~~~ad~vi~~S~~~~~~l~~~----~~~~~~~v~vipngvd~~~f~~~~~~------------~~~~~~~~~~ilf~G~ 232 (397)
T TIGR03087 169 IAARFDAATFVSRAEAELFRRL----APEAAGRITAFPNGVDADFFSPDRDY------------PNPYPPGKRVLVFTGA 232 (397)
T ss_pred HHhhCCeEEEcCHHHHHHHHHh----CCCCCCCeEEeecccchhhcCCCccc------------cCCCCCCCcEEEEEEe
Confidence 4568999999999988875542 34456789999999999877543211 0012235578899999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhcc
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad 172 (284)
+.+.||++.++.++..+...+.+ ..++++|+|+|+++. ..+ ++++..++|.|+|+++++..+|+.||
T Consensus 233 l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~~------~~~----~~l~~~~~V~~~G~v~~~~~~~~~ad 299 (397)
T TIGR03087 233 MDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKPS------PAV----RALAALPGVTVTGSVADVRPYLAHAA 299 (397)
T ss_pred cCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCCh------HHH----HHhccCCCeEEeeecCCHHHHHHhCC
Confidence 99999999998655544333332 238999999998752 222 33344568999999999999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
++++||. +.||+|++++|||+||+|||+|+.++. .+...+.+|+++. +| +++++++|.++++|++.+++|+++++
T Consensus 300 v~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~--~~~la~ai~~ll~~~~~~~~~~~~ar 374 (397)
T TIGR03087 300 VAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-AD--PADFAAAILALLANPAEREELGQAAR 374 (397)
T ss_pred EEEeccc-ccCCcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CC--HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999997 268999999999999999999987543 3333455788886 66 99999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHH
Q 023290 253 ERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+.+.++|+|+.+++++.++|.
T Consensus 375 ~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 375 RRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999874
No 38
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=2.7e-31 Score=225.79 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=181.4
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
....++.+++.|....+++... ....++.+||||+|...+...+.. ...++..+..+++++|+++|+
T Consensus 134 ~~~~~~~~i~~s~~~~~~~~~~------~~~~~~~vi~ngvd~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~vGr 200 (358)
T cd03812 134 INRLATDYLACSEEAGKWLFGK------VKNKKFKVIPNGIDLEKFIFNEEI-------RKKRRELGILEDKFVIGHVGR 200 (358)
T ss_pred HHhcCCEEEEcCHHHHHHHHhC------CCcccEEEEeccCcHHHcCCCchh-------hhHHHHcCCCCCCEEEEEEec
Confidence 3567888999999888875442 456789999999998876544321 112566777778899999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhcc
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad 172 (284)
+.+.||++.+++++..+.+ ..++++++++|+++ ..+.+++.++++++.++|.++|..+++.++|+.||
T Consensus 201 ~~~~Kg~~~li~a~~~l~~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 268 (358)
T cd03812 201 FSEQKNHEFLIEIFAELLK-------KNPNAKLLLVGDGE-----LEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMD 268 (358)
T ss_pred cccccChHHHHHHHHHHHH-------hCCCeEEEEEeCCc-----hHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcC
Confidence 9999999999999999876 34899999999886 56788888889999999999999899999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
++++||. .|++|++++|||++|+|||+++.++..+.+.+ ..+++..+++ +++++++|.+++++++.++.+...+.
T Consensus 269 i~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~ 343 (358)
T cd03812 269 VFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKK 343 (358)
T ss_pred EEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhh
Confidence 9999999 89999999999999999999999999999988 4556665555 89999999999999999988888777
Q ss_pred HHHHH
Q 023290 253 ERVKE 257 (284)
Q Consensus 253 ~~~~~ 257 (284)
.....
T Consensus 344 ~~~~~ 348 (358)
T cd03812 344 KGLDA 348 (358)
T ss_pred ccchh
Confidence 65543
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=2e-31 Score=226.64 Aligned_cols=221 Identities=16% Similarity=0.166 Sum_probs=181.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
+..+|.++++|..+.+++.+ ++.+.+++.++|||+|.+.+..... ..+++++++++|++
T Consensus 131 ~~~~d~~i~~S~~~~~~~~~-----~~~~~~ki~vi~N~id~~~~~~~~~----------------~~~~~~~i~~~Grl 189 (359)
T PRK09922 131 ITCADYHLAISSGIKEQMMA-----RGISAQRISVIYNPVEIKTIIIPPP----------------ERDKPAVFLYVGRL 189 (359)
T ss_pred hhcCCEEEEcCHHHHHHHHH-----cCCCHHHEEEEcCCCCHHHccCCCc----------------ccCCCcEEEEEEEE
Confidence 47889999999988877543 4677789999999998653321110 01346788999998
Q ss_pred cc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc----CHHHH
Q 023290 94 SR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPY 167 (284)
Q Consensus 94 ~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~----~~~~~ 167 (284)
.+ .||++.+++++.++. ++++|+++|+|+ ..+.+++.++++++.++|.|+|+++ ++..+
T Consensus 190 ~~~~~k~~~~l~~a~~~~~----------~~~~l~ivG~g~-----~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 190 KFEGQKNVKELFDGLSQTT----------GEWQLHIIGDGS-----DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred ecccCcCHHHHHHHHHhhC----------CCeEEEEEeCCc-----cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 64 599999999998752 579999999986 5678999999999999999999863 46777
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-CCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 246 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~ 246 (284)
|..||++++||. +||||++++||||||+|||+++ .++..|++.++.+|++++++| +++++++|.+++++++.+.
T Consensus 255 ~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~- 329 (359)
T PRK09922 255 IKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ- 329 (359)
T ss_pred HhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC-
Confidence 888999999999 8999999999999999999999 899999999999999999998 9999999999999987541
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 247 MGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
.++......+|+.+.+.+++.++|.+++.
T Consensus 330 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 330 --HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 22222334568889999999999988764
No 40
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=7.5e-31 Score=223.30 Aligned_cols=226 Identities=23% Similarity=0.284 Sum_probs=188.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
+..++.+++.+......... .....++.++|||++.+.+...... .. ++.++.+++.++++++|++
T Consensus 147 ~~~~~~i~~~s~~~~~~~~~------~~~~~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~ 212 (375)
T cd03821 147 LQAAAAVHATSEQEAAEIRR------LGLKAPIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLGRL 212 (375)
T ss_pred HhcCCEEEECCHHHHHHHHh------hCCcccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEeCc
Confidence 44566677776554443322 2556789999999998877654321 12 6777777888999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhc
Q 023290 94 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 94 ~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~a 171 (284)
.+.||++.+++++..+.+ +.++++|+++|.+... +...++..++++++.++|.++|++ +++..+|+.|
T Consensus 213 ~~~K~~~~li~a~~~l~~-------~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 282 (375)
T cd03821 213 HPKKGLDLLIEAFAKLAE-------RFPDWHLVIAGPDEGG---YRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADA 282 (375)
T ss_pred chhcCHHHHHHHHHHhhh-------hcCCeEEEEECCCCcc---hHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhC
Confidence 999999999999998876 3389999999986532 455566666888888999999997 4899999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
|++++||. .|++|++++|||+||+|||+++.++..+++.+ ..|++++.+ +++++++|.+++++++.++++++++
T Consensus 283 dv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~ 356 (375)
T cd03821 283 DLFVLPSH--SENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENG 356 (375)
T ss_pred CEEEeccc--cCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999 89999999999999999999999999999988 788888754 6999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHH
Q 023290 252 YERVKEIFQEHHMAERIA 269 (284)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (284)
++.+.++|+|+.+++++.
T Consensus 357 ~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 357 RALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHhcCHHHHHHHhh
Confidence 999899999999999875
No 41
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=3.4e-31 Score=220.67 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=167.2
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhccc-CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
...+|.++++|..+.+.+.+ .+.+ .+++.+||||+|.+.+.+.... ....+++++.|+
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~~~~~----------------~~~~~vl~~~g~ 150 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEYKPKE----------------KPHPCVLAILPH 150 (331)
T ss_pred hccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCCCccc----------------cCCCEEEEEecc
Confidence 47799999999999887554 3444 4689999999998877543211 124567778889
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhcc
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad 172 (284)
+.+.||++.+++|+..+.+ +.++++++++|++.. ...+ .++.. +......+++..+|+.||
T Consensus 151 ~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~~-----~~~l------~~~~~-~~~~v~~~~l~~~y~~aD 211 (331)
T PHA01630 151 SWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNML-----DPRL------FGLNG-VKTPLPDDDIYSLFAGCD 211 (331)
T ss_pred ccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCccc-----chhh------ccccc-eeccCCHHHHHHHHHhCC
Confidence 9999999999999998865 337899999996531 1111 12221 111122379999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCC-----------------CCChHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG-----------------KEGITPLAKNIV 235 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~-----------------d~~~~~~~~~i~ 235 (284)
++++||. .|+||++++||||||+|||+|+.++..|++.++.+|++++.+ +.+.+++++++.
T Consensus 212 v~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii 289 (331)
T PHA01630 212 ILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLL 289 (331)
T ss_pred EEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHH
Confidence 9999999 899999999999999999999999999999999888777532 112788899998
Q ss_pred HHhhCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 236 KLATHV--ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 236 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+++.++ +.++++..++...+.++|||+.+++++.++|++
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 290 EALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 988863 445555555556677889999999999999964
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=7.3e-31 Score=222.90 Aligned_cols=222 Identities=28% Similarity=0.322 Sum_probs=187.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..+|.+++.|....+.+... . ....++.++|||++...+...... .. .....+.+.+.++++|
T Consensus 133 ~~~~~~d~vi~~s~~~~~~~~~~----~-~~~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G 198 (357)
T cd03795 133 RFLRRADAIVATSPNYAETSPVL----R-RFRDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVG 198 (357)
T ss_pred HHHHhcCEEEeCcHHHHHHHHHh----c-CCccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEec
Confidence 35677899999999887764432 2 223789999999998876643321 00 2233455678899999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++.++ .+++++++|.+. ....+++.+++.+..++|.|+|++ +++..+|+
T Consensus 199 ~~~~~K~~~~li~a~~~l-----------~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~ 262 (357)
T cd03795 199 RLVYYKGLDVLLEAAAAL-----------PDAPLVIVGEGP-----LEAELEALAAALGLLDRVRFLGRLDDEEKAALLA 262 (357)
T ss_pred ccccccCHHHHHHHHHhc-----------cCcEEEEEeCCh-----hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH
Confidence 999999999999999876 378999999886 667888888888888999999997 56899999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec-CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~-~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
.||++++||....|++|++++|||++|+|||+++.++..+.+.+ +.+|++++++| +++++++|.+++++++.+++++
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~ 340 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLG 340 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHH
Confidence 99999999863369999999999999999999999999998876 89999999988 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHH
Q 023290 249 KRGYERVKEIFQEHHMA 265 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ 265 (284)
+++++.+.++|+|+.++
T Consensus 341 ~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 341 EAARERAEEEFTADRMV 357 (357)
T ss_pred HHHHHHHHHhcchHhhC
Confidence 99999999999999763
No 43
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.97 E-value=2.8e-30 Score=218.87 Aligned_cols=234 Identities=30% Similarity=0.397 Sum_probs=201.7
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+.+.+. ++....++.++|||++...+.... ...+.......+.+.++++
T Consensus 139 ~~~~~~~d~~i~~s~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~ 205 (374)
T cd03801 139 RRALRRADRIIAVSEATREELREL----GGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFV 205 (374)
T ss_pred HHHHHhCCEEEEecHHHHHHHHhc----CCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEe
Confidence 345678899999999888875553 444446899999999988765432 1123334445677899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.+.||++.+++++..+.+ +.++++|+++|.+. ....+++.+++.+..++|.+.|.+ +++..+|
T Consensus 206 g~~~~~k~~~~~i~~~~~~~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 273 (374)
T cd03801 206 GRLVPRKGVDLLLEALAKLRK-------EYPDVRLVIVGDGP-----LREELEALAAELGLGDRVTFLGFVPDEDLPALY 273 (374)
T ss_pred cchhhhcCHHHHHHHHHHHhh-------hcCCeEEEEEeCcH-----HHHHHHHHHHHhCCCcceEEEeccChhhHHHHH
Confidence 999999999999999998865 23789999999764 677888888888888999999997 8999999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
+.||++++|+. .+++|++++|||++|+|||+++.++..+++.++.+|+++++.| +++++++|.+++.+++.+.+++
T Consensus 274 ~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~ 349 (374)
T cd03801 274 AAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLG 349 (374)
T ss_pred HhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHH
Confidence 99999999999 7999999999999999999999999999999899999999988 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++++.+.+.|+|+.+++++.++|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 350 EAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 9999889999999999999998873
No 44
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=3.1e-30 Score=219.46 Aligned_cols=233 Identities=22% Similarity=0.274 Sum_probs=186.1
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|. +..++.+.. ...+++.++|||++...+..... .++.+...+.++++++
T Consensus 129 ~~~~~~~d~ii~~s~---~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~ 191 (366)
T cd03822 129 RLLLRRADAVIVMSS---ELLRALLLR---AYPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTF 191 (366)
T ss_pred HHHHhcCCEEEEeeH---HHHHHHHhh---cCCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEE
Confidence 345678999999972 222221111 12478999999999876543321 1233345577899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-c--cCHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPY 167 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~--~~~~~~ 167 (284)
|++.+.||++.+++++..+.+ +.++++|+++|.+............++++++++.++|.++|. . +++..+
T Consensus 192 G~~~~~K~~~~ll~a~~~~~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~ 264 (366)
T cd03822 192 GLLRPYKGLELLLEALPLLVA-------KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPEL 264 (366)
T ss_pred eeccCCCCHHHHHHHHHHHHh-------hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHH
Confidence 999999999999999998866 338999999998764321111111134778889899999987 4 789999
Q ss_pred HhhccEEEEcCCCCcC--ccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 168 LAAIDVLVQNSQAWGE--CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e--~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
|+.||++++||. .| ++|++++|||++|+|||+++.++ .+.+.++.+|++++++| +++++++|..++++++.+.
T Consensus 265 ~~~ad~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 265 FSAADVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQ 339 (366)
T ss_pred HhhcCEEEeccc--ccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHH
Confidence 999999999999 88 99999999999999999999999 67777888999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++++++.+.+ |+|+.+++++.++|+
T Consensus 340 ~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 340 ALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred HHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 999999999887 999999999999873
No 45
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=9.8e-31 Score=225.81 Aligned_cols=228 Identities=21% Similarity=0.207 Sum_probs=180.0
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
....+.+|.++++|..+.+.+.+. ++. ..++.+|+||+|.+.+...+. ...++.++|+++
T Consensus 184 ~~~~~~aD~ii~~S~~~~~~~~~~----~~~-~~~~~vi~~gvd~~~~~~~~~---------------~~~~~~~~il~v 243 (419)
T cd03806 184 GLAGSFADVVMVNSTWTRNHIRSL----WKR-NTKPSIVYPPCDVEELLKLPL---------------DEKTRENQILSI 243 (419)
T ss_pred HHHhhcCCEEEECCHHHHHHHHHH----hCc-CCCcEEEcCCCCHHHhccccc---------------ccccCCcEEEEE
Confidence 345789999999999998886553 332 247999999999876543221 012356789999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC-ChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 167 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~ 167 (284)
|++.+.||++.+++|+..+.+..++. ..++++|+|+|++... +.++.+.++++++++++.++|.|+|.. +++..+
T Consensus 244 gr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~ 321 (419)
T cd03806 244 AQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEE 321 (419)
T ss_pred EeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHH
Confidence 99999999999999999987643210 0136999999986432 234678899999999999999999985 789999
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc-ceeee---cCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-TEIVV---NGTTGLLHPVGKEGITPLAKNIVKLATHVER 243 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~-~e~v~---~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~ 243 (284)
|+.||++++|+. .|+||++++|||+||+|||+++.++. .+++. ++.+|++++ | +++++++|.+++++++.
T Consensus 322 l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d--~~~la~ai~~ll~~~~~ 395 (419)
T cd03806 322 LSTASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--T--AEEYAEAIEKILSLSEE 395 (419)
T ss_pred HHhCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC--C--HHHHHHHHHHHHhCCHH
Confidence 999999999998 89999999999999999999998764 57887 789999974 5 99999999999996554
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHH
Q 023290 244 RLTMGKRGYERVKEIFQEHHMAE 266 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
...+..++++.+.++|+++.+.+
T Consensus 396 ~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 396 ERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHHHHhhCHHHhcc
Confidence 44434555556778899998754
No 46
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=5.2e-30 Score=218.21 Aligned_cols=220 Identities=17% Similarity=0.259 Sum_probs=179.9
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|+...+.+++. +|.. . .+||||+|...+... ...++.++++++. .++++|+
T Consensus 140 ~~~~ad~ii~~s~~~~~~~~~~----~~~~--~-~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~ 201 (363)
T cd04955 140 AVKFADRLIADSPGIKEYLKEK----YGRD--S-TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGR 201 (363)
T ss_pred HHhhccEEEeCCHHHHHHHHHh----cCCC--C-eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEec
Confidence 3567899999999998886543 4443 2 899999998765430 2234556665444 5679999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHH-HcCCCCcEEEeccc--cCHHHHHh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
+.+.||++.+++++.++. .+++|+++|+++.. ..+.+.++ .++..++|.++|++ +++..+|+
T Consensus 202 ~~~~Kg~~~li~a~~~l~----------~~~~l~ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~ 266 (363)
T cd04955 202 IVPENNIDDLIEAFSKSN----------SGKKLVIVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLR 266 (363)
T ss_pred ccccCCHHHHHHHHHhhc----------cCceEEEEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHH
Confidence 999999999999998762 47899999997522 22333333 56777899999986 67889999
Q ss_pred hccEEEEcCCCCc-CccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 170 AIDVLVQNSQAWG-ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 170 ~ad~~~~ps~~~~-e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
.||++++||. . |++|++++|||+||+|||+++.++..|++.+ +|.++++++ . ++++|.+++++++.+.+++
T Consensus 267 ~ad~~v~ps~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 267 YAALFYLHGH--SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMA 338 (363)
T ss_pred hCCEEEeCCc--cCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHH
Confidence 9999999998 6 9999999999999999999999999999965 788888765 3 9999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++++.+.++|||+.+++++.++|+
T Consensus 339 ~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 339 KAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999989999999999999874
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=1.2e-29 Score=216.04 Aligned_cols=225 Identities=23% Similarity=0.263 Sum_probs=187.7
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
..+.+++.|....+.+.+ .+..+..++.++|||++.+.+.+.. +...++.++++++..++++.|+...
T Consensus 135 ~~~~~v~~s~~~~~~~~~----~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~ 202 (365)
T cd03825 135 LNLTIVAPSRWLADCARS----SSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGGT 202 (365)
T ss_pred CCcEEEehhHHHHHHHHh----ccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCCC
Confidence 455677888777766443 3446678999999999988775433 2456778888888777777776655
Q ss_pred --cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc---CHHHHHhh
Q 023290 96 --GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLAA 170 (284)
Q Consensus 96 --~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~---~~~~~~~~ 170 (284)
.||++.+++++..+.+. ..++++++++|.+... .. .+...+|.++|+.. ++..+|+.
T Consensus 203 ~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~~~-----~~-------~~~~~~v~~~g~~~~~~~~~~~~~~ 264 (365)
T cd03825 203 DPRKGFDELIEALKRLAER------WKDDIELVVFGASDPE-----IP-------PDLPFPVHYLGSLNDDESLALIYSA 264 (365)
T ss_pred ccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCchh-----hh-------ccCCCceEecCCcCCHHHHHHHHHh
Confidence 89999999999887542 1278999999987521 11 14456899999874 68899999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|++++..| +++++++|.+++.+++.+.+++++
T Consensus 265 ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~ 340 (365)
T cd03825 265 ADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGEA 340 (365)
T ss_pred CCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999 8999999999999999999999999999999988999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+++.+.++|||+.+++++.++|++
T Consensus 341 ~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 341 ARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999999999999999999976
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=1.4e-29 Score=215.51 Aligned_cols=228 Identities=24% Similarity=0.383 Sum_probs=193.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|....+++.. ++. ..++.++|||+|...+..... ...++.++..++.++++++|
T Consensus 144 ~~~~~~d~i~~~s~~~~~~~~~-----~~~-~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G 209 (374)
T cd03817 144 RFYNRCDAVIAPSEKIADLLRE-----YGV-KRPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVG 209 (374)
T ss_pred HHhhhCCEEEeccHHHHHHHHh-----cCC-CCceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEe
Confidence 4457899999999988777554 333 345899999999887665432 22366677777889999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+... .++++++++|++. ..+.+++.++++++.++|.++|.+ +++..+|+
T Consensus 210 ~~~~~k~~~~l~~~~~~~~~~-------~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 277 (374)
T cd03817 210 RLAKEKNIDFLIRAFARLLKE-------EPDVKLVIVGDGP-----EREELEELARELGLADRVIFTGFVPREELPDYYK 277 (374)
T ss_pred eeecccCHHHHHHHHHHHHHh-------CCCeEEEEEeCCc-----hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHH
Confidence 999999999999999987652 3789999999876 667888888888988999999987 78999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.||++++|+. .|++|++++|||+||+|||+++.++..+++.++.+|+++++.+ . +++++|.+++++++.++++++
T Consensus 278 ~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~ 352 (374)
T cd03817 278 AADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSK 352 (374)
T ss_pred HcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999999999999876 5 999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
++++.+.+.+ +.+++.++|++
T Consensus 353 ~~~~~~~~~~----~~~~~~~~~~~ 373 (374)
T cd03817 353 NAEESAEKFS----FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHH----HHHHHHHHHhc
Confidence 9999887644 56666666654
No 49
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=1.1e-29 Score=213.78 Aligned_cols=217 Identities=22% Similarity=0.288 Sum_probs=184.6
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|...... ....+..++.++|||++...+... ...+...++++
T Consensus 130 ~~~~~~~d~ii~~s~~~~~~-------~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~ 184 (348)
T cd03820 130 RLLYRRADAVVVLTEEDRAL-------YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAV 184 (348)
T ss_pred HHHHhcCCEEEEeCHHHHHH-------hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEE
Confidence 34477899999999988611 123567789999999988765432 12456788999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
|++.+.||++.+++++..+.+ ..++++|+++|.+. ....+.+.+++.++.++|.+.|..+++..+|+.
T Consensus 185 g~~~~~K~~~~l~~~~~~l~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 252 (348)
T cd03820 185 GRLVPQKGFDLLIEAWAKIAK-------KHPDWKLRIVGDGP-----EREALEALIKELGLEDRVILLGFTKNIEEYYAK 252 (348)
T ss_pred EeeccccCHHHHHHHHHHHHh-------cCCCeEEEEEeCCC-----CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh
Confidence 999999999999999998865 33899999999876 456777788889998999999998999999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
||+++.||. .|++|++++|||++|+|||+++.+ +..+++.++.+|+++++.| +++++++|.++++|++.++++++
T Consensus 253 ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~ 328 (348)
T cd03820 253 ASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGA 328 (348)
T ss_pred CCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999 899999999999999999999875 4566777777999999988 99999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (284)
++++.+ +.|+|+.+++++.
T Consensus 329 ~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 329 NARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHHHHH-HHhCHHHHHHHhc
Confidence 997655 6799999998875
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=1.1e-29 Score=214.76 Aligned_cols=223 Identities=24% Similarity=0.327 Sum_probs=186.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhccc-CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
..++.+|.+++.|....+.+.+. ...+ ..++.+++++++...+...... ..++.+.++++
T Consensus 134 ~~~~~~d~ii~~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~ 194 (359)
T cd03808 134 LALRFTDKVIFQNEDDRDLALKL----GIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFV 194 (359)
T ss_pred HHHhhccEEEEcCHHHHHHHHHh----cCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEE
Confidence 34567899999999988876553 2222 4567778889888766543210 13467899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHH-HHHHcCCCCcEEEeccccCHHHHHh
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
|++.+.||++.+++++..+.+ ..++++|+++|.+.... .... .+.+.+..++|.++|+.+++..+|+
T Consensus 195 G~~~~~k~~~~li~~~~~l~~-------~~~~~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 262 (359)
T cd03808 195 ARLLKDKGIDELLEAARILKA-------KGPNVRLLLVGDGDEEN-----PAAILEIEKLGLEGRVEFLGFRDDVPELLA 262 (359)
T ss_pred eccccccCHHHHHHHHHHHHh-------cCCCeEEEEEcCCCcch-----hhHHHHHHhcCCcceEEEeeccccHHHHHH
Confidence 999999999999999988765 34899999999976432 2222 3566677789999999999999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++.+++.+.++++
T Consensus 263 ~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 263 AADVFVLPSY--REGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred hccEEEecCc--ccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999 7999999999999999999999999999999899999999988 99999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (284)
++++.+.++|+|+.+++++.
T Consensus 339 ~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 339 AARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHhcCHHHHHHHhh
Confidence 99999999999999998875
No 51
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.1e-29 Score=215.75 Aligned_cols=223 Identities=24% Similarity=0.305 Sum_probs=186.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
...+.+|.+++.|....+.+.+ ....++.+++||+|.+.+.+.... ...+.+++ .++.++++++|
T Consensus 140 ~~~~~~d~i~~~s~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G 204 (364)
T cd03814 140 WFHNRADRVLVPSPSLADELRA-------RGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVG 204 (364)
T ss_pred HHHHhCCEEEeCCHHHHHHHhc-------cCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEe
Confidence 3456789999999988774332 344679999999998877544321 23344555 45678899999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+.. + ++++|+++|.++ ....++ +..++|.++|+. +++..+|+
T Consensus 205 ~~~~~k~~~~~i~~~~~l~~-------~-~~~~l~i~G~~~-----~~~~~~------~~~~~v~~~g~~~~~~~~~~~~ 265 (364)
T cd03814 205 RLAPEKNLEALLDADLPLRR-------R-PPVRLVIVGDGP-----ARARLE------ARYPNVHFLGFLDGEELAAAYA 265 (364)
T ss_pred ccccccCHHHHHHHHHHhhh-------c-CCceEEEEeCCc-----hHHHHh------ccCCcEEEEeccCHHHHHHHHH
Confidence 99999999999999998864 3 689999999875 333333 345689999964 78999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.||+++.||. .|++|++++|||+||+|||+++.++..+++.++.+|+++++.+ .++++++|.+++.|++.+.++++
T Consensus 266 ~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~ 341 (364)
T cd03814 266 SADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAA 341 (364)
T ss_pred hCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999989999999988 99999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++.+ ++|+|+.+.+++.++|+
T Consensus 342 ~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 342 RARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHH-hhcCHHHHHHHHHHhhC
Confidence 999988 67999999999998873
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.1e-29 Score=215.72 Aligned_cols=232 Identities=30% Similarity=0.438 Sum_probs=200.0
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+.+.+. +.+..++.+++||+|...+...... .. ...+...+.+.++++
T Consensus 143 ~~~~~~~d~ii~~s~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~ 208 (377)
T cd03798 143 RRALRRADAVIAVSEALADELKAL-----GIDPEKVTVIPNGVDTERFSPADRA-------EA--RKLGLPEDKKVILFV 208 (377)
T ss_pred HHHHhcCCeEEeCCHHHHHHHHHh-----cCCCCceEEcCCCcCcccCCCcchH-------HH--HhccCCCCceEEEEe
Confidence 355678999999999988876552 2577899999999998877654321 11 344555678899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.+.||++.+++++..+.+ ++++++++++|.+. ....+++.+++.+..++|.+.|+. +++..+|
T Consensus 209 g~~~~~k~~~~li~~~~~~~~-------~~~~~~l~i~g~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 276 (377)
T cd03798 209 GRLVPRKGIDYLIEALARLLK-------KRPDVHLVIVGDGP-----LREALEALAAELGLEDRVTFLGAVPHEEVPAYY 276 (377)
T ss_pred ccCccccCHHHHHHHHHHHHh-------cCCCeEEEEEcCCc-----chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHH
Confidence 999999999999999998865 33789999999875 456777888888888899999987 6799999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
+.||++++|+. .+++|++++|||++|+|||+++.++..+++.++.+|+++++.| +++++++|.+++++++. ++.
T Consensus 277 ~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~ 350 (377)
T cd03798 277 AAADVFVLPSL--REGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLG 350 (377)
T ss_pred HhcCeeecchh--hccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHh
Confidence 99999999999 8999999999999999999999999999999999999999998 99999999999999876 788
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
.++++.+.+.|+|+.+++++.++|++
T Consensus 351 ~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 351 RAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88889999999999999999999875
No 53
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=7.4e-30 Score=217.04 Aligned_cols=229 Identities=21% Similarity=0.192 Sum_probs=189.0
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
....++.+|.+++.|+...+.+.+ .++.+..++.++|||++...+...... . +.......+++++++
T Consensus 134 ~~~~~~~~d~~i~~s~~~~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~i~~ 200 (365)
T cd03809 134 LRRALRRADAIITVSEATKRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAEA-------E--VLRALYLLPRPYFLY 200 (365)
T ss_pred HHHHHHHcCEEEEccHHHHHHHHH----HhCcCHHHEEeeccccCccccCCCchH-------H--HHHHhcCCCCCeEEE
Confidence 345567889999999988887554 356667789999999998877654321 1 334444567788999
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 167 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~ 167 (284)
+|++.+.||++.+++++..+.. ..++++|+++|.+.... .......++.+..++|.++|.. +++..+
T Consensus 201 ~G~~~~~K~~~~~l~~~~~~~~-------~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 269 (365)
T cd03809 201 VGTIEPRKNLERLLEAFARLPA-------KGPDPKLVIVGKRGWLN----EELLARLRELGLGDRVRFLGYVSDEELAAL 269 (365)
T ss_pred eCCCccccCHHHHHHHHHHHHH-------hcCCCCEEEecCCcccc----HHHHHHHHHcCCCCeEEECCCCChhHHHHH
Confidence 9999999999999999998866 22578999999865432 2233333667888899999997 789999
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 247 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~ 247 (284)
|+.||++++||. .|++|++++|||++|+|||+++.+++.+++. .+|+++++.| +++++++|.+++.|++.+.++
T Consensus 270 ~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~--~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~ 343 (365)
T cd03809 270 YRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVAG--DAALYFDPLD--PEALAAAIERLLEDPALREEL 343 (365)
T ss_pred Hhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCccceec--CceeeeCCCC--HHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998 8999999999999999999999999999984 4688999888 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHH
Q 023290 248 GKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
++++++.+ +.|+|+.+++++.
T Consensus 344 ~~~~~~~~-~~~sw~~~~~~~~ 364 (365)
T cd03809 344 RERGLARA-KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHH-HhCCHHHHHHHHh
Confidence 99999655 5799999998875
No 54
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=2.3e-29 Score=212.13 Aligned_cols=220 Identities=27% Similarity=0.346 Sum_probs=188.6
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+++.+. ++.+..++.++|||++...+...... . . .++..+++++++++
T Consensus 130 ~~~~~~~d~ii~~s~~~~~~~~~~----~~~~~~~~~vi~~~~~~~~~~~~~~~-------~-~--~~~~~~~~~~i~~~ 195 (353)
T cd03811 130 RKLYRRADKIVAVSEGVKEDLLKL----LGIPPDKIEVIYNPIDIEEIRALAEE-------P-L--ELGIPPDGPVILAV 195 (353)
T ss_pred HhhccccceEEEeccchhhhHHHh----hcCCccccEEecCCcChhhcCcccch-------h-h--hcCCCCCceEEEEE
Confidence 456688999999999998885554 55556889999999998876544321 0 0 34456678899999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
|++.+.||++.+++++..+.+ ..++++|+++|.+. ....+++.+++++..++|.+.|..+++.++|+.
T Consensus 196 g~~~~~k~~~~~i~~~~~l~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 196 GRLSPQKGFDTLIRAFALLRK-------EGPDARLVILGDGP-----LREELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred ecchhhcChHHHHHHHHHhhh-------cCCCceEEEEcCCc-----cHHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 999999999999999998865 23789999999876 556777888999998999999999999999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHH---HHHHHHHhhCHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPL---AKNIVKLATHVERRLTM 247 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~---~~~i~~l~~~~~~~~~~ 247 (284)
||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|+++++.+ ++++ ++++..+..+++.+.++
T Consensus 264 ~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 339 (353)
T cd03811 264 ADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERL 339 (353)
T ss_pred CCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHH
Confidence 999999999 8999999999999999999999999999999999999999988 8888 78888888899999999
Q ss_pred HHHHHHHHHHhcC
Q 023290 248 GKRGYERVKEIFQ 260 (284)
Q Consensus 248 ~~~~~~~~~~~~~ 260 (284)
+.++++.+.++|+
T Consensus 340 ~~~~~~~~~~~~~ 352 (353)
T cd03811 340 AAAARERVAREYS 352 (353)
T ss_pred HHHHHHHHHHHhc
Confidence 9988888888776
No 55
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=3.1e-29 Score=206.69 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=166.6
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCC-CCCeEEEE
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVR-NEDLLFAI 89 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~ 89 (284)
.+.+..-+.+|++|+.+++.+.+ .|++.+ + +|++|+|.+.+.+.... ...++++++.. ++.+++++
T Consensus 87 ~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~-i-~I~~GVD~~~f~p~~~~------~~~~r~~~~~~~~~~~~i~~ 153 (335)
T PHA01633 87 NKYLLQDVKFIPNSKFSAENLQE-----VGLQVD-L-PVFHGINFKIVENAEKL------VPQLKQKLDKDFPDTIKFGI 153 (335)
T ss_pred HHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc-e-eeeCCCChhhcCccchh------hHHHHHHhCcCCCCCeEEEE
Confidence 34445566889999999887553 466544 3 47889998877653311 23456666643 46778899
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec---cc--cCH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KT--LTV 164 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~---~~--~~~ 164 (284)
+||+.++||++.+++|+..+.+..++. ..+++++++|.+ ..+++++.++|.|+| .. +++
T Consensus 154 vGRl~~~KG~~~LI~A~~~L~~~~p~~---~~~i~l~ivG~~-------------~~~~l~l~~~V~f~g~~G~~~~~dl 217 (335)
T PHA01633 154 VSGLTKRKNMDLMLQVFNELNTKYPDI---AKKIHFFVISHK-------------QFTQLEVPANVHFVAEFGHNSREYI 217 (335)
T ss_pred EeCCccccCHHHHHHHHHHHHHhCCCc---cccEEEEEEcHH-------------HHHHcCCCCcEEEEecCCCCCHHHH
Confidence 999999999999999999987632110 024678877741 234567788999985 32 679
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec------------------CCceeeecCCCCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------------------GTTGLLHPVGKEG 226 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~------------------~~~g~~~~~~d~~ 226 (284)
..+|+.||++++||. .||||++++|||+||+|||+++.+++.|++.+ ...|+.++..|
T Consensus 218 ~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d-- 293 (335)
T PHA01633 218 FAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ-- 293 (335)
T ss_pred HHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--
Confidence 999999999999999 89999999999999999999999998887542 22366777777
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (284)
+++++++|..+++..+ +...+.++++.++ .|+|+.+.+++++
T Consensus 294 ~~~la~ai~~~~~~~~-~~~~~~~~~~~a~-~f~~~~~~~~~~~ 335 (335)
T PHA01633 294 IEDMANAIILAFELQD-REERSMKLKELAK-KYDIRNLYTRFLE 335 (335)
T ss_pred HHHHHHHHHHHHhccC-hhhhhHHHHHHHH-hcCHHHHHHHhhC
Confidence 9999999999965322 2233566776664 6999999998863
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=5.2e-29 Score=215.21 Aligned_cols=233 Identities=13% Similarity=0.101 Sum_probs=177.4
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHH-------------HhC
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE-------------SLG 79 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~-------------~~~ 79 (284)
..+.+|.++++|+.+.+++.+ ++.+.+++.||+||.+ ..+.+.+.... ....++ ..+
T Consensus 157 ~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~~-~~f~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T cd03816 157 FGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRPP-EQFRPLPLEEK----HELFLKLAKTFLTRELRIGAVQ 226 (415)
T ss_pred HhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCCH-HHceeCcHHHH----HHHHHhccccccccccccccce
Confidence 346799999999999887543 5678899999999954 33333221110 011111 112
Q ss_pred C-CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEe
Q 023290 80 V-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 158 (284)
Q Consensus 80 ~-~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 158 (284)
+ +++..+++++|++.+.||++.+++|+..+.+..... ..+++++|+|+|+|+ ..+.++++++++++.+.+.+.
T Consensus 227 ~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G~-----~~~~l~~~~~~~~l~~~~~~~ 300 (415)
T cd03816 227 LSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKGP-----LKEKYLERIKELKLKKVTIRT 300 (415)
T ss_pred ecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecCc-----cHHHHHHHHHHcCCCcEEEEc
Confidence 2 234567778999999999999999999886532110 023689999999986 678899999999987544455
Q ss_pred ccc--cCHHHHHhhccEEEEcCCC-CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHH
Q 023290 159 NKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 159 ~~~--~~~~~~~~~ad~~~~ps~~-~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
|+. +++..+|+.||+++.++.. ..+++|++++||||||+|||+++.++..|+++++.+|++++ | +++++++|.
T Consensus 301 g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d--~~~la~~i~ 376 (415)
T cd03816 301 PWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--D--SEELAEQLI 376 (415)
T ss_pred CcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--C--HHHHHHHHH
Confidence 654 8999999999999875331 15789999999999999999999999999999999999984 5 999999999
Q ss_pred HHhhC---HHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 023290 236 KLATH---VERRLTMGKRGYERVKEIFQEHHMAER 267 (284)
Q Consensus 236 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
.+++| ++.+++|++++++..+ ++|+....+
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 99999 9999999999998774 566554444
No 57
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=2e-28 Score=213.07 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=165.3
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG 96 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~ 96 (284)
++.+++.|..+.+. +...+..+ ||+|.++|.+... ...++++++......++|+||+.+.
T Consensus 499 cD~VIaPS~atq~L-----------~~~vI~nV-nGVDte~F~P~~r--------~~~~r~lgi~~~~kgiLfVGRLa~E 558 (794)
T PLN02501 499 CHKVLRLSAATQDL-----------PKSVICNV-HGVNPKFLKIGEK--------VAEERELGQQAFSKGAYFLGKMVWA 558 (794)
T ss_pred CCEEEcCCHHHHHh-----------cccceeec-ccccccccCCcch--------hHHHHhcCCccccCceEEEEccccc
Confidence 78899988665531 22222222 6999998886543 2222556665444557899999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEE
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 176 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ 176 (284)
||++.+++++..+.. +.++++|+|+|+|+ ..+.+++.++++++ +|.|+|..++...+|+.+|++++
T Consensus 559 KGld~LLeAla~L~~-------~~pnvrLvIVGDGP-----~reeLe~la~eLgL--~V~FLG~~dd~~~lyasaDVFVl 624 (794)
T PLN02501 559 KGYRELIDLLAKHKN-------ELDGFNLDVFGNGE-----DAHEVQRAAKRLDL--NLNFLKGRDHADDSLHGYKVFIN 624 (794)
T ss_pred CCHHHHHHHHHHHHh-------hCCCeEEEEEcCCc-----cHHHHHHHHHHcCC--EEEecCCCCCHHHHHHhCCEEEE
Confidence 999999999988765 23789999999987 67889999998887 58999998888899999999999
Q ss_pred cCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 023290 177 NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 256 (284)
Q Consensus 177 ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 256 (284)
||. .|+||++++||||||+|||+++.++. +++.++.+|++. +| +++++++|.+++++++.+..+.+ .
T Consensus 625 PS~--sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~--~D--~EafAeAI~~LLsd~~~rl~~~a------~ 691 (794)
T PLN02501 625 PSI--SDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTY--KT--SEDFVAKVKEALANEPQPLTPEQ------R 691 (794)
T ss_pred CCC--cccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEec--CC--HHHHHHHHHHHHhCchhhhHHHH------H
Confidence 999 99999999999999999999999985 446678888765 45 99999999999998775433321 2
Q ss_pred HhcCHHHHHHHHHHHH
Q 023290 257 EIFQEHHMAERIAVVL 272 (284)
Q Consensus 257 ~~~~~~~~~~~~~~~~ 272 (284)
..+||+.+++++++.-
T Consensus 692 ~~~SWeAaadrLle~~ 707 (794)
T PLN02501 692 YNLSWEAATQRFMEYS 707 (794)
T ss_pred hhCCHHHHHHHHHHhh
Confidence 3699999999998754
No 58
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=1.9e-28 Score=209.60 Aligned_cols=226 Identities=24% Similarity=0.296 Sum_probs=190.7
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..+|.+++.|....+++. ..+.+..++.++|||++...+...... .. +.+.....+.+.++++|
T Consensus 161 ~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G 227 (394)
T cd03794 161 LIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVVLYAG 227 (394)
T ss_pred HHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEEEEec
Confidence 345788999999999888755 256778899999999998766544321 11 34445556788999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+.+ . ++++++++|.+. ..+.+.+.+...+. ++|.++|.. +++..+|+
T Consensus 228 ~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~~-----~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~ 293 (394)
T cd03794 228 NIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDGP-----EKEELKELAKALGL-DNVTFLGRVPKEELPELLA 293 (394)
T ss_pred CcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCcc-----cHHHHHHHHHHcCC-CcEEEeCCCChHHHHHHHH
Confidence 99999999999999998765 2 589999999876 45666666666555 579999976 68999999
Q ss_pred hccEEEEcCCCCcCc-----cchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHH
Q 023290 170 AIDVLVQNSQAWGEC-----FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 244 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~-----~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~ 244 (284)
.||++++|+. .++ +|++++|||++|+|||+++.++..+.+.++.+|++++++| +++++++|.+++.|++.+
T Consensus 294 ~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 294 AADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDDPEER 369 (394)
T ss_pred hhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCC--HHHHHHHHHHHHhChHHH
Confidence 9999999998 554 4788999999999999999999999998888999999988 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHH
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERI 268 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
.++++++++.+.++|+|+.+++++
T Consensus 370 ~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 370 AEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHhc
Confidence 999999999999899999999876
No 59
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=202.04 Aligned_cols=237 Identities=21% Similarity=0.207 Sum_probs=194.3
Q ss_pred CCcccccccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC
Q 023290 4 HYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 83 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 83 (284)
.+++......+...|++||+|...++-. .=+-.+.+.++.+|||.++...|.+.+... -+.+
T Consensus 133 i~~n~ll~~sL~~id~~IcVshtskent----vlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--------------~S~~ 194 (426)
T KOG1111|consen 133 ILTNKLLPLSLANIDRIICVSHTSKENT----VLRGALAPAKVSVIPNAVVTHTFTPDAADK--------------PSAD 194 (426)
T ss_pred hhhcceeeeeecCCCcEEEEeecCCCce----EEEeccCHhHeeeccceeeccccccCcccc--------------CCCC
Confidence 4556667778889999999999876542 112347788999999999999988744321 1234
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 161 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-- 161 (284)
...++.++|+.++||.|.+++++..+++ ++|+++|+|+|+|+ -...+++..+++.+.++|.++|.+
T Consensus 195 i~~ivv~sRLvyrKGiDll~~iIp~vc~-------~~p~vrfii~GDGP-----k~i~lee~lEk~~l~~rV~~lG~v~h 262 (426)
T KOG1111|consen 195 IITIVVASRLVYRKGIDLLLEIIPSVCD-------KHPEVRFIIIGDGP-----KRIDLEEMLEKLFLQDRVVMLGTVPH 262 (426)
T ss_pred eeEEEEEeeeeeccchHHHHHHHHHHHh-------cCCCeeEEEecCCc-----ccchHHHHHHHhhccCceEEecccch
Confidence 4788899999999999999999999987 56999999999998 567788888899999999999987
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+++.+.|..-|+|++||. .|+|+++++|||+||+|||++..||++|++.++ .-++.+++ ++++++++++.+..-
T Consensus 263 ~~Vr~vl~~G~IFlntSl--TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~---~~dl~~~v~~ai~~~ 336 (426)
T KOG1111|consen 263 DRVRDVLVRGDIFLNTSL--TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPG---PDDLVGAVEKAITKL 336 (426)
T ss_pred HHHHHHHhcCcEEeccHH--HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCC---hHHHHHHHHHHHHHh
Confidence 899999999999999999 999999999999999999999999999999665 33444444 888999888887643
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 242 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
... -++..+.+.+.|+|+..+++-+++|.++...+
T Consensus 337 ~~~---p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 337 RTL---PLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred ccC---chhHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 222 23344567778999999999999999988754
No 60
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=1.3e-28 Score=211.20 Aligned_cols=206 Identities=15% Similarity=0.122 Sum_probs=157.2
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc--
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-- 93 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~-- 93 (284)
.++.+|+.|.+.++.+.+ .+ ...++.+||||+|.+.+.+.+.. ...+ .++++++++++|+.
T Consensus 190 ~~~~iV~~S~~l~~~~~~----~~--~~~~i~vI~NGid~~~~~~~~~~-------~~~~----~~~~~~~il~v~~~~~ 252 (405)
T PRK10125 190 LGCQFISPSQHVADAFNS----LY--GPGRCRIINNGIDMATEAILAEL-------PPVR----ETQGKPKIAVVAHDLR 252 (405)
T ss_pred cCcEEEEcCHHHHHHHHH----Hc--CCCCEEEeCCCcCcccccccccc-------cccc----cCCCCCEEEEEEeccc
Confidence 456788889888876443 23 35689999999997533221110 0000 12456778899984
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---cCHHHHHhh
Q 023290 94 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAA 170 (284)
Q Consensus 94 ~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~---~~~~~~~~~ 170 (284)
.+.||++.+++|+..+. ++++|+++|.+.+.. ..++.++|.. .++.++|+.
T Consensus 253 ~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~~----------------~~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 253 YDGKTDQQLVREMMALG----------DKIELHTFGKFSPFT----------------AGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred cCCccHHHHHHHHHhCC----------CCeEEEEEcCCCccc----------------ccceEEecCcCCHHHHHHHHHh
Confidence 36899999999998751 679999999864210 1357777764 568899999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH----
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT---- 246 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~---- 246 (284)
||++++||. +|+||++++||||||+|||+|+.||++|++.++ +|++++++| ++++++++ +++.+.+
T Consensus 307 aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d--~~~La~~~-----~~~~~~~~~~~ 376 (405)
T PRK10125 307 MDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEE--VLQLAQLS-----KPEIAQAVFGT 376 (405)
T ss_pred CCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCC--HHHHHhcc-----CHHHHHHhhhh
Confidence 999999999 999999999999999999999999999999765 899999999 99999854 3333332
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 247 MGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+..++++.+.+.|+++.+++++.++|++
T Consensus 377 ~~~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 377 TLAEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2355788888899999999999999975
No 61
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.96 E-value=2.6e-28 Score=186.25 Aligned_cols=169 Identities=29% Similarity=0.497 Sum_probs=152.3
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC
Q 023290 71 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 150 (284)
Q Consensus 71 ~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 150 (284)
++..+.+.+..+++++|+++|++.+.||++.+++++..+..... ++++++|+|.+. +...+...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~------~~~~l~i~G~~~-----~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKN------PNYKLVIVGDGE-----YKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHH------TTEEEEEESHCC-----HHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcC------CCeEEEEEcccc-----ccccccccccccc
Confidence 46788888998999999999999999999999999999875311 899999999654 7788999999999
Q ss_pred CCCcEEEecccc--CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChH
Q 023290 151 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 228 (284)
Q Consensus 151 ~~~~v~~~~~~~--~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~ 228 (284)
+.+++.+++... ++..+|+.||++++||. .|++|.+++|||++|+|||+++.+++.+++.++.+|+++++.+ ++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~--~~ 146 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPND--IE 146 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTS--HH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeeccccceEEeCCCC--HH
Confidence 999999999975 99999999999999999 8999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023290 229 PLAKNIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 229 ~~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
+++++|.+++.+++.++.|+++++++
T Consensus 147 ~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 147 ELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999874
No 62
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=8.7e-28 Score=203.63 Aligned_cols=214 Identities=22% Similarity=0.269 Sum_probs=177.3
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
..|.+++.|....+.+.+ .+....++.+++||+|...+..... +.+.++++++++|++.+
T Consensus 143 ~~d~ii~~s~~~~~~~~~-----~~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~ 202 (359)
T cd03823 143 GGDAVIAPSRFLLDRYVA-----NGLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTP 202 (359)
T ss_pred CCCEEEEeCHHHHHHHHH-----cCCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCcc
Confidence 338899999988777554 2344578999999999887654321 23456788999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccE
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 173 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~ 173 (284)
.||++.+++++..+.+ ++++|+++|.+... ....... +..++|.++|+. +++..+|+.||+
T Consensus 203 ~k~~~~li~~~~~l~~---------~~~~l~i~G~~~~~-----~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~ 265 (359)
T cd03823 203 HKGVDLLLEAFKRLPR---------GDIELVIVGNGLEL-----EEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDV 265 (359)
T ss_pred ccCHHHHHHHHHHHHh---------cCcEEEEEcCchhh-----hHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCE
Confidence 9999999999998754 68999999987532 2221111 455789999997 899999999999
Q ss_pred EEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 023290 174 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 253 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 253 (284)
+++||.. .|++|++++|||+||+|||+++.++..+++.++.+|++++++| +++++++|.+++++++.++.+++++++
T Consensus 266 ~i~ps~~-~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 266 LVVPSIW-PENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred EEEcCcc-cCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 9999972 6999999999999999999999999999999998999999998 999999999999999999999998887
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 023290 254 RVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~ 273 (284)
.... +.+++++.++|+
T Consensus 343 ~~~~----~~~~~~~~~~~~ 358 (359)
T cd03823 343 PRSI----EDQAEEYLKLYR 358 (359)
T ss_pred hhhH----HHHHHHHHHHhh
Confidence 6543 888888888875
No 63
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.96 E-value=7.4e-28 Score=202.86 Aligned_cols=205 Identities=18% Similarity=0.234 Sum_probs=164.6
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.....+.+++.|+...+.+.. . .++.+||||+|.+.+...+ .++..++++|+
T Consensus 128 ~~~~~~~~~~~s~~~~~~~~~-------~--~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr 179 (335)
T cd03802 128 AARPDVPFVSISDAQRRPWPP-------L--PWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGR 179 (335)
T ss_pred hhCcCCeEEEecHHHHhhccc-------c--cccEEecCCcChhhCCCCC-------------------CCCCEEEEEEe
Confidence 345667788888877665322 1 6899999999988775421 24567889999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC-CCCcEEEeccc--cCHHHHHh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~--~~~~~~~~ 169 (284)
+.+.||++.+++++.+ .+++++++|.+.. ...+.....+.. +.++|.|+|++ +++..+|+
T Consensus 180 ~~~~Kg~~~li~~~~~------------~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~ 242 (335)
T cd03802 180 ISPEKGPHLAIRAARR------------AGIPLKLAGPVSD-----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLG 242 (335)
T ss_pred eccccCHHHHHHHHHh------------cCCeEEEEeCCCC-----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHH
Confidence 9999999999998653 6789999999852 233444444432 45799999997 56789999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.+|++++||. +.|+||++++|||+||+|||+++.++..|++.++.+|+++++ +++++++|..+...+ .+
T Consensus 243 ~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~ 311 (335)
T cd03802 243 NARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RA 311 (335)
T ss_pred hCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HH
Confidence 9999999997 259999999999999999999999999999999999999985 899999999986543 23
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 250 RGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++.+.++|+|+.+++++.++|+
T Consensus 312 ~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 312 ACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 566778899999999999999884
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.96 E-value=7.4e-28 Score=204.34 Aligned_cols=199 Identities=22% Similarity=0.279 Sum_probs=161.7
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|..+.+.+.+. ++ .+..+++||+|.+.+.... .....++++|+
T Consensus 150 ~~~~~d~ii~~S~~~~~~~~~~----~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~ 203 (351)
T cd03804 150 SAARVDYFIANSRFVARRIKKY----YG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGR 203 (351)
T ss_pred HhcCCCEEEECCHHHHHHHHHH----hC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEc
Confidence 3578999999999999887553 22 3468999999987665322 13345789999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhh
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 170 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ 170 (284)
+.+.||++.+++++..+ + ++|+++|+++ ..+.+++ +..++|.|+|++ +++.++|+.
T Consensus 204 ~~~~K~~~~li~a~~~~-----------~-~~l~ivG~g~-----~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 204 LVPYKRIDLAIEAFNKL-----------G-KRLVVIGDGP-----ELDRLRA-----KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred CccccChHHHHHHHHHC-----------C-CcEEEEECCh-----hHHHHHh-----hcCCCEEEecCCCHHHHHHHHHh
Confidence 99999999999999764 5 8899999975 3444444 445799999997 559999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
||++++||. |+||++++|||+||+|||+++.++..+++.++.+|++++++| +++++++|..++++++ .+.++
T Consensus 262 ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~---~~~~~ 333 (351)
T cd03804 262 ARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED---FDPQA 333 (351)
T ss_pred CCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---cCHHH
Confidence 999999984 999999999999999999999999999999999999999988 9999999999999884 22333
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERI 268 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (284)
+++.+. +|+|+.+.+++
T Consensus 334 ~~~~~~-~~~~~~~~~~~ 350 (351)
T cd03804 334 IRAHAE-RFSESRFREKI 350 (351)
T ss_pred HHHHHH-hcCHHHHHHHh
Confidence 444443 59999988775
No 65
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.96 E-value=4.5e-27 Score=203.23 Aligned_cols=247 Identities=17% Similarity=0.113 Sum_probs=183.1
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcc-----------cCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCC
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV 80 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-----------~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (284)
+.+-.+|.+-+.+...++.+...+.+.+|. ...++.++|||+|++.|.+.............+|++++
T Consensus 179 ~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~- 257 (456)
T TIGR02400 179 EGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK- 257 (456)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC-
Confidence 344457878888887777766645444443 34568899999999988764433222222345677763
Q ss_pred CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc--------CCC
Q 023290 81 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK--------KIQ 152 (284)
Q Consensus 81 ~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~--------~~~ 152 (284)
++.+|+++||+.+.||++.+++|+.++.+..++. ..++.|+++|.+.....+....+++.++++ +..
T Consensus 258 --~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~---~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~ 332 (456)
T TIGR02400 258 --GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEW---RGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTL 332 (456)
T ss_pred --CCeEEEEccccccccCHHHHHHHHHHHHHhCccc---cCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCC
Confidence 6678889999999999999999999987643211 024678888654323223445555555543 111
Q ss_pred C--cEEEec-c--ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC----EEEcCCCCcceeeecCCceeeecCC
Q 023290 153 D--RVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 153 ~--~v~~~~-~--~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P----vi~~~~~~~~e~v~~~~~g~~~~~~ 223 (284)
+ .+.+++ . .+++.++|+.||++++||. .||||++++||||||+| +|+|+.+|..+.+. +|+++++.
T Consensus 333 ~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~ 407 (456)
T TIGR02400 333 DWTPIRYLNRSYDREELMALYRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPY 407 (456)
T ss_pred CCccEEEEcCCCCHHHHHHHHHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCC
Confidence 1 144544 3 3799999999999999999 99999999999999999 99999888877773 69999999
Q ss_pred CCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 224 KEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
| +++++++|.++++ +++++++..++.++.+. .|++..+++++++-+
T Consensus 408 d--~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~-~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 408 D--IDGMADAIARALTMPLEEREERHRAMMDKLR-KNDVQRWREDFLSDL 454 (456)
T ss_pred C--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHh
Confidence 9 9999999999998 67888888899999876 499999999988655
No 66
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=3.8e-27 Score=201.63 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=161.9
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC--CeEEEEecccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVS 94 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~i~~~g~~~ 94 (284)
+|.+++.|..+.++ . ..+.+..+|+|.+++.+.... .++.++ .++ ...++|+||+.
T Consensus 181 ~d~vi~pS~~~~~l-~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~~~~-~~~~~~~~~l~vGRL~ 238 (462)
T PLN02846 181 CHKVIRLSAATQDY-P-----------RSIICNVHGVNPKFLEIGKLK---------LEQQKN-GEQAFTKGAYYIGKMV 238 (462)
T ss_pred cCEEEccCHHHHHH-h-----------hCEEecCceechhhcCCCccc---------HhhhcC-CCCCcceEEEEEecCc
Confidence 78888888755442 1 124444589999988754321 222222 233 24688999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEE
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 174 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~ 174 (284)
+.||++.+++++..+.. ..++++|+|+|+|+ ..+.+++.++++++...+ |.|. .+..++|..+|++
T Consensus 239 ~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdGp-----~~~~L~~~a~~l~l~~~v-f~G~-~~~~~~~~~~DvF 304 (462)
T PLN02846 239 WSKGYKELLKLLHKHQK-------ELSGLEVDLYGSGE-----DSDEVKAAAEKLELDVRV-YPGR-DHADPLFHDYKVF 304 (462)
T ss_pred ccCCHHHHHHHHHHHHh-------hCCCeEEEEECCCc-----cHHHHHHHHHhcCCcEEE-ECCC-CCHHHHHHhCCEE
Confidence 99999999999998765 23789999999997 678899999999876444 6665 4666899999999
Q ss_pred EEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023290 175 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 175 ~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
++||. .|+||++++||||||+|||+++.++ .+++.++.+|+.++ | .+++++++..++.++. ..+..+++
T Consensus 305 v~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~--~~~~a~ai~~~l~~~~--~~~~~~a~-- 373 (462)
T PLN02846 305 LNPST--TDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--D--GKGFVRATLKALAEEP--APLTDAQR-- 373 (462)
T ss_pred EECCC--cccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--C--HHHHHHHHHHHHccCc--hhHHHHHH--
Confidence 99999 9999999999999999999999997 59999999998884 4 8999999999998532 22222222
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 023290 255 VKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~ 273 (284)
+.|||+..++++.++++
T Consensus 374 --~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 374 --HELSWEAATERFLRVAD 390 (462)
T ss_pred --HhCCHHHHHHHHHHHhc
Confidence 47999999999999986
No 67
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.95 E-value=7e-26 Score=195.00 Aligned_cols=256 Identities=18% Similarity=0.185 Sum_probs=175.0
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhh-----HH----HHHHHHHHHHhCCCCC
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----AK----RVLREHVRESLGVRNE 83 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----~~----~~~~~~~r~~~~~~~~ 83 (284)
....+|.++++|+.++.... ..++.++++ |||||+++..+....... .+ ...+..++..++++++
T Consensus 223 aa~~Ad~fttVS~it~~E~~----~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d 296 (590)
T cd03793 223 AAHCAHVFTTVSEITAYEAE----HLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLD 296 (590)
T ss_pred HHhhCCEEEECChHHHHHHH----HHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCC
Confidence 34578999999999888744 447777776 999999999886543211 01 1113446777888777
Q ss_pred CeEEEE-eccccc-cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC-------hHHH---------------
Q 023290 84 DLLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-------TKFE--------------- 139 (284)
Q Consensus 84 ~~~i~~-~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~-------~~~~--------------- 139 (284)
+.+++| +||+.. .||++.+|+|+.++...++..+.+..=+-|+++-...... ....
T Consensus 297 ~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~ 376 (590)
T cd03793 297 KTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIG 376 (590)
T ss_pred CeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhh
Confidence 766666 799998 9999999999999998887754222223344443321100 0011
Q ss_pred ----------------------------------------------------HHHHHHHHHcCCC----Cc--EEEecc-
Q 023290 140 ----------------------------------------------------SELRNYVMQKKIQ----DR--VHFVNK- 160 (284)
Q Consensus 140 ----------------------------------------------------~~l~~~~~~~~~~----~~--v~~~~~- 160 (284)
+.+...+++.++. ++ |.|++.
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~ 456 (590)
T cd03793 377 KRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEF 456 (590)
T ss_pred hhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccc
Confidence 1111122222221 22 445442
Q ss_pred ------c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc----eeeecC-CceeeecCCC---
Q 023290 161 ------T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT----EIVVNG-TTGLLHPVGK--- 224 (284)
Q Consensus 161 ------~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~----e~v~~~-~~g~~~~~~d--- 224 (284)
. .+..++|+.||++++||. +|+||++++|||+||+|||+|+.+++. |.+.++ ..|+++.+.+
T Consensus 457 L~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~ 534 (590)
T cd03793 457 LSSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKS 534 (590)
T ss_pred cCCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccc
Confidence 1 457889999999999999 999999999999999999999999884 444443 3577766321
Q ss_pred --CChHHHHHHHHHHhhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 225 --EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 225 --~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
.++++++++|.++++. +.++.+..+++ +...+.|+|+..+..|.+.+.-++.
T Consensus 535 ~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 535 PDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 1388899999998854 45555655544 3455689999999999999988775
No 68
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=3.6e-26 Score=199.10 Aligned_cols=246 Identities=17% Similarity=0.091 Sum_probs=176.9
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhccc------------CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCC
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIK------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV 80 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~------------~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (284)
.+-.+|.+.+.+......+.+.+...++.. ..++.++|||+|++.+........ .+..+++..+.
T Consensus 184 ~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~---~~~~~~~~~~~ 260 (460)
T cd03788 184 GLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPE---VQERAAELRER 260 (460)
T ss_pred HHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCch---hHHHHHHHHHh
Confidence 334567777777665555444343333322 246889999999988875432211 12233344445
Q ss_pred CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC----hHHHHHHHHHHHHcCCC----
Q 023290 81 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQKKIQ---- 152 (284)
Q Consensus 81 ~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~~~~~---- 152 (284)
.+++++|+++||+.+.||++.+++|+.++.+..++. ..+++|+++|.+.... .++.+.+++++.+.+..
T Consensus 261 ~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~---~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~ 337 (460)
T cd03788 261 LGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEW---RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL 337 (460)
T ss_pred cCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhh---cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 567888999999999999999999999887643221 0247888887653222 22445555555443321
Q ss_pred --CcEEEe-cc--ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC----EEEcCCCCcceeeecCCceeeecCC
Q 023290 153 --DRVHFV-NK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 153 --~~v~~~-~~--~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P----vi~~~~~~~~e~v~~~~~g~~~~~~ 223 (284)
..|.++ |. .+++..+|+.||++++||. .||||++++|||+||+| ||+++.+|..+. +.+|+++++.
T Consensus 338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~ 412 (460)
T cd03788 338 DWTPVRYLYRSLPREELAALYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPY 412 (460)
T ss_pred CceeEEEEeCCCCHHHHHHHHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCC
Confidence 235554 54 3899999999999999999 99999999999999999 999988887665 4679999999
Q ss_pred CCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 224 KEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
| +++++++|.+++++ +++++.+.+++++.+. .|+++.+++++.+-+
T Consensus 413 d--~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 D--IDEVADAIHRALTMPLEERRERHRKLREYVR-THDVQAWANSFLDDL 459 (460)
T ss_pred C--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHhh
Confidence 8 99999999999984 5788888888888875 699999999887643
No 69
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.94 E-value=3.9e-26 Score=192.79 Aligned_cols=255 Identities=33% Similarity=0.401 Sum_probs=199.1
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
...++.+++.+..++.-++..+.. +...++.+++.++|.+.+.+..-. .+...+...|...+....+..+..+.++
T Consensus 207 ~~~~~~~~~ns~~~~~~f~~~~~~---L~~~d~~~~y~ei~~s~~~~~~~~-~~~~~~~~~r~~~~v~~~d~~~~siN~~ 282 (495)
T KOG0853|consen 207 TGLAWKILVNSYFTKRQFKATFVS---LSNSDITSTYPEIDGSWFTYGQYE-SHLELRLPVRLYRGVSGIDRFFPSINRF 282 (495)
T ss_pred hhccceEecchhhhhhhhhhhhhh---cCCCCcceeeccccchhccccccc-cchhcccccceeeeecccceEeeeeeec
Confidence 446778888888888877765433 445558889989987765531110 1111234445566777667788889999
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecC-----CCCChHHHHHHHHHHHHcCC-CCcEEEeccccCH--H
Q 023290 94 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI-QDRVHFVNKTLTV--A 165 (284)
Q Consensus 94 ~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~-----~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~~~~~--~ 165 (284)
.+.|++..+++++..+....++. +.++.+++++|+. .++..++.+++.++++++++ .+.+.|+....+. .
T Consensus 283 ~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~y 360 (495)
T KOG0853|consen 283 EPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKY 360 (495)
T ss_pred CCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHH
Confidence 99999999999999988766542 4478889999943 33445588899999999988 4677887776444 4
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
.+++.+.++++... .|.||++++|||+||+|||++++||..|++.++.+|++++++...+..+++++.++..|++.+.
T Consensus 361 rl~adt~~v~~qPa--~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~ 438 (495)
T KOG0853|consen 361 RLAADTKGVLYQPA--NEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWA 438 (495)
T ss_pred HHHHhcceEEecCC--CCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 45566666666665 7999999999999999999999999999999999999999964333379999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
+|++++++++.+.|+|+.+.+++.+++....
T Consensus 439 ~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 439 RMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 9999999999999999999999999887554
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.94 E-value=2.4e-25 Score=193.50 Aligned_cols=235 Identities=17% Similarity=0.141 Sum_probs=173.9
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|+...+.+.+ +|.+.+ +.+++|. +.+........ .....++++++ +++.+++++
T Consensus 173 r~~~~~~d~ii~~S~~~~~~l~~-----~g~~~~-i~vi~n~-~~d~~~~~~~~----~~~~~~r~~~~--~~~~vil~~ 239 (425)
T PRK05749 173 RLLFKNIDLVLAQSEEDAERFLA-----LGAKNE-VTVTGNL-KFDIEVPPELA----ARAATLRRQLA--PNRPVWIAA 239 (425)
T ss_pred HHHHHhCCEEEECCHHHHHHHHH-----cCCCCC-cEecccc-cccCCCChhhH----HHHHHHHHHhc--CCCcEEEEe
Confidence 34566789999999999887554 567666 8889885 22222111110 11355677776 355667777
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-------------cEEE
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-------------RVHF 157 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-------------~v~~ 157 (284)
|+. .|+.+.+++|+..+.+ .+++++|+|+|+++. ..+.+++.+++.|+.. .|.+
T Consensus 240 ~~~--~~~~~~ll~A~~~l~~-------~~~~~~liivG~g~~----r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l 306 (425)
T PRK05749 240 STH--EGEEELVLDAHRALLK-------QFPNLLLILVPRHPE----RFKEVEELLKKAGLSYVRRSQGEPPSADTDVLL 306 (425)
T ss_pred CCC--chHHHHHHHHHHHHHH-------hCCCcEEEEcCCChh----hHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEE
Confidence 753 5788999999988765 338999999998751 2367888888888742 3444
Q ss_pred eccccCHHHHHhhccEEEE-cCCCCcCccchhHHHHHhcCCCEEEcCC-CCcceeeecC-CceeeecCCCCChHHHHHHH
Q 023290 158 VNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNI 234 (284)
Q Consensus 158 ~~~~~~~~~~~~~ad~~~~-ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~~~e~v~~~-~~g~~~~~~d~~~~~~~~~i 234 (284)
.+...++..+|+.||++++ +|. .|++|.+++|||+||+|||+++. ++..+.++.. .+|.++.++| +++++++|
T Consensus 307 ~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l 382 (425)
T PRK05749 307 GDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAV 382 (425)
T ss_pred EecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHH
Confidence 4445689999999999666 565 68899999999999999999765 5556655442 4688888888 99999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 235 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
..+++|++.+++|++++++.+.++ ....+++.+++.+.+.+
T Consensus 383 ~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 383 TYLLTDPDARQAYGEAGVAFLKQN---QGALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHhccc
Confidence 999999999999999999988764 36667777877776654
No 71
>PLN02275 transferase, transferring glycosyl groups
Probab=99.94 E-value=2.6e-25 Score=189.66 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=150.7
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.++.+|.++++|+...+.+.+ .+|.+ +.+|+|+. .+.+.+.... .... .+...+++++|+
T Consensus 162 ~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~~~~~i~~~gr 221 (371)
T PLN02275 162 YGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PNRPALVVSSTS 221 (371)
T ss_pred HHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CCCcEEEEEeCc
Confidence 356789999999999888544 24443 88999985 3444332110 0111 124456778999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhc----------cCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec-c-
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K- 160 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~----------~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-~- 160 (284)
+.+.||++.+++|+..+..++.... ...++++|+++|+|+ ..+.+++.++++++.+ +.|.+ +
T Consensus 222 l~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~-----~~~~l~~~~~~~~l~~-v~~~~~~~ 295 (371)
T PLN02275 222 WTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP-----QKAMYEEKISRLNLRH-VAFRTMWL 295 (371)
T ss_pred eeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC-----CHHHHHHHHHHcCCCc-eEEEcCCC
Confidence 9999999999999988753321100 023789999999987 6789999999999975 77765 3
Q ss_pred -ccCHHHHHhhccEEEEcCC-CCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 161 -TLTVAPYLAAIDVLVQNSQ-AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 161 -~~~~~~~~~~ad~~~~ps~-~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.+++..+|+.||++++|+. .+.+++|++++||||||+|||+++.++..|+++++.+|++++ + +++++++|.+++
T Consensus 296 ~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 296 EAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred CHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 3899999999999998642 125889999999999999999999999999999999999997 4 899999998764
No 72
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.94 E-value=1.4e-24 Score=198.61 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=189.0
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhccc-----------CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHh
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 78 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-----------~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (284)
+.+.+-.+|.|-+.+...++.+.+.+.+.++.. ..++.++|||+|++.+...............+++.+
T Consensus 197 il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~ 276 (797)
T PLN03063 197 LLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF 276 (797)
T ss_pred HHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc
Confidence 334455778788888887777766555444432 246889999999987765432221122223555555
Q ss_pred CCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC--CCCc--
Q 023290 79 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK--IQDR-- 154 (284)
Q Consensus 79 ~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~--~~~~-- 154 (284)
+ ++.+|+++||+.+.||++.+++|+.++.+..++. ..++.|++++.+........+.+++.++++. +...
T Consensus 277 ~---~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~---~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g 350 (797)
T PLN03063 277 A---GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEW---RDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFG 350 (797)
T ss_pred C---CCeEEEEecccccccCHHHHHHHHHHHHHhCccc---cCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccc
Confidence 4 5677889999999999999999999987643221 0234556555433223335566666666653 3221
Q ss_pred ------EEEec-cc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC----EEEcCCCCcceeeecCCceeeec
Q 023290 155 ------VHFVN-KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 155 ------v~~~~-~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P----vi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
|++++ .. +++..+|+.||++++||. .||||++++||||||+| +|+|..+|..+.+ +.+|++++
T Consensus 351 ~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVn 426 (797)
T PLN03063 351 SVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVN 426 (797)
T ss_pred cCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEEC
Confidence 33443 22 789999999999999999 99999999999999999 9999999888876 55799999
Q ss_pred CCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 222 VGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
|.| +++++++|.+++. +++++++..++.++.+. .++|...++.+++.+.++..+
T Consensus 427 P~D--~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~-~~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 427 PWN--ITEVSSAIKEALNMSDEERETRHRHNFQYVK-THSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred CCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-hCCHHHHHHHHHHHHHHHhhh
Confidence 999 9999999999999 78888888888888886 599999999999999887654
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.93 E-value=8.4e-24 Score=181.10 Aligned_cols=229 Identities=13% Similarity=0.099 Sum_probs=167.5
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
..+..+.+|.+++.|....+.+.+ .|++.+++.+++++++.++...... +..+|+++|++++.+++++
T Consensus 144 ~~w~~~~~d~~~~~s~~~~~~l~~-----~g~~~~ki~v~g~~v~~~f~~~~~~-------~~~~r~~~gl~~~~~~il~ 211 (382)
T PLN02605 144 PTWFHKGVTRCFCPSEEVAKRALK-----RGLEPSQIRVYGLPIRPSFARAVRP-------KDELRRELGMDEDLPAVLL 211 (382)
T ss_pred cccccCCCCEEEECCHHHHHHHHH-----cCCCHHHEEEECcccCHhhccCCCC-------HHHHHHHcCCCCCCcEEEE
Confidence 345567899999999888776443 5888899999999998766543221 3668899999988899999
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeE-EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~-l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (284)
+|+....|++..+++++..+...... ..++.+ ++++|.+. ...+.+++. ....+|.++|+++++.++|
T Consensus 212 ~Gg~~g~~~~~~li~~l~~~~~~~~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~ 280 (382)
T PLN02605 212 MGGGEGMGPLEETARALGDSLYDKNL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWM 280 (382)
T ss_pred ECCCcccccHHHHHHHHHHhhccccc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHH
Confidence 99988889999999988764310000 015565 56667542 133444433 2234799999999999999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-----CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC-HH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VE 242 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-----~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~-~~ 242 (284)
+.||+++.++ .|++++|||+||+|+|+++.. +..+++.+++.|+.+ .| +++++++|.+++.+ ++
T Consensus 281 ~aaDv~V~~~------g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~--~~--~~~la~~i~~ll~~~~~ 350 (382)
T PLN02605 281 GACDCIITKA------GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS--ES--PKEIARIVAEWFGDKSD 350 (382)
T ss_pred HhCCEEEECC------CcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec--CC--HHHHHHHHHHHHcCCHH
Confidence 9999999754 278999999999999999842 222334455566654 55 99999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 243 RRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.+++|++++++... ..+.+.+++.+.+..
T Consensus 351 ~~~~m~~~~~~~~~-~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 351 ELEAMSENALKLAR-PEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHh
Confidence 99999999988664 466677776665543
No 74
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.91 E-value=3e-23 Score=190.10 Aligned_cols=253 Identities=16% Similarity=0.119 Sum_probs=179.5
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcc-----------cCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 79 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-----------~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 79 (284)
.+.+-.+|.+-+.+....+.+.+.+.+.++. ...++.++|+|+|++.+.+.............+|+.+
T Consensus 184 l~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~- 262 (726)
T PRK14501 184 LEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL- 262 (726)
T ss_pred HHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc-
Confidence 3444466767777777666666655554442 1235789999999998876543222222234455554
Q ss_pred CCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC----hHHHHHHHHHHHHcC----C
Q 023290 80 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQKK----I 151 (284)
Q Consensus 80 ~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~~~----~ 151 (284)
+++.+|+++||+.+.||+..+++|+.++.+..++. ..+++|+++|.+.... .++...+.+++.+.+ .
T Consensus 263 --~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~---~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~ 337 (726)
T PRK14501 263 --RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEW---RGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGT 337 (726)
T ss_pred --CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccc---cCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35678889999999999999999999987643211 1247899887543222 123333444433322 1
Q ss_pred ---CCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhc-----CCCEEEcCCCCcceeeecCCceeeec
Q 023290 152 ---QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF-----QLPVLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 152 ---~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-----G~Pvi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
..-+.+.+.. +++..+|+.||++++||. .||||++++|||+| |.||++...|+..++. .|++++
T Consensus 338 ~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~ 411 (726)
T PRK14501 338 VDWTPIHYFYRSLPFEELVALYRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVN 411 (726)
T ss_pred CCcceEEEEeCCCCHHHHHHHHHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEEC
Confidence 1123455543 899999999999999999 99999999999999 5577777778887775 389999
Q ss_pred CCCCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 222 VGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
|.| +++++++|.+++.+ .+++.....++++.+. .|+|+.+++++++.|.++..+
T Consensus 412 P~d--~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 412 PND--IEGIAAAIKRALEMPEEEQRERMQAMQERLR-RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred CCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 999 99999999999985 4556666677888875 699999999999999988654
No 75
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=3.4e-22 Score=171.50 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=167.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCe-EEEEe
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAII 90 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~ 90 (284)
+..+.+|.+++.|+...+.+.+ .|++.+++.+++++++..+..... +...++++|++++.. ++++.
T Consensus 143 w~~~~~d~~~v~s~~~~~~l~~-----~gi~~~ki~v~GiPv~~~f~~~~~--------~~~~~~~~~l~~~~~~ilv~~ 209 (391)
T PRK13608 143 WITPYSTRYYVATKETKQDFID-----VGIDPSTVKVTGIPIDNKFETPID--------QKQWLIDNNLDPDKQTILMSA 209 (391)
T ss_pred cccCCCCEEEECCHHHHHHHHH-----cCCCHHHEEEECeecChHhccccc--------HHHHHHHcCCCCCCCEEEEEC
Confidence 3457899999999888777543 478888999988888765543221 245677889876654 55678
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
|++...|+++.+++++.+ ..++++++++++... ...+.+++ ..+..++|.++|+++++.++|+.
T Consensus 210 G~lg~~k~~~~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~~---~~~~~~~v~~~G~~~~~~~~~~~ 273 (391)
T PRK13608 210 GAFGVSKGFDTMITDILA----------KSANAQVVMICGKSK---ELKRSLTA---KFKSNENVLILGYTKHMNEWMAS 273 (391)
T ss_pred CCcccchhHHHHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHHH---HhccCCCeEEEeccchHHHHHHh
Confidence 999888999999987532 126788876654321 12233333 33344589999999999999999
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-CC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
||+++..+ .|+++.|||++|+|+|+++. ++ +..++.+.+.|+.. .+ +++++++|.++++|++.++
T Consensus 274 aDl~I~k~------gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~--~~--~~~l~~~i~~ll~~~~~~~ 343 (391)
T PRK13608 274 SQLMITKP------GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIA--DT--PEEAIKIVASLTNGNEQLT 343 (391)
T ss_pred hhEEEeCC------chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEe--CC--HHHHHHHHHHHhcCHHHHH
Confidence 99999532 47899999999999999863 33 12233344455543 35 8999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
+|++++++... .++++.+++.+.+++..+...+
T Consensus 344 ~m~~~~~~~~~-~~s~~~i~~~l~~l~~~~~~~~ 376 (391)
T PRK13608 344 NMISTMEQDKI-KYATQTICRDLLDLIGHSSQPQ 376 (391)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHhhhhhhhh
Confidence 99999998765 5999999999999987665544
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=4.2e-22 Score=170.82 Aligned_cols=225 Identities=9% Similarity=0.049 Sum_probs=167.5
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCC-eEEEE
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAI 89 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~ 89 (284)
....+.+|.+++.|+...+.+.+ .|++.+++.+++++++..+..... +..++++++++++. +++++
T Consensus 142 ~~~~~~ad~i~~~s~~~~~~l~~-----~gi~~~ki~v~G~p~~~~f~~~~~--------~~~~~~~~~l~~~~~~il~~ 208 (380)
T PRK13609 142 IWVHREVDRYFVATDHVKKVLVD-----IGVPPEQVVETGIPIRSSFELKIN--------PDIIYNKYQLCPNKKILLIM 208 (380)
T ss_pred ccccCCCCEEEECCHHHHHHHHH-----cCCChhHEEEECcccChHHcCcCC--------HHHHHHHcCCCCCCcEEEEE
Confidence 34567899999999988776544 578888898887777654332211 24468889998654 45666
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
.|+....|++..+++++... ++++++++|++.. ...+.+++.++..+ ++|+++|+.+++.++|+
T Consensus 209 ~G~~~~~k~~~~li~~l~~~-----------~~~~~viv~G~~~---~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 209 AGAHGVLGNVKELCQSLMSV-----------PDLQVVVVCGKNE---ALKQSLEDLQETNP--DALKVFGYVENIDELFR 272 (380)
T ss_pred cCCCCCCcCHHHHHHHHhhC-----------CCcEEEEEeCCCH---HHHHHHHHHHhcCC--CcEEEEechhhHHHHHH
Confidence 78888889998888876431 6789887754321 24567777776654 58999999989999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-CCCcc----eeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 244 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-~~~~~----e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~ 244 (284)
.||+++. ++.|++++|||++|+|+|+++ .++.. +++. .+|..+...| +++++++|.++++|++.+
T Consensus 273 ~aD~~v~------~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~ 342 (380)
T PRK13609 273 VTSCMIT------KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKL 342 (380)
T ss_pred hccEEEe------CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHH
Confidence 9999884 224789999999999999976 44421 2332 2355455566 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
++|++++++... .++++.+++.+.+++...
T Consensus 343 ~~m~~~~~~~~~-~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 343 LQMKEAMKSLYL-PEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHHHHhCC-CchHHHHHHHHHHhhhhh
Confidence 999999887554 589999999998887654
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.90 E-value=6.5e-23 Score=175.13 Aligned_cols=219 Identities=16% Similarity=0.067 Sum_probs=150.3
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+.+++ ++ +++++++||+|.+.|........ ..+.. ...++++++|+
T Consensus 148 ~~~~~~ad~vi~~S~~l~~~~~~-----~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~--~~~~~~~i~y~ 211 (373)
T cd04950 148 RRLLKRADLVFTTSPSLYEAKRR-----LN---PNVVLVPNGVDYEHFAAARDPPP------PPADL--AALPRPVIGYY 211 (373)
T ss_pred HHHHHhCCEEEECCHHHHHHHhh-----CC---CCEEEcccccCHHHhhcccccCC------ChhHH--hcCCCCEEEEE
Confidence 35567899999999988876544 22 68999999999987765332110 00111 12356789999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.+.++.+.+.++... .++++|+++|.+... .... .+...++|+++|.+ +++..+|
T Consensus 212 G~l~~~~d~~ll~~la~~-----------~p~~~~vliG~~~~~-----~~~~----~~~~~~nV~~~G~~~~~~l~~~l 271 (373)
T cd04950 212 GAIAEWLDLELLEALAKA-----------RPDWSFVLIGPVDVS-----IDPS----ALLRLPNVHYLGPKPYKELPAYL 271 (373)
T ss_pred eccccccCHHHHHHHHHH-----------CCCCEEEEECCCcCc-----cChh----HhccCCCEEEeCCCCHHHHHHHH
Confidence 999997777655443321 289999999987211 1111 11113589999987 7899999
Q ss_pred hhccEEEEcCCC---CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 169 AAIDVLVQNSQA---WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 169 ~~ad~~~~ps~~---~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
+.||++++|+.. ..+++|++++||||||+|||+++.++..+. ...++++ ++| +++++++|.+++.++...+
T Consensus 272 ~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~---~~~~~~~-~~d--~~~~~~ai~~~l~~~~~~~ 345 (373)
T cd04950 272 AGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRY---EDEVVLI-ADD--PEEFVAAIEKALLEDGPAR 345 (373)
T ss_pred HhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhh---cCcEEEe-CCC--HHHHHHHHHHHHhcCCchH
Confidence 999999999862 134679999999999999999987655443 3334444 455 9999999999766432211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
.. ++++ +.+.+||+..++++.+.+.+
T Consensus 346 ~~--~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 346 ER--RRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HH--HHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 11 2222 45679999999999966653
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.6e-21 Score=167.24 Aligned_cols=250 Identities=20% Similarity=0.171 Sum_probs=198.5
Q ss_pred cccccCCcccccccchhhHHHHHHH-----HHHHhcccCCCeEEEecCCccccchhhhhhh-----------HHHHHHHH
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREH 73 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~-----------~~~~~~~~ 73 (284)
+...+..+|.+.++|...++.+... +...+.....+++-|-||+|.+.+.+..+.. .+...+..
T Consensus 202 lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~ 281 (487)
T COG0297 202 LKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVA 281 (487)
T ss_pred hhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHH
Confidence 3456678999999999887775510 0011112235788999999999887765531 26667889
Q ss_pred HHHHhCCCC--CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC
Q 023290 74 VRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 151 (284)
Q Consensus 74 ~r~~~~~~~--~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 151 (284)
+++++|++. +.+++.++||+..+||++.+++++..+.+ ...+++++|.+.+ .+.+.+..+.+++..
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~---------~~~~~vilG~gd~---~le~~~~~la~~~~~ 349 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLE---------QGWQLVLLGTGDP---ELEEALRALASRHPG 349 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHH---------hCceEEEEecCcH---HHHHHHHHHHHhcCc
Confidence 999999983 56899999999999999999999999887 5699999999843 377888888887653
Q ss_pred CCcEEE-eccccC-HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec--------CCceeeec
Q 023290 152 QDRVHF-VNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--------GTTGLLHP 221 (284)
Q Consensus 152 ~~~v~~-~~~~~~-~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--------~~~g~~~~ 221 (284)
++.+ ++..+. ...+|+.||++++||+ +|+||++-++||.+|+++|+..+||..+.|.+ ..+|+++.
T Consensus 350 --~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~ 425 (487)
T COG0297 350 --RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFL 425 (487)
T ss_pred --eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEe
Confidence 4443 444433 4567899999999999 99999999999999999999999999998875 47899999
Q ss_pred CCCCChHHHHHHHHHHhh---CHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 222 VGKEGITPLAKNIVKLAT---HVER-RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
+.+ +++++.+|.+.+. .++. .+.+..++.. ..|+|+..+.++.++|+.+++...
T Consensus 426 ~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 426 QTN--PDHLANALRRALVLYRAPPLLWRKVQPNAMG---ADFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred cCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---cccCchhHHHHHHHHHHHHhcccc
Confidence 987 9999999998765 4444 6777666655 679999999999999999987653
No 79
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.88 E-value=1.5e-20 Score=162.02 Aligned_cols=248 Identities=14% Similarity=0.093 Sum_probs=182.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccC--------------------------------CCeEEEecCCccccch
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM--------------------------------PDTYVVHLGNSKELME 59 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~--------------------------------~~i~vi~~g~~~~~~~ 59 (284)
+.+-.+|.+=+.+...++.+.+-+.+.+|... -++.++|.|+|++.+.
T Consensus 184 ~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~ 263 (487)
T TIGR02398 184 GSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIR 263 (487)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHH
Confidence 33445666666777666666654444433221 1268899999999886
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCCh---
Q 023290 60 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT--- 136 (284)
Q Consensus 60 ~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~--- 136 (284)
..............+|++++ ++.+|+.++|+++.||+...++|+.++++..++. ..+++|+++|.+.....
T Consensus 264 ~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~---~gkv~Lvqi~~psr~~v~~y 337 (487)
T TIGR02398 264 SALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPEL---LGKVTLVTACVPAASGMTIY 337 (487)
T ss_pred HHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccc---cCceEEEEEeCCCcccchHH
Confidence 65433333333567888887 5678889999999999999999999998754332 13579999988654332
Q ss_pred -HHHHHHHHHHHHc-------CCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC----CEEEc
Q 023290 137 -KFESELRNYVMQK-------KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGT 202 (284)
Q Consensus 137 -~~~~~l~~~~~~~-------~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~----Pvi~~ 202 (284)
++..++++++.+. +..+-+.+.+.. +++..+|+.||+++.+|. .+|++++..||++|+. |+|.|
T Consensus 338 ~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLILS 415 (487)
T TIGR02398 338 DELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLVLS 415 (487)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEEEe
Confidence 2445555555553 334446666664 789999999999999999 9999999999999988 99999
Q ss_pred CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 203 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 203 ~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
..+|..+.+ ..+++++|.| +++++++|.+.++. .+++++..+..++.+. .++....++.+++-+.
T Consensus 416 efaGaa~~l---~~AllVNP~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~-~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 416 EFAGAAVEL---KGALLTNPYD--PVRMDETIYVALAMPKAEQQARMREMFDAVN-YYDVQRWADEFLAAVS 481 (487)
T ss_pred ccccchhhc---CCCEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHhh
Confidence 999887665 3589999999 99999999999994 4566666666677665 5888888888776553
No 80
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=9.3e-20 Score=153.46 Aligned_cols=225 Identities=28% Similarity=0.392 Sum_probs=176.1
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCC--eEEEEecccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED--LLFAIINSVS 94 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~i~~~g~~~ 94 (284)
.+.++..+......++.. ....++.+++++++.+.+... ..++.++. ..++++|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~ 209 (381)
T COG0438 151 ADRVIAVSPALKELLEAL------GVPNKIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLD 209 (381)
T ss_pred ccEEEECCHHHHHHHHHh------CCCCCceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccC
Confidence 444555555543333322 222368899999998866532 11122233 6888999999
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc--CHHHHHhhcc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAID 172 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~--~~~~~~~~ad 172 (284)
+.||++.+++++..+... .+++.++++|.+... ...+...+...+..+++.++|... ++..+++.||
T Consensus 210 ~~k~~~~~i~~~~~~~~~-------~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 210 PEKGLDLLIEAAAKLKKR-------GPDIKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred hhcCHHHHHHHHHHhhhh-------cCCeEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 999999999999988652 244899999997632 345666777777777899999864 7788899999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
++++||. .|++|++++|||++|+|||+++.++..+.+.++.+|+++...+ ++++++++..++++.+.++.+...++
T Consensus 279 ~~v~ps~--~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~ 354 (381)
T COG0438 279 VFVLPSL--SEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAAR 354 (381)
T ss_pred EEEeccc--cccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999998 7999999999999999999999999999998877788777666 89999999999999888888887666
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 253 ERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+.+...|+|+.++..+.+++.....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 355 ERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 6676889999999999999987764
No 81
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=6.7e-21 Score=162.06 Aligned_cols=214 Identities=15% Similarity=0.098 Sum_probs=159.4
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
.+.+|.+++.+... +.+ .+..++++++||++.+.+.... .+.+++++++.++++++|+.
T Consensus 134 ~~~~d~ii~~~~~~-------~~~---~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~ 192 (357)
T PRK00726 134 ARFAKKVATAFPGA-------FPE---FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGS 192 (357)
T ss_pred HHHhchheECchhh-------hhc---cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCc
Confidence 45677777766522 111 5678999999999987654211 12345666677777888887
Q ss_pred cccccHHHHH-HHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhcc
Q 023290 94 SRGKGQDLFL-HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 94 ~~~k~~~~~~-~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad 172 (284)
...++...++ +|+.++.. ....++++|.+. .+.+.+..+ +++. |.+.|+.+++..+|+.||
T Consensus 193 ~~~~~~~~~l~~a~~~~~~---------~~~~~~~~G~g~------~~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d 254 (357)
T PRK00726 193 QGARVLNEAVPEALALLPE---------ALQVIHQTGKGD------LEEVRAAYA-AGIN--AEVVPFIDDMAAAYAAAD 254 (357)
T ss_pred HhHHHHHHHHHHHHHHhhh---------CcEEEEEcCCCc------HHHHHHHhh-cCCc--EEEeehHhhHHHHHHhCC
Confidence 7777765555 78776632 225567788874 244444445 6663 999999989999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC--------cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 244 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~--------~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~ 244 (284)
++++++- +++++|||++|+|+|++..++ ..+.+.+..+|+++++.|.++++++++|.++++|++.+
T Consensus 255 ~~i~~~g------~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 328 (357)
T PRK00726 255 LVICRAG------ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERL 328 (357)
T ss_pred EEEECCC------HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHH
Confidence 9997652 689999999999999987642 12456677889999887655899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++|++++++.. +.++.+.+++.+.++++
T Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 329 EAMAEAARALG-KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHhcC-CcCHHHHHHHHHHHHhh
Confidence 99999998876 46888888888877654
No 82
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.86 E-value=8.7e-21 Score=160.98 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=153.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
.+.+|.+++.|+...++ .+..++.+++||++.+.+... .. +++++++++.+++++.|+.
T Consensus 132 ~~~~~~vi~~s~~~~~~----------~~~~~~~~i~n~v~~~~~~~~----------~~-~~~~~~~~~~~~i~~~~g~ 190 (350)
T cd03785 132 ARFADRVALSFPETAKY----------FPKDKAVVTGNPVREEILALD----------RE-RARLGLRPGKPTLLVFGGS 190 (350)
T ss_pred HHhhCEEEEcchhhhhc----------CCCCcEEEECCCCchHHhhhh----------hh-HHhcCCCCCCeEEEEECCc
Confidence 34578888888766553 456789999999998765432 11 6777887778777777776
Q ss_pred cccccHHH-HHHHHHHHHHHHHhhccCCCCeEE-EEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 94 SRGKGQDL-FLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 94 ~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
...|+... +++++..+.+ +++++ +++|.+ ..+.+++.++++ .++|.+.|+.+++.++|+.|
T Consensus 191 ~~~~~~~~~l~~a~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~a 253 (350)
T cd03785 191 QGARAINEAVPEALAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAA 253 (350)
T ss_pred HhHHHHHHHHHHHHHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhc
Confidence 66666654 4577766642 45664 466765 245667777665 46899999999999999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC--------cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 243 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~--------~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~ 243 (284)
|++++++- +++++|||++|+|+|+++.++ ..+.+.+..+|+++++.+.++++++++|..++++++.
T Consensus 254 d~~v~~sg------~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~ 327 (350)
T cd03785 254 DLVISRAG------ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPER 327 (350)
T ss_pred CEEEECCC------HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHH
Confidence 99997552 578999999999999987543 2355666778999998622299999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHH
Q 023290 244 RLTMGKRGYERVKEIFQEHHMA 265 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (284)
++.|++++++.+. .+..++++
T Consensus 328 ~~~~~~~~~~~~~-~~~~~~i~ 348 (350)
T cd03785 328 LKAMAEAARSLAR-PDAAERIA 348 (350)
T ss_pred HHHHHHHHHhcCC-CCHHHHHH
Confidence 9999999987664 45555544
No 83
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.86 E-value=1.4e-20 Score=159.65 Aligned_cols=205 Identities=14% Similarity=0.121 Sum_probs=147.8
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
.+.+|.+++.|+...+++ +..+++||++...+.... .++.++++++.++++++|+.
T Consensus 133 ~~~~d~ii~~~~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~ 188 (348)
T TIGR01133 133 SRFAKKVLISFPGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGS 188 (348)
T ss_pred HHHhCeeEECchhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCc
Confidence 456788888887665542 247899999876543221 12356777788888899877
Q ss_pred cccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhcc
Q 023290 94 SRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 94 ~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad 172 (284)
...|++.. +++++..+.. .++++++++++. ..+.+++.++++++.+.+.|. .. ++.++|+.||
T Consensus 189 ~~~~~~~~~l~~a~~~l~~---------~~~~~~~~~g~~-----~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad 252 (348)
T TIGR01133 189 QGAKILNELVPKALAKLAE---------KGIQIVHQTGKN-----DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAAD 252 (348)
T ss_pred hhHHHHHHHHHHHHHHHhh---------cCcEEEEECCcc-----hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCC
Confidence 77777654 4467766543 445665444332 336778888888775555665 33 8999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC-------cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~-------~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
+++.++ | +++++|||++|+|+|+++.++ ..+++.++.+|++++++|.++++++++|.++++|++.++
T Consensus 253 ~~v~~~-----g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 326 (348)
T TIGR01133 253 LVISRA-----G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLE 326 (348)
T ss_pred EEEECC-----C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHH
Confidence 999754 1 689999999999999987654 235777888999998875459999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHH
Q 023290 246 TMGKRGYERVKEIFQEHHMA 265 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~ 265 (284)
+|++++++.+.+ ...+.++
T Consensus 327 ~~~~~~~~~~~~-~~~~~i~ 345 (348)
T TIGR01133 327 AMAEAARKLAKP-DAAKRIA 345 (348)
T ss_pred HHHHHHHhcCCc-cHHHHHH
Confidence 999999876543 4444433
No 84
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.84 E-value=4.1e-19 Score=141.40 Aligned_cols=237 Identities=20% Similarity=0.213 Sum_probs=183.9
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCC-CCCCeEEEE
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV-RNEDLLFAI 89 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~ 89 (284)
...=..+|.++++|.++.+++++- ++. -...+++.+.+.+..+. ..+- ..+.+.+++
T Consensus 217 ~~~G~~ad~vm~NssWT~nHI~qi----W~~--~~~~iVyPPC~~e~lks----------------~~~te~~r~~~ll~ 274 (465)
T KOG1387|consen 217 QSAGSKADIVMTNSSWTNNHIKQI----WQS--NTCSIVYPPCSTEDLKS----------------KFGTEGERENQLLS 274 (465)
T ss_pred HhccccceEEEecchhhHHHHHHH----hhc--cceeEEcCCCCHHHHHH----------------HhcccCCcceEEEE
Confidence 344457889999999999987663 323 45677887887764332 2222 345688899
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCC-CCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAP 166 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~ 166 (284)
+|++.|.|++. +++.+.....+.+.. ...++++|+++|+-. .++.+..+.++.++.++.++.+|.|.-.+ +++..
T Consensus 275 l~Q~RPEKnH~-~Lql~Al~~~~~pl~-a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~ 352 (465)
T KOG1387|consen 275 LAQFRPEKNHK-ILQLFALYLKNEPLE-ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVE 352 (465)
T ss_pred EeecCcccccH-HHHHHHHHHhcCchh-hccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHH
Confidence 99999999999 666555443332221 133789999999843 34556788899999999999999997765 89999
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc-eeeec---CCceeeecCCCCChHHHHHHHHHHhh-CH
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HV 241 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~-e~v~~---~~~g~~~~~~d~~~~~~~~~i~~l~~-~~ 241 (284)
+++.|.+.+.... .|.||+.+.||||.|+-+|+.+.||.. +++.+ ..+|++.+. .++.+++|.+++. ++
T Consensus 353 lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t----~~EYaE~iLkIv~~~~ 426 (465)
T KOG1387|consen 353 LLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPT----DEEYAEAILKIVKLNY 426 (465)
T ss_pred Hhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCC----hHHHHHHHHHHHHcCH
Confidence 9999999998886 999999999999999999999988764 44433 357888853 6899999999998 78
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 242 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
+.+-.+..+||..+. +|+...+.+.+...+.+++.+
T Consensus 427 ~~r~~~r~~AR~s~~-RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 427 DERNMMRRNARKSLA-RFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHhHhHHHHHhhcc
Confidence 888889999988775 699999999999999988865
No 85
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.82 E-value=3.4e-18 Score=149.89 Aligned_cols=219 Identities=12% Similarity=0.128 Sum_probs=168.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..+..++.+|+.+....+.++..+.+. -...++..||.+.- ... ...+ ......+++++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~--~~~~~v~~Ip~~~~-~~~-~~~s-----------------~r~~~~~I~v~ 326 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYREN--YVEFDISRITPFDT-RLR-LGQS-----------------QQLYETEIGFW 326 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhc--ccCCcceeeCccce-EEe-cChh-----------------hcccceEEEEE
Confidence 456678888888877666655443221 01234566774432 221 1110 01223455677
Q ss_pred --cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-----------------
Q 023290 92 --SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ----------------- 152 (284)
Q Consensus 92 --~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~----------------- 152 (284)
|+ +.|.++.+++++.++.. +.|+++|.+.|.+... ...+.+++.+++++..
T Consensus 327 idrL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 327 IDGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNNDN--DITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred cCCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCch--hHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 99 99999999999999877 4499999999987431 2456666666666555
Q ss_pred ------------CcEEEecccc--CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCcee
Q 023290 153 ------------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL 218 (284)
Q Consensus 153 ------------~~v~~~~~~~--~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~ 218 (284)
++|.|.|... ++.+.|+.+.++|.+|. .+|++ +.+||++.|+|+| .-+..++|.++.||+
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~ 470 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGY 470 (519)
T ss_pred hcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcE
Confidence 6899999875 99999999999999999 99999 9999999999999 556689999999999
Q ss_pred eecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 219 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++ +| .++++++|..++.+++.+.++...+++.+. +||.+.+.++|.+++
T Consensus 471 li--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~~-~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 471 II--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLID-DYSSENIIERLNELI 519 (519)
T ss_pred Ee--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhhC
Confidence 99 45 999999999999999999999999999885 699999999998753
No 86
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.81 E-value=6.9e-20 Score=133.98 Aligned_cols=133 Identities=26% Similarity=0.347 Sum_probs=96.3
Q ss_pred CeEEEEeccccccccHHHHHH-HHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 84 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~-a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
-++++++|++.+.|+++.+++ ++.++.+ +.|+++|+|+|.++. .++++ ..++|.++|+++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~~-------~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGPD-------ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCHH-------HHHHh-----cCCCEEEcCCHH
Confidence 467899999999999999999 9988876 348999999999652 24433 124899999988
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
++.++++.||+++.|+.. .++++++++|||++|+|||+++. +..+++.....|+++ .++ +++++++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 899999999999999863 56899999999999999999998 566776656667777 666 99999999999875
No 87
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.80 E-value=6.2e-18 Score=154.86 Aligned_cols=253 Identities=14% Similarity=0.116 Sum_probs=181.2
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhccc-----------CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCC
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV 80 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~-----------~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (284)
+.+-.+|.|=+.+...+..+.+.+.+.+|.. ..++.++|.|+|++.+...............++++++
T Consensus 283 ~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~- 361 (934)
T PLN03064 283 RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA- 361 (934)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC-
Confidence 3344677777777777777666555544432 1235678999999888765444333334567788776
Q ss_pred CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHH----HHHHHHHc----CCC
Q 023290 81 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE----LRNYVMQK----KIQ 152 (284)
Q Consensus 81 ~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~----l~~~~~~~----~~~ 152 (284)
++.+|+.++|+++.||+...+.|+.++++..++. ..++.|+.+..+........+. +.+++.+. |-.
T Consensus 362 --g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~---r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~ 436 (934)
T PLN03064 362 --GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEW---RDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTL 436 (934)
T ss_pred --CceEEEEeeccccccCHHHHHHHHHHHHHhCccc---cCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCC
Confidence 5668889999999999999999999988755432 1235555555433322123333 33333332 211
Q ss_pred C--cEEEecc-c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC----CEEEcCCCCcceeeecCCceeeecCC
Q 023290 153 D--RVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 153 ~--~v~~~~~-~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~----Pvi~~~~~~~~e~v~~~~~g~~~~~~ 223 (284)
+ -|+++.. . +++.++|+.||+++.||. .||++++..|||+|+. ++|.|...|..+.+ +..+++++|.
T Consensus 437 ~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~ 512 (934)
T PLN03064 437 TAVPIHHLDRSLDFHALCALYAVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPW 512 (934)
T ss_pred CcceEEEeccCCCHHHHHHHHHhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCC
Confidence 1 1444443 2 789999999999999999 9999999999999944 44448877777766 4468999999
Q ss_pred CCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 224 KEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
| +++++++|.+.+. ++++++...++.++.+. .+++..+++.+++-+.....
T Consensus 513 D--~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~-~~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 513 N--ITEVAASIAQALNMPEEEREKRHRHNFMHVT-THTAQEWAETFVSELNDTVV 564 (934)
T ss_pred C--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999998 88899999999999886 59999999998888877654
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.77 E-value=2.8e-17 Score=140.23 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=139.1
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc-c
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-S 94 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~-~ 94 (284)
.+|.+++.|....+.+.+ .|.+++++.+++|++........... ....++++++. ++.++++..++. .
T Consensus 141 ~ad~~~~~s~~~~~~l~~-----~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~ 209 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLR-----ENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRREN 209 (365)
T ss_pred HHHhccCCCHHHHHHHHH-----cCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhh
Confidence 468888888888776443 48888899999999743322211110 02445666763 233444333343 2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhcc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 172 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad 172 (284)
..|+++.+++++.++.+ ..+++++++.|.+.+. .... +.+.++..++|.+++.. .++..+++.||
T Consensus 210 ~~k~~~~ll~a~~~l~~-------~~~~~~~vi~~~~~~~---~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad 276 (365)
T TIGR00236 210 VGEPLENIFKAIREIVE-------EFEDVQIVYPVHLNPV---VREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSH 276 (365)
T ss_pred hhhHHHHHHHHHHHHHH-------HCCCCEEEEECCCChH---HHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCC
Confidence 35889999999988764 2378888888654321 2222 33334556689999875 56788999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
+++.+| |..++|||++|+|||++ +.++..+.+.++ .+++++ .| ++++++++.+++++++.+++++.+.
T Consensus 277 ~vv~~S-------g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 277 LILTDS-------GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred EEEECC-------hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcC
Confidence 999776 34579999999999996 667777887655 455664 45 9999999999999998888887654
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.76 E-value=7.1e-17 Score=138.56 Aligned_cols=222 Identities=17% Similarity=0.176 Sum_probs=147.5
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEE-EEecc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS 92 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~~g~ 92 (284)
.+.+|.+++.+....+++.+ .|. ++.++.|++....... .. +...+++++++++.+++ ++.|+
T Consensus 132 ~~~~d~i~~~~~~~~~~~~~-----~g~---~~~~~G~p~~~~~~~~-~~-------~~~~~~~l~~~~~~~~il~~~gs 195 (380)
T PRK00025 132 AKATDHVLALFPFEAAFYDK-----LGV---PVTFVGHPLADAIPLL-PD-------RAAARARLGLDPDARVLALLPGS 195 (380)
T ss_pred HHHHhhheeCCccCHHHHHh-----cCC---CeEEECcCHHHhcccc-cC-------hHHHHHHcCCCCCCCEEEEECCC
Confidence 45678888888877776543 233 2666666654322111 11 35577889987766654 44453
Q ss_pred c-ccc-ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc-CCCCcEEEeccccCHHHHHh
Q 023290 93 V-SRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 93 ~-~~~-k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 169 (284)
- ... +..+.+++++..+.+ +.++++++++|+++ +..+.+++..++. ++. +.+.. .++..+|+
T Consensus 196 r~~~~~~~~~~l~~a~~~l~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~ 260 (380)
T PRK00025 196 RGQEIKRLLPPFLKAAQLLQQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMA 260 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHH
Confidence 2 222 346778888877754 23788999988633 2456677777766 553 55544 58999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-----------------CCCCcceeeecCC--ceeeecCCCCChHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-----------------AAGGTTEIVVNGT--TGLLHPVGKEGITPL 230 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-----------------~~~~~~e~v~~~~--~g~~~~~~d~~~~~~ 230 (284)
.||+++++| |.+.+|||++|+|+|++ +.+++.+++.++. .+++.+..+ ++++
T Consensus 261 ~aDl~v~~s-------G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l 331 (380)
T PRK00025 261 AADAALAAS-------GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKL 331 (380)
T ss_pred hCCEEEECc-------cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHH
Confidence 999999987 56778999999999976 2334445554443 345555555 9999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 231 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 231 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
++.+.++++|++.+++|++++.+.... . ....++++.+.+.+++.
T Consensus 332 ~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 332 ARALLPLLADGARRQALLEGFTELHQQ-L-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHH-h-CCCHHHHHHHHHHHHhh
Confidence 999999999999999999987655443 2 22355666666665554
No 90
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.76 E-value=1.8e-17 Score=139.33 Aligned_cols=196 Identities=10% Similarity=0.060 Sum_probs=139.7
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|..+.+++++ .|++..++.++++..+....... . ..+..+.++|+
T Consensus 118 ~~~~~~aD~iI~~S~~~~~~l~~-----~g~~~~~i~~~~~~~~~~~~~~~--------------~---~~~~~~~i~ya 175 (333)
T PRK09814 118 IDMLNLADVLIVHSKKMKDRLVE-----EGLTTDKIIVQGIFDYLNDIELV--------------K---TPSFQKKINFA 175 (333)
T ss_pred HHHHHhCCEEEECCHHHHHHHHH-----cCCCcCceEeccccccccccccc--------------c---cccCCceEEEe
Confidence 45677899999999999998654 46766778777655433211100 0 01245688999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++...++ +. . ..++++|+++|.++.. . ...++|.|+|+. +++..+|
T Consensus 176 G~l~k~~~----l~---~----------~~~~~~l~i~G~g~~~-----~---------~~~~~V~f~G~~~~eel~~~l 224 (333)
T PRK09814 176 GNLEKSPF----LK---N----------WSQGIKLTVFGPNPED-----L---------ENSANISYKGWFDPEELPNEL 224 (333)
T ss_pred cChhhchH----HH---h----------cCCCCeEEEECCCccc-----c---------ccCCCeEEecCCCHHHHHHHH
Confidence 99984321 11 1 1167999999988621 1 234689999986 7888888
Q ss_pred hhccEEEEcCCC---------CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 169 AAIDVLVQNSQA---------WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 169 ~~ad~~~~ps~~---------~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+. |+.+.+... ..-++|.++.||||+|+|||+++.++..++++++.+|++++ + .++++++|..+
T Consensus 225 ~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~-- 297 (333)
T PRK09814 225 SK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI-- 297 (333)
T ss_pred hc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--
Confidence 87 766654320 02357889999999999999999999999999999999998 3 78999999885
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 023290 240 HVERRLTMGKRGYERVKEIFQEHHMAER 267 (284)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
+++.+.+|++++++.... +..-.++++
T Consensus 298 ~~~~~~~m~~n~~~~~~~-~~~g~~~~~ 324 (333)
T PRK09814 298 TEEEYQEMVENVKKISKL-LRNGYFTKK 324 (333)
T ss_pred CHHHHHHHHHHHHHHHHH-HhcchhHHH
Confidence 457788999999987654 444444443
No 91
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.75 E-value=2.7e-17 Score=140.32 Aligned_cols=214 Identities=19% Similarity=0.159 Sum_probs=148.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCC-ccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.+.+|.+++.+....+++.+ .|.+.+++.+++|++ |...+...... ....++.++++++.+++++.|+
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~-----~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r 207 (363)
T cd03786 139 DKLSDLHFAPTEEARRNLLQ-----EGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHR 207 (363)
T ss_pred HHHhhhccCCCHHHHHHHHH-----cCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCC
Confidence 35678888888888776543 588889999999996 33222111110 1223457788777777778888
Q ss_pred ccc---cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC-CCcEEEeccc--cCHHH
Q 023290 93 VSR---GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAP 166 (284)
Q Consensus 93 ~~~---~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~~--~~~~~ 166 (284)
... .|+++.+++++..+.. .++.+++.|.+. ....+++.+.+++. .++|.|++.. .++..
T Consensus 208 ~~~~~~~k~~~~l~~al~~l~~---------~~~~vi~~~~~~-----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 273 (363)
T cd03786 208 VENVDDGEQLEEILEALAELAE---------EDVPVVFPNHPR-----TRPRIREAGLEFLGHHPNVLLISPLGYLYFLL 273 (363)
T ss_pred ccccCChHHHHHHHHHHHHHHh---------cCCEEEEECCCC-----hHHHHHHHHHhhccCCCCEEEECCcCHHHHHH
Confidence 764 7999999999987743 346666666543 56778888777765 5689998764 68899
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-CcceeeecCCceeeecCC-CCChHHHHHHHHHHhhCHHHH
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERR 244 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~~~~~~ 244 (284)
+|+.||+++.+|. + ...|||++|+|+|+++.. ...+.+++ |..+..+ + +++++++|.++++++..+
T Consensus 274 l~~~ad~~v~~Sg------g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~~--~~~i~~~i~~ll~~~~~~ 341 (363)
T cd03786 274 LLKNADLVLTDSG------G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGTD--PEAILAAIEKLLSDEFAY 341 (363)
T ss_pred HHHcCcEEEEcCc------c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCCC--HHHHHHHHHHHhcCchhh
Confidence 9999999999883 3 578999999999998743 34455543 4433333 4 899999999999998777
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERIAVV 271 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
..|. ...|.-...++++.++
T Consensus 342 ~~~~-------~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 342 SLMS-------INPYGDGNASERIVEI 361 (363)
T ss_pred hcCC-------CCCCCCCHHHHHHHHH
Confidence 6653 2234444445555444
No 92
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.75 E-value=6.9e-16 Score=137.12 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=183.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHh----cccCCCeEEEecCCccccchhhhhhh----------------------
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERL----RIKMPDTYVVHLGNSKELMEVAEDNV---------------------- 65 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~----~~~~~~i~vi~~g~~~~~~~~~~~~~---------------------- 65 (284)
..+..++.+-++|...++..+. +...+ .....++.-|-||+|...+.+.....
T Consensus 258 lai~~S~~vngVS~lh~~v~~~-l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~ 336 (601)
T TIGR02094 258 LALRLSRIANGVSKLHGEVSRK-MWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEA 336 (601)
T ss_pred HHHHhCCeeeeecHHHHHHHHH-HHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhh
Confidence 3455778888899888875443 33322 22233588899999998776543211
Q ss_pred -----------HHHHHHHHHHH----HhC-------------------CCCCCeEEEEeccccccccHHHHHHHHHHHHH
Q 023290 66 -----------AKRVLREHVRE----SLG-------------------VRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 111 (284)
Q Consensus 66 -----------~~~~~~~~~r~----~~~-------------------~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~ 111 (284)
.+...+..+.+ +.+ ++++.+++++++|+..+||.++++.++.++.+
T Consensus 337 ~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~ 416 (601)
T TIGR02094 337 IDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLAR 416 (601)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHH
Confidence 12222223322 222 45677899999999999999999999988875
Q ss_pred HHHhhccCCCCeEEEEEecCCCCC---hHHHHHHHHHHHHcCCCCcEEEeccc-cCHH-HHHhhccEEEE-cCCCCcCcc
Q 023290 112 LIKEKKLEVPSVHAVIIGSDMNAQ---TKFESELRNYVMQKKIQDRVHFVNKT-LTVA-PYLAAIDVLVQ-NSQAWGECF 185 (284)
Q Consensus 112 ~~~~~~~~~~~~~l~i~G~~~~~~---~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~ad~~~~-ps~~~~e~~ 185 (284)
.+... ..+++|++.|.+.+.+ .++.+.+..++++...+++|.|+... ..+. .+++.||++++ ||+. .|++
T Consensus 417 i~~~~---~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~Eac 492 (601)
T TIGR02094 417 ILNNP---ERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRP-LEAS 492 (601)
T ss_pred HhhCC---CCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCC-cCCc
Confidence 43211 1479999999987653 22556666666665567788887654 4443 46799999999 8875 8999
Q ss_pred chhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecC------------CCCChHHHHHHHHHHh-----hC-----HHH
Q 023290 186 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV------------GKEGITPLAKNIVKLA-----TH-----VER 243 (284)
Q Consensus 186 ~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~------------~d~~~~~~~~~i~~l~-----~~-----~~~ 243 (284)
|++-+-||..|.+.+++-.|...|.. ++.||+.+.. .| .+++.++|++.+ ++ |..
T Consensus 493 GtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~ 569 (601)
T TIGR02094 493 GTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLD--AEALYDLLENEVIPLYYDRDEKGIPAD 569 (601)
T ss_pred hHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCC--HHHHHHHHHHHHHHHHhcCCcccCcHH
Confidence 99999999999999999988888887 6789999984 44 899999997655 23 556
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 244 RLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
+.++.+++.+.....|||+.++++|.+.|
T Consensus 570 W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 570 WVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 78888888776655799999999999876
No 93
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.73 E-value=8.3e-17 Score=127.76 Aligned_cols=118 Identities=36% Similarity=0.485 Sum_probs=100.0
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---cCHH
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVA 165 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~---~~~~ 165 (284)
++|++.+.||++.+++++..+.+ +.++++++++|.+.. .......+...+..++|.++++. +++.
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~G~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIAGDGPE-----REYLEELLAALLLLDRVIFLGGLDPEELLA 176 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEEeCCCC-----hHHHHHHHHhcCCcccEEEeCCCCcHHHHH
Confidence 89999999999999999999865 337999999999763 33444435666777899999984 5556
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeee
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 220 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~ 220 (284)
.+++.||++++|+. .|++|++++|||++|+|+|+++.++..+++.++.+|+++
T Consensus 177 ~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 177 LLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 66666999999999 899999999999999999999999999999999899864
No 94
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.65 E-value=3.8e-14 Score=128.41 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=150.9
Q ss_pred CCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH---HHHHHHHHHHHcCCCCcEE
Q 023290 80 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 156 (284)
Q Consensus 80 ~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~---~~~~l~~~~~~~~~~~~v~ 156 (284)
++++.++++|+.|+..+|+.++++..+.++.+.+.+. ..+++|++.|.+.|.+.. +.+.+.+++++...+++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4567789999999999999999999998887655331 146999999998776643 4445555566556677888
Q ss_pred Eeccc-cCHH-HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCC----------
Q 023290 157 FVNKT-LTVA-PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK---------- 224 (284)
Q Consensus 157 ~~~~~-~~~~-~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d---------- 224 (284)
|+... ..+. .+++.||+.++||+.-.|.+|++-+-||..|.+-+++-.|...|.. ++.||+.+....
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~ 629 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDA 629 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcch
Confidence 87764 4443 5679999999999877899999999999999999999999999987 889999998822
Q ss_pred CChHHHHHHHHHHhh----C------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHH
Q 023290 225 EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAV-VLKEV 275 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (284)
.+.+++.+.|++-+- + |..+.+|.+++...+...|||+.++++|.+ +|..+
T Consensus 630 ~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 630 EEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 137777788865332 2 677888988888888789999999999776 55443
No 95
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.64 E-value=1.6e-15 Score=103.04 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.2
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
+++.|+. ..+++..++|+||||+|+|+.+.+++.+++.++..++.++ + ++++.++|..+++|++++++++++++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3577887 7889999999999999999999999999999998999988 4 99999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 023290 253 ERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ 270 (284)
+.+.++|+|+..++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999998863
No 96
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.62 E-value=8.1e-14 Score=120.40 Aligned_cols=259 Identities=19% Similarity=0.222 Sum_probs=150.0
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhh-----hHHHHHHHHHHHHh-C---CC-CC
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-----VAKRVLREHVRESL-G---VR-NE 83 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~-----~~~~~~~~~~r~~~-~---~~-~~ 83 (284)
...+|.+-++|+.++...+.. ++. ..=.|+|||++.+++...... ..+....+-++..+ | ++ ++
T Consensus 219 A~~AdvFTTVSeITa~Ea~~L----L~r--~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~ 292 (633)
T PF05693_consen 219 AHYADVFTTVSEITAKEAEHL----LKR--KPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDK 292 (633)
T ss_dssp HHHSSEEEESSHHHHHHHHHH----HSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGG
T ss_pred HHhcCeeeehhhhHHHHHHHH----hCC--CCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccc
Confidence 346888889999888765543 223 234678999998876654221 11222222233332 2 33 45
Q ss_pred CeEEEEeccccc-cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC----------------------------
Q 023290 84 DLLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------------------------- 134 (284)
Q Consensus 84 ~~~i~~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~---------------------------- 134 (284)
.++|...||.+. .||++.+|+|+.+|...++..+.+..=+.|+++-.....
T Consensus 293 tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~ 372 (633)
T PF05693_consen 293 TLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGK 372 (633)
T ss_dssp EEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 678888999985 799999999999999888765422222334444322110
Q ss_pred ----------------------------------------------ChHHHHHHHHHHHHcCCC----Cc--EEEecc--
Q 023290 135 ----------------------------------------------QTKFESELRNYVMQKKIQ----DR--VHFVNK-- 160 (284)
Q Consensus 135 ----------------------------------------------~~~~~~~l~~~~~~~~~~----~~--v~~~~~-- 160 (284)
.....+.+...+++.++. ++ |+|++.
T Consensus 373 ~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL 452 (633)
T PF05693_consen 373 RLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYL 452 (633)
T ss_dssp HHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S--
T ss_pred HHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccc
Confidence 000122333334444332 23 555542
Q ss_pred -----c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec-----CCcee-eecCCCCC-
Q 023290 161 -----T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-----GTTGL-LHPVGKEG- 226 (284)
Q Consensus 161 -----~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~-----~~~g~-~~~~~d~~- 226 (284)
. -++.+++..||+.+.||+ +|++|.+.+|+.++|+|.|+|+..|+..++.+ ...|+ +++-.+.+
T Consensus 453 ~~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~ 530 (633)
T PF05693_consen 453 SGTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNY 530 (633)
T ss_dssp -TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-H
T ss_pred cCCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCH
Confidence 1 578899999999999999 99999999999999999999999988776653 23455 34444433
Q ss_pred ---hHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcC
Q 023290 227 ---ITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 281 (284)
Q Consensus 227 ---~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (284)
++++++.|..+.. +...+..+..++ +.+.+..+|+.+...|.+.+.-++.+..+
T Consensus 531 ~e~v~~la~~l~~f~~~~~rqri~~Rn~a-e~LS~~~dW~~~~~yY~~Ay~~AL~~a~p 588 (633)
T PF05693_consen 531 DESVNQLADFLYKFCQLSRRQRIIQRNRA-ERLSDLADWKNFGKYYEKAYDLALRRAYP 588 (633)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHH-HHHGGGGBHHHHCHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence 4455555555555 455555555555 45667899999999999999988877543
No 97
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.6e-13 Score=108.70 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=142.5
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec-c
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-~ 160 (284)
+...+++...++.+..++..+++|+....++.-..+...|.+..+|.|.|+ .++.+.+.++++++. +|.+.- +
T Consensus 253 ~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP-----lkE~Y~~~I~~~~~~-~v~~~tpW 326 (444)
T KOG2941|consen 253 ERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP-----LKEKYSQEIHEKNLQ-HVQVCTPW 326 (444)
T ss_pred CCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc-----hhHHHHHHHHHhccc-ceeeeecc
Confidence 344566677788899999999999987766666666677888888889887 789999999998876 565543 3
Q ss_pred --ccCHHHHHhhccEEEE--cCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHH
Q 023290 161 --TLTVAPYLAAIDVLVQ--NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 161 --~~~~~~~~~~ad~~~~--ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
.+|++.+++.||+.++ +|.+ +-..|++++....||+||++-+...+.|+|+++.||+++.. -+++++.+..
T Consensus 327 L~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~D----s~eLa~ql~~ 401 (444)
T KOG2941|consen 327 LEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFED----SEELAEQLQM 401 (444)
T ss_pred cccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEecc----HHHHHHHHHH
Confidence 3899999999999775 3432 44578999999999999999999999999999999999984 7899999999
Q ss_pred Hhh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 237 LAT----HVERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 237 l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
+.+ +.+...++.+++++.. ...|+..-++..
T Consensus 402 lf~~fp~~a~~l~~lkkn~~e~~--e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 402 LFKNFPDNADELNQLKKNLREEQ--ELRWDESWERTA 436 (444)
T ss_pred HHhcCCCCHHHHHHHHHhhHHHH--hhhHHHHHHHhh
Confidence 998 8889999998888863 466766555443
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.61 E-value=3.2e-13 Score=117.09 Aligned_cols=250 Identities=18% Similarity=0.129 Sum_probs=158.0
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhccc--CC-----------CeEEEecCCccccchhhhhhhHHHHHHHHHHHHh
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIK--MP-----------DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 78 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~--~~-----------~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (284)
+.+-.+|.+-+.+...++.+...+.+.+|.. .. ++.+.|-|+|++.+...............+++++
T Consensus 193 ~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~ 272 (474)
T PF00982_consen 193 RGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKF 272 (474)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHT
T ss_pred HHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhc
Confidence 4444677777788877777766565655432 12 2677888999987765444333333456777877
Q ss_pred CCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH----HHHHHHHHHHH----cC
Q 023290 79 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KK 150 (284)
Q Consensus 79 ~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~----~~ 150 (284)
+ .+..+|+.+.|++..||+..-+.|+.++.+..++.. .++.|+-++.......+ +..++.+++.+ +|
T Consensus 273 ~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~---~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g 347 (474)
T PF00982_consen 273 K--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYR---GKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYG 347 (474)
T ss_dssp T--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGT---TTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-
T ss_pred C--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCcc---CcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 5 335778899999999999999999999999888753 67888888875444333 34444444443 33
Q ss_pred CCC--cEEEecc-c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC----EEEcCCCCcceeeecCCceeeec
Q 023290 151 IQD--RVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 151 ~~~--~v~~~~~-~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P----vi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
-.+ -|.++.. . +++.++|+.||+++.+|. .+|+.++..|+.+|..+ +|.|...|..+.+.+ .+++++
T Consensus 348 ~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VN 423 (474)
T PF00982_consen 348 TPDWTPIIYIYRSLSFEELLALYRAADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVN 423 (474)
T ss_dssp BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-
T ss_pred cCCceeEEEEecCCCHHHHHHHHHhhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEEC
Confidence 222 2555554 2 789999999999999999 99999999999999665 667777777777633 359999
Q ss_pred CCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 222 VGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
|.| ++++|++|.+.+. .+++++...+..++.+. .++....++.+++-++
T Consensus 424 P~d--~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~-~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 424 PWD--IEEVADAIHEALTMPPEERKERHARLREYVR-EHDVQWWAESFLRDLK 473 (474)
T ss_dssp TT---HHHHHHHHHHHHT--HHHHHHHHHHHHHHHH-HT-HHHHHHHHHHHHH
T ss_pred CCC--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhH-hCCHHHHHHHHHHHhh
Confidence 999 9999999999999 56677777777777775 5898888888877664
No 99
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.60 E-value=1.2e-13 Score=118.12 Aligned_cols=212 Identities=14% Similarity=0.068 Sum_probs=136.3
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE-ec
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI-IN 91 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~-~g 91 (284)
..+.+|.+++.+....+++.+ .| .+..++.|++-.......+. +...|+++|++++.++|++ .|
T Consensus 135 l~~~~d~v~~~~~~e~~~~~~-----~g---~~~~~vGnPv~~~~~~~~~~-------~~~~r~~lgl~~~~~~Ilvl~G 199 (385)
T TIGR00215 135 IEKATDFLLAILPFEKAFYQK-----KN---VPCRFVGHPLLDAIPLYKPD-------RKSAREKLGIDHNGETLALLPG 199 (385)
T ss_pred HHHHHhHhhccCCCcHHHHHh-----cC---CCEEEECCchhhhccccCCC-------HHHHHHHcCCCCCCCEEEEECC
Confidence 345788888888888777543 22 24667788774332211011 3556788999877766654 44
Q ss_pred -cccc-cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 92 -SVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 92 -~~~~-~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
|..+ .|++..+++++..+.+ ..+++++++.+.+.. ....+++..+.++....|.+.+. ++..+|+
T Consensus 200 SR~aei~k~~~~ll~a~~~l~~-------~~p~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~ 266 (385)
T TIGR00215 200 SRGSEVEKLFPLFLKAAQLLEQ-------QEPDLRRVLPVVNFK----RRLQFEQIKAEYGPDLQLHLIDG--DARKAMF 266 (385)
T ss_pred CCHHHHHHhHHHHHHHHHHHHH-------hCCCeEEEEEeCCch----hHHHHHHHHHHhCCCCcEEEECc--hHHHHHH
Confidence 4444 5788888888887755 337888877654321 34556666666655556666543 6778999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-CCC----------------cceeeecCCceeeecCCCCChHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGG----------------TTEIVVNGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-~~~----------------~~e~v~~~~~g~~~~~~d~~~~~~~~ 232 (284)
.||++|++| |.+.+|+|++|+|+|... ... +..++.+......+..++.+++.+++
T Consensus 267 aADl~V~~S-------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~ 339 (385)
T TIGR00215 267 AADAALLAS-------GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAI 339 (385)
T ss_pred hCCEEeecC-------CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHH
Confidence 999999998 556679999999999762 111 12222222222222223345999999
Q ss_pred HHHHHhhCH----HHHHHHHHHHHHHHHHhcC
Q 023290 233 NIVKLATHV----ERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 233 ~i~~l~~~~----~~~~~~~~~~~~~~~~~~~ 260 (284)
.+.++++|+ +.++++.+...+ +++...
T Consensus 340 ~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~l~ 370 (385)
T TIGR00215 340 ALLLLLENGLKAYKEMHRERQFFEE-LRQRIY 370 (385)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHH-HHHHhc
Confidence 999999999 888777766554 434444
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.58 E-value=7.3e-13 Score=113.64 Aligned_cols=251 Identities=11% Similarity=0.046 Sum_probs=178.8
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccC------------CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 79 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~------------~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~ 79 (284)
+.+-.+|.+=+.+...++.+.+-+.+.+|... -++.+.|.|+|++.+........ ......++++++
T Consensus 175 ~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~ 253 (474)
T PRK10117 175 EQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK 253 (474)
T ss_pred HHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC
Confidence 33445666667777666666554444333221 13567899999988765433222 222466777765
Q ss_pred CCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH----HHHHHHHHHHHc----CC
Q 023290 80 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KI 151 (284)
Q Consensus 80 ~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~~----~~ 151 (284)
++.+|+.+.|++..||+..=+.|+.++++..++.. .++.|+.+......... +..++.+++.+. +-
T Consensus 254 ---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~---gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~ 327 (474)
T PRK10117 254 ---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHH---GKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQ 327 (474)
T ss_pred ---CCeEEEEecccccccCHHHHHHHHHHHHHhChhhc---CCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCC
Confidence 45677789999999999999999999998877753 67888877765433322 334444444432 22
Q ss_pred CC--cEEEeccc---cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC-----CEEEcCCCCcceeeecCCceeeec
Q 023290 152 QD--RVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 152 ~~--~v~~~~~~---~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~-----Pvi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
.+ -|.++... +++..+|+.||+++.++. .+|+.++..|+.+|-. ++|.|...|..+.+. .+++++
T Consensus 328 ~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVN 402 (474)
T PRK10117 328 LGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVN 402 (474)
T ss_pred CCceeEEEecCCCCHHHHHHHHHhccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEEC
Confidence 22 25554432 788899999999999999 9999999999999965 377787777777663 389999
Q ss_pred CCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 222 VGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
|.| +++++++|.+.+. .++++++..+..++.+. .++....++.+++-+..+..
T Consensus 403 P~d--~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~-~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 403 PYD--RDEVAAALDRALTMPLAERISRHAEMLDVIV-KNDINHWQECFISDLKQIVP 456 (474)
T ss_pred CCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHhhh
Confidence 999 9999999999999 56777777777777775 58999999999988877643
No 101
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.54 E-value=7.3e-13 Score=113.92 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=134.6
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
.....+++|+.+....+-+++. ++ +..++.++|-|+-.. +.... ....-++.++.
T Consensus 236 ~~~~~~~iIv~T~~q~~di~~r----~~-~~~~~~~ip~g~i~~-~~~~~-------------------r~~~~~l~~t~ 290 (438)
T TIGR02919 236 NETRNKKIIIPNKNEYEKIKEL----LD-NEYQEQISQLGYLYP-FKKDN-------------------KYRKQALILTN 290 (438)
T ss_pred CccccCeEEeCCHHHHHHHHHH----hC-cccCceEEEEEEEEe-ecccc-------------------CCcccEEEECC
Confidence 4477888888887655544433 33 245677788776522 11000 11222334451
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc-CHHHHHhhc
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAI 171 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~-~~~~~~~~a 171 (284)
+..++++..+.+.+ |+++|.| |.+.. ..+.|.++ .++ ++.+.+.|... ++.++|..|
T Consensus 291 -------s~~I~~i~~Lv~~l-------Pd~~f~I-ga~te----~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~ 348 (438)
T TIGR02919 291 -------SDQIEHLEEIVQAL-------PDYHFHI-AALTE----MSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTC 348 (438)
T ss_pred -------HHHHHHHHHHHHhC-------CCcEEEE-EecCc----ccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhc
Confidence 88889999888754 9999999 76542 34677777 555 44455555454 899999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
|+++..+. .|++++++.||+..|+||++.+.. +..+++.+ |.+++.++ +++|+++|..++.+++..++....
T Consensus 349 dlyLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~ 421 (438)
T TIGR02919 349 DIYLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQ 421 (438)
T ss_pred cEEEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999 999999999999999999999865 45566655 78999998 999999999999999776665444
Q ss_pred HHHHH
Q 023290 251 GYERV 255 (284)
Q Consensus 251 ~~~~~ 255 (284)
-++.+
T Consensus 422 q~~~a 426 (438)
T TIGR02919 422 QREHA 426 (438)
T ss_pred HHHHh
Confidence 44333
No 102
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.48 E-value=1.5e-11 Score=113.68 Aligned_cols=255 Identities=10% Similarity=0.044 Sum_probs=179.2
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccC---------------CCeEEEecCCccccchhhhhhhHHHHHHHHHHH
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM---------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 76 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~---------------~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~ 76 (284)
+.+-.+|.+=+.+...++.+.+-+.+.+|... -++.+.|-|+|+..+..............++++
T Consensus 253 ~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~ 332 (854)
T PLN02205 253 RALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIK 332 (854)
T ss_pred HHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHH
Confidence 34446777777777777777665555555432 135678999998877654443333333466777
Q ss_pred HhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH----HHHHHHHHHHH----
Q 023290 77 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ---- 148 (284)
Q Consensus 77 ~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~---- 148 (284)
+++- +++.+|+-+.|++..||+..=+.|+.+++++.++.. .++.|+.+......... +..++.+.+.+
T Consensus 333 ~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~---gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~ 408 (854)
T PLN02205 333 QFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQ---GKVVLVQIANPARGKGKDVKEVQAETHSTVKRINET 408 (854)
T ss_pred Hhcc-CCCEEEEEccCcccccCHHHHHHHHHHHHHhCcccc---CCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 7652 246678889999999999999999999988776542 56778877765443322 33344444443
Q ss_pred cCCCC--cEEEeccc---cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC-------------------CEEEcCC
Q 023290 149 KKIQD--RVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLGTAA 204 (284)
Q Consensus 149 ~~~~~--~v~~~~~~---~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~-------------------Pvi~~~~ 204 (284)
+|-.+ -|+++... +++.++|+.||+++.++. .+|+.++..|+.+|.. .+|.|..
T Consensus 409 fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEf 486 (854)
T PLN02205 409 FGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEF 486 (854)
T ss_pred cCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEeeec
Confidence 22222 25665432 789999999999999999 9999999999999854 2556665
Q ss_pred CCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 205 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 205 ~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
.|....+. .+++++|.| +++++++|.+.+. .+++++...++.++++. .++...+++.++.-++.+.++
T Consensus 487 aGaa~~L~---~Ai~VNP~d--~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~-~~d~~~W~~~fl~~l~~~~~~ 555 (854)
T PLN02205 487 IGCSPSLS---GAIRVNPWN--IDAVADAMDSALEMAEPEKQLRHEKHYRYVS-THDVGYWARSFLQDLERTCRD 555 (854)
T ss_pred cchhHHhC---cCeEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHH
Confidence 55555442 379999999 9999999999999 55666666667777775 589999999988888777543
No 103
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6.1e-11 Score=101.56 Aligned_cols=250 Identities=15% Similarity=0.107 Sum_probs=175.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhc-------------ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHh
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 78 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~-------------~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~ 78 (284)
..+-.+|-+=+.+...+..+...+.+..+ ....++..+|-|+|+..+..............++++.+
T Consensus 199 ~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~ 278 (486)
T COG0380 199 EGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAEL 278 (486)
T ss_pred HHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHh
Confidence 33445666666777666666654444332 12245778899999987765443222212235566665
Q ss_pred CCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH----HHHHHHHHHHH----cC
Q 023290 79 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KK 150 (284)
Q Consensus 79 ~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~----~~ 150 (284)
+ .+..+|+.+.|++.-||+..=+.|+.+++...++.. .++.++.++.......+ +...+...+.+ +|
T Consensus 279 ~--~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~---~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG 353 (486)
T COG0380 279 G--RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWR---GKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFG 353 (486)
T ss_pred c--CCceEEEEehhcccccCcHHHHHHHHHHHHhChhhh---CceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcC
Confidence 5 236777789999999999999999999998888753 68888888876655544 23333333333 22
Q ss_pred CCC--cEEEeccc---cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhc----CCCEEEcCCCCcceeeecCCceeeec
Q 023290 151 IQD--RVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF----QLPVLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 151 ~~~--~v~~~~~~---~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~----G~Pvi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
..+ -|.++... +++.++|..||+++.++. .+|+.++..|+.+| +-|.|.|...|....+.+ .++++
T Consensus 354 ~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVN 428 (486)
T COG0380 354 SLSWTPVHYLHRDLDRNELLALYRAADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVN 428 (486)
T ss_pred CCCcceeEEEeccCCHHHHHHHHhhhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeEC
Confidence 211 25555432 788999999999999999 89999999999998 346777776666665533 79999
Q ss_pred CCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 222 VGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
|.| .++++++|...+. +++++++.-+..++.+. .++...++..+++-+..
T Consensus 429 P~d--~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~-~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 429 PWD--TKEVADAIKRALTMSLEERKERHEKLLKQVL-THDVARWANSFLDDLAQ 479 (486)
T ss_pred CCC--hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHh
Confidence 999 9999999999998 66777776677777665 58888888887776654
No 104
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.41 E-value=3.4e-11 Score=103.07 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=124.0
Q ss_pred HHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-
Q 023290 74 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 152 (284)
Q Consensus 74 ~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~- 152 (284)
.|+.+|++++.++++++.++ .|-.+..+++|.++++.+ |+.+|++...+.. ..+.+++.+.+.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~v-------P~S~L~L~~~~~~----~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILKAV-------PNSRLWLLRFPAS----GEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHHHS-------TTEEEEEEETSTT----HHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHHhC-------CCcEEEEeeCCHH----HHHHHHHHHHHcCCCh
Confidence 47899999999888877765 577889999999998855 8899988765331 457888889999985
Q ss_pred CcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee-----c-CCceeeecCCC
Q 023290 153 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV-----N-GTTGLLHPVGK 224 (284)
Q Consensus 153 ~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~-----~-~~~g~~~~~~d 224 (284)
+++.|.+.. ++....|+.+|+++-+.. -+.+.+.+||+.+|+|||+-.-..+..-+. . |-..+++..
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p---~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s-- 416 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTFP---YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADS-- 416 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--SS---S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SS--
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCCC---CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCC--
Confidence 689998864 556667899999998764 444789999999999999976443333221 1 222333332
Q ss_pred CChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHH
Q 023290 225 EGITPLAKNIVKLATHVERRLTMGKRGYERVK--EIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 275 (284)
.+++.+.-..+..|++.++++.++.++... ..|+...+++.+++.|+.+
T Consensus 417 --~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 417 --EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999988887664 3599999999999999875
No 105
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=8e-10 Score=92.81 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=126.7
Q ss_pred ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCC
Q 023290 41 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 120 (284)
Q Consensus 41 ~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~ 120 (284)
.+.+++.++.|++..++.. .+. ...+..... ++++|+.+|. ..|...+-+++..+...+.
T Consensus 151 ~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~~--~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~------ 210 (357)
T COG0707 151 VKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGRL--DKKTILVTGG---SQGAKALNDLVPEALAKLA------ 210 (357)
T ss_pred CCCCceEEecCcccHHhhc-cch--------hhhhhhccC--CCcEEEEECC---cchhHHHHHHHHHHHHHhh------
Confidence 4455688888888887765 221 222222222 4445544443 2344444444444444332
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.+++++...+.. ..+.+.....+++. +.+.++.++|..+|+.||++|+=+ .++++.|..++|+|.|
T Consensus 211 ~~~~v~~~~G~~-----~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~a~g~P~I 276 (357)
T COG0707 211 NRIQVIHQTGKN-----DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISRA------GALTIAELLALGVPAI 276 (357)
T ss_pred hCeEEEEEcCcc-----hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHHHhCCCEE
Confidence 246665554432 23455555555543 888888899999999999999544 3689999999999999
Q ss_pred EcCCCCc--------ceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 201 GTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 201 ~~~~~~~--------~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.-..+.. ..++++...|.+++..+.+++.+.+.|.+++++++.+++|.+++++... ...++++.+++
T Consensus 277 liP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~-----p~aa~~i~~~~ 351 (357)
T COG0707 277 LVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGK-----PDAAERIADLL 351 (357)
T ss_pred EeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHH
Confidence 7654432 2345566678888877777999999999999999999999998876443 23344444444
Q ss_pred HH
Q 023290 273 KE 274 (284)
Q Consensus 273 ~~ 274 (284)
..
T Consensus 352 ~~ 353 (357)
T COG0707 352 LA 353 (357)
T ss_pred HH
Confidence 43
No 106
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=8.9e-10 Score=91.81 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=151.5
Q ss_pred cccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 10 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 10 ~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
....++.++.+++.|+..++.+.+ +|.. ++.+..|=- +...... ........+|.+++.+ +.+++.
T Consensus 171 ~~~~~~~i~li~aQse~D~~Rf~~-----LGa~--~v~v~GNlK---fd~~~~~--~~~~~~~~~r~~l~~~--r~v~ia 236 (419)
T COG1519 171 ARLLFKNIDLILAQSEEDAQRFRS-----LGAK--PVVVTGNLK---FDIEPPP--QLAAELAALRRQLGGH--RPVWVA 236 (419)
T ss_pred HHHHHHhcceeeecCHHHHHHHHh-----cCCc--ceEEeccee---ecCCCCh--hhHHHHHHHHHhcCCC--CceEEE
Confidence 345667889999999988877655 4544 466665531 1111111 1111246778887754 556655
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-------------CcEE
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-------------DRVH 156 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-------------~~v~ 156 (284)
.++ ....-+.+++++..+.+ ++++..++++-..+ +-...+.+++++.|+. .+|.
T Consensus 237 aST--H~GEeei~l~~~~~l~~-------~~~~~llIlVPRHp----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~ 303 (419)
T COG1519 237 AST--HEGEEEIILDAHQALKK-------QFPNLLLILVPRHP----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVL 303 (419)
T ss_pred ecC--CCchHHHHHHHHHHHHh-------hCCCceEEEecCCh----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEE
Confidence 554 22334557888888877 55899999998865 4567778888887763 1344
Q ss_pred EeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-C---cceeeecCCceeeecCCCCChHHHHH
Q 023290 157 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-G---TTEIVVNGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 157 ~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~---~~e~v~~~~~g~~~~~~d~~~~~~~~ 232 (284)
+.+..-+|..+|+.+|+.+..... ..-.|..++|+.++|+|||....- . +.+.+...+.|+.++. .+.+++
T Consensus 304 l~DtmGEL~l~y~~adiAFVGGSl-v~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~ 378 (419)
T COG1519 304 LGDTMGELGLLYGIADIAFVGGSL-VPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAK 378 (419)
T ss_pred EEecHhHHHHHHhhccEEEECCcc-cCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHH
Confidence 444446889999999997765432 445578999999999999987533 2 2333334556677664 678888
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 233 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 233 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++..+..|++.+.++++++...+.++-. ..++..+.++
T Consensus 379 ~v~~l~~~~~~r~~~~~~~~~~v~~~~g---al~r~l~~l~ 416 (419)
T COG1519 379 AVELLLADEDKREAYGRAGLEFLAQNRG---ALARTLEALK 416 (419)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhH---HHHHHHHHhh
Confidence 8888888999999999999998875322 3444444443
No 107
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-09 Score=92.82 Aligned_cols=187 Identities=13% Similarity=0.206 Sum_probs=137.0
Q ss_pred HHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-C
Q 023290 75 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-D 153 (284)
Q Consensus 75 r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~ 153 (284)
|.+.|++++.++++++++ ..|-...+++.+.++.+.. |+-.|++.|+|. +++....++..+++.|+. +
T Consensus 421 R~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~~v-------P~Svl~L~~~~~--~~~~~~~l~~la~~~Gv~~e 489 (620)
T COG3914 421 RAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILSAV-------PNSVLLLKAGGD--DAEINARLRDLAEREGVDSE 489 (620)
T ss_pred hhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHHhC-------CCcEEEEecCCC--cHHHHHHHHHHHHHcCCChh
Confidence 678999998888877665 4577888999998887744 888999998863 345889999999999974 6
Q ss_pred cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce-----eeec-CCceeeecCCCC
Q 023290 154 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-----IVVN-GTTGLLHPVGKE 225 (284)
Q Consensus 154 ~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e-----~v~~-~~~g~~~~~~d~ 225 (284)
++.|.++. ++..+.|.-||+++-+.. .+...+.+||+.||+|||+-.-..+.. ++.. |..-++++.
T Consensus 490 RL~f~p~~~~~~h~a~~~iADlvLDTyP---Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s--- 563 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIADLVLDTYP---YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADS--- 563 (620)
T ss_pred heeecCCCCCHHHHHhhchhheeeeccc---CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCC---
Confidence 89999985 677888999999997764 344679999999999999853211111 1111 222223332
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHhh
Q 023290 226 GITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
.++..+.-..+-.|...+++....-.+.... -|+.+.+++++..+|.++.++.
T Consensus 564 -~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~y 618 (620)
T COG3914 564 -RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSEY 618 (620)
T ss_pred -HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777776666665554444433 6999999999999999988753
No 108
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.15 E-value=3.4e-09 Score=89.74 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=112.3
Q ss_pred ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCC
Q 023290 41 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 120 (284)
Q Consensus 41 ~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~ 120 (284)
++.+++.++.+++..++.... +...++.+++++++++++.+|.- .|...+-+++..+...+.
T Consensus 151 ~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS---~Ga~~in~~~~~~l~~l~------ 212 (352)
T PRK12446 151 LPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGS---LGAKKINETVREALPELL------ 212 (352)
T ss_pred CCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCc---cchHHHHHHHHHHHHhhc------
Confidence 455678888888877654221 23456678887776665555532 233333333333332221
Q ss_pred CCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.++++++ +|... ....+. .. .++...++. +++..+|..||++|.-+ .++++.|++++|+|
T Consensus 213 ~~~~vv~~~G~~~-----~~~~~~----~~---~~~~~~~f~~~~m~~~~~~adlvIsr~------G~~t~~E~~~~g~P 274 (352)
T PRK12446 213 LKYQIVHLCGKGN-----LDDSLQ----NK---EGYRQFEYVHGELPDILAITDFVISRA------GSNAIFEFLTLQKP 274 (352)
T ss_pred cCcEEEEEeCCch-----HHHHHh----hc---CCcEEecchhhhHHHHHHhCCEEEECC------ChhHHHHHHHcCCC
Confidence 2456554 45321 122121 11 134455776 68999999999999543 37799999999999
Q ss_pred EEEcCCCC---------cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 199 VLGTAAGG---------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 199 vi~~~~~~---------~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
.|...... +..++.+...+..+...+.+++.+.+++.+++.|++.+++ ++ ..+....-++++.
T Consensus 275 ~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~-----~~~~~~~aa~~i~ 346 (352)
T PRK12446 275 MLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL-----KKYNGKEAIQTII 346 (352)
T ss_pred EEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH-----HHcCCCCHHHHHH
Confidence 99875431 1224444556666665555589999999999988876542 22 1244445555555
Q ss_pred HHHH
Q 023290 270 VVLK 273 (284)
Q Consensus 270 ~~~~ 273 (284)
+++.
T Consensus 347 ~~i~ 350 (352)
T PRK12446 347 DHIS 350 (352)
T ss_pred HHHH
Confidence 5543
No 109
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.11 E-value=9.1e-09 Score=88.45 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=123.9
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC-CeEEEEecc
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINS 92 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~g~ 92 (284)
-+.++.+.+....+.+++.+. |. ++.++.|++-........ . +++++ ..++++.|+
T Consensus 158 ~~~a~~v~~~~~~t~~~l~~~-----g~---k~~~vGnPv~d~l~~~~~-------------~--~l~~~~~~lllLpGS 214 (396)
T TIGR03492 158 SRRCLAVFVRDRLTARDLRRQ-----GV---RASYLGNPMMDGLEPPER-------------K--PLLTGRFRIALLPGS 214 (396)
T ss_pred chhhCEEeCCCHHHHHHHHHC-----CC---eEEEeCcCHHhcCccccc-------------c--ccCCCCCEEEEECCC
Confidence 367777777777777775542 33 688888887444321100 0 33333 345566665
Q ss_pred ccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC--------------CcEE
Q 023290 93 VSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVH 156 (284)
Q Consensus 93 ~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~--------------~~v~ 156 (284)
-.. .+++..+++++..+.+ + +++.+++.-.+.. ..+.+++...+.+.. +++.
T Consensus 215 R~ae~~~~lp~~l~al~~L~~-------~-~~~~~v~~~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 282 (396)
T TIGR03492 215 RPPEAYRNLKLLLRALEALPD-------S-QPFVFLAAIVPSL----SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLE 282 (396)
T ss_pred CHHHHHccHHHHHHHHHHHhh-------C-CCeEEEEEeCCCC----CHHHHHHHHHhcCceecCCccccchhhccCceE
Confidence 533 4567788888888743 2 5677766542221 235555555544432 1356
Q ss_pred EeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc---ceeeecC----CceeeecCCCCChHH
Q 023290 157 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT---TEIVVNG----TTGLLHPVGKEGITP 229 (284)
Q Consensus 157 ~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~---~e~v~~~----~~g~~~~~~d~~~~~ 229 (284)
+..+..++..+|+.||++|..| |.+..|++++|+|+|.....+. ..+.+.. ..++.+...+ ++.
T Consensus 283 v~~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~--~~~ 353 (396)
T TIGR03492 283 VLLGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKN--PEQ 353 (396)
T ss_pred EEechHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCC--HHH
Confidence 6666678999999999999876 4566999999999998863322 1122220 2334444444 899
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Q 023290 230 LAKNIVKLATHVERRLTMGKRGYERV 255 (284)
Q Consensus 230 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 255 (284)
+++.+..+++|++.+++|.+++++..
T Consensus 354 l~~~l~~ll~d~~~~~~~~~~~~~~l 379 (396)
T TIGR03492 354 AAQVVRQLLADPELLERCRRNGQERM 379 (396)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHhc
Confidence 99999999999998888875444433
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.90 E-value=1.3e-07 Score=78.34 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=123.1
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCC-eEEEE
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAI 89 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~ 89 (284)
....+.+|.+.+.-....+++.+ +|.+ .+.|.|+.-.+.. ..++ +...|+++|++.+. .+.+.
T Consensus 131 ~~i~~~~D~lLailPFE~~~y~k-----~g~~---~~yVGHpl~d~i~-~~~~-------r~~ar~~l~~~~~~~~lalL 194 (381)
T COG0763 131 VKIAKYVDHLLAILPFEPAFYDK-----FGLP---CTYVGHPLADEIP-LLPD-------REAAREKLGIDADEKTLALL 194 (381)
T ss_pred HHHHHHhhHeeeecCCCHHHHHh-----cCCC---eEEeCChhhhhcc-cccc-------HHHHHHHhCCCCCCCeEEEe
Confidence 34456788888888888887665 3443 6667766543321 1122 46689999988765 44556
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC-CCcEEEeccccCHHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~~~~~~~~~ 168 (284)
.|+ +...+..++..+.+..+.+++ ++++.++++--... ..+.++....+... ...+.+.+ .+-.+.|
T Consensus 195 PGS--R~sEI~rl~~~f~~a~~~l~~---~~~~~~~vlp~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~ 262 (381)
T COG0763 195 PGS--RRSEIRRLLPPFVQAAQELKA---RYPDLKFVLPLVNA-----KYRRIIEEALKWEVAGLSLILID--GEKRKAF 262 (381)
T ss_pred cCC--cHHHHHHHHHHHHHHHHHHHh---hCCCceEEEecCcH-----HHHHHHHHHhhccccCceEEecC--chHHHHH
Confidence 674 333455555555554444444 44899998866542 33444433333222 11233333 3567789
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-----------------CCCcceeeecCCce-eeecCCCCChHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-----------------AGGTTEIVVNGTTG-LLHPVGKEGITPL 230 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-----------------~~~~~e~v~~~~~g-~~~~~~d~~~~~~ 230 (284)
..||+.+..| |++.+|++.+|+|.|++- ..+.+.++-+.... -++. .+..++.+
T Consensus 263 ~~aD~al~aS-------GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq-~~~~pe~l 334 (381)
T COG0763 263 AAADAALAAS-------GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQ-EDCTPENL 334 (381)
T ss_pred HHhhHHHHhc-------cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHh-hhcCHHHH
Confidence 9999999877 789999999999999861 11222222111000 0111 11238999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH
Q 023290 231 AKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 231 ~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
++++..++.|...++++.+...
T Consensus 335 a~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 335 ARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred HHHHHHHhcChHhHHHHHHHHH
Confidence 9999999999966666655444
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.82 E-value=3.9e-07 Score=77.67 Aligned_cols=198 Identities=14% Similarity=0.181 Sum_probs=110.2
Q ss_pred hcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC-CeEEEEecccc--ccccHHHHHHHHHHHHHHHHh
Q 023290 39 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGKGQDLFLHSFYESLELIKE 115 (284)
Q Consensus 39 ~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~g~~~--~~k~~~~~~~a~~~l~~~~~~ 115 (284)
-|.+..+|.++.|..-......... .+..+.+++|++.+ .++++.+-+.. .....+.+.+.+..+.. +.
T Consensus 162 eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~-~~- 233 (365)
T TIGR03568 162 MGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDE-LN- 233 (365)
T ss_pred cCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHH-hc-
Confidence 3677778888877543322211111 13567788888643 44333333222 22222333333333322 10
Q ss_pred hccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHH
Q 023290 116 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 116 ~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
.++.+ +.-.+.+......+.++..... .++|.++++. .++..+++.|++++..|. | .+.||.
T Consensus 234 -----~~~~v-i~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------g-gi~EA~ 297 (365)
T TIGR03568 234 -----KNYIF-TYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNSS------S-GIIEAP 297 (365)
T ss_pred -----cCCEE-EEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcCh------h-HHHhhh
Confidence 23433 3222222222233444444221 3579999974 789999999999996663 2 338999
Q ss_pred hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023290 194 AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 271 (284)
Q Consensus 194 a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
++|+|+|+- +.-+|.++.+.+.+.+.. | ++++.+++.++ .+++.+..+ ......|......+++.++
T Consensus 298 ~lg~Pvv~l--~~R~e~~~~g~nvl~vg~-~--~~~I~~a~~~~-~~~~~~~~~-----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 298 SFGVPTINI--GTRQKGRLRADSVIDVDP-D--KEEIVKAIEKL-LDPAFKKSL-----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hcCCCEEee--cCCchhhhhcCeEEEeCC-C--HHHHHHHHHHH-hChHHHHHH-----hhCCCCCCCChHHHHHHHh
Confidence 999999954 456677766777777743 4 89999999995 444333222 1122346555666666554
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.80 E-value=5.3e-07 Score=76.15 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=119.3
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCC-eEEEEeccc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSV 93 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~~g~~ 93 (284)
+.+|.++|.-....+++++. |+ +++.+.|+.-........ +...++.+ ++++. .+.++.|+=
T Consensus 132 ~~~D~ll~ifPFE~~~y~~~-----g~---~~~~VGHPl~d~~~~~~~--------~~~~~~~~-l~~~~~iIaLLPGSR 194 (373)
T PF02684_consen 132 KYVDHLLVIFPFEPEFYKKH-----GV---PVTYVGHPLLDEVKPEPD--------RAEAREKL-LDPDKPIIALLPGSR 194 (373)
T ss_pred HHHhheeECCcccHHHHhcc-----CC---CeEEECCcchhhhccCCC--------HHHHHHhc-CCCCCcEEEEeCCCC
Confidence 56788889988888887763 32 467777775333221111 24445555 55554 455667753
Q ss_pred cc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 94 SR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 94 ~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
.. .+....+++++..+.+ ++|++++++..... ...+.+.+..+..+....+... ..+-.+.|+.|
T Consensus 195 ~~EI~rllP~~l~aa~~l~~-------~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~a 261 (373)
T PF02684_consen 195 KSEIKRLLPIFLEAAKLLKK-------QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVII--EGESYDAMAAA 261 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhC
Confidence 22 3445666777777665 45899999876542 1333355555554432233322 34777899999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-CC----------------CcceeeecCCc-eeeecCCCCChHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AG----------------GTTEIVVNGTT-GLLHPVGKEGITPLAKN 233 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-~~----------------~~~e~v~~~~~-g~~~~~~d~~~~~~~~~ 233 (284)
|+.+..| |++.+|++.+|+|.|+.- .. +...++-+... .-++. ++.+++.++++
T Consensus 262 d~al~~S-------GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ-~~~~~~~i~~~ 333 (373)
T PF02684_consen 262 DAALAAS-------GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQ-EDATPENIAAE 333 (373)
T ss_pred cchhhcC-------CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhc-ccCCHHHHHHH
Confidence 9999887 789999999999999751 11 11112111100 00111 12239999999
Q ss_pred HHHHhhCHHHHHHHHH
Q 023290 234 IVKLATHVERRLTMGK 249 (284)
Q Consensus 234 i~~l~~~~~~~~~~~~ 249 (284)
+..+++|++.++....
T Consensus 334 ~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 334 LLELLENPEKRKKQKE 349 (373)
T ss_pred HHHHhcCHHHHHHHHH
Confidence 9999999887544333
No 113
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.76 E-value=4.7e-07 Score=78.20 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=78.3
Q ss_pred CCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCC
Q 023290 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEG 226 (284)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~ 226 (284)
+++++.+.++... ..+|..||++|..+- ..++.||+++|+|+|+....+ +...+.+...|..+...+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 4568988888743 588999999996442 358999999999999875443 22334455667777655445
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.++++++|.+++.|++.++++.+ .++.+...-..+..++.+.+++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~-l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRK-MRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHhh
Confidence 89999999999999876655533 3334444456666665555443
No 114
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.5e-06 Score=72.80 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=83.5
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec-----CCceeeec-----CCCCChHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-----GTTGLLHP-----VGKEGITPLA 231 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~-----~~~g~~~~-----~~d~~~~~~~ 231 (284)
-|+.++.+.|.+.+.||+ +|++|.+..|+-.||+|-|+|+..|+.-+.++ ..-|+++- .-|+++++++
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 478889999999999999 99999999999999999999998887655433 22355432 1222477777
Q ss_pred HHHHHHhhCHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 232 KNIVKLATHVERRLTMG-KRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 232 ~~i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
+-+.++.... .|+++. .+.-+.+....+|..+...|.+.=.-++...
T Consensus 570 ~~m~~F~~qs-RRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL~r~ 617 (692)
T KOG3742|consen 570 SFMYEFCKQS-RRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLALSRA 617 (692)
T ss_pred HHHHHHHHHH-HHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHHHhh
Confidence 7777776543 344444 4555667778999999888887766555543
No 115
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.63 E-value=1.7e-06 Score=69.79 Aligned_cols=172 Identities=9% Similarity=0.038 Sum_probs=115.1
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
++++|+.-.+-++..++..+++++.+... .++++++-=+-+.++..|.+++.+..+++--.+++..+...
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~L~~l~~~~~---------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l 215 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEALRALHQQFG---------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKL 215 (322)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHhC---------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhC
Confidence 46777655566778888888888766532 77877664322224456899999999988655788877653
Q ss_pred --cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC-CCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 162 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 162 --~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~-~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+++.++++.||+.+..-.. -+|.|+.++ .+.+|+||+.+. ++...++.+.+ .-++++.++.+...+.+
T Consensus 216 ~f~eYl~lL~~~Dl~~f~~~R-QQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~e------ 286 (322)
T PRK02797 216 PFDDYLALLRQCDLGYFIFAR-QQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDDLDEDIVRE------ 286 (322)
T ss_pred CHHHHHHHHHhCCEEEEeech-hhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCC-CeEEecCCcccHHHHHH------
Confidence 7899999999998876542 678885555 899999999875 55555554333 33444544322222222
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q 023290 239 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (284)
..+++....++.+. |+.+.+.+.+.+++..+.++
T Consensus 287 ----~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 287 ----AQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred ----HHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhCC
Confidence 22334444445453 99999999999999876654
No 116
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.61 E-value=6.3e-06 Score=74.36 Aligned_cols=207 Identities=18% Similarity=0.113 Sum_probs=138.5
Q ss_pred CcccccccchhhHHHHHHHHHHHh-cccCCCeEEEecCCccccchhhhhhh-H---------------------------
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNV-A--------------------------- 66 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~~g~~~~~~~~~~~~~-~--------------------------- 66 (284)
.+..+-.+|.-..+..++.....+ ++.+.++.-+.||+.+..+....-+. .
T Consensus 374 ~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~ 453 (750)
T COG0058 374 GSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADD 453 (750)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCCcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhh
Confidence 344444555555555555433333 56678899999999887664321110 0
Q ss_pred ------HHHHHHHHH--------HHhC--CCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 023290 67 ------KRVLREHVR--------ESLG--VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 130 (284)
Q Consensus 67 ------~~~~~~~~r--------~~~~--~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~ 130 (284)
-...+.+.+ .+.| +.++.+.++++-|+..+|.....+.-+..+...+++. ..|.+.+++.|.
T Consensus 454 ~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGK 531 (750)
T COG0058 454 KAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGK 531 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEecc
Confidence 000011111 1122 3467788999999999999888887777777777631 336677788888
Q ss_pred CCCCChHH---HHHHHHHHHHcCCCCcEEEeccc-cCH-HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 131 DMNAQTKF---ESELRNYVMQKKIQDRVHFVNKT-LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 131 ~~~~~~~~---~~~l~~~~~~~~~~~~v~~~~~~-~~~-~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
..|.+... ...+...++..+...+|.|++.. -.+ ..++..||+-...|....|..|++-+-+|..|.+-|+|-.|
T Consensus 532 AhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDG 611 (750)
T COG0058 532 AHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDG 611 (750)
T ss_pred CCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeecccc
Confidence 66655322 23333344444445578888864 333 44679999999887777899999999999999999999999
Q ss_pred Ccceeee--cCCceeeecCCC
Q 023290 206 GTTEIVV--NGTTGLLHPVGK 224 (284)
Q Consensus 206 ~~~e~v~--~~~~g~~~~~~d 224 (284)
...|+.+ .+.||+.+-...
T Consensus 612 anvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 612 ANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred HHHHHHHhcCCCceEEeCCch
Confidence 9999987 789999987754
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.57 E-value=3.9e-06 Score=72.73 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=67.9
Q ss_pred CCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCC
Q 023290 150 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~ 225 (284)
..+++|.+.++. ....+|..||++|.. . ...++.||+++|+|+|+....+ +...+...+.|..++..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~h-----g-G~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVHH-----G-GAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeeec-----C-CchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 456789999987 577899999999942 2 2579999999999999886554 2344455567777766543
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 226 GITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
+.+++.+++.++++++ .+++..+.
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAAL 381 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 4899999999999853 34444433
No 118
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.55 E-value=1.3e-06 Score=71.69 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=72.4
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEE-EEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
+.+++++|..++.+....+++++..+. .++++. ++|.+.+ ..+.+++..+.. .++.+.++++
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~----------~~~~i~vv~G~~~~----~~~~l~~~~~~~---~~i~~~~~~~ 233 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ----------INISITLVTGSSNP----NLDELKKFAKEY---PNIILFIDVE 233 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc----------cCceEEEEECCCCc----CHHHHHHHHHhC---CCEEEEeCHH
Confidence 446778888887776677777776531 334433 5666543 346677776653 3799999999
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
++.++|..||++|.++ |.++.|++++|+|+|+.....
T Consensus 234 ~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~~~~ 270 (279)
T TIGR03590 234 NMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAICLAE 270 (279)
T ss_pred HHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEEecc
Confidence 9999999999999743 579999999999999876543
No 119
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.54 E-value=5.6e-06 Score=70.91 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=109.4
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
......|.+++.|....+.+++ .++.+.+++.+...+-....+...... +..+++.++++.++.+|+|+=
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~----~f~~~~~~i~~~G~PR~D~l~~~~~~~------~~~i~~~~~~~~~~k~ILyaP 199 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKK----AFGYPEDKILVTGYPRNDYLFNKSKEN------RNRIKKKLGIDKDKKVILYAP 199 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHH----HTT--GGGEEES--GGGHHHHHSTT-H------HHHHHHHTT--SS-EEEEEE-
T ss_pred hhccCCcEEEECCHHHHHHHHH----HhccCcceEEEeCCCeEhHHhccCHHH------HHHHHHHhccCCCCcEEEEee
Confidence 3556778888888877776444 477776666554433222222222211 467888999988888888876
Q ss_pred cccccccH------HHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEeccccCH
Q 023290 92 SVSRGKGQ------DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTV 164 (284)
Q Consensus 92 ~~~~~k~~------~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~ 164 (284)
++...... ...++ +..+. .+. ..++.+++-..+ ........ ....++|.++....++
T Consensus 200 T~R~~~~~~~~~~~~~~~~-~~~l~-~~~-----~~~~~li~k~Hp---------~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (369)
T PF04464_consen 200 TWRDNSSNEYFKFFFSDLD-FEKLN-FLL-----KNNYVLIIKPHP---------NMKKKFKDFKEDNSNIIFVSDNEDI 263 (369)
T ss_dssp ---GGG--GGSS----TT--HHHHH-HHH-----TTTEEEEE--SH---------HHHTT----TT-TTTEEE-TT-S-H
T ss_pred ccccccccccccccccccC-HHHHH-HHh-----CCCcEEEEEeCc---------hhhhchhhhhccCCcEEECCCCCCH
Confidence 54432221 11111 22222 111 178888876652 11111211 3345688888777799
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc--CCCCcce---e---eecCCceeeecCCCCChHHHHHHHHH
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT--AAGGTTE---I---VVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~--~~~~~~e---~---v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
.+++..||++|.-. +.++.|++.+++|||.. |.....+ + ..+...|..+. +.+++.++|..
T Consensus 264 ~~ll~~aDiLITDy-------SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~ 332 (369)
T PF04464_consen 264 YDLLAAADILITDY-------SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIEN 332 (369)
T ss_dssp HHHHHT-SEEEESS--------THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTT
T ss_pred HHHHHhcCEEEEec-------hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHh
Confidence 99999999999433 55999999999999954 4322211 1 11222233333 27999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 237 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++.++....+..++..+..-. +.-...++++.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 333 IIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYI 367 (369)
T ss_dssp HHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHH
Confidence 887665443333333333322 33335555555544
No 120
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=2.3e-05 Score=65.34 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=129.5
Q ss_pred hcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHH-hCCCCCCeEEEEeccccc-cccHHHHHHHHHHHHHHHHhh
Q 023290 39 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR-GKGQDLFLHSFYESLELIKEK 116 (284)
Q Consensus 39 ~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~~g~~~~-~k~~~~~~~a~~~l~~~~~~~ 116 (284)
-|.+.++|.++.|.+-............ ....... ++...++++++..=|-.. .+++..+++++.++...
T Consensus 163 EG~~~~~IfvtGnt~iDal~~~~~~~~~----~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~---- 234 (383)
T COG0381 163 EGVPEKRIFVTGNTVIDALLNTRDRVLE----DSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEE---- 234 (383)
T ss_pred cCCCccceEEeCChHHHHHHHHHhhhcc----chhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHh----
Confidence 4888889999998764322221110000 0111111 444444455544444333 37888888888888773
Q ss_pred ccCCCCeEEEEEecCCCCChHHHHHHHHHH-HHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHH
Q 023290 117 KLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 117 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
++++.++.--... ..++... ..++-.++|+++.+. .++..++..|-+++.-| |...=||-
T Consensus 235 ---~~~~~viyp~H~~-------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-------GgiqEEAp 297 (383)
T COG0381 235 ---YPDVIVIYPVHPR-------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-------GGIQEEAP 297 (383)
T ss_pred ---CCCceEEEeCCCC-------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-------CchhhhHH
Confidence 3666665543322 3333333 556666689999886 67888899998777555 45777999
Q ss_pred hcCCCEEEcCC-CCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 194 AFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 194 a~G~Pvi~~~~-~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.+|+||++-.. ..-+|.++.| +-.++..+ .+.+.+++..++++++.+++|+. +...|.-.+..+++.+++
T Consensus 298 ~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~~---~~~i~~~~~~ll~~~~~~~~m~~-----~~npYgdg~as~rIv~~l 368 (383)
T COG0381 298 SLGKPVLVLRDTTERPEGVEAG-TNILVGTD---EENILDAATELLEDEEFYERMSN-----AKNPYGDGNASERIVEIL 368 (383)
T ss_pred hcCCcEEeeccCCCCccceecC-ceEEeCcc---HHHHHHHHHHHhhChHHHHHHhc-----ccCCCcCcchHHHHHHHH
Confidence 99999998754 3446666443 33455443 79999999999999998888754 334566666777777777
Q ss_pred HHHH
Q 023290 273 KEVL 276 (284)
Q Consensus 273 ~~~~ 276 (284)
....
T Consensus 369 ~~~~ 372 (383)
T COG0381 369 LNYF 372 (383)
T ss_pred HHHh
Confidence 6544
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.49 E-value=2.3e-05 Score=69.51 Aligned_cols=209 Identities=10% Similarity=0.090 Sum_probs=119.6
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC-CeEEEEec
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIIN 91 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~g 91 (284)
.-+.+|.++|.-....+++++. |+ +++.+.|+.-... ....+ +.+.++++|++++ +.+.+..|
T Consensus 358 i~k~vD~ll~IfPFE~~~y~~~-----gv---~v~yVGHPL~d~i-~~~~~-------~~~~r~~lgl~~~~~iIaLLPG 421 (608)
T PRK01021 358 LEKYLDLLLLILPFEQNLFKDS-----PL---RTVYLGHPLVETI-SSFSP-------NLSWKEQLHLPSDKPIVAAFPG 421 (608)
T ss_pred HHHHhhhheecCccCHHHHHhc-----CC---CeEEECCcHHhhc-ccCCC-------HHHHHHHcCCCCCCCEEEEECC
Confidence 3456788899888888887652 33 3667777753331 11111 3567889998645 55667777
Q ss_pred cccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 92 SVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 92 ~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
+=.. .+..+.+++++. .+.+. ++.++++..... ...+.+++.....+. -.+.+.... +-.++|+
T Consensus 422 SR~~EI~rllPv~l~aa~--~~~l~------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~~-~~~~~m~ 487 (608)
T PRK01021 422 SRRGDILRNLTIQVQAFL--ASSLA------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPSQ-FRYELMR 487 (608)
T ss_pred CCHHHHHHHHHHHHHHHH--HHHhc------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecCc-chHHHHH
Confidence 5321 234555556654 11222 457776643322 134555555543321 023333221 2368999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCC------------------CcceeeecCC-ceeeec-CCCCChH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAG------------------GTTEIVVNGT-TGLLHP-VGKEGIT 228 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~------------------~~~e~v~~~~-~g~~~~-~~d~~~~ 228 (284)
.||+.+..| |++.+|++.+|+|.|+. ... +...++.+.. ---++. ..|.+++
T Consensus 488 aaD~aLaaS-------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe 560 (608)
T PRK01021 488 ECDCALAKC-------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPE 560 (608)
T ss_pred hcCeeeecC-------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHH
Confidence 999999888 88999999999999974 111 1111111110 011221 1123499
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 023290 229 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 229 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (284)
.+++++ +++.|++.++++.+...+ +++...
T Consensus 561 ~La~~l-~lL~d~~~r~~~~~~l~~-lr~~Lg 590 (608)
T PRK01021 561 EVAAAL-DILKTSQSKEKQKDACRD-LYQAMN 590 (608)
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHH-HHHHhc
Confidence 999996 888888877777665544 433333
No 122
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.46 E-value=4.9e-06 Score=68.73 Aligned_cols=199 Identities=11% Similarity=0.069 Sum_probs=130.6
Q ss_pred CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCC
Q 023290 43 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 122 (284)
Q Consensus 43 ~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~ 122 (284)
..+.+.+++++|.+.+.+-+... .-..-+.++|+..+. ..+.+-+.+..=...+. .+
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~------v~ 216 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLM------VD 216 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchhhh------cc
Confidence 44677889999988877655321 122346678876654 12222222221111110 22
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc---ccCHHHHHhhccEEEEcCCCC-cC---ccchhHHHHHhc
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAW-GE---CFGRITIEAMAF 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---~~~~~~~~~~ad~~~~ps~~~-~e---~~~~~~~Eama~ 195 (284)
-++...|...+.. .+.. --.+++...|+ ...+...+..-|+.+.-++.. .+ ++.+.+.|+++|
T Consensus 217 rr~~~~g~~y~~~-----~~~~-----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 217 RRFYVLGPRYPDD-----IWGR-----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred ceeeecCCccchh-----hhcc-----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 4455566542211 0000 01123333333 356778888888887654421 11 136789999999
Q ss_pred CCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 196 QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 196 G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
|.|.++....+...++.+|..-++... ..++.+.+..++..++.++++++.+++.+...|+.+.-..++.+.+.++
T Consensus 287 ~~~liT~~~~~~e~~f~pgk~~iv~~d----~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI 362 (373)
T COG4641 287 GGFLITDYWKDLEKFFKPGKDIIVYQD----SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIASI 362 (373)
T ss_pred CCccccccHHHHHHhcCCchheEEecC----HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999988876555543 7999999999999999999999999999999999999998888888775
Q ss_pred HHh
Q 023290 276 LKK 278 (284)
Q Consensus 276 ~~~ 278 (284)
...
T Consensus 363 ~~r 365 (373)
T COG4641 363 NIR 365 (373)
T ss_pred HHh
Confidence 443
No 123
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.45 E-value=1.7e-05 Score=72.52 Aligned_cols=151 Identities=16% Similarity=0.116 Sum_probs=108.9
Q ss_pred CCCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHH---HHHH----HcCC
Q 023290 80 VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR---NYVM----QKKI 151 (284)
Q Consensus 80 ~~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~---~~~~----~~~~ 151 (284)
++++.+.++++-|+...|...+ ++..+.++.+..........+.++++.|...|.....+.-++ ..++ +..+
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v 618 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQI 618 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 5677788899999999999888 777777765544332112246888888887776543333332 2233 2233
Q ss_pred CC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec--CCceeeecCCCC
Q 023290 152 QD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVGKE 225 (284)
Q Consensus 152 ~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--~~~g~~~~~~d~ 225 (284)
.+ +|.|+... .-...++..||+....|....|..|++-+-+|..|.+.+++-.|...|+.++ +.||+.+-..
T Consensus 619 ~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~-- 696 (815)
T PRK14986 619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNT-- 696 (815)
T ss_pred cCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCC--
Confidence 44 68888764 3334578999999988777789999999999999999999999999999876 7899998765
Q ss_pred ChHHHHHH
Q 023290 226 GITPLAKN 233 (284)
Q Consensus 226 ~~~~~~~~ 233 (284)
.+++.+.
T Consensus 697 -~~ev~~~ 703 (815)
T PRK14986 697 -AEEVEAL 703 (815)
T ss_pred -HHHHHHH
Confidence 4555543
No 124
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.43 E-value=2.2e-06 Score=71.80 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=83.2
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
.+.+++++|..... .++++++.+ ++..++++|....+ ...++|.+.++.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~~~---------------~~~~ni~~~~~~~ 241 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNAAD---------------PRPGNIHVRPFST 241 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCccc---------------ccCCCEEEeecCh
Confidence 45677788876544 455555543 67888888764200 114689999976
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce------eeecCCceeeecCCCCChHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
.++.++|..||++|..+ .-.++.||+++|+|+|+-...+..| .++..+.|..++..+.+++.+.+.|.
T Consensus 242 ~~~~~~m~~ad~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~ 315 (318)
T PF13528_consen 242 PDFAELMAAADLVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLE 315 (318)
T ss_pred HHHHHHHHhCCEEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHh
Confidence 89999999999999544 2347999999999999988755433 34445566676665555888888886
Q ss_pred HH
Q 023290 236 KL 237 (284)
Q Consensus 236 ~l 237 (284)
++
T Consensus 316 ~~ 317 (318)
T PF13528_consen 316 RL 317 (318)
T ss_pred cC
Confidence 53
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.42 E-value=6.4e-06 Score=69.62 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=103.6
Q ss_pred hcccCCCeEEEecCCccccchhhhhhhHHHHHHHHH-HHHh-CCCCCCeEEEEeccccc---cccHHHHHHHHHHHHHHH
Q 023290 39 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSR---GKGQDLFLHSFYESLELI 113 (284)
Q Consensus 39 ~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~i~~~g~~~~---~k~~~~~~~a~~~l~~~~ 113 (284)
.|.++++|.++.|..-.......+... ..+ ...+ +..+++++++..=+... ......+.+++..+.+.
T Consensus 140 ~G~~~~rI~~vG~~~~D~l~~~~~~~~------~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~- 212 (346)
T PF02350_consen 140 EGEPPERIFVVGNPGIDALLQNKEEIE------EKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAER- 212 (346)
T ss_dssp TT--GGGEEE---HHHHHHHHHHHTTC------C-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-
T ss_pred cCCCCCeEEEEChHHHHHHHHhHHHHh------hhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-
Confidence 588889999998765333222111110 001 1111 11334454444322222 23345666666665541
Q ss_pred HhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHH-
Q 023290 114 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI- 190 (284)
Q Consensus 114 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~- 190 (284)
+++.+++.....+ .....+.+...++ +++.++.+. .++..+++.|+++|.-| | .+.
T Consensus 213 -------~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS-------s-GI~e 271 (346)
T PF02350_consen 213 -------QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS-------S-GIQE 271 (346)
T ss_dssp -------TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS-------H-HHHH
T ss_pred -------CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC-------c-cHHH
Confidence 5788887765322 2455565555554 389888875 78899999999999665 4 566
Q ss_pred HHHhcCCCEEEcC-CCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 191 EAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 191 Eama~G~Pvi~~~-~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
||.++|+|+|.-. .+.-.+.+..+.+-+ +. .+ .+++.++|.+++.+++.+.++.. ....|.-...++++.
T Consensus 272 Ea~~lg~P~v~iR~~geRqe~r~~~~nvl-v~-~~--~~~I~~ai~~~l~~~~~~~~~~~-----~~npYgdG~as~rI~ 342 (346)
T PF02350_consen 272 EAPSLGKPVVNIRDSGERQEGRERGSNVL-VG-TD--PEAIIQAIEKALSDKDFYRKLKN-----RPNPYGDGNASERIV 342 (346)
T ss_dssp HGGGGT--EEECSSS-S-HHHHHTTSEEE-ET-SS--HHHHHHHHHHHHH-HHHHHHHHC-----S--TT-SS-HHHHHH
T ss_pred HHHHhCCeEEEecCCCCCHHHHhhcceEE-eC-CC--HHHHHHHHHHHHhChHHHHhhcc-----CCCCCCCCcHHHHHH
Confidence 9999999999884 444455554454444 66 44 89999999999988554444321 223466666677777
Q ss_pred HHHH
Q 023290 270 VVLK 273 (284)
Q Consensus 270 ~~~~ 273 (284)
++++
T Consensus 343 ~~Lk 346 (346)
T PF02350_consen 343 EILK 346 (346)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 6653
No 126
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.38 E-value=2.6e-05 Score=64.05 Aligned_cols=171 Identities=9% Similarity=0.048 Sum_probs=109.2
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+++.+|+.-.+-++..++..+++++.+... .++++++ .|.|. ....|.+++.+..+++--.+++..+..
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~~~---------~~~kIivPLsYg~-~n~~Yi~~V~~~~~~lF~~~~~~iL~e 252 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQFG---------DDVKIIVPLSYGA-NNQAYIQQVIQAGKELFGAENFQILTE 252 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHhcC---------CCeEEEEECCCCC-chHHHHHHHHHHHHHhcCccceeEhhh
Confidence 356677655566677888888877765321 5677655 33332 234588888888888755557776653
Q ss_pred -c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 161 -T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 161 -~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
. +|+.++++.||+.++.... -.|.|+.++ .+.+|+||+.+....+-..+.+...-+++..++.+...++++=.++
T Consensus 253 ~mpf~eYl~lL~~cDl~if~~~R-QQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql 330 (360)
T PF07429_consen 253 FMPFDEYLALLSRCDLGIFNHNR-QQGIGNICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQL 330 (360)
T ss_pred hCCHHHHHHHHHhCCEEEEeech-hhhHhHHHH-HHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHH
Confidence 2 7999999999999988763 677875544 9999999998876666555555444455554444455555554444
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 238 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
.. .-++.+ .|....+.+.+.+.+.-+.
T Consensus 331 ~~----------~dk~~i--aFf~pny~~~w~~~l~~~~ 357 (360)
T PF07429_consen 331 AN----------VDKQQI--AFFAPNYLQGWRQALRLAA 357 (360)
T ss_pred hh----------Ccccce--eeeCCchHHHHHHHHHHHh
Confidence 33 111112 2666677777777665443
No 127
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.37 E-value=2.4e-07 Score=70.09 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=65.4
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC--------cceeeecCCceeeecCCC
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGK 224 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~--------~~e~v~~~~~g~~~~~~d 224 (284)
.+|.++++.+++.++|..||++|.-+ .+.++.|++++|+|.|.-.... ....+.+...|..+...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~a------G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISHA------GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeCC------CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 58999999989999999999999533 3579999999999998766555 222333444566655554
Q ss_pred CChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 225 EGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
.+++.+.++|..++.++..+..+.+++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 447889999999999988766665543
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.31 E-value=4.2e-05 Score=66.11 Aligned_cols=157 Identities=16% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
.+++.+..|+.... ..+++.+..+.. + -+.++++...+. + . ..-++++++...++.
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~---~-----l~~~vi~~~~~~-~----------~-~~~~~p~n~~v~~~~- 292 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALA---D-----LDVRVIVSLGGA-R----------D-TLVNVPDNVIVADYV- 292 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHh---c-----CCcEEEEecccc-c----------c-ccccCCCceEEecCC-
Confidence 44555566766543 334433333322 1 567777776541 1 0 123567788888887
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
...+++..||++|+.. ..+++.||+..|+|+|+-..+ .+.+.+++-..|...+....+.+.++++|.+++
T Consensus 293 p~~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 293 PQLELLPRADAVIHHG------GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred CHHHHhhhcCEEEecC------CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh
Confidence 4556999999999644 245999999999999987544 344566677788888854445999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023290 239 THVERRLTMGKRGYERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (284)
.++..++... +.++.+.+.-.....++.+.+
T Consensus 367 ~~~~~~~~~~-~~~~~~~~~~g~~~~a~~le~ 397 (406)
T COG1819 367 ADDSYRRAAE-RLAEEFKEEDGPAKAADLLEE 397 (406)
T ss_pred cCHHHHHHHH-HHHHHhhhcccHHHHHHHHHH
Confidence 9987665543 334444444443334444433
No 129
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.31 E-value=3.4e-05 Score=70.68 Aligned_cols=212 Identities=15% Similarity=0.096 Sum_probs=136.8
Q ss_pred ccccccchhhHHHHHHHHHH-HhcccCCCeEEEecCCccccchhhh-------------------------------h--
Q 023290 18 AGAMIDSHVTAEYWKNRTRE-RLRIKMPDTYVVHLGNSKELMEVAE-------------------------------D-- 63 (284)
Q Consensus 18 ~~~i~~s~~~~~~~~~~~~~-~~~~~~~~i~vi~~g~~~~~~~~~~-------------------------------~-- 63 (284)
..+-.+|.-..+.+++.+.. .+...+.++.-+.||+.+..+-... +
T Consensus 419 ~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~ 498 (797)
T cd04300 419 HSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPA 498 (797)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHH
Confidence 33444455555555555233 4456678888899999886554100 0
Q ss_pred ---hh------HHHHHHHHHHHHhC--CCCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 023290 64 ---NV------AKRVLREHVRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSD 131 (284)
Q Consensus 64 ---~~------~~~~~~~~~r~~~~--~~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~ 131 (284)
.. .|.....-+++..| ++++.+..+++-|+...|...+ ++..+.++.+..........+..+++.|..
T Consensus 499 f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKA 578 (797)
T cd04300 499 FLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKA 578 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccC
Confidence 00 01111222333444 4677888999999999999888 777776665544332112235788888887
Q ss_pred CCCChHHHHHHH---HHHH----HcCCCC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 132 MNAQTKFESELR---NYVM----QKKIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 132 ~~~~~~~~~~l~---~~~~----~~~~~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.|.....+.-++ ..++ +..+.+ +|.|+... .-...++..||+....|....|..|+.-+-+|..|.+.+
T Consensus 579 aP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltl 658 (797)
T cd04300 579 APGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTI 658 (797)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceee
Confidence 666543222222 2222 112344 68888764 334457899999998877668999999999999999999
Q ss_pred EcCCCCcceeeec--CCceeeecCCCCChHHHHH
Q 023290 201 GTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 201 ~~~~~~~~e~v~~--~~~g~~~~~~d~~~~~~~~ 232 (284)
+|-.|...|+.++ +.|++++-.. .+++.+
T Consensus 659 gtlDGanvEi~e~vG~eN~fiFG~~---~~ev~~ 689 (797)
T cd04300 659 GTLDGANVEIAEEVGEENIFIFGLT---AEEVEA 689 (797)
T ss_pred ecccchhHHHHHHhCcCcEEEeCCC---HHHHHH
Confidence 9999999998876 7889988765 455443
No 130
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.30 E-value=3.1e-05 Score=68.85 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=69.3
Q ss_pred CCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecCCceeeecCC
Q 023290 150 KIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~ 223 (284)
+++++|.+.++.. ...++ ..++++|. -|...++.||+.+|+|+|+-... .+...++..+.|..++..
T Consensus 343 ~~p~Nv~i~~w~P-q~~lL~hp~v~~fIt------HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~ 415 (507)
T PHA03392 343 NLPANVLTQKWFP-QRAVLKHKNVKAFVT------QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTV 415 (507)
T ss_pred cCCCceEEecCCC-HHHHhcCCCCCEEEe------cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccC
Confidence 4567999998863 45677 45889984 22356999999999999987543 234444456678877776
Q ss_pred CCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 224 KEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
+.+.+++.++|.+++.|+..+++..+-+.
T Consensus 416 ~~t~~~l~~ai~~vl~~~~y~~~a~~ls~ 444 (507)
T PHA03392 416 TVSAAQLVLAIVDVIENPKYRKNLKELRH 444 (507)
T ss_pred CcCHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65689999999999999776655444333
No 131
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.27 E-value=3.5e-05 Score=70.34 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=110.1
Q ss_pred HHHHhC--CCCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC
Q 023290 74 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 150 (284)
Q Consensus 74 ~r~~~~--~~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 150 (284)
++++.| ++++.+..+++-|+...|...+ ++..+.++.+..........+..+++.|...|.... ...+.+++....
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIklI~~va 593 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHM-AKLIIKLINSVA 593 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHH-HHHHHHHHHHHH
Confidence 344444 4567788889999999999888 777777665544332111236788888887666543 333333333322
Q ss_pred --------CCC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec--CCc
Q 023290 151 --------IQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTT 216 (284)
Q Consensus 151 --------~~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--~~~ 216 (284)
+.+ +|.|+... .-...++..||+....|....|..|+.-+-+|..|.+.+++-.|...|+.++ +.|
T Consensus 594 ~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 594 EVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAEN 673 (794)
T ss_pred HHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCccc
Confidence 444 68888764 3344578999999988776689999999999999999999999999998876 788
Q ss_pred eeeecCCCCChHHHHHH
Q 023290 217 GLLHPVGKEGITPLAKN 233 (284)
Q Consensus 217 g~~~~~~d~~~~~~~~~ 233 (284)
++++-.. .+++.+.
T Consensus 674 ~fiFG~~---~~ev~~~ 687 (794)
T TIGR02093 674 IFIFGLT---VEEVEAL 687 (794)
T ss_pred EEEcCCC---HHHHHHH
Confidence 9888765 4555543
No 132
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=98.01 E-value=8.5e-05 Score=67.85 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=108.7
Q ss_pred HHHhC--CCCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc--
Q 023290 75 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 149 (284)
Q Consensus 75 r~~~~--~~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-- 149 (284)
+++.| ++++.+.++++-|+...|...+ ++..+.++.+..........+.++++.|...|.....+. +.+++...
T Consensus 518 ~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~-iIklI~~va~ 596 (798)
T PRK14985 518 KQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKN-IIFAINKVAE 596 (798)
T ss_pred HHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHH-HHHHHHHHHH
Confidence 34444 5667788889999999999888 777777665543322112245788888887766543232 22222222
Q ss_pred ------CCCC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec--CCce
Q 023290 150 ------KIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 217 (284)
Q Consensus 150 ------~~~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--~~~g 217 (284)
.+.+ +|.|+... .-...++..||+....|....|..|+.-+-+|..|.+.+++-.|...|+.++ +.||
T Consensus 597 ~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 597 VINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred HhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 2333 68888764 3334578999999988776789999999999999999999999999898865 7899
Q ss_pred eeecCCCCChHHHHHH
Q 023290 218 LLHPVGKEGITPLAKN 233 (284)
Q Consensus 218 ~~~~~~d~~~~~~~~~ 233 (284)
+.+-.. .+++.+.
T Consensus 677 f~fG~~---~~ev~~~ 689 (798)
T PRK14985 677 FIFGHT---VEQVKAL 689 (798)
T ss_pred EEeCCC---HHHHHHH
Confidence 998765 4544443
No 133
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.97 E-value=0.0006 Score=61.86 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=92.6
Q ss_pred HHHhC--CCCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHH---HHH-
Q 023290 75 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN---YVM- 147 (284)
Q Consensus 75 r~~~~--~~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~---~~~- 147 (284)
++..| ++++.+..+++-|+...|...+ ++..+..+.+..........++++++.|...|.+...+.-++. .++
T Consensus 433 ~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~ 512 (713)
T PF00343_consen 433 KKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEV 512 (713)
T ss_dssp HHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 34444 5677888899999999999777 4555555544333222233568899999877765433333332 222
Q ss_pred ---HcCCCC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec--CCcee
Q 023290 148 ---QKKIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGL 218 (284)
Q Consensus 148 ---~~~~~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--~~~g~ 218 (284)
+..+.+ +|.|+... .-...+++.|||.+..|+...|..|++-+-+|..|.+.+++-.|..-|+.+. ..|.+
T Consensus 513 in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~f 592 (713)
T PF00343_consen 513 INNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIF 592 (713)
T ss_dssp HCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSE
T ss_pred HhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEE
Confidence 123444 68888864 2334578999999988777789999999999999999999999998888754 45677
Q ss_pred eecCCCCChHHHHH
Q 023290 219 LHPVGKEGITPLAK 232 (284)
Q Consensus 219 ~~~~~d~~~~~~~~ 232 (284)
++-.. .+++.+
T Consensus 593 iFG~~---~~ev~~ 603 (713)
T PF00343_consen 593 IFGLT---AEEVEE 603 (713)
T ss_dssp EES-B---HHHHHH
T ss_pred EcCCC---HHHHHH
Confidence 76543 455443
No 134
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.93 E-value=0.00057 Score=57.20 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=100.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEE-ecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV-HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi-~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
..++.++.+++....-...+++ +|.. -++. ++|++...+-..-.+ ...+.+++|+++++.+++=.
T Consensus 121 Lt~Pla~~i~~P~~~~~~~~~~-----~G~~---~~i~~y~G~~E~ayl~~F~P------d~~vl~~lg~~~~~yIvvR~ 186 (335)
T PF04007_consen 121 LTLPLADVIITPEAIPKEFLKR-----FGAK---NQIRTYNGYKELAYLHPFKP------DPEVLKELGLDDEPYIVVRP 186 (335)
T ss_pred eehhcCCeeECCcccCHHHHHh-----cCCc---CCEEEECCeeeEEeecCCCC------ChhHHHHcCCCCCCEEEEEe
Confidence 3466788777766554443333 3433 2334 677765332211111 26678899987666555433
Q ss_pred ccccc--cccHHH-HHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHH
Q 023290 91 NSVSR--GKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 167 (284)
Q Consensus 91 g~~~~--~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (284)
..+.. .+|... +-+.+..+.+ . .+. ++++..... .....+.+ ++.+.+..-+...+
T Consensus 187 ~~~~A~y~~~~~~i~~~ii~~L~~----~----~~~-vV~ipr~~~--------~~~~~~~~----~~~i~~~~vd~~~L 245 (335)
T PF04007_consen 187 EAWKASYDNGKKSILPEIIEELEK----Y----GRN-VVIIPRYED--------QRELFEKY----GVIIPPEPVDGLDL 245 (335)
T ss_pred ccccCeeecCccchHHHHHHHHHh----h----Cce-EEEecCCcc--------hhhHHhcc----CccccCCCCCHHHH
Confidence 33221 223222 2233333322 1 333 566655321 11222332 25555554567789
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+..||++|. +| |+...||..+|+|.|++-.+ +...++. ..|.+....| ++++.+.+....
T Consensus 246 l~~a~l~Ig------~g-gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~--~~Gll~~~~~--~~ei~~~v~~~~ 308 (335)
T PF04007_consen 246 LYYADLVIG------GG-GTMAREAALLGTPAISCFPGKLLAVDKYLI--EKGLLYHSTD--PDEIVEYVRKNL 308 (335)
T ss_pred HHhcCEEEe------CC-cHHHHHHHHhCCCEEEecCCcchhHHHHHH--HCCCeEecCC--HHHHHHHHHHhh
Confidence 999999993 33 67889999999999987543 2334442 3488888888 888888665543
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.92 E-value=0.00055 Score=60.34 Aligned_cols=241 Identities=15% Similarity=0.161 Sum_probs=151.7
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCc--cccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEE
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS--KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 88 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~--~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~ 88 (284)
.....++|.+|+.+-..---+.+...+++ +..+....|.-... .+...+.. .-.|.+++++++.+++.
T Consensus 694 TtGa~~mDYiITDs~tsPl~~a~~ysEkL-v~lPh~ffi~d~~qk~~~~~dpn~---------kP~r~~y~Lp~d~vvf~ 763 (966)
T KOG4626|consen 694 TTGATFMDYIITDSVTSPLELAQQYSEKL-VYLPHCFFIGDHKQKNQDVLDPNN---------KPTRSQYGLPEDAVVFC 763 (966)
T ss_pred CCCCceeeEEeecccCChHHHHHHHHHHH-hhCCceEEecCcccccccccCCCC---------CCCCCCCCCCCCeEEEe
Confidence 34566788888887765444444333333 22233333322211 01111111 12567899998888876
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEeccc--cCHH
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVA 165 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~--~~~~ 165 (284)
.+..+ .|=-...++.|..+++++ |+-.|++.--+.- -...++..+.+.|++ ++|.|.+-. +|-.
T Consensus 764 ~FNqL--yKidP~~l~~W~~ILk~V-------PnS~LwllrfPa~----ge~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 764 NFNQL--YKIDPSTLQMWANILKRV-------PNSVLWLLRFPAV----GEQRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred echhh--hcCCHHHHHHHHHHHHhC-------CcceeEEEecccc----chHHHHHHHHHhCCCccceeeccccchHHHH
Confidence 66654 455677888888887755 7777777654321 237888899999985 568777653 4555
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceee-----ecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-----VNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v-----~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.-.+-+|+++-+.. ..| -.+-+|.+.+|+|+|+-.-.....-| ..-+.|-++-.. -++..+.-.++..|
T Consensus 831 rr~~LaDv~LDTpl--cnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~---~eEY~~iaV~Latd 904 (966)
T KOG4626|consen 831 RRGQLADVCLDTPL--CNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKN---REEYVQIAVRLATD 904 (966)
T ss_pred HhhhhhhhcccCcC--cCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhh---HHHHHHHHHHhhcC
Confidence 66788999997655 332 35678999999999987533222211 112233333332 57888888888888
Q ss_pred HHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 241 VERRLTMGKRGYERV--KEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
.+..+++..+-+..- ...|+-.+++..++++|.+..++..
T Consensus 905 ~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~ 946 (966)
T KOG4626|consen 905 KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYC 946 (966)
T ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhc
Confidence 888877766554432 2368899999999999999887643
No 136
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.89 E-value=0.00016 Score=60.82 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCcEEEeccc-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce------eeecCCceeeecCCC
Q 023290 152 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGK 224 (284)
Q Consensus 152 ~~~v~~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e------~v~~~~~g~~~~~~d 224 (284)
.+++.+.++. +++..+|..||++|..+- ..++.||+++|+|+|.....+..| .+.+.+.|..++..+
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 4588888877 589999999999996542 347999999999999988765433 344556777777665
Q ss_pred CChHHHHHHHHHHhhC
Q 023290 225 EGITPLAKNIVKLATH 240 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~ 240 (284)
. ++.+++...+.+
T Consensus 302 --~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 302 --L-RLLEAILDIRNM 314 (321)
T ss_pred --H-HHHHHHHhcccc
Confidence 4 445555444443
No 137
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.78 E-value=0.00039 Score=58.58 Aligned_cols=92 Identities=13% Similarity=0.004 Sum_probs=57.5
Q ss_pred CCeEEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
++.+.++.|+-.. .+-...+++++.++.+ ...++++.|... . +.+++...+. ..+.+.+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~---------~~~~~~i~~a~~-----~-~~i~~~~~~~---~~~~~~~- 227 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEG---------KEKILVVPSFFK-----G-KDLKEIYGDI---SEFEISY- 227 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhh---------cCcEEEEeCCCc-----H-HHHHHHHhcC---CCcEEec-
Confidence 4566667775432 2334445555555433 236777776642 2 4444444332 1344443
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+..++|+.||+++..| |.+.+|++.+|+|.|..
T Consensus 228 --~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 228 --DTHKALLEAEFAFICS-------GTATLEAALIGTPFVLA 260 (347)
T ss_pred --cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEEE
Confidence 6678999999999877 67888999999999985
No 138
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.75 E-value=0.013 Score=51.02 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCCcEEEec-c--ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-CCcceeeec-CCc
Q 023290 142 LRNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVN-GTT 216 (284)
Q Consensus 142 l~~~~~~~~~~~~v~~~~-~--~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~~~e~v~~-~~~ 216 (284)
.++..+.+.-+.+++++. . ..++..+++.||++|..-. .+++=|+++|+|+|+-.. .-...++++ +..
T Consensus 296 ~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~ 368 (426)
T PRK10017 296 ALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINYEHKSAGIMQQLGLP 368 (426)
T ss_pred HHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCc
Confidence 344444444334444432 1 2567789999999996554 367779999999997643 222333322 222
Q ss_pred eeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 023290 217 GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 255 (284)
Q Consensus 217 g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 255 (284)
.++++..+.+.+++.+.+.+++++.+..++....+.+..
T Consensus 369 ~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~ 407 (426)
T PRK10017 369 EMAIDIRHLLDGSLQAMVADTLGQLPALNARLAEAVSRE 407 (426)
T ss_pred cEEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 344555444478999999999998876655444433333
No 139
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.004 Score=57.29 Aligned_cols=192 Identities=16% Similarity=0.066 Sum_probs=127.5
Q ss_pred eEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEE
Q 023290 46 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 125 (284)
Q Consensus 46 i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l 125 (284)
+..+|.|+|+..+...........-..+++..+ .++.+++.+-++..-||...=+.++.+++.+.++.. ..+.+
T Consensus 241 v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~---~kVvl 314 (732)
T KOG1050|consen 241 VKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWI---DKVVL 314 (732)
T ss_pred eeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhhh---ceEEE
Confidence 455677777766554333222111234444444 356677788899999999988999999888777653 56667
Q ss_pred EEEecCCCCChHHHHHHHHH----HHHc----CC--CCcEEEecc-c--cCHHHHHhhccEEEEcCCCCcCccchhHHHH
Q 023290 126 VIIGSDMNAQTKFESELRNY----VMQK----KI--QDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 126 ~i~G~~~~~~~~~~~~l~~~----~~~~----~~--~~~v~~~~~-~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
+.+..+.....+..++++.. +++. +- ...|.++.. . .++.+++..+|+++..+. .+|..++.+|+
T Consensus 315 iqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e~ 392 (732)
T KOG1050|consen 315 IQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLEY 392 (732)
T ss_pred EEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhHH
Confidence 76665444333222233322 2221 11 123444332 2 688899999999999987 99999999999
Q ss_pred HhcC----CCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 193 MAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 193 ma~G----~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.+|. .+.|.+...|-....++ ..+++.+.+ .+.++.+|...+..++...++..
T Consensus 393 i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~~~r~ 449 (732)
T KOG1050|consen 393 ILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEERELRE 449 (732)
T ss_pred HHhhcccCCceEEeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHHhhcc
Confidence 9883 67777777776776644 478899998 89999999999986655444443
No 140
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.0023 Score=51.14 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=82.5
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCH
Q 023290 86 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 164 (284)
Q Consensus 86 ~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~ 164 (284)
+++..|.-++ |+ ..++.+..+.+ .++.+.+ +|++.+ ....+++.++.. +++.++-..+++
T Consensus 161 ilI~lGGsDp-k~--lt~kvl~~L~~---------~~~nl~iV~gs~~p----~l~~l~k~~~~~---~~i~~~~~~~dm 221 (318)
T COG3980 161 ILITLGGSDP-KN--LTLKVLAELEQ---------KNVNLHIVVGSSNP----TLKNLRKRAEKY---PNINLYIDTNDM 221 (318)
T ss_pred EEEEccCCCh-hh--hHHHHHHHhhc---------cCeeEEEEecCCCc----chhHHHHHHhhC---CCeeeEecchhH
Confidence 4445665554 33 34455555433 3444444 454332 345555555554 578888778899
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC----CCCcceeeecCCceeeecCC-CCChHHHHHHHHHHhh
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 239 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~----~~~~~e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~ 239 (284)
.++|..||+.|... |.++.||...|+|.++-. .......++. .|+....+ -.........+.++..
T Consensus 222 a~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~--lg~~~~l~~~l~~~~~~~~~~~i~~ 292 (318)
T COG3980 222 AELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLAENQIATAKEFEA--LGIIKQLGYHLKDLAKDYEILQIQK 292 (318)
T ss_pred HHHHHhcchheecc-------chHHHHHHHhcCCceEEeeeccHHHHHHHHHh--cCchhhccCCCchHHHHHHHHHhhh
Confidence 99999999999544 679999999999944332 2222222211 12222111 0015677788888888
Q ss_pred CHHHHHHHHHHHH
Q 023290 240 HVERRLTMGKRGY 252 (284)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (284)
|+..+..+....+
T Consensus 293 d~~~rk~l~~~~~ 305 (318)
T COG3980 293 DYARRKNLSFGSK 305 (318)
T ss_pred CHHHhhhhhhccc
Confidence 9988877765443
No 141
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.47 E-value=0.0017 Score=58.03 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
++..+++.+|++.. .-.+..++++....+ +.++ ++++.-.+.. .. .+++++....+.
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~~-----~~---------~l~~n~~~~~W~ 331 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGEP-----PE---------NLPKNVLIVKWL 331 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCSH-----GC---------HHHTTEEEESS-
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-cccccccccc-----cc---------cccceEEEeccc
Confidence 45567778888753 233333444433333 2255 6666544320 01 123478888886
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
++ .+++++..+-+.-+. . .-+++.||+.+|+|+|+-..- .+...+++.+.|...+..+.+.+++.++|.++
T Consensus 332 PQ-~~lL~hp~v~~fitH---g-G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 332 PQ-NDLLAHPRVKLFITH---G-GLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREV 406 (500)
T ss_dssp -H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHH
T ss_pred cc-hhhhhcccceeeeec---c-ccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHH
Confidence 43 467876655433332 2 246999999999999987543 34445556667888887776689999999999
Q ss_pred hhCHHHHHHH
Q 023290 238 ATHVERRLTM 247 (284)
Q Consensus 238 ~~~~~~~~~~ 247 (284)
++|+..++++
T Consensus 407 l~~~~y~~~a 416 (500)
T PF00201_consen 407 LENPSYKENA 416 (500)
T ss_dssp HHSHHHHHHH
T ss_pred HhhhHHHHHH
Confidence 9998654443
No 142
>PLN02670 transferase, transferring glycosyl groups
Probab=97.38 E-value=0.016 Score=51.13 Aligned_cols=116 Identities=11% Similarity=0.004 Sum_probs=68.6
Q ss_pred EEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecCCceeeecCCC----CC
Q 023290 155 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGK----EG 226 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~d----~~ 226 (284)
+.+.++..+ ..++++..+...-+. -| -++++||+++|+|+|+-... .+...+..-+.|+.++..+ .+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH---cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH---CG-WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec---CC-cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 556677633 357877777433332 22 35999999999999987533 3333444456676664311 24
Q ss_pred hHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVE--RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
.+++.++|.+++.+++ .+++-.++.++.+.+.=...++++.+.+.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 8999999999997642 222223333333444445555555555555443
No 143
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.37 E-value=0.015 Score=47.27 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=99.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCcc----ccchhhhhhhHHHHHHHHHHHHhCCCCCC-eE
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNED-LL 86 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~ 86 (284)
..++.++.++..+..-...+.+ +|..+.++ +-.||+-. ..|.+ ..++.+++|+.++. ++
T Consensus 122 l~~Pla~~ii~P~~~~~~~~~~-----~G~~p~~i-~~~~giae~~~v~~f~p----------d~evlkeLgl~~~~~yI 185 (346)
T COG1817 122 LTLPLADVIITPEAIDEEELLD-----FGADPNKI-SGYNGIAELANVYGFVP----------DPEVLKELGLEEGETYI 185 (346)
T ss_pred cchhhhhheecccccchHHHHH-----hCCCccce-ecccceeEEeecccCCC----------CHHHHHHcCCCCCCceE
Confidence 4456677666655544433222 45544443 33444321 11222 15677889998854 44
Q ss_pred EEEecccc-----ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 87 FAIINSVS-----RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 87 i~~~g~~~-----~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
++-.-.+. ..++.+.+.+++..+. +.-.+++... ...++..+.+. ++......
T Consensus 186 VmRpe~~~A~y~~g~~~~~~~~~li~~l~-----------k~giV~ipr~--------~~~~eife~~~---n~i~pk~~ 243 (346)
T COG1817 186 VMRPEPWGAHYDNGDRGISVLPDLIKELK-----------KYGIVLIPRE--------KEQAEIFEGYR---NIIIPKKA 243 (346)
T ss_pred EEeeccccceeeccccchhhHHHHHHHHH-----------hCcEEEecCc--------hhHHHHHhhhc---cccCCccc
Confidence 43332221 2345555555555552 2235555543 33344444431 22222223
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
-|-..++..|++++-.+ |.-.-||...|+|.|++.-| +..++. -+.|.++...| +.+..+...+.+
T Consensus 244 vD~l~Llyya~lvig~g-------gTMarEaAlLGtpaIs~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l 312 (346)
T COG1817 244 VDTLSLLYYATLVIGAG-------GTMAREAALLGTPAISCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNL 312 (346)
T ss_pred ccHHHHHhhhheeecCC-------chHHHHHHHhCCceEEecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHh
Confidence 45456888899988332 66788999999999998744 233333 24688998887 776666666666
Q ss_pred hCHH
Q 023290 239 THVE 242 (284)
Q Consensus 239 ~~~~ 242 (284)
.++.
T Consensus 313 ~~~~ 316 (346)
T COG1817 313 KYRR 316 (346)
T ss_pred hchh
Confidence 5543
No 144
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.31 E-value=0.027 Score=50.14 Aligned_cols=84 Identities=12% Similarity=-0.006 Sum_probs=53.0
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeec-CCceeee-------
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLH------- 220 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~-~~~g~~~------- 220 (284)
.++.+.++... ..++.++++...-+. .| -++++||+.+|+|+|+-...+ +...+.+ -..|+-+
T Consensus 345 ~g~~v~~w~PQ-~~iL~h~~v~~fvtH---~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~ 419 (482)
T PLN03007 345 KGLIIRGWAPQ-VLILDHQATGGFVTH---CG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVK 419 (482)
T ss_pred CCEEEecCCCH-HHHhccCccceeeec---Cc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccc
Confidence 47888888733 478888877333332 33 359999999999999875432 2222211 1233332
Q ss_pred -cCCCCChHHHHHHHHHHhhCH
Q 023290 221 -PVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 221 -~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+....+.+++++++.+++.++
T Consensus 420 ~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 420 VKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccCcccHHHHHHHHHHHhcCc
Confidence 122224889999999999875
No 145
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.30 E-value=0.016 Score=51.26 Aligned_cols=84 Identities=15% Similarity=-0.007 Sum_probs=54.2
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecC-CceeeecC-----
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPV----- 222 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~-~~g~~~~~----- 222 (284)
+++.+.++. .-..++.++++...-+ +.| -++++||+++|+|+|+-... .+...+.+. +.|+-+..
T Consensus 323 ~~~~v~~w~-pQ~~iL~h~~v~~fvt---HgG-~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLVVPWC-DQLKVLCHSSVGGFWT---HCG-WNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEEeccC-CHHHHhccCccceEEe---cCc-hhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 367777776 3446888888733333 222 45999999999999987543 333344332 35555531
Q ss_pred CCCChHHHHHHHHHHhhCH
Q 023290 223 GKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 223 ~d~~~~~~~~~i~~l~~~~ 241 (284)
+..+.+++++++.+++.++
T Consensus 398 ~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLE 416 (459)
T ss_pred CcCcHHHHHHHHHHHhcCC
Confidence 1124899999999999864
No 146
>PLN02562 UDP-glycosyltransferase
Probab=97.24 E-value=0.018 Score=50.71 Aligned_cols=88 Identities=13% Similarity=-0.014 Sum_probs=58.1
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceeeec-CCceeeecCCCCCh
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVN-GTTGLLHPVGKEGI 227 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~-~~~g~~~~~~d~~~ 227 (284)
+++.+.++. .-..+++++++...-+. .| -++++||+.+|+|+|+.... .+...+.+ -+.|+-+...+ .
T Consensus 328 ~~~~v~~w~-PQ~~iL~h~~v~~fvtH---~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~--~ 400 (448)
T PLN02562 328 KQGKVVSWA-PQLEVLKHQAVGCYLTH---CG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFG--Q 400 (448)
T ss_pred cCEEEEecC-CHHHHhCCCccceEEec---Cc-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCC--H
Confidence 577777776 44568888776443342 33 35999999999999987533 33444433 24455554333 8
Q ss_pred HHHHHHHHHHhhCHHHHHHH
Q 023290 228 TPLAKNIVKLATHVERRLTM 247 (284)
Q Consensus 228 ~~~~~~i~~l~~~~~~~~~~ 247 (284)
++++++|.+++.+++.+++.
T Consensus 401 ~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 99999999999887655443
No 147
>PLN02208 glycosyltransferase family protein
Probab=97.08 E-value=0.04 Score=48.39 Aligned_cols=94 Identities=7% Similarity=-0.127 Sum_probs=58.8
Q ss_pred cEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceeeec-CCceeeecCCC---C
Q 023290 154 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVN-GTTGLLHPVGK---E 225 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~-~~~g~~~~~~d---~ 225 (284)
++.+.++..+. +++++..+...-+. -| -++++||+++|+|+|+-... .+..++.+ -+.|+.++..+ .
T Consensus 312 g~~v~~W~PQ~-~iL~H~~v~~FvtH---cG-~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 386 (442)
T PLN02208 312 GVVWGGWVQQP-LILDHPSIGCFVNH---CG-PGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWF 386 (442)
T ss_pred CcEeeccCCHH-HHhcCCccCeEEcc---CC-chHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcC
Confidence 56666776333 57888877544443 23 35999999999999987533 23333222 34566664321 2
Q ss_pred ChHHHHHHHHHHhhCH-HHHHHHHHHHH
Q 023290 226 GITPLAKNIVKLATHV-ERRLTMGKRGY 252 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~-~~~~~~~~~~~ 252 (284)
+.+++.++|.+++.++ +..+++.++++
T Consensus 387 ~~~~l~~ai~~~m~~~~e~g~~~r~~~~ 414 (442)
T PLN02208 387 SKESLSNAIKSVMDKDSDLGKLVRSNHT 414 (442)
T ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4889999999999764 33444444444
No 148
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.05 E-value=0.078 Score=47.09 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=49.9
Q ss_pred CcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC----CCcceeee-cCCceeeecCC--
Q 023290 153 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVV-NGTTGLLHPVG-- 223 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~----~~~~e~v~-~~~~g~~~~~~-- 223 (284)
.++.+.++.. ...++.+ ++++|. +.| -++++||+++|+|+|+-.. ..+...+. .-+.|+.+..+
T Consensus 343 ~g~~v~~w~P-Q~~vL~h~~v~~fvt-----H~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAP-QVAILSHRAVGAFLT-----HCG-WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCC-HHHHhcCCCcCeEEe-----cCC-chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 3577777763 3567776 555663 223 3599999999999998643 33333332 22556655221
Q ss_pred -CCChHHHHHHHHHHhh
Q 023290 224 -KEGITPLAKNIVKLAT 239 (284)
Q Consensus 224 -d~~~~~~~~~i~~l~~ 239 (284)
..+.+++.+++.+++.
T Consensus 416 ~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 416 TVPDSDELARVFMESVS 432 (477)
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 1126889999998874
No 149
>PLN02210 UDP-glucosyl transferase
Probab=97.04 E-value=0.031 Score=49.34 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=53.0
Q ss_pred cEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceeeec-CCceeeecCC----C
Q 023290 154 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVN-GTTGLLHPVG----K 224 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~-~~~g~~~~~~----d 224 (284)
+..+.++.. -..+++++++...-+ +.|+ ++++||+.+|+|+|+-... .+...+.+ -+.|+.+... .
T Consensus 325 ~g~v~~w~P-Q~~iL~h~~vg~Fit---H~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSP-QEKILSHMAISCFVT---HCGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCC-HHHHhcCcCcCeEEe---eCCc-ccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 444557653 346888888433333 2333 4899999999999987543 23334433 4567665421 1
Q ss_pred CChHHHHHHHHHHhhCH
Q 023290 225 EGITPLAKNIVKLATHV 241 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~ 241 (284)
.+.+++++++.+++.++
T Consensus 400 ~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 400 LKVEEVERCIEAVTEGP 416 (456)
T ss_pred CCHHHHHHHHHHHhcCc
Confidence 24889999999999764
No 150
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.02 E-value=0.029 Score=49.40 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=53.9
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecC-CceeeecCCCCCh
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPVGKEGI 227 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~-~~g~~~~~~d~~~ 227 (284)
++..+.++. .-..++.+.++...-+ +.| -++++||+++|+|+|+-... .+...+.+. +.|+.+. +..+.
T Consensus 324 ~~g~v~~w~-PQ~~iL~h~~v~~fvt---H~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~ 397 (451)
T PLN02410 324 GRGYIVKWA-PQKEVLSHPAVGGFWS---HCG-WNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDR 397 (451)
T ss_pred CCeEEEccC-CHHHHhCCCccCeeee---cCc-hhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccH
Confidence 466667776 3335787766633223 233 35999999999999987533 333333333 5666653 23348
Q ss_pred HHHHHHHHHHhhCHH
Q 023290 228 TPLAKNIVKLATHVE 242 (284)
Q Consensus 228 ~~~~~~i~~l~~~~~ 242 (284)
++++++|.+++.+++
T Consensus 398 ~~v~~av~~lm~~~~ 412 (451)
T PLN02410 398 GAVERAVKRLMVEEE 412 (451)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999997653
No 151
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.99 E-value=0.011 Score=48.24 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCCeEEEEecccccc-------ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCc
Q 023290 82 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 154 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~-------k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (284)
.++.+++++.+.... .....+++.+..+.+ ..|+.++++--.+........ ....+.....+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 345566677776653 234555666665554 237788777554311000011 22222211235
Q ss_pred EEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 155 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
+.++...-++..++..||.++.-+ +.+.+||+.+|+||++...+
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEecCc
Confidence 666655568999999999998655 46999999999999997544
No 152
>PLN03004 UDP-glycosyltransferase
Probab=96.92 E-value=0.037 Score=48.63 Aligned_cols=85 Identities=11% Similarity=-0.005 Sum_probs=57.4
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC----CCcceeeec-CCceeeecCC---C
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVN-GTTGLLHPVG---K 224 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~----~~~~e~v~~-~~~g~~~~~~---d 224 (284)
.++.+.++.. -..+++++++...-+. .| -++++||+++|+|+|+... ..+...+.+ -+.|+.++.. .
T Consensus 334 ~g~~v~~W~P-Q~~iL~H~~v~~FvTH---~G-~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAP-QVPVLNHKAVGGFVTH---CG-WNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCC-HHHHhCCCccceEecc---Cc-chHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 3677777763 3358999998443342 22 3599999999999998753 334444433 3567766532 1
Q ss_pred CChHHHHHHHHHHhhCHH
Q 023290 225 EGITPLAKNIVKLATHVE 242 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~~ 242 (284)
.+.++++++|.+++.+++
T Consensus 409 ~~~e~l~~av~~vm~~~~ 426 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECP 426 (451)
T ss_pred cCHHHHHHHHHHHhcCHH
Confidence 248999999999998754
No 153
>PLN00414 glycosyltransferase family protein
Probab=96.86 E-value=0.09 Score=46.26 Aligned_cols=92 Identities=8% Similarity=-0.091 Sum_probs=57.0
Q ss_pred EEEeccccCHHHHHhhccE--EEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceee-ecCCceeeecCC---C
Q 023290 155 VHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIV-VNGTTGLLHPVG---K 224 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~--~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v-~~~~~g~~~~~~---d 224 (284)
..+.++.. -..+++++.+ +|.. -| -++++||+++|+|+|+-... .+...+ +.-+.|+.+... .
T Consensus 314 ~vv~~w~P-Q~~vL~h~~v~~fvtH-----~G-~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVE-QPLILSHPSVGCFVNH-----CG-FGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCC-HHHHhcCCccceEEec-----Cc-hhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 44456653 3367877755 5532 22 36999999999999987533 233344 234566666321 1
Q ss_pred CChHHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 023290 225 EGITPLAKNIVKLATHV-ERRLTMGKRGYE 253 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~ 253 (284)
.+.+++++++.+++.++ +..+++.+++++
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 24899999999999764 444455555443
No 154
>PLN02764 glycosyltransferase family protein
Probab=96.76 E-value=0.12 Score=45.36 Aligned_cols=119 Identities=10% Similarity=-0.092 Sum_probs=66.0
Q ss_pred cEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceeee-cCCceeeecCC---CC
Q 023290 154 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVV-NGTTGLLHPVG---KE 225 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~-~~~~g~~~~~~---d~ 225 (284)
.+...++. .-.+++++..+...-+. .| -++++||+.+|+|+|+-... .+...+. .-..|+.+... +.
T Consensus 318 G~v~~~W~-PQ~~vL~h~~v~~FvtH---~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~ 392 (453)
T PLN02764 318 GVVWGGWV-QQPLILSHPSVGCFVSH---CG-FGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWF 392 (453)
T ss_pred CcEEeCCC-CHHHHhcCcccCeEEec---CC-chHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCcc
Confidence 35555665 33357777555322232 22 46999999999999987543 2333442 23445544221 22
Q ss_pred ChHHHHHHHHHHhhCH-HHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 226 GITPLAKNIVKLATHV-ERRLTMGKRGY---ERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+.+++.+++.+++.++ +..+++.++++ +.+.+-=|.....+++.+.+.+..+
T Consensus 393 ~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 393 SKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVS 448 (453)
T ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999764 33444444443 3343333444444444444444443
No 155
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.75 E-value=0.091 Score=46.70 Aligned_cols=81 Identities=12% Similarity=-0.045 Sum_probs=50.6
Q ss_pred cEEEeccccCHHHHHhhcc--EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Cccee-eecCCceeeecCC---
Q 023290 154 RVHFVNKTLTVAPYLAAID--VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEI-VVNGTTGLLHPVG--- 223 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad--~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~-v~~~~~g~~~~~~--- 223 (284)
+..+.++. .-..++++.. ++|. +.| -++++||+++|+|+|+-... .+... ++.-+.|+.+...
T Consensus 341 rg~v~~w~-PQ~~iL~h~~vg~fvt-----H~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWA-PQVEILAHKAIGGFVS-----HCG-WNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccC-CHHHHhcCcccCeEEe-----eCC-cccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 44556765 4446787755 4552 233 34899999999999986433 23222 3334456655321
Q ss_pred ----CCChHHHHHHHHHHhhCH
Q 023290 224 ----KEGITPLAKNIVKLATHV 241 (284)
Q Consensus 224 ----d~~~~~~~~~i~~l~~~~ 241 (284)
..+.++++++|.+++.+.
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcCC
Confidence 123889999999999754
No 156
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.71 E-value=0.15 Score=45.44 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=52.1
Q ss_pred CcEEEeccccCHHHHHhhcc--EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccc-eeeecCCceeeecC---
Q 023290 153 DRVHFVNKTLTVAPYLAAID--VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTT-EIVVNGTTGLLHPV--- 222 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad--~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~-e~v~~~~~g~~~~~--- 222 (284)
+++.+.++.. -..++++.. ++| + +.| -++++||+.+|+|+|+-... .+. ..++.-+.|+.++.
T Consensus 342 ~~g~v~~W~P-Q~~iL~H~~v~~Fv--t---H~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAP-QVAVLAKPAIGGFV--T---HCG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCC-HHHHhCCcccCccc--c---cCc-cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 4666667753 345774444 455 3 233 35999999999999987533 232 22334345655531
Q ss_pred --------CCCChHHHHHHHHHHhh-CHHHH
Q 023290 223 --------GKEGITPLAKNIVKLAT-HVERR 244 (284)
Q Consensus 223 --------~d~~~~~~~~~i~~l~~-~~~~~ 244 (284)
...+.+++.++|.+++. +++.+
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r 445 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQDSDVR 445 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCCHHHH
Confidence 12248899999999996 54433
No 157
>PLN02555 limonoid glucosyltransferase
Probab=96.66 E-value=0.17 Score=45.01 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecC-Cceeeec---
Q 023290 152 QDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHP--- 221 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~-~~g~~~~--- 221 (284)
.+++.+.++... ..++. .+.++|. +.| -++++||+.+|+|+|+.... .+..++.+. +.|+.+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fvt-----H~G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFVT-----HCG-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEEe-----cCC-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 356777777633 45674 4555663 222 45999999999999987543 233333333 5565552
Q ss_pred --CCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 222 --VGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 222 --~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
.+..+.+++.++|.+++.+++ -+++.++++
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~ 440 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEK-AAELKQNAL 440 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCch-HHHHHHHHH
Confidence 112237899999999997532 233444433
No 158
>PLN02173 UDP-glucosyl transferase family protein
Probab=96.55 E-value=0.16 Score=44.70 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=55.3
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecC-CceeeecCCC---
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPVGK--- 224 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~-~~g~~~~~~d--- 224 (284)
+++.+.++.. -..++++.++...-+. -| .++++||+++|+|+|+-... .+...+.+. ..|+-+...+
T Consensus 317 ~~~~i~~W~P-Q~~iL~H~~v~~FvtH---cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSP-QLQVLSNKAIGCFMTH---CG-WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCC-HHHHhCCCccceEEec---Cc-cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 4678788864 3468888875444442 22 46999999999999987533 333444332 4565543211
Q ss_pred -CChHHHHHHHHHHhhCH
Q 023290 225 -EGITPLAKNIVKLATHV 241 (284)
Q Consensus 225 -~~~~~~~~~i~~l~~~~ 241 (284)
.+.+++++++.+++.++
T Consensus 392 ~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGE 409 (449)
T ss_pred cccHHHHHHHHHHHhcCC
Confidence 13799999999999764
No 159
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=96.36 E-value=0.33 Score=43.12 Aligned_cols=82 Identities=10% Similarity=-0.100 Sum_probs=54.0
Q ss_pred cEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceee-ecCCceeeecCC--CCC
Q 023290 154 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIV-VNGTTGLLHPVG--KEG 226 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v-~~~~~g~~~~~~--d~~ 226 (284)
++.+.++.. -..++.+..+...-+. .| -++++||+.+|+|+|+-... .+...+ +.-+.|+.++.. ..+
T Consensus 339 g~vv~~W~P-Q~~iL~h~~vg~FitH---~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAP-QAEILAHQAVGGFLTH---CG-WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCC-HHHHhCCcccCeeEec---Cc-hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 577777763 3467888877333332 22 35999999999999987543 333344 244556666431 234
Q ss_pred hHHHHHHHHHHhhC
Q 023290 227 ITPLAKNIVKLATH 240 (284)
Q Consensus 227 ~~~~~~~i~~l~~~ 240 (284)
.++++++|.+++.+
T Consensus 414 ~~~l~~av~~vm~~ 427 (481)
T PLN02992 414 RSKIEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999975
No 160
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.36 E-value=0.088 Score=44.48 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=64.0
Q ss_pred HHHHHHhCCCC-CCeEEEEeccc-cccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHH
Q 023290 72 EHVRESLGVRN-EDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 147 (284)
Q Consensus 72 ~~~r~~~~~~~-~~~~i~~~g~~-~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~ 147 (284)
..+...+++.. +.++++..|.- .+.|.+. .+.+.+..+.+ .+.+++++|++. ..+..+....
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHHH
Confidence 34456666654 45666666653 3555543 45554444432 457888888753 2333333333
Q ss_pred HcCCCCcE-EEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 148 QKKIQDRV-HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 148 ~~~~~~~v-~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
..+ ..+ .+.|.. .++..+++.||++|.+-. ..+-=|.|+|+|+|+-
T Consensus 228 ~~~--~~~~~l~g~~sL~el~ali~~a~l~I~~DS-------Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP--GELRNLAGETSLDEAVDLIALAKAVVTNDS-------GLMHVAAALNRPLVAL 276 (334)
T ss_pred hCC--cccccCCCCCCHHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEE
Confidence 321 222 345543 788999999999996543 2444588999999974
No 161
>PLN00164 glucosyltransferase; Provisional
Probab=96.35 E-value=0.33 Score=43.21 Aligned_cols=82 Identities=10% Similarity=-0.048 Sum_probs=51.7
Q ss_pred EEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC----CCcceee-ecCCceeeecCC-----C
Q 023290 155 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIV-VNGTTGLLHPVG-----K 224 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~----~~~~e~v-~~~~~g~~~~~~-----d 224 (284)
+.+.++. .-..++.++++...-+ +.|+ ++++||+++|+|+|+-.. ..+...+ +.-+.|+.+... .
T Consensus 341 ~~v~~w~-PQ~~iL~h~~vg~fvt---H~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~ 415 (480)
T PLN00164 341 LVWPTWA-PQKEILAHAAVGGFVT---HCGW-NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNF 415 (480)
T ss_pred eEEeecC-CHHHHhcCcccCeEEe---eccc-chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCc
Confidence 5555665 3446788888643333 2333 499999999999998643 3333333 333556655321 1
Q ss_pred CChHHHHHHHHHHhhCH
Q 023290 225 EGITPLAKNIVKLATHV 241 (284)
Q Consensus 225 ~~~~~~~~~i~~l~~~~ 241 (284)
.+.++++++|.+++.++
T Consensus 416 ~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 416 VEAAELERAVRSLMGGG 432 (480)
T ss_pred CcHHHHHHHHHHHhcCC
Confidence 13799999999999764
No 162
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.35 E-value=0.049 Score=44.71 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=58.8
Q ss_pred eEEEEeccccccccH--HHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 85 LLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 85 ~~i~~~g~~~~~k~~--~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
.+++..|+-.+.|.. +.+.+.+..+.+ .+++++++|+.. ..+..+.+.+..+....+.+.+..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~~-----e~~~~~~i~~~~~~~~~~~~~~~~~ 188 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGPA-----ERELAEEIAAALGGPRVVNLAGKTS 188 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEechh-----hHHHHHHHHHhcCCCccccCcCCCC
Confidence 455556655554543 445555554433 468888988753 334444444443222234445543
Q ss_pred -cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 -~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++..+++.||++|.+-. | .+--|.++|+|+|+--
T Consensus 189 l~e~~~li~~~~l~I~~Ds------g-~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 189 LRELAALLARADLVVTNDS------G-PMHLAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEEEE
Confidence 788999999999997642 2 4445679999999753
No 163
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.33 E-value=0.13 Score=42.81 Aligned_cols=140 Identities=12% Similarity=0.159 Sum_probs=85.4
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
...+++.+|. -.-|.+.+ +++......+... ...-+++.|...|. ...+++.......++|.+..+..
T Consensus 219 ~~~Ilvs~GG--G~dG~eLi-~~~l~A~~~l~~l----~~~~~ivtGP~MP~-----~~r~~l~~~A~~~p~i~I~~f~~ 286 (400)
T COG4671 219 GFDILVSVGG--GADGAELI-ETALAAAQLLAGL----NHKWLIVTGPFMPE-----AQRQKLLASAPKRPHISIFEFRN 286 (400)
T ss_pred cceEEEecCC--ChhhHHHH-HHHHHHhhhCCCC----CcceEEEeCCCCCH-----HHHHHHHHhcccCCCeEEEEhhh
Confidence 3455666664 23454444 4433333332211 12234556654432 33444444444456899999999
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce--eeec---CCcee--eecCCCCChHHHHHHHH
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE--IVVN---GTTGL--LHPVGKEGITPLAKNIV 235 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e--~v~~---~~~g~--~~~~~d~~~~~~~~~i~ 235 (284)
++..++..|+.+|.-+ |+ +++.|=+++|||.+.-.....++ .++. .+-|+ +..+.+..++.++++|.
T Consensus 287 ~~~~ll~gA~~vVSm~-----GY-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~ 360 (400)
T COG4671 287 DFESLLAGARLVVSMG-----GY-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALK 360 (400)
T ss_pred hHHHHHHhhheeeecc-----cc-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHH
Confidence 9999999999999543 22 58899999999999876554443 1111 12232 45556666999999999
Q ss_pred HHhhC
Q 023290 236 KLATH 240 (284)
Q Consensus 236 ~l~~~ 240 (284)
.++..
T Consensus 361 ~~l~~ 365 (400)
T COG4671 361 AALAR 365 (400)
T ss_pred hcccC
Confidence 98874
No 164
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.25 E-value=0.57 Score=39.15 Aligned_cols=120 Identities=18% Similarity=0.086 Sum_probs=66.4
Q ss_pred HHHHHhCCCCCCeEEEEecccccc--ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC
Q 023290 73 HVRESLGVRNEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 150 (284)
Q Consensus 73 ~~r~~~~~~~~~~~i~~~g~~~~~--k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 150 (284)
.+..+++-.+...+.+.+|.-+.. -+.+..-+.+.++...... ....+.|..+.- -..+....+++..+
T Consensus 136 ~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRR-Tp~~~~~~L~~~~~--- 206 (311)
T PF06258_consen 136 AWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRR-TPPEAEAALRELLK--- 206 (311)
T ss_pred hhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCC-CcHHHHHHHHHhhc---
Confidence 334445544455555567754432 2233222233333333322 346777777632 11123333433333
Q ss_pred CCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 151 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 151 ~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
-...+.+.+.. .-+..+|..||.++++..+ -.-+.||.+.|+||.+....+
T Consensus 207 ~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DS-----vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 207 DNPGVYIWDGTGENPYLGFLAAADAIVVTEDS-----VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred CCCceEEecCCCCCcHHHHHHhCCEEEEcCcc-----HHHHHHHHHcCCCEEEecCCC
Confidence 23456444432 4578999999999988651 235779999999999987665
No 165
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=96.21 E-value=0.11 Score=37.56 Aligned_cols=101 Identities=10% Similarity=0.144 Sum_probs=61.6
Q ss_pred eEEEEeccccccccHHHHHHHH--HHHHHHHHhhccCCCCeEEE-EEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 85 LLFAIINSVSRGKGQDLFLHSF--YESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 85 ~~i~~~g~~~~~k~~~~~~~a~--~~l~~~~~~~~~~~~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
-+++.+|+-. ++.++.++ ....+.+.+. .-.+++ -+|.+.... .+......+..++ .|....+.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~----G~~kLiiQ~Grg~~~~---~d~~~~~~k~~gl--~id~y~f~ 71 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKR----GFTKLIIQIGRGQPFF---GDPIDLIRKNGGL--TIDGYDFS 71 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHc----CccEEEEEecCCccCC---CCHHHhhcccCCe--EEEEEecC
Confidence 3566777644 67777655 2344555543 333444 467763321 1223322233333 35555566
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 204 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~ 204 (284)
.++.+.++.||++|.-. ...+++|-+..|+|.|+.-+
T Consensus 72 psl~e~I~~AdlVIsHA------GaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 72 PSLTEDIRSADLVISHA------GAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred ccHHHHHhhccEEEecC------CcchHHHHHHcCCCEEEEeC
Confidence 89999999999999433 24599999999999997643
No 166
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.06 E-value=0.37 Score=40.49 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=55.6
Q ss_pred CCeEEEEeccccccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
.+++++..|.-.+.|.+. .+.+.+..+.+ .+.++++.|+++. ..+..++..+.. ..+.+.|.
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~~----e~~~~~~i~~~~---~~~~l~g~ 241 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAEH----EEQRAKRLAEGF---PYVEVLPK 241 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCHH----HHHHHHHHHccC---CcceecCC
Confidence 345544555544445433 44444444432 4567777633321 223333333321 24556665
Q ss_pred c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 161 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 161 ~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
. .++..+++.||++|.+-. ..+-=|.|+|+|+|+-
T Consensus 242 ~sL~elaali~~a~l~I~nDS-------Gp~HlA~A~g~p~val 278 (322)
T PRK10964 242 LSLEQVARVLAGAKAVVSVDT-------GLSHLTAALDRPNITL 278 (322)
T ss_pred CCHHHHHHHHHhCCEEEecCC-------cHHHHHHHhCCCEEEE
Confidence 3 788899999999997543 2455589999999975
No 167
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.99 E-value=0.096 Score=44.63 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=60.3
Q ss_pred CCeEEEEeccccccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+.++++.+|.-.+.|.+. .+.+.+..+.+ .+.+++++|+.... .....++..+.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA---------RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCC
Confidence 456677788766666644 44444444432 46788888764311 12222333332222223445565
Q ss_pred c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 161 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 161 ~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
. .++..+++.||++|..-. ..+-=|.|+|+|+|+-
T Consensus 251 ~sL~el~ali~~a~l~v~nDS-------Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS-------APAHIAAAVNTPLICL 287 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEEE
Confidence 3 788999999999996542 2444588999999975
No 168
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.91 E-value=0.34 Score=40.64 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=57.9
Q ss_pred CCeEEEEeccccccccH--HHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~--~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
++.+++..|.-.+.|.+ +.+.+.+..+.+ .+.+++++|+++. ..+..+...+..+ +..+.|.
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~~----e~~~~~~i~~~~~---~~~l~g~ 242 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGNDA----EKQRAERIAEALP---GAVVLPK 242 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCHH----HHHHHHHHHhhCC---CCeecCC
Confidence 45566677765566664 344444444432 4677787754431 2333444444332 2244564
Q ss_pred c--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 161 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 161 ~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
. .++..+++.||++|.+-. ..+-=|.|+|+|+|+-
T Consensus 243 ~sL~el~ali~~a~l~I~~DS-------gp~HlAaa~g~P~i~l 279 (319)
T TIGR02193 243 MSLAEVAALLAGADAVVGVDT-------GLTHLAAALDKPTVTL 279 (319)
T ss_pred CCHHHHHHHHHcCCEEEeCCC-------hHHHHHHHcCCCEEEE
Confidence 3 688899999999996543 2444578999999975
No 169
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.81 E-value=0.22 Score=42.33 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=62.6
Q ss_pred HHHHhCCC-CCCeEEEEeccc-cccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc
Q 023290 74 VRESLGVR-NEDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 149 (284)
Q Consensus 74 ~r~~~~~~-~~~~~i~~~g~~-~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 149 (284)
+...+++. ++.++++..|.- .+.|.+. .+.+.+..+.+ .+++++++|+.. ..+..++..+..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~~-----e~~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSAK-----DHEAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCHH-----hHHHHHHHHHhc
Confidence 44455543 345666677764 2555533 44444444432 567888888753 233334443333
Q ss_pred CCC--Cc-EEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 150 KIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 150 ~~~--~~-v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+.. .+ +.+.|.. .++..+++.||++|.+-. ..+-=|.|.|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-------Gp~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-------GLMHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-------hHHHHHHHhCCCEEEE
Confidence 211 12 3444543 788899999999996542 2444589999999974
No 170
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.62 E-value=0.86 Score=40.28 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=53.1
Q ss_pred CCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecC-CceeeecC--CC
Q 023290 152 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPV--GK 224 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~-~~g~~~~~--~d 224 (284)
+++..+.++.. -.+++++.++...-+. .| -++++||+.+|+|+|+-... .+...+.+. +.|+-+.. .+
T Consensus 326 ~~~g~v~~W~P-Q~~iL~h~~vg~fvtH---~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCS-QIEVLRHRAVGCFVTH---CG-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCC-HHHHhCCcccceEEee---CC-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 34666667764 3468888887444442 22 35999999999999987532 233333331 23444321 11
Q ss_pred -CChHHHHHHHHHHhhCH
Q 023290 225 -EGITPLAKNIVKLATHV 241 (284)
Q Consensus 225 -~~~~~~~~~i~~l~~~~ 241 (284)
.+.+++++++.+++.++
T Consensus 401 ~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 13789999999999754
No 171
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.56 E-value=0.34 Score=41.14 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=58.7
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
+.++++..|.-.+.|.+. .+-|.++.+.+.+ .+..++++|++... .....++.....+-...+.+.|..
T Consensus 181 ~~~i~i~p~a~~~~K~Wp--~e~~~~l~~~l~~-----~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g~~s 250 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWD--NDRFSALIDALHA-----RGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAGKLT 250 (344)
T ss_pred CCEEEEeCCCCccccCCC--HHHHHHHHHHHHh-----CCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCCCCC
Confidence 455666777655555543 1333333333322 45778888864311 112233333332222223355553
Q ss_pred -cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 162 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 162 -~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
.++..+++.||++|.+-. ..+-=|.|+|+|+|+-
T Consensus 251 L~el~ali~~a~l~Vs~DS-------Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 251 LPQLAALIDHARLFIGVDS-------VPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEEE
Confidence 788999999999996542 2455589999999975
No 172
>PLN02207 UDP-glycosyltransferase
Probab=95.54 E-value=0.97 Score=40.12 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=49.0
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----Ccceeeec-CCceeeec------
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVN-GTTGLLHP------ 221 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~-~~~g~~~~------ 221 (284)
++..+.++..+ .+++++..+...-+. -| -++++||+.+|+|+|+-... .+..++.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH---~G-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSH---CG-WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeec---Cc-cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 45666677532 356777666333332 22 25899999999999987533 33333222 34555331
Q ss_pred CCC-CChHHHHHHHHHHhh
Q 023290 222 VGK-EGITPLAKNIVKLAT 239 (284)
Q Consensus 222 ~~d-~~~~~~~~~i~~l~~ 239 (284)
..+ .+.+++.++|.+++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 111 137899999999996
No 173
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.50 E-value=0.12 Score=41.50 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
++..+++.+|.-.+.|.+.. +-+.++.+.+.+ ..+.++++|+.... ..+......+... ...+.+.+..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~ 172 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGPEEQ---EKEIADQIAAGLQ-NPVINLAGKT 172 (247)
T ss_dssp TSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SSHHH---HHHHHHHHHTTHT-TTTEEETTTS
T ss_pred cCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccchHH---HHHHHHHHHHhcc-cceEeecCCC
Confidence 45677777887777776544 444555555543 33788888875310 1222222332221 1146666654
Q ss_pred --cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 162 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 162 --~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
.++..+++.||++|.+-. ..+-=|.|+|+|+|+-
T Consensus 173 ~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 173 SLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVAL 208 (247)
T ss_dssp -HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEEE
T ss_pred CHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEEE
Confidence 778899999999997643 2455589999999986
No 174
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.19 E-value=1.1 Score=40.21 Aligned_cols=92 Identities=12% Similarity=0.005 Sum_probs=51.5
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC----CCCcceeeecCCceeeecCCCCChH
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNGTTGLLHPVGKEGIT 228 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~----~~~~~e~v~~~~~g~~~~~~d~~~~ 228 (284)
.+|...++.++..-++.+..+...-+ +.|++ +++|++.+|+|+|+.. ..-+...+.+...+.+....+....
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~FvT---HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~ 410 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFVT---HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSE 410 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEEE---CCccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcH
Confidence 47888888755543333332322223 34444 5699999999999542 2233333333333333333332233
Q ss_pred HHHHHHHHHhhCHHHHHHHH
Q 023290 229 PLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 229 ~~~~~i~~l~~~~~~~~~~~ 248 (284)
.+.+++..++.+++..+...
T Consensus 411 ~~~~~~~~il~~~~y~~~~~ 430 (496)
T KOG1192|consen 411 ELLEAIKEILENEEYKEAAK 430 (496)
T ss_pred HHHHHHHHHHcChHHHHHHH
Confidence 38888888888876554433
No 175
>PLN02534 UDP-glycosyltransferase
Probab=95.14 E-value=2.3 Score=38.06 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=48.9
Q ss_pred CcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeee-cCCceeeec------
Q 023290 153 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHP------ 221 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~-~~~~g~~~~------ 221 (284)
.++.+.++... ..++.++++...-+. . ..++++||+++|+|+|+-...+ +...+. .-+.|+-+.
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvtH---~-G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLTH---C-GWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEec---C-ccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 35666677643 568888888433332 2 2469999999999999875432 111111 112222221
Q ss_pred C------C-CCChHHHHHHHHHHhh
Q 023290 222 V------G-KEGITPLAKNIVKLAT 239 (284)
Q Consensus 222 ~------~-d~~~~~~~~~i~~l~~ 239 (284)
. + ..+.+++++++.+++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 0 0127899999999996
No 176
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=94.80 E-value=0.27 Score=43.76 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=67.0
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc-----ceeeec-------------------CCce
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-----TEIVVN-------------------GTTG 217 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~-----~e~v~~-------------------~~~g 217 (284)
.++..+++.+.++|-...- +| |-+.+||+++|+|.|-+..... .+++++ .-.-
T Consensus 333 ~ef~~lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhV 409 (559)
T PF15024_consen 333 DEFQQLLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHV 409 (559)
T ss_pred HHHHHHHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeE
Confidence 6899999999999955432 33 4589999999999997753211 111111 1123
Q ss_pred eeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 218 LLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 218 ~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+.++.+| .+++.++|.+++.++- .-++--.|+.+.+.+++..+++.
T Consensus 410 ytVd~~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 410 YTVDINN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred EEEcCCC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 5566666 8999999999987642 12344468888888888776653
No 177
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.28 E-value=0.21 Score=33.74 Aligned_cols=80 Identities=9% Similarity=0.201 Sum_probs=51.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc----c-c--CHHHHHhhccEEEEcCCC-CcCccchhHHHHHhcC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----T-L--TVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQ 196 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~----~-~--~~~~~~~~ad~~~~ps~~-~~e~~~~~~~Eama~G 196 (284)
++++|+... ....+++.+++.|.. ..++|. . . .+...+..||++|++... .....-.+--+|-..|
T Consensus 2 vliVGG~~~----~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGRED----RERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCcc----cHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcC
Confidence 567776221 678888899998864 333322 1 2 378889999999988651 0111222333778889
Q ss_pred CCEEEcCCCCccee
Q 023290 197 LPVLGTAAGGTTEI 210 (284)
Q Consensus 197 ~Pvi~~~~~~~~e~ 210 (284)
+|++.+...+...+
T Consensus 76 ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 76 IPIIYSRSRGVSSL 89 (97)
T ss_pred CcEEEECCCCHHHH
Confidence 99999986665443
No 178
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.23 E-value=0.6 Score=39.51 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=62.6
Q ss_pred CeEEEEec-cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 84 DLLFAIIN-SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 84 ~~~i~~~g-~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
..+++..| +-...|.+.. +-+.++.+.+.+ ...+++++|+.. ..+..+++.+..+. .+.+.|..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~--e~~~~l~~~l~~-----~~~~Vvl~g~~~-----e~e~~~~i~~~~~~--~~~l~~k~s 241 (334)
T COG0859 176 PYIVINPGASRGSAKRWPL--EHYAELAELLIA-----KGYQVVLFGGPD-----EEERAEEIAKGLPN--AVILAGKTS 241 (334)
T ss_pred CeEEEeccccccccCCCCH--HHHHHHHHHHHH-----CCCEEEEecChH-----HHHHHHHHHHhcCC--ccccCCCCC
Confidence 56666777 5546666442 334444444443 347888988762 45555556655432 22255554
Q ss_pred -cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 -~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++..++..||++|.+.. | .+-=|.|.|+|+|+--
T Consensus 242 L~e~~~li~~a~l~I~~DS------g-~~HlAaA~~~P~I~iy 277 (334)
T COG0859 242 LEELAALIAGADLVIGNDS------G-PMHLAAALGTPTIALY 277 (334)
T ss_pred HHHHHHHHhcCCEEEccCC------h-HHHHHHHcCCCEEEEE
Confidence 788999999999997653 2 4445899999999753
No 179
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=93.25 E-value=0.092 Score=43.56 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=42.3
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcC-CCEEEcCC--CCcceeeecCCceeeecCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGK 224 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G-~Pvi~~~~--~~~~e~v~~~~~g~~~~~~d 224 (284)
.+..+.|+.+..+++|.- ...+..-++|||++| +|||.++. -.+.+++.=..-.+.++..+
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~ 291 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEAD 291 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHH
Confidence 468899999999999874 444778999999999 57777653 24455553344455565433
No 180
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.19 E-value=3.8 Score=33.06 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=29.7
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
.-+..++..||.+|.+.. . =+-+.||.+.|+||-+..-..
T Consensus 236 NPY~~~La~Adyii~TaD--S---inM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 236 NPYIDMLAAADYIISTAD--S---INMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred CchHHHHhhcceEEEecc--h---hhhhHHHhccCCCeEEEecCC
Confidence 346788999999998765 1 125679999999998765443
No 181
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=92.07 E-value=4.5 Score=31.20 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=71.8
Q ss_pred CCCCeEEEEEecCCCCChHHH-HHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh-cC
Q 023290 119 EVPSVHAVIIGSDMNAQTKFE-SELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA-FQ 196 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~-~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama-~G 196 (284)
+++++.+.++|.|..-+++-. .......++. ..|++++-|.+-....|.+.-|.++ +|
T Consensus 28 dRedi~vrVvgsgaKM~Pe~veaav~~~~e~~--------------------~pDfvi~isPNpaaPGP~kARE~l~~s~ 87 (277)
T COG1927 28 DREDIEVRVVGSGAKMDPECVEAAVTEMLEEF--------------------NPDFVIYISPNPAAPGPKKAREILSDSD 87 (277)
T ss_pred ccCCceEEEeccccccChHHHHHHHHHHHHhc--------------------CCCEEEEeCCCCCCCCchHHHHHHhhcC
Confidence 448999999999764333211 1111222221 3355444333214455677888877 68
Q ss_pred CCEEE-cCCCCc--ceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 197 LPVLG-TAAGGT--TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 197 ~Pvi~-~~~~~~--~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+|+|. +|.++. ++-+++..-|+++-.. +.+..+=+++++ |-+.........+.+...=-...+.+.+.++++
T Consensus 88 ~PaiiigDaPg~~vkdeleeqGlGYIivk~----DpmiGArREFLD-PvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie 162 (277)
T COG1927 88 VPAIIIGDAPGLKVKDELEEQGLGYIIVKA----DPMIGARREFLD-PVEMASFNADVMKVLAATGAFRLVQEAIDKVIE 162 (277)
T ss_pred CCEEEecCCccchhHHHHHhcCCeEEEecC----CcccchhhhhcC-HHHHHhhhhHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88874 555553 3444555667765543 345555555553 222222222222222222223334455666666
Q ss_pred HHHHhhcCCCC
Q 023290 274 EVLKKSKSHLY 284 (284)
Q Consensus 274 ~~~~~~~~~l~ 284 (284)
.+-....++|+
T Consensus 163 ~vk~gk~~eLP 173 (277)
T COG1927 163 DVKEGKEPELP 173 (277)
T ss_pred HHhcCCCcCCC
Confidence 66665555553
No 182
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=91.92 E-value=7.8 Score=33.60 Aligned_cols=207 Identities=12% Similarity=0.129 Sum_probs=105.4
Q ss_pred HHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccc---c---HHHHHHHHHH
Q 023290 35 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK---G---QDLFLHSFYE 108 (284)
Q Consensus 35 ~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k---~---~~~~~~a~~~ 108 (284)
..+.++....++..+..|-...++........ .......++++.++.+|+|.-++.... + ....++. .+
T Consensus 163 f~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~----~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~-~~ 237 (388)
T COG1887 163 FAEAFNIDKENILETGYPRNDKLFDEAGKTED----ILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDI-EK 237 (388)
T ss_pred HHHHhcccccceeecCcccchhhhhhccchhh----hHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhhhH-HH
Confidence 34456777777766655544433332222111 122445566777788898877776654 2 2222221 22
Q ss_pred HHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchh
Q 023290 109 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 188 (284)
Q Consensus 109 l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~ 188 (284)
+.+.+.+ .++.+++--+.. ....+...- ...+.+..+....++..+|..+|++|.- ++.+
T Consensus 238 ~~~~l~~-----~~~~ii~k~Hp~-----is~~~~~~~---~~~~~~~~vs~~~di~dll~~sDiLITD-------ySSv 297 (388)
T COG1887 238 LKEKLGE-----NEYVIIVKPHPL-----ISDKIDKRY---ALDDFVLDVSDNADINDLLLVSDILITD-------YSSV 297 (388)
T ss_pred HHHhhcc-----CCeEEEEecChh-----hhhhhhhhh---hccceeEecccchhHHHHHhhhCEEEee-------chHH
Confidence 2222221 455555544321 111111110 1112334444356899999999999943 3569
Q ss_pred HHHHHhcCCCEEEc--CCCCc---ceee---ecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 023290 189 TIEAMAFQLPVLGT--AAGGT---TEIV---VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 189 ~~Eama~G~Pvi~~--~~~~~---~e~v---~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (284)
..|+|...+|||.. |.... +.+. +...-|-++.. ..++.++|.....+++...+..+...+.+.. +.
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~----~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~-~~ 372 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVET----QEELIDAIKPYDEDGNYDLEKLRVFNDKFNS-YE 372 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCcccccc----HHHHHHHHHhhhcccchhHHHHHHHHHhhcc-cc
Confidence 99999999999965 22111 1111 12223444443 6788999988887544333333333333322 23
Q ss_pred HHHHHHHHHHH
Q 023290 261 EHHMAERIAVV 271 (284)
Q Consensus 261 ~~~~~~~~~~~ 271 (284)
-....+++.+.
T Consensus 373 dg~ss~ri~~~ 383 (388)
T COG1887 373 DGRSSERILKL 383 (388)
T ss_pred cccHHHHHHHH
Confidence 34444444443
No 183
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=91.52 E-value=3.6 Score=34.11 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=43.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
+.+++++......+ ....+.....+.-+..+......+++..+++.||++|.... ..++=|+.+|+|+|+
T Consensus 205 g~~v~~i~~~~~~D---~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-------H~~I~A~~~gvP~i~ 274 (298)
T TIGR03609 205 GAFVLFLPFQQPQD---LPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-------HALILAAAAGVPFVA 274 (298)
T ss_pred CCeEEEEeCCcchh---HHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-------HHHHHHHHcCCCEEE
Confidence 55565555432222 23333444443333344322223678889999999987665 267779999999996
Q ss_pred cC
Q 023290 202 TA 203 (284)
Q Consensus 202 ~~ 203 (284)
-.
T Consensus 275 i~ 276 (298)
T TIGR03609 275 LS 276 (298)
T ss_pred ee
Confidence 63
No 184
>PLN03015 UDP-glucosyl transferase
Probab=91.50 E-value=9.8 Score=33.91 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=47.0
Q ss_pred EEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceee-ecCCceeeec----CCCC
Q 023290 155 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHP----VGKE 225 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v-~~~~~g~~~~----~~d~ 225 (284)
+.+.++..+. .++.+..+...-+. -| -++++||+++|+|+|+-...+ +...+ +.-+.|+-+. .+..
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH---~G-wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH---CG-WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec---CC-chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 4555665333 46666666333332 22 358999999999999875422 22222 2233444442 1112
Q ss_pred ChHHHHHHHHHHhh
Q 023290 226 GITPLAKNIVKLAT 239 (284)
Q Consensus 226 ~~~~~~~~i~~l~~ 239 (284)
+-++++++|.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 37899999999995
No 185
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=91.44 E-value=2.9 Score=33.89 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=65.8
Q ss_pred cCccchhHHHHHhcCCCEEEcCCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 023290 182 GECFGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 258 (284)
Q Consensus 182 ~e~~~~~~~Eama~G~Pvi~~~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 258 (284)
+-+++..+.=-|+|+-.|+..... ...+.+.....=+-+..+. +.+++.++|..+.++++..+++++++++++.+.
T Consensus 154 G~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~-sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 154 GVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDL-SCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred CccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCC-chhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 334555666678888888876532 1222233333333333321 123499999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 023290 259 FQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (284)
.+.+.+..-+..++.+.-
T Consensus 233 L~~~~~~~Y~~~ll~eya 250 (256)
T smart00672 233 LSMEDVYDYMFHLLQEYA 250 (256)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999888887654
No 186
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=91.23 E-value=3.5 Score=36.70 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=73.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEecc------ccCHHHHHhhccEEEEcCCCCcCccchhHHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNK------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~------~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
..+-+-+.|... ....+..+-++.+. .+....+..... ...+.+.|+.+.++++|.- .+...-.++||+
T Consensus 289 R~~L~~F~G~~~--~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai 364 (464)
T KOG1021|consen 289 RPILAFFAGAPA--GGQIRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPG--DTPTSPRLFDAI 364 (464)
T ss_pred CceEEEEecccc--CCcHHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECCCC--CCcccHhHHHHH
Confidence 345556666621 11255555555554 111112222211 2578889999999999986 666777999999
Q ss_pred hcC-CCEEEcCCC--CcceeeecCCceeeecCCCCChHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHH
Q 023290 194 AFQ-LPVLGTAAG--GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEH 262 (284)
Q Consensus 194 a~G-~Pvi~~~~~--~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
..| +|||.++.- ...+.+.-..-++.++..+ +... |.+++. ..++...|.++....+...+-+.
T Consensus 365 ~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~--v~~~---~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 365 VSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKD--VPEL---IKNILLSIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred HhCCccEEEcCCcccCcCCCccceEEEEEEEHHH--hhhH---HHHHHHhcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 999 688888752 3333433333455665322 3444 344443 33444555555544444444433
No 187
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=90.46 E-value=2.9 Score=36.32 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=69.2
Q ss_pred cCccchhHHHHHhcCCCEEEcCCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 023290 182 GECFGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 258 (284)
Q Consensus 182 ~e~~~~~~~Eama~G~Pvi~~~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 258 (284)
+-+++..+-=-|+||-.|+..+.. .+...+....+=+-+...+ +.+++.++|..+.+++++.+++++++++++.+.
T Consensus 223 G~~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~-d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 223 GNAWSGRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDD-DLSDLEEKVEWLNAHDDEAQRIAENGQRFAREY 301 (395)
T ss_pred CceeehhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEecccc-chhhHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 344555666669999999976432 1222333444445555421 389999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 023290 259 FQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (284)
.+.+.+..-+..++.+.-
T Consensus 302 L~~~~~~~Y~~~LL~eYa 319 (395)
T PF05686_consen 302 LTMEDVYCYWRRLLLEYA 319 (395)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 999999988888887653
No 188
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=90.30 E-value=4.1 Score=32.78 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=30.0
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 204 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~ 204 (284)
.++..+++.||++|.... ...+=|+++|+|+|+-..
T Consensus 249 ~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 249 DELLELISQADLVISMRL-------HGAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEEEEec
Confidence 788899999999998776 256669999999998653
No 189
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=89.62 E-value=6.3 Score=32.10 Aligned_cols=157 Identities=12% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHHHHhCCCCCCeEE---EEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHH----
Q 023290 72 EHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN---- 144 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i---~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~---- 144 (284)
...|..+-.+...+.. +|+||....||+..+++.-.+.++ .+..+-++-|-.... ....-+..
T Consensus 168 ~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~~~t~~~GierS~--A~~~i~d~~~~~ 237 (355)
T PF11440_consen 168 NKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAGFKTIMEGIERSP--AKISIKDHGIPY 237 (355)
T ss_dssp HHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT-EEEEE---SST--HHHHHHHTT--E
T ss_pred HHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------CcchhHHhhhhhcCC--ceeeeecCCccc
Confidence 3455555544445555 799999999999999998877543 277888887753321 11111111
Q ss_pred ------HHHHcCC--CCcEEEeccc--cCHHHHHhhccEEEEcCCC---C-cCccchhHHHHHhcCC-CEEEcCCCCcce
Q 023290 145 ------YVMQKKI--QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---W-GECFGRITIEAMAFQL-PVLGTAAGGTTE 209 (284)
Q Consensus 145 ------~~~~~~~--~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~---~-~e~~~~~~~Eama~G~-Pvi~~~~~~~~e 209 (284)
.+.+..+ ..-+..+|.. ++..+.|+.+-+....+.. + .+.+-.+-+|..|||. ||.-..+|..-.
T Consensus 238 ~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r 317 (355)
T PF11440_consen 238 EYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNR 317 (355)
T ss_dssp EEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB
T ss_pred ccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccce
Confidence 0001111 1236667763 7788888888777654431 1 2235568899999995 555554443322
Q ss_pred -------eeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 210 -------IVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 210 -------~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
++......+.++..| .++-.+.|.++..+
T Consensus 318 ~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~ 353 (355)
T PF11440_consen 318 FTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANN 353 (355)
T ss_dssp -TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-
T ss_pred eeecCceeeccCcceeEeccch--HHHHHHHHHHHhcc
Confidence 333344567788777 88888888777654
No 190
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=88.29 E-value=11 Score=29.98 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred eEEEEEecCC--CCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCC-------C-cCccchhHHHH
Q 023290 123 VHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------W-GECFGRITIEA 192 (284)
Q Consensus 123 ~~l~i~G~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~-------~-~e~~~~~~~Ea 192 (284)
.+++++.... .+...+.+..++..+++|.. +..+...++..+.+..||+++.+.-+ | ..++--.+-|+
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 3455555433 23345677788888888864 55555446677889999988876421 0 01122235588
Q ss_pred HhcCCCEEEcCCCC
Q 023290 193 MAFQLPVLGTAAGG 206 (284)
Q Consensus 193 ma~G~Pvi~~~~~~ 206 (284)
...|+|++.+..|.
T Consensus 110 ~~~G~~~~G~SAGA 123 (233)
T PRK05282 110 VKNGTPYIGWSAGA 123 (233)
T ss_pred HHCCCEEEEECHHH
Confidence 88999999886554
No 191
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.05 E-value=1.6 Score=35.86 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=60.1
Q ss_pred cEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc------ceeee--cCCceeeecCCCC
Q 023290 154 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT------TEIVV--NGTTGLLHPVGKE 225 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~------~e~v~--~~~~g~~~~~~d~ 225 (284)
+..+.-......+++..+|+.+-.. |...=.+...|+|||....-|. .+--. -|..-.++.+.
T Consensus 295 nc~l~lsqqsfadiLH~adaalgmA-------GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-- 365 (412)
T COG4370 295 NCSLWLSQQSFADILHAADAALGMA-------GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-- 365 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHHhc-------cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc--
Confidence 4444444468888999999966322 5566678999999999864332 22100 03333455553
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 023290 226 GITPLAKNIVKLATHVERRLTMGKRGYERVKE 257 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 257 (284)
++.-.....+++.|++....+..++++++-+
T Consensus 366 -aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 366 -AQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred -hhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 3444444444999999998888888876644
No 192
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=87.46 E-value=11 Score=29.63 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=53.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHc-CCCCcEEEeccccCHHHHHhhccEEEEcCCC-------CcC-ccchhHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 191 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~-------~~e-~~~~~~~E 191 (284)
.+.++.++........++...+.+...++ +....+...-..++..+.+..||++++|.-+ |.+ ++...+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 56788888876665556777788888888 7632222111135667889999999998621 111 12223445
Q ss_pred HHhcCCCEEEcCCC
Q 023290 192 AMAFQLPVLGTAAG 205 (284)
Q Consensus 192 ama~G~Pvi~~~~~ 205 (284)
+...|+|++.+..|
T Consensus 110 ~~~~g~~i~G~SAG 123 (212)
T cd03146 110 ALERGVVYIGWSAG 123 (212)
T ss_pred HHHCCCEEEEECHh
Confidence 66679999877544
No 193
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.37 E-value=1.8 Score=30.73 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=32.2
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 209 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e 209 (284)
+++.+++..+|++|-.|. .+..--.+-.++.+|+|+|+..+|...+
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 688899999999998886 5555555667888999999987776543
No 194
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=86.97 E-value=13 Score=31.93 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred HHHHHHHhCCC---CCCeEEEEecccccccc-HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHH
Q 023290 71 REHVRESLGVR---NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 146 (284)
Q Consensus 71 ~~~~r~~~~~~---~~~~~i~~~g~~~~~k~-~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~ 146 (284)
+..+.+++|++ ++.+.+..++ ..+. +..+++++... ...+.+.+.++. ....+..+.
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~---Ye~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~~~ 228 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFC---YENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAAWL 228 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEe---CCchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHHHh
Confidence 56778889985 4455554444 2233 66777776642 256776666653 344454443
Q ss_pred H----HcC---C--CCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 147 M----QKK---I--QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 147 ~----~~~---~--~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
. ..| . .-.+..++++ +++..++..||+-+.=.. =+++-|+-.|+|.|=.
T Consensus 229 ~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-------DSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 229 GDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE-------DSFVRAQWAGKPFVWH 288 (374)
T ss_pred ccccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEecc-------hHHHHHHHhCCCceEe
Confidence 3 111 0 1247778876 789999999999876442 2788999999999944
No 195
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=85.00 E-value=17 Score=28.77 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCCCeEEEEEecCCCCChHHHHH-HHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh-cC
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESE-LRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA-FQ 196 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~-l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama-~G 196 (284)
.+.++.+.++|.|..-.++..+. .....+++ .-|++|+.|.+..-..|...=|.+. .|
T Consensus 28 dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--------------------~pDf~i~isPN~a~PGP~~ARE~l~~~~ 87 (277)
T PRK00994 28 DREDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--------------------KPDFVIVISPNPAAPGPKKAREILKAAG 87 (277)
T ss_pred cccCceEEEeccCCCCCHHHHHHHHHHHHHhh--------------------CCCEEEEECCCCCCCCchHHHHHHHhcC
Confidence 34799999999986443332221 11122222 3355554444214445667777765 58
Q ss_pred CCEEE-cCCCCcc--eeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 197 LPVLG-TAAGGTT--EIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 197 ~Pvi~-~~~~~~~--e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|+|+ +|.++.+ +.+++.+-|+++-..| .+..+=++++
T Consensus 88 iP~IvI~D~p~~K~~d~l~~~g~GYIivk~D----pMIGArREFL 128 (277)
T PRK00994 88 IPCIVIGDAPGKKVKDAMEEQGLGYIIVKAD----PMIGARREFL 128 (277)
T ss_pred CCEEEEcCCCccchHHHHHhcCCcEEEEecC----ccccchhhcc
Confidence 89885 5555542 4555666787766644 3444444444
No 196
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=84.31 E-value=26 Score=30.79 Aligned_cols=45 Identities=4% Similarity=-0.042 Sum_probs=29.4
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCccee
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 210 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~ 210 (284)
+++...+..||+++..+.+ +-++. ...+.-+.|.+.-|.+-.+++
T Consensus 234 ~~l~~~l~~aDiVI~aT~a---~~~vi-~~~~~~~~~~~~iDLavPRdi 278 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNV---LEYIV-TCKYVGDKPRVFIDISIPQAL 278 (414)
T ss_pred HHHHHHhccCCEEEECcCC---CCeeE-CHHHhCCCCeEEEEeCCCCCC
Confidence 4667788999999987752 22222 233445789888887665554
No 197
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=84.18 E-value=14 Score=28.84 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec---cccCHHHHHhhccEEEEcCCC-------CcCc-cchhH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQA-------WGEC-FGRIT 189 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~---~~~~~~~~~~~ad~~~~ps~~-------~~e~-~~~~~ 189 (284)
...++.++.........+.+.+.+..+++|........- ..+++.+.+.+||+++++.-. |.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 456777776654434446777888888888753322221 226778899999999987421 1222 22246
Q ss_pred HHHHhcCCCEEEcCCCC
Q 023290 190 IEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 190 ~Eama~G~Pvi~~~~~~ 206 (284)
.+...-|+|++.+..|.
T Consensus 108 ~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 108 LKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHcCCeEEEcCHHH
Confidence 77888899999876543
No 198
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=84.14 E-value=0.88 Score=33.76 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=10.7
Q ss_pred hcccCCCeEEEecCCccccc
Q 023290 39 LRIKMPDTYVVHLGNSKELM 58 (284)
Q Consensus 39 ~~~~~~~i~vi~~g~~~~~~ 58 (284)
+|+++.++.||+||+|.+.|
T Consensus 157 ~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 157 FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HT--SS-EEE----B-CCCH
T ss_pred hCCcccCCEEEECCccHHHc
Confidence 89999999999999999876
No 199
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=83.23 E-value=30 Score=30.11 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHHHHHhC-C-----CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHH
Q 023290 71 REHVRESLG-V-----RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 144 (284)
Q Consensus 71 ~~~~r~~~~-~-----~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~ 144 (284)
+..+.++|| . ++...+.+...++.+-.-...+++++.+ ++|++.+++....+ .-.+.
T Consensus 31 ~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~-------Tg~e~ 93 (419)
T COG1519 31 RKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTP-------TGAER 93 (419)
T ss_pred HHHHHHHhcccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCc-------cHHHH
Confidence 344555555 1 2234666777777765544444444433 45899888876433 22233
Q ss_pred HHHHcCCCCcEEEeccc--cCHHHHH--hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 145 YVMQKKIQDRVHFVNKT--LTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 145 ~~~~~~~~~~v~~~~~~--~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+.++....+.+++.. .-+..++ -..|++|..= .|-+|+.+.|+-..|+|++.-+
T Consensus 94 a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~E---tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 94 AAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIME---TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred HHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEe---ccccHHHHHHHHHcCCCEEEEe
Confidence 33444433345555542 2334444 4667777654 6889999999999999999764
No 200
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.73 E-value=34 Score=29.61 Aligned_cols=167 Identities=11% Similarity=0.142 Sum_probs=93.0
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC--hHHHHHHHHHHHHcCCCCcEEEe-ccc----
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ--TKFESELRNYVMQKKIQDRVHFV-NKT---- 161 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~--~~~~~~l~~~~~~~~~~~~v~~~-~~~---- 161 (284)
|.|+...-+-.....+.+.++.+ .++.++|+-...... ....+++.+..+..+ |+.|.|. +..
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKk---------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKK---------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIGQA 228 (483)
T ss_pred eEecccccchHHHHHHHHHHHHh---------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEeccccHh
Confidence 45666666667777777777765 778888875432211 224566666666554 5566654 321
Q ss_pred --cCHHHHHhhccE--EEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC----CceeeecCCCCChHHHHHH
Q 023290 162 --LTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG----TTGLLHPVGKEGITPLAKN 233 (284)
Q Consensus 162 --~~~~~~~~~ad~--~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~----~~g~~~~~~d~~~~~~~~~ 233 (284)
+....+=...|+ +|++-...+.-.|.++.--.+.++||+---.|.--+-++.- -.+-+.--+| ++.+.+.
T Consensus 229 ae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGD--i~glvek 306 (483)
T KOG0780|consen 229 AEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGD--IEGLVEK 306 (483)
T ss_pred HHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhcccc--HHHHHHH
Confidence 233344456666 34443211111122333334679999976555433322221 1122344566 8999999
Q ss_pred HHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 234 IVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 234 i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+.++.. |. .++.++.. ..+|+...+.+++.++.+
T Consensus 307 ~~ev~~~d~---~el~~kl~---~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 307 VQEVGKDDA---KELVEKLK---QGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHhhhhH---HHHHHHHH---hCCccHHHHHHHHHHHHh
Confidence 999873 32 23333332 257898888888887764
No 201
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=80.45 E-value=15 Score=25.21 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEc
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 177 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~p 177 (284)
|.+.++++++. ..++++|+..+-++ ...+.+.+.++..+++ +...+..+++...+....+.+..
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp--~~~~~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISE--NSKNKFKNYCNKYNIP--YIEGYSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC--EEEecCHHHHHHHhCCCCeEEEE
Confidence 45566666544 67888888775433 3678888888887765 33335557888888765555444
Q ss_pred CCCCcCccchhHHHHH
Q 023290 178 SQAWGECFGRITIEAM 193 (284)
Q Consensus 178 s~~~~e~~~~~~~Eam 193 (284)
-. .+++.-.+++.+
T Consensus 85 i~--d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VK--DKNMAKKLLKLW 98 (104)
T ss_pred Ee--ChHHHHHHHHHH
Confidence 43 566666666654
No 202
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=79.55 E-value=39 Score=28.95 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred HHHHHHHhCCC--CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH
Q 023290 71 REHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 148 (284)
Q Consensus 71 ~~~~r~~~~~~--~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 148 (284)
+..+.+++|++ ++..++..++ .+.-.+..+++++... ...+++.+-.+. ....+..+...
T Consensus 167 ~~~~~~~lg~~~~~~~~~vSLF~--Ye~~al~~ll~~~~~~----------~~pv~lLvp~Gr------~~~~v~~~l~~ 228 (371)
T TIGR03837 167 QRALLRRLGVGPEPDALLVSLFC--YENAALPALLDALAQS----------GSPVHLLVPEGR------ALAAVAAWLGD 228 (371)
T ss_pred HHHHHHHcCCCCCCCCeEEEEEe--cCChhHHHHHHHHHhC----------CCCeEEEecCCc------cHHHHHHHhCc
Confidence 34567788885 3444443333 2234477777777652 245555554432 34445444421
Q ss_pred --c--C---CC--CcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 149 --K--K---IQ--DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 149 --~--~---~~--~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+ | -. -.+++++++ +++..++-.||+-+.-. | =+++-|.-.|+|.|=-
T Consensus 229 ~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRG----E---DSFVRAqWAgkPfvWh 286 (371)
T TIGR03837 229 ALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRG----E---DSFVRAQWAGKPFVWH 286 (371)
T ss_pred cccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeec----h---hHHHHHHHcCCCceee
Confidence 0 1 01 147777875 88999999999977644 2 2889999999999843
No 203
>PRK13761 hypothetical protein; Provisional
Probab=79.36 E-value=29 Score=27.37 Aligned_cols=136 Identities=7% Similarity=0.099 Sum_probs=77.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc--ccCHH-----------HHHhhccEEEEcCCCCcCccch
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVA-----------PYLAAIDVLVQNSQAWGECFGR 187 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--~~~~~-----------~~~~~ad~~~~ps~~~~e~~~~ 187 (284)
-++.+-++-... +-.+.+....++.|.. .++|. ...++ .=+..||+++.|-. +|
T Consensus 95 A~iEVNLF~RT~----eR~~~I~~~l~~~Ga~---~vlG~~~~~~ip~L~~~R~~v~~~GIy~ADVVLVPLE---DG--- 161 (248)
T PRK13761 95 AKLEVNLFYRTE----ERVEKIAEVLREHGAK---EVLGTDEDARIPGLDHERAKVSEDGIYSADVVLVPLE---DG--- 161 (248)
T ss_pred CCEEEEeccCCH----HHHHHHHHHHHHcCCc---eeeCCCCcCcCCCCCCccceECcccceeccEEEecCC---CC---
Confidence 567777766532 2445566666666542 33332 11111 12568999999985 22
Q ss_pred hHHHHH-hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 023290 188 ITIEAM-AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 266 (284)
Q Consensus 188 ~~~Eam-a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
==.||+ .+|+-||+-|.....-.-+.. -+-+ ++.+..++-.++..-...+.......+.+...|+.+....
T Consensus 162 DR~EaL~~mGK~VI~IDLNPLSRTar~A--~itI------VDni~RA~p~m~~~~~elk~~~~~el~~iv~~~dN~~~L~ 233 (248)
T PRK13761 162 DRTEALVKMGKTVIAIDLNPLSRTARTA--TITI------VDNITRAVPNMTEYARELKKKDREELEEIVENYDNKKNLS 233 (248)
T ss_pred cHHHHHHHcCCeEEEEeCCCcccccccC--ceee------ehhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcHHHHH
Confidence 223443 579999999977765543222 1111 4567777766665444444444444455666788888777
Q ss_pred HHHHHHHHHHH
Q 023290 267 RIAVVLKEVLK 277 (284)
Q Consensus 267 ~~~~~~~~~~~ 277 (284)
...+.+.+-+.
T Consensus 234 ~al~~I~~rl~ 244 (248)
T PRK13761 234 EALKEIRERLT 244 (248)
T ss_pred HHHHHHHHHHH
Confidence 76666655443
No 204
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=78.95 E-value=42 Score=29.01 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=53.9
Q ss_pred CcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-Ccceeeec-CCceeeecCCCCChH
Q 023290 153 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVN-GTTGLLHPVGKEGIT 228 (284)
Q Consensus 153 ~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~-~~~g~~~~~~d~~~~ 228 (284)
.++.+.... +++...+..||++|..-. .+++=||+.|+|+|+-... -...+.++ +-.++..+..+.+.+
T Consensus 266 ~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~ 338 (385)
T COG2327 266 AEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAE 338 (385)
T ss_pred cceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchH
Confidence 567666543 456678999999996544 2666699999999986432 22222222 333455555554578
Q ss_pred HHHHHHHHHhhC-HHHHH
Q 023290 229 PLAKNIVKLATH-VERRL 245 (284)
Q Consensus 229 ~~~~~i~~l~~~-~~~~~ 245 (284)
.+.....+.+.+ ++.++
T Consensus 339 ~l~~~~~e~~~~~~~~~~ 356 (385)
T COG2327 339 ILSAVVLERLTKLDELRE 356 (385)
T ss_pred HHHHHHHHHHhccHHHHh
Confidence 888888877764 44333
No 205
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=78.58 E-value=18 Score=25.58 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
.|...+++++++ ...+++|+..+-.. .+....+..++++.+++ +.+.+..+++.......
T Consensus 33 ~G~~~v~kaikk------------gkakLVilA~D~s~-~~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~ 92 (122)
T PRK04175 33 KGTNETTKAVER------------GIAKLVVIAEDVDP-EEIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLE 92 (122)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCh-HHHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCC
Confidence 456777777765 67888888775422 12467899999999886 66777667887777654
No 206
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=78.36 E-value=30 Score=27.53 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=45.3
Q ss_pred CCCCeEEEEEecCCCCChHHHHH-HHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-hcC
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESE-LRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQ 196 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~-l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G 196 (284)
.+.++.+.++|.|..-.++..+. .....+++ ..|++|+-|.+..-..|...=|.+ +.|
T Consensus 27 dRedI~vrv~gsGaKm~pe~~e~~~~~~~~~~--------------------~pdf~I~isPN~~~PGP~~ARE~l~~~~ 86 (276)
T PF01993_consen 27 DREDIDVRVVGSGAKMGPEDVEEVVTKMLKEW--------------------DPDFVIVISPNAAAPGPTKAREMLSAKG 86 (276)
T ss_dssp --SSEEEEEEEEET--SHHHHHHHHHHHHHHH----------------------SEEEEE-S-TTSHHHHHHHHHHHHSS
T ss_pred ccCCceEEEeccCCCCCHHHHHHHHHHHHHhh--------------------CCCEEEEECCCCCCCCcHHHHHHHHhCC
Confidence 44899999999986433322111 11111121 345555544421334456677877 579
Q ss_pred CCEEE-cCCCCc--ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLG-TAAGGT--TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~-~~~~~~--~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|+|. +|.++. .+-+++..-|+++-..| .+..+=+++++
T Consensus 87 iP~IvI~D~p~~k~kd~l~~~g~GYIivk~D----pMIGArREFLD 128 (276)
T PF01993_consen 87 IPCIVISDAPTKKAKDALEEEGFGYIIVKAD----PMIGARREFLD 128 (276)
T ss_dssp S-EEEEEEGGGGGGHHHHHHTT-EEEEETTS----------TTT--
T ss_pred CCEEEEcCCCchhhHHHHHhcCCcEEEEecC----ccccccccccC
Confidence 99884 555543 34555677788777654 56665555553
No 207
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.64 E-value=33 Score=27.16 Aligned_cols=124 Identities=6% Similarity=0.059 Sum_probs=67.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccch-hHHHHHhcCCCE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR-ITIEAMAFQLPV 199 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~-~~~Eama~G~Pv 199 (284)
.+.+++++... ....+..+.+. ..+.+....-+ ...+..+++++..+. .....- ..-+|-+.|.+|
T Consensus 47 ~gA~VtVVap~------i~~el~~l~~~----~~i~~~~r~~~-~~dl~g~~LViaATd--D~~vN~~I~~~a~~~~~lv 113 (223)
T PRK05562 47 KGCYVYILSKK------FSKEFLDLKKY----GNLKLIKGNYD-KEFIKDKHLIVIATD--DEKLNNKIRKHCDRLYKLY 113 (223)
T ss_pred CCCEEEEEcCC------CCHHHHHHHhC----CCEEEEeCCCC-hHHhCCCcEEEECCC--CHHHHHHHHHHHHHcCCeE
Confidence 56777777753 33555555543 25665543212 234577888887765 233333 344666779999
Q ss_pred EEcCCCCcceee-----ecCCceeeecCCCCC---hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 023290 200 LGTAAGGTTEIV-----VNGTTGLLHPVGKEG---ITPLAKNIVKLATHVERRLTMGKRGYERVKE 257 (284)
Q Consensus 200 i~~~~~~~~e~v-----~~~~~g~~~~~~d~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 257 (284)
.+.+.+....++ +.+.--+-+..+-.+ ...+.+.|+.++.+-+...+.....|+.++.
T Consensus 114 n~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 114 IDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred EEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988776555543 333222333222111 3456666777765545555555556665554
No 208
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.36 E-value=24 Score=29.03 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=63.4
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccc-cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 150 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k-~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 150 (284)
+.+++++|+++..-.+ +.-+...+ .++..++-++++. .++.+.+.++. ....+.+......
T Consensus 165 ~~l~~rlgv~ek~~~~--~slFaY~npa~~s~ieq~r~a~----------~p~llL~~e~~------~~~~~~~~~~~~~ 226 (370)
T COG4394 165 EYLLERLGVNEKYDLI--ASLFAYENPALPSWIEQLRKAD----------KPILLLIPEGK------TQANFAKYFDNNN 226 (370)
T ss_pred HHHHHHcCCchhhchh--hhhhccCCcchHHHHHHHHhcC----------CCEEEEcccch------HHHHHHHHcCCCc
Confidence 5788899987643222 12222333 5777777666642 44555555442 2333333332211
Q ss_pred C---------CCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 151 I---------QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 151 ~---------~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
. +-+|..++++ +++.+++..||+-+.-.. -+.+-|...|+|.+=.
T Consensus 227 ~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRGE-------DSFVRAq~agkPflWH 282 (370)
T COG4394 227 NADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRGE-------DSFVRAQLAGKPFLWH 282 (370)
T ss_pred ccccchhcccceEEEEecCCcHhHHHHHHHhcccceeecc-------hHHHHHHHcCCCcEEE
Confidence 1 1135556665 789999999999876542 2788999999999854
No 209
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=76.48 E-value=34 Score=26.57 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=61.5
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcC---ccchhHHHHHh--
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGE---CFGRITIEAMA-- 194 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e---~~~~~~~Eama-- 194 (284)
++++.++.+.+ .....++......+....+.......+....+. ..|++++.... .+ .-|..+++.+.
T Consensus 3 ~~~Ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDHP----IVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCcH----HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHH
Confidence 35666666543 134555555554321111222222233444443 47888875431 11 13556665553
Q ss_pred -cCCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 -~G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
-++|+|... ... ....++.|..|++..+.+ ++++.++|..+..
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~ 125 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQK 125 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHC
Confidence 346777543 222 224456788899999887 9999999998865
No 210
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=75.78 E-value=38 Score=26.81 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=44.2
Q ss_pred CCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHH
Q 023290 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITP 229 (284)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~ 229 (284)
.++.+.|...... |++|.... .|. ..+++||.-+++|+|+- |....++++ -+.++.+|+ .-.
T Consensus 162 ~pd~~~f~~t~~~--------D~vvvln~--~e~-~sAilEA~K~~IPTIgIVDtN~~P~li-----TYpVPaNDD-s~~ 224 (251)
T KOG0832|consen 162 LPDALCFLPTLTP--------DLVVVLNP--EEN-HSAILEAAKMAIPTIGIVDTNCNPELI-----TYPVPANDD-SPA 224 (251)
T ss_pred CCcceeecccCCc--------ceeEecCc--ccc-cHHHHHHHHhCCCeEEEecCCCCccce-----eeccCCCCC-cHH
Confidence 4555666654321 77776655 444 45999999999999964 666667776 356776663 333
Q ss_pred HHHHHHHHh
Q 023290 230 LAKNIVKLA 238 (284)
Q Consensus 230 ~~~~i~~l~ 238 (284)
-.+-+..++
T Consensus 225 sv~f~~~l~ 233 (251)
T KOG0832|consen 225 SVEFILNLL 233 (251)
T ss_pred HHHHHHHHH
Confidence 344444443
No 211
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=75.60 E-value=11 Score=25.63 Aligned_cols=74 Identities=7% Similarity=0.061 Sum_probs=44.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-ccCHHHHHhhccEEEEcCCCCcCccchhHH--HHHhcCCCEEE
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITI--EAMAFQLPVLG 201 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~--Eama~G~Pvi~ 201 (284)
++++|.| --..-..+.+++.+++.|++ +.+.-. ..++...+..+|+++.... -.+-..-+ .+-..|+||..
T Consensus 4 ll~C~~G-aSSs~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQ---v~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 4 LVLCAGG-GTSGLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQ---MASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred EEECCCC-CCHHHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcCh---HHHHHHHHHHHhhhcCCCEEE
Confidence 3455555 22233677888889888885 333332 3577788889999887654 11122222 24456889987
Q ss_pred cCC
Q 023290 202 TAA 204 (284)
Q Consensus 202 ~~~ 204 (284)
-+.
T Consensus 78 I~~ 80 (99)
T cd05565 78 TTG 80 (99)
T ss_pred eCH
Confidence 764
No 212
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=74.82 E-value=36 Score=27.66 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh--CH
Q 023290 164 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HV 241 (284)
Q Consensus 164 ~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~--~~ 241 (284)
-..-++.||+++..... .|++=-.+++.+ -+.+++....++..+- ....--++.+|.+ ...+++.|.+.+. ||
T Consensus 46 d~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~~-~~~dPH~Wldp~n--~~~~a~~I~~~L~~~dP 120 (264)
T cd01020 46 DAAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDDK-EGDNPHLWYDPET--MSKVANALADALVKADP 120 (264)
T ss_pred HHHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccCC-CCCCCceecCHhH--HHHHHHHHHHHHHHhCc
Confidence 33558899999976642 565545566655 3456655443332110 0012234566665 7788888888776 77
Q ss_pred HHHHHHHHHHHHHHHH
Q 023290 242 ERRLTMGKRGYERVKE 257 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~ 257 (284)
+......+++.++..+
T Consensus 121 ~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 121 DNKKYYQANAKKFVAS 136 (264)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 7666666666665543
No 213
>PLN02929 NADH kinase
Probab=74.64 E-value=23 Score=29.52 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc---------ce
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT---------TE 209 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~---------~e 209 (284)
.+.++++.++.|+. +.... ..++......+|+++.-. .+|.=+...-.+..++||+.-+.|.. .+
T Consensus 36 ~~~~~~~L~~~gi~--~~~v~-r~~~~~~~~~~Dlvi~lG---GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~ 109 (301)
T PLN02929 36 VNFCKDILQQKSVD--WECVL-RNELSQPIRDVDLVVAVG---GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE 109 (301)
T ss_pred HHHHHHHHHHcCCE--EEEee-ccccccccCCCCEEEEEC---CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc
Confidence 34455555555542 21111 123334456889988654 44432333333556799999887631 22
Q ss_pred eeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 210 IVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 210 ~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
+-..+..|+++... ++++.+.|.++++.
T Consensus 110 ~~~~r~lGfL~~~~---~~~~~~~L~~il~g 137 (301)
T PLN02929 110 FDARRSTGHLCAAT---AEDFEQVLDDVLFG 137 (301)
T ss_pred cccccCccccccCC---HHHHHHHHHHHHcC
Confidence 22234679999876 78999999998864
No 214
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=74.19 E-value=20 Score=29.06 Aligned_cols=43 Identities=21% Similarity=0.100 Sum_probs=32.5
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
.++.+++..+|+++..+. .+...-.+..|+..|+|+|+...+.
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTGF 94 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 577777778999997665 4554556778999999999875443
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=72.77 E-value=66 Score=28.21 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=50.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchh-HHHHHhcCCCEEE
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI-TIEAMAFQLPVLG 201 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~-~~Eama~G~Pvi~ 201 (284)
-+++|++. ..+.-++++++++. .+. ..+++..++..+|+++..+.+...-.+.. +-+++.--...+.
T Consensus 203 ~~i~IaNR-------T~erA~~La~~~~~--~~~---~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~li 270 (414)
T COG0373 203 KKITIANR-------TLERAEELAKKLGA--EAV---ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLI 270 (414)
T ss_pred CEEEEEcC-------CHHHHHHHHHHhCC--eee---cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEE
Confidence 45556655 34666667777651 111 12689999999999998764211222222 3345554455677
Q ss_pred cCCCCcceeeecC---CceeeecCCC
Q 023290 202 TAAGGTTEIVVNG---TTGLLHPVGK 224 (284)
Q Consensus 202 ~~~~~~~e~v~~~---~~g~~~~~~d 224 (284)
.|.+-.+++-.+- .+-++++-+|
T Consensus 271 vDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 271 VDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred EEecCCCCCCccccCcCCeEEEehhh
Confidence 7877666654321 2345666433
No 216
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=72.51 E-value=45 Score=28.42 Aligned_cols=110 Identities=12% Similarity=0.227 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCC--CCcEEEeccccCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCc
Q 023290 140 SELRNYVMQKKI--QDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTT 216 (284)
Q Consensus 140 ~~l~~~~~~~~~--~~~v~~~~~~~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~ 216 (284)
..+..++..+.+ .....|.|.. +++.++ +..|++|.-. |..+..-.-+|++.-|=|.|-. ..++++ .
T Consensus 238 ~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~VvSHq--WeN~lNYlY~daLyggYPLVHN-----S~~l~d--~ 307 (364)
T PF10933_consen 238 PTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVVSHQ--WENPLNYLYYDALYGGYPLVHN-----SPLLKD--V 307 (364)
T ss_pred HHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEEecc--ccchhhHHHHHHHhcCCCcccC-----cchhcc--c
Confidence 445555555544 2346666665 666666 5789998544 4555556778999999998854 345533 7
Q ss_pred eeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHH
Q 023290 217 GLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEH 262 (284)
Q Consensus 217 g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (284)
|+..+..| ..+-++++.+.+. .....+...+++++.+.. ++..
T Consensus 308 GYYY~~fD--~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~~p~ 351 (364)
T PF10933_consen 308 GYYYPDFD--AFEGARQLLRAIREHDADLDAYRARARRLLDR-LSPE 351 (364)
T ss_pred CcCCCCcc--HHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-hCCC
Confidence 99999888 8888888888877 444556666777766543 4443
No 217
>PRK07714 hypothetical protein; Provisional
Probab=71.92 E-value=28 Score=23.55 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
|.+.+++++.. ..++++|+..+-++ ...+.+...+...+++ +.+.+..+++...+...
T Consensus 22 G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~ 79 (100)
T PRK07714 22 GEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKD 79 (100)
T ss_pred cHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCC
Confidence 56677776654 67788888775433 3677888888877764 33445556777776644
No 218
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=71.82 E-value=17 Score=27.29 Aligned_cols=52 Identities=10% Similarity=0.211 Sum_probs=37.6
Q ss_pred CCeEEEEEecCCCCChHH-HHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~-~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps~ 179 (284)
.+.+++++|.|. . ...+.+...+.+. +|.+.... +++.+.+..||+++..+.
T Consensus 43 ~gk~vlViG~G~-----~~G~~~a~~L~~~g~--~V~v~~r~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSN-----IVGKPLAALLLNRNA--TVTVCHSKTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcH-----HHHHHHHHHHhhCCC--EEEEEECCchhHHHHHhhCCEEEEcCC
Confidence 677899999874 2 3335555555554 47676665 789999999999998765
No 219
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.54 E-value=58 Score=26.65 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=62.9
Q ss_pred EEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecC--------CCC-ChHHHHHHHHHHHHcCCCCcEEE
Q 023290 87 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD--------MNA-QTKFESELRNYVMQKKIQDRVHF 157 (284)
Q Consensus 87 i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~--------~~~-~~~~~~~l~~~~~~~~~~~~v~~ 157 (284)
++.+|.... ...+.+++...++.+ -..+++..|.- +.+ ..+....+++..++.|++--..+
T Consensus 29 ~~iaGPCsi-e~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 29 IIIAGPCAV-ESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred EEEEeCCcC-CCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEee
Confidence 345665443 457778887777765 44556666621 111 13355667788888887533333
Q ss_pred eccccCHHHHHhhccEEEEcCCCCcCccchhHH-HHHhcCCCEEEcCC
Q 023290 158 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAA 204 (284)
Q Consensus 158 ~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~-Eama~G~Pvi~~~~ 204 (284)
... .++..+...+|++-.+|+ +.....++ ++...|+||+.++-
T Consensus 99 ~d~-~~~~~l~~~vd~~kIga~---~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 99 MDT-RDVEEVADYADMLQIGSR---NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred CCh-hhHHHHHHhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 332 355555566899999996 33344455 45567999998753
No 220
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=68.99 E-value=43 Score=25.10 Aligned_cols=87 Identities=8% Similarity=0.128 Sum_probs=51.5
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 246 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~ 246 (284)
+..||+++.|-. +| ==.||+ .+|+-||+-|.....-.-+.. -+-- ++.+..++-.+++.-...+.
T Consensus 87 Iy~ADVVLVPLE---DG---DR~EAL~~mGK~VIaIDLNPLSRTar~A---titI-----VDni~RA~p~~~~~~~~lk~ 152 (178)
T PF02006_consen 87 IYSADVVLVPLE---DG---DRTEALVKMGKTVIAIDLNPLSRTARTA---TITI-----VDNITRAIPNMIEFARELKK 152 (178)
T ss_pred ceeccEEEeccC---CC---cHHHHHHHcCCeEEEEeCCCcccccccC---ceee-----ehhHHHHHHHHHHHHHHHhc
Confidence 557999999985 22 223443 579999999977665543222 1111 45677777766654444433
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 023290 247 MGKRGYERVKEIFQEHHMAERI 268 (284)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (284)
......+.+...|+.+......
T Consensus 153 ~~~~el~~iv~~~dN~~~L~~a 174 (178)
T PF02006_consen 153 KDREELEEIVKNYDNKKNLSEA 174 (178)
T ss_pred CCHHHHHHHHHhcCcHHHHHHH
Confidence 3444444455567777665543
No 221
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=68.71 E-value=8.1 Score=28.72 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.2
Q ss_pred hhccEEEEcCCC--C--cCccchhHHHHHhcCCCEEEcCCC
Q 023290 169 AAIDVLVQNSQA--W--GECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 169 ~~ad~~~~ps~~--~--~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
..+|++|+.-.. . ..|+--.+.+|++.|+||++.-..
T Consensus 92 ~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 92 EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 348999987543 1 234445688999999999987443
No 222
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=68.43 E-value=30 Score=23.39 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=29.6
Q ss_pred CHHHHHhhccEEEEcCCCCcCccch-hHHHHHhcCCCEEEcCCCCcceee
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGR-ITIEAMAFQLPVLGTAAGGTTEIV 211 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~-~~~Eama~G~Pvi~~~~~~~~e~v 211 (284)
++...+..+++++..+. .....- ..-+|-+.|+||-+.|.+...+++
T Consensus 53 ~~~~~l~~~~lV~~at~--d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 53 EFEEDLDGADLVFAATD--DPELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp S-GGGCTTESEEEE-SS---HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred hHHHHHhhheEEEecCC--CHHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 34456788898887764 222222 334666689999999988877665
No 223
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=67.69 E-value=17 Score=28.83 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
.....+++|+...-..+....+...+++..++ -|.|.+. ...+-..+|.++.||.
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~---~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLP-IILFPSN---PTNVSRDADALFFPSV 80 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCC-EEEeCCC---ccccCcCCCEEEEEEe
Confidence 45667888875433333445555666666654 4555554 3444567999999885
No 224
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=67.50 E-value=32 Score=28.44 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeccccCHHHH----HhhccEEEEcCCCC-cCccchhHHHHHhcCCCEEEcCCCCcceee
Q 023290 137 KFESELRNYVMQKKIQDRVHFVNKTLTVAPY----LAAIDVLVQNSQAW-GECFGRITIEAMAFQLPVLGTAAGGTTEIV 211 (284)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~----~~~ad~~~~ps~~~-~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v 211 (284)
...+.+++.++++|+.-........+++... -...|+++++.... ...+...+..+...++|++++. ..++
T Consensus 147 ~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v 222 (294)
T PF04392_consen 147 AQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS----DFYV 222 (294)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS----HHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC----HHHh
Confidence 3566777888888774322333334454443 35678887765421 1122233446677899999875 3444
Q ss_pred ecCCce
Q 023290 212 VNGTTG 217 (284)
Q Consensus 212 ~~~~~g 217 (284)
+.|..+
T Consensus 223 ~~Gal~ 228 (294)
T PF04392_consen 223 KAGALG 228 (294)
T ss_dssp CTT-SE
T ss_pred cCCcEE
Confidence 455333
No 225
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.35 E-value=58 Score=25.44 Aligned_cols=95 Identities=12% Similarity=0.173 Sum_probs=54.7
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 246 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~ 246 (284)
+..||+++.|-. +| -=.||+ -+|+-||+-|.....-.-+.. -+.+ ++.+..++-.++.--.+.+.
T Consensus 151 Iy~ADVVLvpLE---DG---DRteaLv~mGK~ViaIDLNPLSRTar~A--sItI------VDnivRA~p~li~~~~em~~ 216 (256)
T COG1701 151 IYSADVVLVPLE---DG---DRTEALVRMGKTVIAIDLNPLSRTARKA--SITI------VDNIVRAVPNLIEFVKEMKN 216 (256)
T ss_pred ceeccEEEEecC---CC---cHHHHHHHhCCeEEEEeCCccccccccC--ceee------eHHHHHHHHHHHHHHHHHhc
Confidence 567999999985 22 223444 479999999987766544332 1211 46677777777654332222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 247 MGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
....-.+.+...|+...+..+..+.+.+-+
T Consensus 217 ~~reel~~iv~~ydN~~~l~eal~~I~~rL 246 (256)
T COG1701 217 ASREELEEIVENYDNKEVLAEALKHIAERL 246 (256)
T ss_pred cCHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 222222334456777766666555554433
No 226
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=66.69 E-value=68 Score=25.96 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=53.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc--c-----cCHHHHHhhccEEEEcCCC------CcCccch
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-----LTVAPYLAAIDVLVQNSQA------WGECFGR 187 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--~-----~~~~~~~~~ad~~~~ps~~------~~e~~~~ 187 (284)
++.+++++...+....++.+...+..+++|.. .+..+.- . ++..+.+..||++++..-. .+...++
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 55677777654434445667777888888874 3433332 1 3566789999998875421 1222232
Q ss_pred --hHHHHHhcCCCEEEcCCCCc
Q 023290 188 --ITIEAMAFQLPVLGTAAGGT 207 (284)
Q Consensus 188 --~~~Eama~G~Pvi~~~~~~~ 207 (284)
.+-++...|.|++.+..|.+
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHHH
Confidence 35588889998888876553
No 227
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=66.34 E-value=31 Score=30.18 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=40.0
Q ss_pred CeEEEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcC
Q 023290 122 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 122 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps 178 (284)
+.-=+|+|. |-.+..+..++++++++..|....+..+|.. ..-.+-+...|+++.-+
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~eIDvfV~ia 325 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFPEIDVFVQIA 325 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCccccEEEEEe
Confidence 333356665 4444456788999999999998888888876 33334577799998644
No 228
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=65.95 E-value=10 Score=24.41 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=32.6
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhh
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED 63 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~ 63 (284)
.......+.+.+.-....+.+++ ....+++.+|.++++..+.+...
T Consensus 13 ~~i~~~~~~iFt~D~~~~~~~~~-------~G~~~V~yLPLAa~~~~~~p~~~ 58 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRSFVEEYRN-------LGAENVFYLPLAANPERFRPIPV 58 (79)
T ss_pred hhhCCCCCEEEEECHHHHHHHHH-------cCCCCEEEccccCCHHHhCcccC
Confidence 34456677677766666666555 45568999999999998876543
No 229
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=65.89 E-value=17 Score=27.88 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=43.1
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 161 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-- 161 (284)
..+.+...+..+-.-...++ ..+.+ ++|+.++++...... -.+..++.... ...+.+++..
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li---~~l~~-------~~p~~~illT~~T~t----g~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLI---KRLRK-------QRPDLRILLTTTTPT----GREMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHH---HHHTT----------TS-EEEEES-CC----HHHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHH---HHHHH-------hCCCCeEEEEecCCc----hHHHHHHhCCC---CeEEEEeCccCH
Confidence 55666766665533333333 33322 348899888776442 22333322221 1235554431
Q ss_pred cCHHHHHhhc--cEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~a--d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+..++... |+++..- .|-+|+-+.+|-..|+|++.-+
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EEEEE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEEEEe
Confidence 3345555543 7777655 6888999999999999999765
No 230
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=65.48 E-value=35 Score=27.50 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=48.2
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce-eeecCCceeeecCCCCChHHHHHHHHHHhh--CHH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-IVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HVE 242 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e-~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~--~~~ 242 (284)
.-++.||+++..... .|++--.+.++.......+..-..++.. .-.+... ++.++.+ ...+++.|.+.+. +|+
T Consensus 43 ~~l~~Adlvv~~G~~-~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~npH-~Wldp~~--~~~~~~~Ia~~L~~~~P~ 118 (256)
T PF01297_consen 43 KKLQKADLVVYNGLG-LEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNPH-VWLDPEN--AKKMAEAIADALSELDPA 118 (256)
T ss_dssp HHHHHSSEEEES-TT-TSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBEST-GGGSHHH--HHHHHHHHHHHHHHHTGG
T ss_pred HHHHhCCEEEEeCCc-cchhhhhhhhcccccccceEEeecccccccCCCCCc-hHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 457899999987653 6777556665555555555544444421 1111222 3444444 6666666666655 666
Q ss_pred HHHHHHHHHHHHHH
Q 023290 243 RRLTMGKRGYERVK 256 (284)
Q Consensus 243 ~~~~~~~~~~~~~~ 256 (284)
......+++.++..
T Consensus 119 ~~~~y~~N~~~~~~ 132 (256)
T PF01297_consen 119 NKDYYEKNAEKYLK 132 (256)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 66666666655444
No 231
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=64.79 E-value=57 Score=24.43 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=44.5
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|++++.... .+.-|..+++.+....|+|....... ...+..|..+++..+.+ .+.+.++|..++.
T Consensus 47 ~~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (196)
T PRK10360 47 GVQVCICDISM-PDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCS--PDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHc
Confidence 46888775431 23345667777766788876533222 23345677889999887 8999999998765
No 232
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=64.45 E-value=68 Score=25.21 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=52.3
Q ss_pred eEE-EEEecCCCCChHHHHHHHHHHHHc---CCCCcEEEeccccCH----HHHHhh-------ccEEEEcCCCCcCccch
Q 023290 123 VHA-VIIGSDMNAQTKFESELRNYVMQK---KIQDRVHFVNKTLTV----APYLAA-------IDVLVQNSQAWGECFGR 187 (284)
Q Consensus 123 ~~l-~i~G~~~~~~~~~~~~l~~~~~~~---~~~~~v~~~~~~~~~----~~~~~~-------ad~~~~ps~~~~e~~~~ 187 (284)
.++ +++|+.-.+ ...+|.++++++ ++.-.|.+.|..++. .+++.. +.++..|+-
T Consensus 108 ~riVvFvGSpi~e---~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~~gshlv~Vppg-------- 176 (259)
T KOG2884|consen 108 QRIVVFVGSPIEE---SEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKGDGSHLVSVPPG-------- 176 (259)
T ss_pred eEEEEEecCcchh---hHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCCCCceEEEeCCC--------
Confidence 444 456664332 233555555544 444456777765322 222221 223444432
Q ss_pred hHHHHHhcCCCEEEcCCCCcceeeecCCc----eeeecCCCCChHHHHHHHHHHhh
Q 023290 188 ITIEAMAFQLPVLGTAAGGTTEIVVNGTT----GLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~~~~e~v~~~~~----g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+++-...-.|++..+.|+..--. +.+ .+-+++.+ .-++|.+|+--++
T Consensus 177 ~~L~d~l~ssPii~ge~g~a~~~~--~a~g~~f~fgvdp~~--DPELAlALRlSME 228 (259)
T KOG2884|consen 177 PLLSDALLSSPIIQGEDGGAAAGL--GANGMDFEFGVDPED--DPELALALRLSME 228 (259)
T ss_pred ccHHHHhhcCceeccCcccccccc--cccccccccCCCccc--CHHHHHHHHhhHH
Confidence 355566677899988755433322 222 23455555 5678888875444
No 233
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=64.41 E-value=58 Score=27.16 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=52.6
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCC-CEEEc-CCCCcceeee---c--CCceeeecCCCCChHHHHHHHHHHh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLGT-AAGGTTEIVV---N--GTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~-Pvi~~-~~~~~~e~v~---~--~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.-++.||+++..... .|+|-..+++.+.... ++|.. +.-....... + .....+.++.+ ...+++.|.+-+
T Consensus 77 ~~i~~ADliv~nG~~-le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~n--a~~~v~~I~~~L 153 (303)
T COG0803 77 AKLRKADLIVYNGLG-LEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKN--AKIYAENIADAL 153 (303)
T ss_pred HHHHhCCEEEEcCCC-hHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHH--HHHHHHHHHHHH
Confidence 458899999988774 6777677777765554 33422 2111111111 1 12234555554 666677776665
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 023290 239 T--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 239 ~--~~~~~~~~~~~~~~~~~~ 257 (284)
. +|+......+|+.++..+
T Consensus 154 ~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 154 VELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHhCcccHHHHHHHHHHHHHH
Confidence 5 787777777777776654
No 234
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=64.20 E-value=1e+02 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=26.7
Q ss_pred cCHHHHHhhccEEEEcCCC-CcCccchh----HHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAAIDVLVQNSQA-WGECFGRI----TIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~-~~e~~~~~----~~Eama~G~Pvi~~~ 203 (284)
.++...+..||++|...-+ +.+.+|.. ++-|..+|+|++...
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~g 155 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIG 155 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEEC
Confidence 3556679999999975421 12223321 345788999999754
No 235
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=64.17 E-value=47 Score=23.25 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
.|...+++++.+ ..++++|+...-.. ......+..+++..+++ +.+.+..+++......
T Consensus 29 ~G~~~v~kaikk------------gka~LVilA~D~s~-~~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk 87 (117)
T TIGR03677 29 KGTNEVTKAVER------------GIAKLVVIAEDVEP-PEIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGL 87 (117)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCc-HHHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCC
Confidence 456777777654 67888887764322 12468899999999886 5666666788777765
No 236
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=64.04 E-value=49 Score=27.71 Aligned_cols=86 Identities=10% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCeEEE--EEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHH----HHHhhccEEEEcCCCC-cCccchhHHHHH
Q 023290 121 PSVHAV--IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVA----PYLAAIDVLVQNSQAW-GECFGRITIEAM 193 (284)
Q Consensus 121 ~~~~l~--i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~----~~~~~ad~~~~ps~~~-~e~~~~~~~Eam 193 (284)
|+++=+ ++..+........++++..++..|+.-.-.......|+. .+....|+++.|...- .-++...+.+|.
T Consensus 157 Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~ 236 (322)
T COG2984 157 PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVAN 236 (322)
T ss_pred CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHHHH
Confidence 666644 455554444557788888898888742111222334443 3447789999886521 123445677999
Q ss_pred hcCCCEEEcCCCC
Q 023290 194 AFQLPVLGTAAGG 206 (284)
Q Consensus 194 a~G~Pvi~~~~~~ 206 (284)
..++|+++++.+.
T Consensus 237 ~~kiPli~sd~~~ 249 (322)
T COG2984 237 KAKIPLIASDTSS 249 (322)
T ss_pred HhCCCeecCCHHH
Confidence 9999999998643
No 237
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=63.60 E-value=40 Score=26.33 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEeccccCHHHHHhhc
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
++|.|- +.+.+.+..+.+ .....+++|+...-..+...++-+.+++ ..++ -+.|.+. ...+-..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~---------~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-vilfp~~---~~~i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKD---------AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-VILFPGN---VNGLSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHh---------cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-EEEECCC---ccccCcCC
Confidence 455555 444444444433 4566788886432222333444455555 3444 3445554 33445679
Q ss_pred cEEEEcCC
Q 023290 172 DVLVQNSQ 179 (284)
Q Consensus 172 d~~~~ps~ 179 (284)
|.++.||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999885
No 238
>PRK10494 hypothetical protein; Provisional
Probab=63.47 E-value=80 Score=25.69 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCCC-ChHHHHHHHHHHHHcCCCCc-EEEeccc----c---CHHHHHhhccEEEEcCCCCcCccchhHHH
Q 023290 121 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDR-VHFVNKT----L---TVAPYLAAIDVLVQNSQAWGECFGRITIE 191 (284)
Q Consensus 121 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~-v~~~~~~----~---~~~~~~~~ad~~~~ps~~~~e~~~~~~~E 191 (284)
+..++++.|+.... .....+..++.+.++|++.. +...+.. + ...+++....+++.+|. -.++-+...
T Consensus 120 ~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa---~Hm~RA~~~ 196 (259)
T PRK10494 120 PGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSA---SHLPRAMIF 196 (259)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHH
Confidence 67888888864322 22255666778888999875 4443331 2 23345555568888874 556777777
Q ss_pred HHhcCCCEEEcCCC
Q 023290 192 AMAFQLPVLGTAAG 205 (284)
Q Consensus 192 ama~G~Pvi~~~~~ 205 (284)
+-..|..++....+
T Consensus 197 f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 197 FQQEGLNPLPAPAN 210 (259)
T ss_pred HHHcCCceeecCCc
Confidence 77889988876553
No 239
>PRK07283 hypothetical protein; Provisional
Probab=63.41 E-value=38 Score=22.81 Aligned_cols=75 Identities=12% Similarity=0.192 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEc
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 177 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~p 177 (284)
|.+.+.+++.. ..++++|+..+.++ ...+.+.+.++.++++ +......+++...+..--.+ +.
T Consensus 22 G~~~v~~aik~------------gk~~lVi~A~Das~--~~~kk~~~~~~~~~Vp--~~~~~t~~eLG~a~Gk~~~v-va 84 (98)
T PRK07283 22 GEELVVKAIQS------------GQAKLVFLANDAGP--NLTKKVTDKSNYYQVE--VSTVFSTLELSAAVGKPRKV-LA 84 (98)
T ss_pred cHHHHHHHHHc------------CCccEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCceE-EE
Confidence 34566666543 66788888775432 3677777888777664 22223346777777653222 22
Q ss_pred CCCCcCccchhHHH
Q 023290 178 SQAWGECFGRITIE 191 (284)
Q Consensus 178 s~~~~e~~~~~~~E 191 (284)
-. .+||.-.+++
T Consensus 85 i~--d~g~a~~l~~ 96 (98)
T PRK07283 85 VT--DAGFSKKMRS 96 (98)
T ss_pred Ee--ChhHHHHHHH
Confidence 22 4666655554
No 240
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.45 E-value=30 Score=23.14 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=46.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHH--HHhcCCCEEEc
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVLGT 202 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~E--ama~G~Pvi~~ 202 (284)
++++|.|-.-. -..+.+++.+++.|++-.|...+. .++......+|++++.+. -.+-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pq---v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQ---VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChh---HHHHHHHHHHHhccCCCcEEEc
Confidence 45666654322 356678888888887644444333 356566788999887664 222233333 34578999887
Q ss_pred CCCC
Q 023290 203 AAGG 206 (284)
Q Consensus 203 ~~~~ 206 (284)
+...
T Consensus 78 ~~~~ 81 (96)
T cd05564 78 DMMD 81 (96)
T ss_pred ChHh
Confidence 6433
No 241
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=62.34 E-value=94 Score=26.09 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.+..+..+++++++ ....++.++++. .|+++..+. ...-.-.+..|+..|++|++=.
T Consensus 40 ~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 40 PERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcC
Confidence 46678888888765 122578888876 588887765 2322335689999999999864
No 242
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=62.25 E-value=21 Score=23.22 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=32.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++++|.|..-..-....+++.+++.|+.-.+.... ..+.......+|+++....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 45666654222213377888888888654333333 4566677788999997764
No 243
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=61.91 E-value=15 Score=31.28 Aligned_cols=94 Identities=10% Similarity=-0.138 Sum_probs=53.1
Q ss_pred cEEEeccc--------cCHHHHHhhccEEEEcCCCCcCccc-hhHHHHHhcCCCEEEcC--CCCcceeeecCCceeeecC
Q 023290 154 RVHFVNKT--------LTVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLPVLGTA--AGGTTEIVVNGTTGLLHPV 222 (284)
Q Consensus 154 ~v~~~~~~--------~~~~~~~~~ad~~~~ps~~~~e~~~-~~~~Eama~G~Pvi~~~--~~~~~e~v~~~~~g~~~~~ 222 (284)
.|...|.. .....+++...+++..=.+...++= =++..|+..|+-.|.-. .+...+++..+ .-+-++.
T Consensus 203 ~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~-SfI~~~d 281 (349)
T PF00852_consen 203 PVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPN-SFIHVDD 281 (349)
T ss_dssp -EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GG-GSEEGGG
T ss_pred CeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCC-Cccchhc
Confidence 46666652 3567888888888864221123332 37889999996655544 55666666442 2222222
Q ss_pred CCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 223 GKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 223 ~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
- .+++++|+.|..+.+|++++.+.-+
T Consensus 282 f-~s~~~La~yl~~l~~n~~~Y~~yf~ 307 (349)
T PF00852_consen 282 F-KSPKELADYLKYLDKNDELYNKYFE 307 (349)
T ss_dssp S-SSHHHHHHHHHHHHT-HHHHH----
T ss_pred C-CCHHHHHHHHHHHhcCHHHHhhhcc
Confidence 2 2499999999999999998876544
No 244
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=61.85 E-value=33 Score=30.49 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=38.4
Q ss_pred HcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc
Q 023290 148 QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 208 (284)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~ 208 (284)
.+..+.+|+++...-+..++++..|=+.+-+. . .-+||+.||+|+++...+...
T Consensus 203 ~~~~~~r~~ll~edfnpisll~~~dkvy~~ts--~-----mgfeall~~~~~~~fg~p~ya 256 (671)
T COG3563 203 QLSQQHRVHLLAEDFNPISLLQNVDKVYCVTS--Q-----MGFEALLCGKPLTTFGLPWYA 256 (671)
T ss_pred hhccCceEEEecccCChHHHHHhcceeEEeec--c-----ccHHHHhcCCceeeecchhhc
Confidence 33445578888766567788998887655432 2 447999999999998765543
No 245
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=60.34 E-value=53 Score=22.55 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+...++++++ ...++.+++. ..|+++..+. ...-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 66766643332 235566667777654 2246778887 6899888776 44445578899999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 89 v~~EK 93 (120)
T PF01408_consen 89 VLVEK 93 (120)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98865
No 246
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=60.29 E-value=71 Score=25.98 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=45.1
Q ss_pred HHHHhhccEEEEcCCCCcCc-cchhHHHHHhcCCCEEEcCCCCcceee-e------------c----CCceeeecCCCCC
Q 023290 165 APYLAAIDVLVQNSQAWGEC-FGRITIEAMAFQLPVLGTAAGGTTEIV-V------------N----GTTGLLHPVGKEG 226 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~-~~~~~~Eama~G~Pvi~~~~~~~~e~v-~------------~----~~~g~~~~~~d~~ 226 (284)
..-++.||+++..... .|+ |=-.++++. -+.++|....+ +..+. . + ..--++.++..
T Consensus 46 ~~~l~~Adlvv~~G~~-le~~w~~~~~~~~-~~~~~v~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~-- 120 (266)
T cd01018 46 MKKLSEADLYFRIGLG-FEEVWLERFRSNN-PKMQVVNMSKG-ITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPAN-- 120 (266)
T ss_pred HHHHHhCCEEEEcCCc-chHHHHHHHHhhC-CCCeEEECCCC-ceeccccccccccccccccccCCCCCCccCcCHHH--
Confidence 3558899999977652 444 444555533 24455543211 11100 0 0 01123344444
Q ss_pred hHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 227 ~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~ 256 (284)
...+++.|.+.+. +|+......+++.++..
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 152 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLA 152 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 6677777777665 67766666666665554
No 247
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.13 E-value=98 Score=25.66 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=36.1
Q ss_pred HhhccEEEEcCCCCcCccchhHHHH----HhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEA----MAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Ea----ma~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
...+|+++.-. .+| +++.| .-.++|++.-+. |..|++.+.. ++++.+++.++++.
T Consensus 62 ~~~~Dlvi~iG---GDG---T~L~aa~~~~~~~~PilGIN~---------G~lGFLt~~~---~~~~~~~l~~i~~g 120 (287)
T PRK14077 62 FKISDFLISLG---GDG---TLISLCRKAAEYDKFVLGIHA---------GHLGFLTDIT---VDEAEKFFQAFFQG 120 (287)
T ss_pred ccCCCEEEEEC---CCH---HHHHHHHHhcCCCCcEEEEeC---------CCcccCCcCC---HHHHHHHHHHHHcC
Confidence 34689988544 343 44433 335789887765 4457776654 78888899888763
No 248
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=59.41 E-value=28 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=18.4
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHHc
Q 023290 120 VPSVHAVIIGSDMNAQTKFESELRNYVMQK 149 (284)
Q Consensus 120 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 149 (284)
+|+.+++++|+....+.+. ..+.+++.
T Consensus 62 fP~~kfiLIGDsgq~Dpei---Y~~ia~~~ 88 (100)
T PF09949_consen 62 FPERKFILIGDSGQHDPEI---YAEIARRF 88 (100)
T ss_pred CCCCcEEEEeeCCCcCHHH---HHHHHHHC
Confidence 4999999999977665443 33445544
No 249
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=59.02 E-value=84 Score=25.76 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC-Ccceeeec---C--CceeeecCCCCChHHHHHHHHHHh
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVN---G--TTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~-~~~e~v~~---~--~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
..-++.||+++..... .|+|--.+++....+.++|....+ .......+ + .--++.++.. ...+++.|.+.+
T Consensus 45 ~~~l~~Adliv~~G~~-~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~~~~a~~I~~~L 121 (276)
T cd01016 45 VEKLQNADVVFYNGLH-LEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKL--WKYAVKAVAEVL 121 (276)
T ss_pred HHHHHhCCEEEEcCcC-hHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHH--HHHHHHHHHHHH
Confidence 3557899999977653 666666777766444455544222 11111111 1 1123444444 667777777766
Q ss_pred h--CHHHHHHHHHHHHHHHH
Q 023290 239 T--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 239 ~--~~~~~~~~~~~~~~~~~ 256 (284)
. +|+......+++.++..
T Consensus 122 ~~~dP~~~~~y~~N~~~~~~ 141 (276)
T cd01016 122 SEKLPEHKDEFQANSEAYVE 141 (276)
T ss_pred HHHCcccHHHHHHHHHHHHH
Confidence 5 66665555566555444
No 250
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=58.31 E-value=90 Score=26.78 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----cCHHHHHhh----ccEEEEcCCCCcCccchhHHH
Q 023290 120 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAA----IDVLVQNSQAWGECFGRITIE 191 (284)
Q Consensus 120 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~~----ad~~~~ps~~~~e~~~~~~~E 191 (284)
+|+-+++++|-|..-...........+.+.++. |+.++... .-+..++.. .|.+|.|..- .--.|....+
T Consensus 134 nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~-Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-s~I~G~~~y~ 211 (369)
T TIGR00075 134 NPDRKVVFFAIGFETTAPTTASTLLSAKAEDIN-NFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHV-STIIGAKPYA 211 (369)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCC-cEEEEEeccccHHHHHHHHcCCCCCccEEEecCEE-EEEeccchhH
Confidence 378888998887633222333344445555664 66655432 455566644 4889999762 3334556666
Q ss_pred HHh--cCCCEEEcCC
Q 023290 192 AMA--FQLPVLGTAA 204 (284)
Q Consensus 192 ama--~G~Pvi~~~~ 204 (284)
.++ +|+|+|++-.
T Consensus 212 ~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 212 PIAEKYKIPIVIAGF 226 (369)
T ss_pred HHHHHcCCCeEEecc
Confidence 554 6899998853
No 251
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=57.21 E-value=56 Score=21.86 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=46.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH--hcCCCEEEc
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLGT 202 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam--a~G~Pvi~~ 202 (284)
++++|.|.. ..-....+++.+++.|++-.|.-.+. .++......+|++++.+. -.+-..-++.. ..|+||..-
T Consensus 7 Ll~C~~G~s-SS~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pq---i~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 7 LLLCAAGMS-TSLLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQ---VAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEECCCchh-HHHHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECch---HHHHHHHHHHHhhhcCCCEEEe
Confidence 456666543 23356778888888887544433333 456666778999887764 12223334443 347899987
Q ss_pred CCCCc
Q 023290 203 AAGGT 207 (284)
Q Consensus 203 ~~~~~ 207 (284)
+...+
T Consensus 82 ~~~~Y 86 (95)
T TIGR00853 82 NGAQY 86 (95)
T ss_pred Chhhc
Confidence 65443
No 252
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=56.54 E-value=1.3e+02 Score=25.76 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=53.4
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCC-CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~-~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
++.++.+|. .. | ...++++..+ + ++.++-+.+. ..+..++.+++++++ ...
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~-------~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP-------LYC 54 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC-------ccC
Confidence 455677785 32 2 2344555442 4 6777665553 246667788888753 125
Q ss_pred CHHHHHhhccEE--EEcCCCCcCcc-chhHHHHHhcCCCEEEcC
Q 023290 163 TVAPYLAAIDVL--VQNSQAWGECF-GRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 163 ~~~~~~~~ad~~--~~ps~~~~e~~-~~~~~Eama~G~Pvi~~~ 203 (284)
++.+++...|+. ..|+.. ..+. .-...+|+..|+.|++-.
T Consensus 55 ~~eell~d~Di~~V~ipt~~-P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAI-VGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCC-CCccHHHHHHHHHhCCCeEEEcC
Confidence 677777766664 344310 1111 235678999999999875
No 253
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=56.42 E-value=60 Score=29.29 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=49.9
Q ss_pred CeEEEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 122 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 122 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+.-=+++|. +.....+..+.+++++++.|....+..+|.. +.+ .-+...|++|+.+- .+ +++.+.-.+-+|
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKL-aNF~eID~fV~vaC--Pr---~sidd~~~F~KP 355 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKL-ANFEDIDIFVLLGC--SQ---SGIIDSNEFYRP 355 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH-hCCCCCCEEEEccC--CC---cccccHhhCCCc
Confidence 334455665 3344455788899999999988888888886 233 22446999997665 22 345566667777
Q ss_pred EEEc
Q 023290 199 VLGT 202 (284)
Q Consensus 199 vi~~ 202 (284)
||++
T Consensus 356 VlTP 359 (496)
T TIGR00272 356 IVTP 359 (496)
T ss_pred eecH
Confidence 7776
No 254
>PRK12862 malic enzyme; Reviewed
Probab=55.02 E-value=2e+02 Score=27.67 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=55.0
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEecc------------------------ccCHHHHHhhccE
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 173 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~------------------------~~~~~~~~~~ad~ 173 (284)
+-.+.++++.|.|. .---+.++....|+. .+|.+.+. ..++.+.+..+|+
T Consensus 190 ~~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v 264 (763)
T PRK12862 190 DIEDVKLVASGAGA-----AALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADV 264 (763)
T ss_pred ChhhcEEEEEChhH-----HHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCE
Confidence 55788999999875 444555566667775 36665541 0246777888999
Q ss_pred EEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 174 LVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+|-.|. ...|.--+++.|+ ..|+|-.
T Consensus 265 ~iG~s~--~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 265 FLGLSA--AGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 999887 6677778999998 8898865
No 255
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=54.87 E-value=1e+02 Score=25.36 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhc-CCCEEEcCCCCcceee------------e--cC--CceeeecCCCCCh
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIV------------V--NG--TTGLLHPVGKEGI 227 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-G~Pvi~~~~~~~~e~v------------~--~~--~~g~~~~~~d~~~ 227 (284)
..-++.||+++..... .|+|-..++++... +.++|... .++.-+- . ++ .--++.++.. .
T Consensus 47 ~~~l~~Adliv~~G~~-~e~w~~k~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~ 122 (282)
T cd01017 47 IARIADADVFVYNGLG-METWAEKVLKSLQNKKLKVVEAS-KGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVL--A 122 (282)
T ss_pred HHHHHhCCEEEEcCcc-hHHHHHHHHHhcccCCceEEECC-CCccccccccccccccccccccCCCCCCccccCHHH--H
Confidence 3458899999976643 56666677776542 23444321 1111100 0 00 1113444444 5
Q ss_pred HHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 023290 228 TPLAKNIVKLAT--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 228 ~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~ 256 (284)
..+++.|.+.+. +|+......+++.++..
T Consensus 123 ~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~ 153 (282)
T cd01017 123 IQQVENIKDALIKLDPDNKEYYEKNAAAYAK 153 (282)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 667777776665 66665556666655444
No 256
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=54.76 E-value=88 Score=23.37 Aligned_cols=67 Identities=4% Similarity=-0.091 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEE
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLV 175 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~ 175 (284)
-.+...++++..+.. ..-+.-+++.|++ ....+...+++.|. .|...|.. ..-.++.+.||-|+
T Consensus 89 ~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~FI 153 (160)
T TIGR00288 89 VDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIAI 153 (160)
T ss_pred ccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeEE
Confidence 457888888877633 1245545555554 45666666777665 78888854 45567889999988
Q ss_pred EcC
Q 023290 176 QNS 178 (284)
Q Consensus 176 ~ps 178 (284)
.-.
T Consensus 154 ~L~ 156 (160)
T TIGR00288 154 ILG 156 (160)
T ss_pred eCC
Confidence 543
No 257
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=54.73 E-value=1e+02 Score=24.24 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=22.4
Q ss_pred CcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 206 GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 206 ~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
.+++.++-|.-.+++.|-. .+-+.+++.+.....
T Consensus 88 tI~~alr~Gv~DYLiKPf~--~eRl~~aL~~y~~~r 121 (224)
T COG4565 88 TIKEALRYGVVDYLIKPFT--FERLQQALTRYRQKR 121 (224)
T ss_pred HHHHHHhcCchhheeccee--HHHHHHHHHHHHHHH
Confidence 3444445555667888776 788888888776533
No 258
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=54.51 E-value=1.1e+02 Score=24.64 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccc--cCHHHHHhhc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~--~~~~~~~~~a 171 (284)
..|-.+.+..|++-+.. +. ..-.++++|..+. ....+++.+...|-.- .=+|+|.. ......+..-
T Consensus 51 L~kT~~~L~~Aa~~i~~-i~------~~~~Il~Vstr~~----~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P 119 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAA-IE------NPADVVVVSSRPY----GQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEP 119 (249)
T ss_pred HHHHHHHHHHHHHHHHH-Hh------CCCcEEEEEcCHH----HHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCC
Confidence 34556666666655543 32 2233566776541 3455666666554210 01234432 2223334555
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
|++|+... ..=..++.||-..|+|+|+- |+.....+| -+.++.+|.
T Consensus 120 ~llIV~Dp---~~d~qAI~EA~~lnIPvIal~DTds~p~~V-----Dy~IP~Ndd 166 (249)
T PTZ00254 120 RLLIVTDP---RTDHQAIREASYVNIPVIALCDTDSPLEYV-----DIAIPCNNR 166 (249)
T ss_pred CEEEEeCC---CcchHHHHHHHHhCCCEEEEecCCCCcccC-----ceeeCCCCc
Confidence 66665432 11256899999999999965 555555555 355666553
No 259
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=54.12 E-value=12 Score=26.54 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHhhccEEEEcCCCCcCccc--hhHH---HHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 165 APYLAAIDVLVQNSQAWGECFG--RITI---EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~--~~~~---Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
..++..||++|.-- +|-+- ++.+ =|.|+|+|.|+-.......-+++-.+.-.+-... +++..+.|..++
T Consensus 67 ~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et--~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 67 RTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAET--PEQVVEILRYVL 140 (141)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCC--HHHHHHHHHHHh
Confidence 35789999988532 22111 2233 4688999999876655444443322222222223 666666666553
No 260
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=53.90 E-value=1e+02 Score=24.01 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=60.9
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 151 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 151 (284)
..+++.+.......+++++|.-+ +|-|-++- .+.|.. ..-++.+...|+.... ..+......+.++.
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~Gn--NGGDG~Va-AR~L~~-------~G~~V~v~~~~~~~~~---~~~~a~~~~~~l~~ 104 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGN--NGGDGLVA-ARHLKA-------AGYAVTVLLLGDPKKL---KTEAARANLKSLGI 104 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCC--ccHHHHHH-HHHHHh-------CCCceEEEEeCCCCCc---cHHHHHHHHHhhcC
Confidence 55666666433445666777543 45555543 233322 2257788888875432 12333333333444
Q ss_pred CCcEEEeccccCHHHHHhhccEEEEcCCCCcCccc-------hhHHHHHh-cCCCEEEcCCCC
Q 023290 152 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG-------RITIEAMA-FQLPVLGTAAGG 206 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~-------~~~~Eama-~G~Pvi~~~~~~ 206 (284)
...+...... + ....+|++|-.-. .-|+. -.++|.+. .|+|||+-|.+.
T Consensus 105 ~~~v~~~~~~-~---~~~~~dvIVDalf--G~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 105 GGVVKIKELE-D---EPESADVIVDALF--GTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred Ccceeecccc-c---ccccCCEEEEece--ecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 3223222221 1 5778899885433 22221 24556655 899999998763
No 261
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=53.88 E-value=1.1e+02 Score=24.11 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=49.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-------ccCHHHHHhhccEEEEcCCC-------CcC-ccc
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------WGE-CFG 186 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~ad~~~~ps~~-------~~e-~~~ 186 (284)
+.++.++........++.+.+.+..+++|.. .+.++.. .+++.+.+..||++++..-. |.+ +.-
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 4555666554333334667777777888765 2333321 24567789999998875421 111 111
Q ss_pred hhHHHHHhcCCCEEEcCCCC
Q 023290 187 RITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 187 ~~~~Eama~G~Pvi~~~~~~ 206 (284)
-.+-++...|.|++.+..|.
T Consensus 108 ~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 108 DALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred HHHHHHHHcCCEEEEccHHH
Confidence 24556777899998776443
No 262
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=53.82 E-value=59 Score=21.08 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHH
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 167 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (284)
|....++++.+ ...+++++..+-++ .....+..+++..+++ +.+.+...++...
T Consensus 15 G~~~v~kai~~------------gkaklViiA~D~~~--~~~~~i~~~c~~~~Vp--~~~~~s~~eLG~a 68 (82)
T PRK13602 15 GTKQTVKALKR------------GSVKEVVVAEDADP--RLTEKVEALANEKGVP--VSKVDSMKKLGKA 68 (82)
T ss_pred cHHHHHHHHHc------------CCeeEEEEECCCCH--HHHHHHHHHHHHcCCC--EEEECCHHHHHHH
Confidence 56666666654 78889988875443 3778888889988774 4444443455443
No 263
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=53.48 E-value=1.5e+02 Score=25.90 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=51.3
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~- 161 (284)
+..+.+..++..... .+...+..+.+ .++++++++.-.... ..+..++ ..+-...+.+++..
T Consensus 50 ~~~iW~Ha~s~Ge~~---~~~~l~~~l~~-------~~~~~~i~~t~~t~~----~~~~~~~---~~~~~~~~~~~P~d~ 112 (425)
T PRK05749 50 GPLIWFHAVSVGETR---AAIPLIRALRK-------RYPDLPILVTTMTPT----GSERAQA---LFGDDVEHRYLPYDL 112 (425)
T ss_pred CCeEEEEeCCHHHHH---HHHHHHHHHHH-------hCCCCcEEEeCCCcc----HHHHHHH---hcCCCceEEEecCCc
Confidence 445667777766433 33333333333 337777665533221 1121211 11111234455432
Q ss_pred -cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 -LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 -~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+..++. .-|+++... .+.++..+..+-..|+|++..+
T Consensus 113 ~~~~~~~l~~~~Pd~v~~~~---~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 113 PGAVRRFLRFWRPKLVIIME---TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HHHHHHHHHhhCCCEEEEEe---cchhHHHHHHHHHCCCCEEEEe
Confidence 33445554 358876543 3556777777788899998753
No 264
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=53.33 E-value=40 Score=24.33 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=33.7
Q ss_pred hHHHHHhcCCCEE-EcCCCCcceeeec----CCceeeecCCCCChHHHHHHHHHH---hhCHHHHHHH
Q 023290 188 ITIEAMAFQLPVL-GTAAGGTTEIVVN----GTTGLLHPVGKEGITPLAKNIVKL---ATHVERRLTM 247 (284)
Q Consensus 188 ~~~Eama~G~Pvi-~~~~~~~~e~v~~----~~~g~~~~~~d~~~~~~~~~i~~l---~~~~~~~~~~ 247 (284)
.+-+-...|+||| +||...+++.++. -..-++.+..|.++++=.+....+ ++|+-+|..+
T Consensus 68 vi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~~~~~n~HeRDAL 135 (138)
T PF04312_consen 68 VIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYSERYENDHERDAL 135 (138)
T ss_pred HHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhCCCCCCchHHhHh
Confidence 4445567899998 6788888887754 223344555554444444444443 2344444443
No 265
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=52.93 E-value=60 Score=27.22 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=49.0
Q ss_pred EEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 125 AVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 125 l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
=+++|. +.....+..+.+++++++.|....+..++.. +.+..+ ..|+++..+- . -+++...-.+-+|||+
T Consensus 216 GIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aC--P---r~sidd~~~f~kPvlT 288 (308)
T TIGR03682 216 GILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTAC--P---RIAIDDYARFKKPVLT 288 (308)
T ss_pred EEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccC--C---CcccccHhhCCCcccC
Confidence 345554 4445556788899999999988778788875 334333 5999997664 1 1456677777888887
Q ss_pred cC
Q 023290 202 TA 203 (284)
Q Consensus 202 ~~ 203 (284)
+-
T Consensus 289 P~ 290 (308)
T TIGR03682 289 PQ 290 (308)
T ss_pred HH
Confidence 63
No 266
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=52.79 E-value=12 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=14.2
Q ss_pred hhHHHHHhcCCCEEEc
Q 023290 187 RITIEAMAFQLPVLGT 202 (284)
Q Consensus 187 ~~~~Eama~G~Pvi~~ 202 (284)
..+.|++.+|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4799999999999975
No 267
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=52.72 E-value=1.1e+02 Score=23.91 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=75.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccc-cC-HHHHHhhcc
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT-LT-VAPYLAAID 172 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~-~~-~~~~~~~ad 172 (284)
.|-...+..|+.-+.. . ..-++.++|..+. ....+++.+...+-.- .=+++|.. .+ ...-+..=|
T Consensus 49 ~kT~~~L~~A~~~i~~-~-------~~~~ILfVgTk~~----~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pd 116 (204)
T PRK04020 49 RKTDERIRIAAKFLSR-Y-------EPEKILVVSSRQY----GQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPD 116 (204)
T ss_pred HHHHHHHHHHHHHHHH-h-------cCCeEEEEeCCHH----HHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCC
Confidence 3445555555554433 1 2335777787541 4456666776665320 11345532 11 112233456
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
+++..... .+ ..++.||.-.|+|+|+- |.......+ .+.++.+|+++. -...+..++.+. ...+
T Consensus 117 liiv~dp~-~~--~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndds~~-SI~li~~ll~~a------Il~~ 181 (204)
T PRK04020 117 VVVVTDPR-GD--AQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNKGRK-ALALVYWLLARE------ILRE 181 (204)
T ss_pred EEEEECCc-cc--HHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCchHH-HHHHHHHHHHHH------HHHh
Confidence 65544321 22 57999999999999975 555555555 456776664333 333444444322 1222
Q ss_pred HHHHHHhcCHHHHHHHHH
Q 023290 252 YERVKEIFQEHHMAERIA 269 (284)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ 269 (284)
+..+.+.-.|+...+.+.
T Consensus 182 kg~~~~~~~~~v~~~~f~ 199 (204)
T PRK04020 182 RGEIKPDEDLPVPVEDFE 199 (204)
T ss_pred hCccCCCCCCCcCHHHHh
Confidence 333455556666555543
No 268
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=52.06 E-value=7 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.058 Sum_probs=15.8
Q ss_pred HHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHH
Q 023290 189 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 189 ~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
.--|..+|+|+++....-..+.| |.....++....+++++.++|.
T Consensus 8 ~~~A~~~~lp~~~gSDAH~~~~v--G~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 8 AELAEKYGLPFTGGSDAHFLEEV--GRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHHHHTT--EEEE--BSSGGGT--TTTHHHH---------------
T ss_pred HHHHHHcCCCeEeEEcccChhhc--CCEeeecccccccccccccccc
Confidence 33467789999987666566655 4334344322222566666654
No 269
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=51.90 E-value=96 Score=22.98 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=43.7
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC---ChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
.+.+.++|- . ...+...+..+... -+..+.+++..... ..+..+..++.+.+.+ ..+.+.
T Consensus 2 gl~i~~vGD-~----~~rv~~Sl~~~~~~--------~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-- 64 (158)
T PF00185_consen 2 GLKIAYVGD-G----HNRVAHSLIELLAK--------FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-- 64 (158)
T ss_dssp TEEEEEESS-T----TSHHHHHHHHHHHH--------TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE--
T ss_pred CCEEEEECC-C----CChHHHHHHHHHHH--------cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE--
Confidence 456788994 2 22333444443332 34568888864411 1123444455555544 245555
Q ss_pred ccCHHHHHhhccEEEEcCC
Q 023290 161 TLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~ 179 (284)
+++.+.+..||++.....
T Consensus 65 -~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp -SSHHHHHTT-SEEEEESS
T ss_pred -eCHHHhcCCCCEEEEcCc
Confidence 588899999999887663
No 270
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=51.90 E-value=1.3e+02 Score=24.53 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=29.2
Q ss_pred CHHHHHhhc--cEEEEcCCCCcCccchhHHHHHhc--CCCEEEc
Q 023290 163 TVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 202 (284)
Q Consensus 163 ~~~~~~~~a--d~~~~ps~~~~e~~~~~~~Eama~--G~Pvi~~ 202 (284)
++.+.+..+ |++|-.|.. ...|.--++++|+- ..|+|-+
T Consensus 97 ~L~eav~~~kPtvLIG~S~~-~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQ-GGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp SHHHHHHCH--SEEEECSSS-TTSS-HHHHHHCHHHSSSEEEEE
T ss_pred CHHHHHHhcCCCEEEEecCC-CCcCCHHHHHHHhccCCCCEEEE
Confidence 677788888 999988841 56677778899875 5788854
No 271
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=51.80 E-value=27 Score=23.30 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=32.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++++|.|-.-..-....+++..++.|++-.|.-. ...++......+|+++.++.
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~-~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQC-RVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe-cHHHHhhhcCCCCEEEECCc
Confidence 5667776422221256777888888875444332 22456666678899887654
No 272
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=50.89 E-value=72 Score=27.07 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=49.3
Q ss_pred EEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 125 AVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 125 l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
=+++|. +.....+..+.+++++++.|....+..++.. +.+ .-+...|+++..+- . -+++.+.-.+-+|||+
T Consensus 236 GIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL-~nf~eiD~fV~~aC--P---r~sidd~~~f~kPvlT 309 (332)
T TIGR00322 236 GVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKL-LMFDQIDVFVQVAC--P---RIAIDDGYLFNKPLLT 309 (332)
T ss_pred EEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH-hCCCCcCEEEEecC--C---CceecchhhcCCcccc
Confidence 345554 4444556788899999999988778888876 233 33456899997665 1 2466677777888887
Q ss_pred c
Q 023290 202 T 202 (284)
Q Consensus 202 ~ 202 (284)
+
T Consensus 310 P 310 (332)
T TIGR00322 310 P 310 (332)
T ss_pred H
Confidence 6
No 273
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.29 E-value=1.4e+02 Score=24.55 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=22.6
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
..-++.||++|..... .|+|--.+++... +.++|..
T Consensus 47 ~~~l~~Adliv~~G~~-le~~~~~~~~~~~-~~~~i~~ 82 (286)
T cd01019 47 ARKLQEADLVVWIGPD-LEAFLDKVLQGRK-KGKVLTL 82 (286)
T ss_pred HHHHHhCCEEEEeCCC-chHHHHHHHHhcC-cCceEec
Confidence 3557889999987653 5666666666542 3455533
No 274
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=50.10 E-value=1.6e+02 Score=25.08 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc------cCHH----HHHhhccEEEEcCCCCcCccchhHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVA----PYLAAIDVLVQNSQAWGECFGRITI 190 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~------~~~~----~~~~~ad~~~~ps~~~~e~~~~~~~ 190 (284)
.+.++.++|.|. ......+...+.|.. +|.+.... +++. .+...+|+++..|....-..|....
T Consensus 173 ~~k~vLvIGaGe-----m~~l~a~~L~~~g~~-~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYSE-----INRKVAYYLQRQGYS-RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEcccH-----HHHHHHHHHHHcCCC-EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 567899999974 555555556666653 57666543 2222 5567999999753100233455555
Q ss_pred HHHhcCCCEEEcCCCCccee--eecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 023290 191 EAMAFQLPVLGTAAGGTTEI--VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 256 (284)
Q Consensus 191 Eama~G~Pvi~~~~~~~~e~--v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 256 (284)
|.+.--.+-+.-|..-.+++ +....+-.+++ ++++.+.+.+ |.+.|++...++...+.
T Consensus 247 ~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~---n~~~R~~~~~~ae~iI~ 306 (338)
T PRK00676 247 ESLADIPDRIVFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQK---HLQCRKEVNNKHKLSLR 306 (338)
T ss_pred HHHhhccCcEEEEecCCCCCccccccCCcEEEE-----hHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 55442221344454433333 22233344555 5666665543 33445555555554443
No 275
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=49.62 E-value=61 Score=22.58 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 164 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~ 164 (284)
-.+++.|+|+.+.. .....++.++.+.+-...+.|.+..++.
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~eA 109 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEEA 109 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHHH
Confidence 68999999986543 2367888899888877788888765433
No 276
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=49.55 E-value=81 Score=24.00 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=26.9
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccch--hHHHHHh------cCCCEEEcCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGR--ITIEAMA------FQLPVLGTAAG 205 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~--~~~Eama------~G~Pvi~~~~~ 205 (284)
+....++..+|++|.-. .|+|+ =++|++. .++|++..+..
T Consensus 88 ~Rk~~m~~~sda~I~lP----GG~GTL~El~e~~~~~qlg~~~kPiil~n~~ 135 (178)
T TIGR00730 88 ERKAMMAELADAFIAMP----GGFGTLEELFEVLTWAQLGIHQKPIILFNVN 135 (178)
T ss_pred HHHHHHHHhCCEEEEcC----CCcchHHHHHHHHHHHHcCCCCCCEEEECCc
Confidence 44556778999998543 44453 3666765 48999998754
No 277
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=49.44 E-value=1.5e+02 Score=24.35 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=64.6
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccccCH
Q 023290 86 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTLTV 164 (284)
Q Consensus 86 ~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~~~~ 164 (284)
.+++++.-.+.|.++.+++..+. +...+.+=..|.+.. ..-....+.+..|+.- .|.|-|.-+.+
T Consensus 80 ~vl~v~~dsp~~t~~eli~~ak~----------~p~~~~~g~~g~g~~----~hl~~~~l~~~~G~~~~~Vpy~G~~~~~ 145 (274)
T PF03401_consen 80 NVLVVRADSPYKTLEELIEYAKA----------NPGKLTFGSSGPGSS----DHLAAALLAKAAGIKFTHVPYDGGAEAL 145 (274)
T ss_dssp EEEEEETTSS-SSHHHHHHHHHC----------SCCC-EEEESSTTSH----HHHHHHHHHHHHT---EEEE-SSHHHHH
T ss_pred eEEEEeCCCccccHHHHHHHHHh----------CCCCeEEEecCCCch----HHHHHHHHHHHhCCceEEEEeCCccHHH
Confidence 34556666778999999887754 112233333333321 1122334556667642 23333333555
Q ss_pred HHHH-hhccEEEEcCCCCcCccchhHHHHHhcCC-CEEE-c---------CCCCcce-----eeecCCceeeecCCCCCh
Q 023290 165 APYL-AAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-T---------AAGGTTE-----IVVNGTTGLLHPVGKEGI 227 (284)
Q Consensus 165 ~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~-Pvi~-~---------~~~~~~e-----~v~~~~~g~~~~~~d~~~ 227 (284)
..++ .+.|+.+.... ........|. -+|+ + +.+.+.| +.-..-.|++++.+- +
T Consensus 146 ~allgG~vd~~~~~~~--------~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gt--p 215 (274)
T PF03401_consen 146 TALLGGHVDAAFGSPG--------EALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGT--P 215 (274)
T ss_dssp HHHHTTSSSEEEEEHH--------HHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS---
T ss_pred HHHhCCeeeEEeecHH--------HHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCC--C
Confidence 5666 36777664321 2333444443 1222 1 1222222 112233477777765 5
Q ss_pred HH----HHHHHHHHhhCHHHHHHHHHHH
Q 023290 228 TP----LAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 228 ~~----~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
++ +.+++.+++++++..+.+.+.+
T Consensus 216 ~~~~~~l~~a~~~~~~~pe~~~~~~~~g 243 (274)
T PF03401_consen 216 DEIVDKLADAIKKALEDPEFQEFLEKMG 243 (274)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 55 4555555566877666555443
No 278
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=49.20 E-value=1e+02 Score=22.56 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=39.8
Q ss_pred ccE-EEEcCCCCcCccchhHHHHHh-cCCCEEEc---CCCC---c--ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 171 IDV-LVQNSQAWGECFGRITIEAMA-FQLPVLGT---AAGG---T--TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 171 ad~-~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~---~~~~---~--~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|. ++.|.- +...+.++.+|+. .++|+|=. ++-. + ..++.+-..|.++-.+ ++...-++..+++
T Consensus 68 ~dgiiINpga--~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S~is~~a~G~I~G~G---~~gY~lAl~al~~ 141 (146)
T PRK05395 68 ADGIIINPGA--YTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRHHSYISDVAVGVICGFG---ADGYLLALEALAE 141 (146)
T ss_pred CcEEEECchH--HHHHHHHHHHHHHcCCCCEEEEecCCccccccccccccccccceEEEeeCC---HHhHHHHHHHHHH
Confidence 344 456665 6667889999975 58999943 3221 1 1234455567766655 6777777776653
No 279
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=49.09 E-value=1.6e+02 Score=24.70 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 227 ~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
...+++.|.+-+. +|+......+|+.++..+
T Consensus 154 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 186 (311)
T PRK09545 154 ARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ 186 (311)
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence 5566666666555 777776666666665543
No 280
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=48.94 E-value=1.5e+02 Score=24.44 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=30.3
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCCEEEc
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 202 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~Pvi~~ 202 (284)
.++.+.+. .+|++|-.|.. ...|.--+++.|+ +..|+|-.
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 47888888 78999988841 4557778889998 57888854
No 281
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.64 E-value=1.8e+02 Score=25.04 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=60.3
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC---------hHHHHHHHHHHHHcCCCCcEE
Q 023290 86 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVH 156 (284)
Q Consensus 86 ~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~---------~~~~~~l~~~~~~~~~~~~v~ 156 (284)
.++.+|... -...+.+++....+.+ ..+++..-|...+.. .+-...+.+..++.|++--..
T Consensus 102 l~vIAGPCs-IEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~te 171 (352)
T PRK13396 102 VVVVAGPCS-VENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITE 171 (352)
T ss_pred EEEEEeCCc-ccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 344555433 4556778887777655 456666555422211 234566666677777642111
Q ss_pred EeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcC
Q 023290 157 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTA 203 (284)
Q Consensus 157 ~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~ 203 (284)
... ..++..+...+|++-.+++. ... ..+++++ ..|+||+...
T Consensus 172 v~d-~~~v~~~~~~~d~lqIga~~-~~n--~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 172 VMD-AADLEKIAEVADVIQVGARN-MQN--FSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred eCC-HHHHHHHHhhCCeEEECccc-ccC--HHHHHHHHccCCeEEEeC
Confidence 111 24555555669999999973 333 4556554 6799999875
No 282
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=48.27 E-value=85 Score=21.32 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=47.2
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
.+.-..+.+.+..+...++..+.+.+++++.+-+.+.+|.... .. ..-...||+.++..+.+.+-
T Consensus 13 ~~~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~--DD-----------srTLssyGv~sgSvl~Llid 77 (107)
T cd01795 13 VRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILS--DD-----------CATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCCCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceec--cC-----------CccHHhcCCCCCCEEEEEec
Confidence 3445566778888889999999999999999888888887221 11 22246788888877776653
No 283
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.73 E-value=95 Score=24.77 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=31.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHH-HcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
.....+++|+...-..+...++-..++ +.+++ -+.|.+.. ..+...+|.++.||.
T Consensus 40 ~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~---~~is~~aDavff~sv 95 (240)
T COG1646 40 AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLP-VILFPGSP---SGISPYADAVFFPSV 95 (240)
T ss_pred cCCCEEEECCcccccHHHHHHHHHHHHhhcCCC-EEEecCCh---hccCccCCeEEEEEE
Confidence 556678888754333233444444444 55554 45555543 344558999988876
No 284
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=47.62 E-value=86 Score=21.16 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
|....++++.. ..++++++...-+ +.....+..+++..+++ -+.+.+..+++.....
T Consensus 20 G~~~v~kai~~------------gkaklViiA~D~~--~~~~~~i~~~c~~~~Ip-~~~~~~tk~eLG~a~G 76 (99)
T PRK01018 20 GSKRTIKAIKL------------GKAKLVIVASNCP--KDIKEDIEYYAKLSGIP-VYEYEGSSVELGTLCG 76 (99)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCC--HHHHHHHHHHHHHcCCC-EEEECCCHHHHHHHhC
Confidence 45566666644 6788998887543 34788899999988775 2333344466666554
No 285
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.34 E-value=1.5e+02 Score=23.99 Aligned_cols=100 Identities=8% Similarity=-0.055 Sum_probs=61.8
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC---------hHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~---------~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
.|... -..-+.+++....+.+ ..+.++.-|.-.+.. .+....+.+..++.|++ +.-..+
T Consensus 20 aGPC~-vEs~e~~~~~a~~~~~---------~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~--~~Tev~ 87 (250)
T PRK13397 20 VGPCS-IESYDHIRLAASSAKK---------LGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL--SVSEIM 87 (250)
T ss_pred eccCc-cCCHHHHHHHHHHHHH---------cCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC--EEEeeC
Confidence 35433 3445677777666543 566777766532221 23567777888888774 222112
Q ss_pred -ccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCC
Q 023290 161 -TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 204 (284)
Q Consensus 161 -~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~ 204 (284)
..++..+...+|++-.+|+ +..-..+++++ ..|+||+.+.-
T Consensus 88 d~~~v~~~~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 88 SERQLEEAYDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred CHHHHHHHHhcCCEEEECcc---cccCHHHHHHHHccCCeEEEeCC
Confidence 2466666677999999996 44456677666 56999998753
No 286
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=47.24 E-value=97 Score=22.47 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHc--CCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQK--KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.++++.+.|+.+ ..+.+..+..+. +-+-.|..+....+ ...||++.+... +.....-+-...-+.|
T Consensus 26 ~~~~icv~g~~~-----~~~~L~~l~~~~~~~~~i~v~~~~~~~~----~~~C~ilyi~~~---~~~~~~~i~~~~~~~~ 93 (145)
T PF13689_consen 26 SPFRICVLGDDP-----FAEALSTLAGKQVGGRPIRVRRLSSPNE----ISGCHILYISSS---ESSQLPEILRKLPGKP 93 (145)
T ss_pred CCeEEEEECChH-----HHHHHHHhhhcccCCCcEEEEECCCCcc----cccccEEEECCC---ChHHHHHHHHhcCCCc
Confidence 678888888764 566677663222 11223333333333 488999887764 2222222333445777
Q ss_pred EEEc
Q 023290 199 VLGT 202 (284)
Q Consensus 199 vi~~ 202 (284)
|++-
T Consensus 94 vLtI 97 (145)
T PF13689_consen 94 VLTI 97 (145)
T ss_pred eEEE
Confidence 7753
No 287
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=46.99 E-value=1.1e+02 Score=22.37 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=41.2
Q ss_pred hccE-EEEcCCCCcCccchhHHHHHh-cCCCEEEc---CCC---Ccc--eeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDV-LVQNSQAWGECFGRITIEAMA-FQLPVLGT---AAG---GTT--EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~-~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~---~~~---~~~--e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|. ++.|.- +...+.++.+|++ .++|+|=. +.- .++ .++.+...|.+.-.+ ++...-++..+++
T Consensus 67 ~~dgiIINpga--~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~~S~is~~~~G~I~G~G---~~gY~lAl~al~~ 141 (146)
T PRK13015 67 DVAGIVINPGA--YTHTSVAIRDALAALELPVIEVHISNVHAREAFRHHSYVSAIADGVICGLG---TEGYRLALRRLAT 141 (146)
T ss_pred cCCEEEEcchH--HhhhHHHHHHHHHcCCCCEEEEEcCCccccccccccccccCceeEEEeeCC---HHHHHHHHHHHHH
Confidence 3454 456665 6667889999875 58999943 221 121 355555667776665 6788888777653
No 288
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=46.75 E-value=79 Score=21.62 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=42.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH--hcCCCEE
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM--AFQLPVL 200 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam--a~G~Pvi 200 (284)
++++|.|.. .+-..+.+++.+++.|++-.|...+. .++..... .+|++++... -.|-..-++.. ..|+||.
T Consensus 5 LlvCg~G~S-TSlla~k~k~~~~e~gi~~~i~a~~~-~e~~~~~~~~~~DvIll~PQ---i~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 5 LIICAAGMS-SSMMAKKTTEYLKEQGKDIEVDAITA-TEGEKAIAAAEYDLYLVSPQ---TKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred EEECCCchH-HHHHHHHHHHHHHHCCCceEEEEecH-HHHHHhhccCCCCEEEEChH---HHHHHHHHHHHhhhcCCCEE
Confidence 566676642 22356677788888887534433333 34555443 5899887754 11222233333 4789998
Q ss_pred EcCC
Q 023290 201 GTAA 204 (284)
Q Consensus 201 ~~~~ 204 (284)
+-+.
T Consensus 80 ~I~~ 83 (104)
T PRK09590 80 QIPP 83 (104)
T ss_pred EeCH
Confidence 8653
No 289
>PF13169 Poxvirus_B22R_N: Poxvirus B22R protein N-terminal
Probab=46.67 E-value=69 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhcC-CCC
Q 023290 253 ERVKEIFQEHHMAERIAVVLKEVLKKSKS-HLY 284 (284)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 284 (284)
..+...|+|..+.+.+.+.|.+....... .+|
T Consensus 44 ~~l~~~fnWt~I~~~V~~~F~~~C~~~s~~y~Y 76 (92)
T PF13169_consen 44 ERLESKFNWTSIRESVKDEFIKKCNNNSDVYIY 76 (92)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhcCCCCeeEE
Confidence 45667899999999999999988776544 443
No 290
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=46.59 E-value=64 Score=19.60 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEE
Q 023290 23 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 88 (284)
Q Consensus 23 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~ 88 (284)
.+..+...+++.+.+..+++.+...++++|--.+... ....+|+.++..+.+
T Consensus 13 ~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~--------------tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 13 DPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDK--------------TLSDYGIKDGSTIHL 64 (69)
T ss_dssp ETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTS--------------BTGGGTTSTTEEEEE
T ss_pred CCCCCHHHhhhhcccccccccccceeeeeeecccCcC--------------cHHHcCCCCCCEEEE
Confidence 4455666778888999999999999999996553211 124577776664443
No 291
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=46.08 E-value=97 Score=24.50 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccc
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 186 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~ 186 (284)
...+..+++++.|....+.+-+.. +.+..++..+|++++-|. .-|||
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV--nPGfg 145 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV--NPGFG 145 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE--CCCCc
Confidence 567788889999988788887754 778889999999988777 55555
No 292
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=46.02 E-value=1.3e+02 Score=24.05 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccE
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 173 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~ 173 (284)
..|.+.+++.+.. ..+..+++-.-+.+..+....+.+.++++|+..-+.+.+.. +.+..+...+|-
T Consensus 87 ~~~~~~~i~~~~~------------~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~ 154 (244)
T PRK13125 87 VDSLDNFLNMARD------------VGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPL 154 (244)
T ss_pred hhCHHHHHHHHHH------------cCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 4567777766654 33444444332222223556788888999986444444432 567888888887
Q ss_pred EEEcCC
Q 023290 174 LVQNSQ 179 (284)
Q Consensus 174 ~~~ps~ 179 (284)
+++-|.
T Consensus 155 ~l~msv 160 (244)
T PRK13125 155 FIYYGL 160 (244)
T ss_pred EEEEEe
Confidence 764454
No 293
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=45.64 E-value=83 Score=20.45 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHH
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 167 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (284)
|....+++++. ...+++|+..+-+ +.....+..+++..+++ +.+.+...++...
T Consensus 12 G~~~vlkaIk~------------gkakLViiA~Da~--~~~~k~i~~~c~~~~Vp--v~~~~t~~eLG~A 65 (82)
T PRK13601 12 GAKQTLKAITN------------CNVLQVYIAKDAE--EHVTKKIKELCEEKSIK--IVYIDTMKELGVM 65 (82)
T ss_pred chHHHHHHHHc------------CCeeEEEEeCCCC--HHHHHHHHHHHHhCCCC--EEEeCCHHHHHHH
Confidence 45566666643 7888998887543 34788888899988875 4455544555544
No 294
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=45.50 E-value=1.3e+02 Score=24.60 Aligned_cols=71 Identities=8% Similarity=0.152 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
+++.+..+.+.. .+..+.+..+++.. ....++.+++..+|+++..+. .....-...+++..|++|+
T Consensus 30 ~~~el~aV~dr~------~~~a~~~a~~~g~~------~~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVRD------PQRHADFIWGLRRP------PPVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECCC------HHHHHHHHHhcCCC------cccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 567776554432 23445555555421 112567777889999998775 4444445678889999999
Q ss_pred EcCCC
Q 023290 201 GTAAG 205 (284)
Q Consensus 201 ~~~~~ 205 (284)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 86544
No 295
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.30 E-value=1e+02 Score=21.50 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=9.6
Q ss_pred CCeEEEecCCcccc
Q 023290 44 PDTYVVHLGNSKEL 57 (284)
Q Consensus 44 ~~i~vi~~g~~~~~ 57 (284)
.-..|++.|.+.+.
T Consensus 26 ~G~~vi~lG~~vp~ 39 (122)
T cd02071 26 AGFEVIYTGLRQTP 39 (122)
T ss_pred CCCEEEECCCCCCH
Confidence 45678888877653
No 296
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=45.14 E-value=21 Score=24.59 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=24.1
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHH---HHhcCCCEEEcCC
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGTAA 204 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~E---ama~G~Pvi~~~~ 204 (284)
..+..||++|..-.. ...-+.+.+| |.+.|+||++...
T Consensus 57 ~~i~~~D~via~l~~-~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 57 EGIRECDIVIANLDG-FRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHSSEEEEEECS-SS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHCCEEEEECCC-CCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 568999999865431 1111235554 6788999997643
No 297
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.97 E-value=1.7e+02 Score=23.91 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=36.1
Q ss_pred hhccEEEEcCCCCcCccchhHHHHH---h---cCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAM---A---FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eam---a---~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+++.-. ++| +++.|. . .++|++.-+. |..|++.+.. ++++.+.+.++++.
T Consensus 34 ~~~Dlvi~iG---GDG---T~L~a~~~~~~~~~~iPilGIN~---------G~lGFL~~~~---~~~~~~~l~~i~~g 93 (265)
T PRK04885 34 KNPDIVISVG---GDG---TLLSAFHRYENQLDKVRFVGVHT---------GHLGFYTDWR---PFEVDKLVIALAKD 93 (265)
T ss_pred cCCCEEEEEC---CcH---HHHHHHHHhcccCCCCeEEEEeC---------CCceecccCC---HHHHHHHHHHHHcC
Confidence 3678888544 344 555543 2 4889887765 4557777643 78888888888763
No 298
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=44.87 E-value=1.2e+02 Score=22.07 Aligned_cols=94 Identities=12% Similarity=0.160 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhh----cc-EEEEcCCCCcCccchhHHHHHh-cCCCEEEc---CCC-
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA----ID-VLVQNSQAWGECFGRITIEAMA-FQLPVLGT---AAG- 205 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~----ad-~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~---~~~- 205 (284)
..+.+++.++++++ .+.|...- .++...++. +| +++.|.- +...+.++.+|++ .++|+|=. +.-
T Consensus 29 i~~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga--~THtSiAl~DAl~~~~~P~vEVHiSNi~a 104 (141)
T TIGR01088 29 IVEIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGA--LTHTSVALRDALAAVSLPVVEVHLSNVHA 104 (141)
T ss_pred HHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChH--HhhhHHHHHHHHHcCCCCEEEEEcCCccc
Confidence 34444455555554 23333321 344444433 34 4556665 6667889999975 58999943 321
Q ss_pred --Ccc--eeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 206 --GTT--EIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 206 --~~~--e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.++ .++.+-..|.++-.+ ++...-++..++
T Consensus 105 RE~fR~~S~is~~~~G~I~G~G---~~gY~lAl~a~~ 138 (141)
T TIGR01088 105 REEFRHHSYTAPVAGGVIVGLG---AQGYLLALRYLV 138 (141)
T ss_pred cccccccccccccceEEEeecC---HHHHHHHHHHHH
Confidence 111 344455567766655 677777776654
No 299
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.86 E-value=99 Score=23.32 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=42.4
Q ss_pred CHHHHHhhccEEEEcCCCCcC----ccchhHHHHHhcCCCEEEcCC-----CCcceeeecCCceee-ecCCCCChHHHHH
Q 023290 163 TVAPYLAAIDVLVQNSQAWGE----CFGRITIEAMAFQLPVLGTAA-----GGTTEIVVNGTTGLL-HPVGKEGITPLAK 232 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e----~~~~~~~Eama~G~Pvi~~~~-----~~~~e~v~~~~~g~~-~~~~d~~~~~~~~ 232 (284)
.+...+..||+.+.--..-.| .|.-.+-|.|-+++|+|++-. +...++- ....-++ +++.+ -+.+..
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik-~~~~v~v~lt~~N--R~~i~~ 169 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIK-KLGGVYVFLTPEN--RNRILN 169 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhh-hcCCEEEEEccch--hhHHHH
Confidence 455567788999864221122 244456688999999998743 2333332 3323333 56665 456666
Q ss_pred HHHHHhh
Q 023290 233 NIVKLAT 239 (284)
Q Consensus 233 ~i~~l~~ 239 (284)
.|..++.
T Consensus 170 ~Il~~L~ 176 (179)
T COG1618 170 EILSVLK 176 (179)
T ss_pred HHHHHhc
Confidence 6655554
No 300
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=44.28 E-value=1.7e+02 Score=23.78 Aligned_cols=63 Identities=14% Similarity=-0.011 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecc-ccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCC
Q 023290 137 KFESELRNYVMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 204 (284)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~v~~~~~-~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~ 204 (284)
+-...+++..++.|++ +.-..+ ..++..+...+|++-.+|. +.....+++++ ..|+||+.+.-
T Consensus 76 ~gl~~l~~~~~~~Gl~--~~t~~~d~~~~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 76 EGLKLLRRAADEHGLP--VVTEVMDPRDVEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHHhCCC--EEEeeCChhhHHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 3566688888888764 222222 2455556667899999996 44455666554 56999998753
No 301
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=44.20 E-value=1.5e+02 Score=23.04 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=52.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHH--HHHhhc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVA--PYLAAI 171 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~--~~~~~a 171 (284)
+.|-.+..-+|+..+...+++.. |.-...+.+...+...+....+++..++.+++.++...... .++. ++...+
T Consensus 105 kyk~~E~t~~Al~lil~~lk~~~---~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~eLk~~e~VaTs 181 (211)
T COG2454 105 KYKINEKTDKALDLLLEFLKDVE---PKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADFELKELEVVATS 181 (211)
T ss_pred chhhhhHHHHHHHHHHHHHHHcC---CceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCHHHHhcCceeec
Confidence 34445555556555555555432 66666677777777778899999999999999888877765 2332 134455
Q ss_pred cEEEEcC
Q 023290 172 DVLVQNS 178 (284)
Q Consensus 172 d~~~~ps 178 (284)
|..|.-+
T Consensus 182 D~~IIds 188 (211)
T COG2454 182 DSGIIDS 188 (211)
T ss_pred Ceeeeee
Confidence 5555544
No 302
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=44.03 E-value=1.9e+02 Score=24.00 Aligned_cols=71 Identities=8% Similarity=0.123 Sum_probs=40.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-----------------cCHHHHHhhccEEEEcCCCCcC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----------------LTVAPYLAAIDVLVQNSQAWGE 183 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~ad~~~~ps~~~~e 183 (284)
.+-++.|+|.|. .-..+.+..+..|. +|.+.... +++.+++..+|++++... ..
T Consensus 150 ~gk~v~IiG~G~-----iG~avA~~L~~~G~--~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P--~~ 220 (287)
T TIGR02853 150 HGSNVMVLGFGR-----TGMTIARTFSALGA--RVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIP--AL 220 (287)
T ss_pred CCCEEEEEcChH-----HHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCC--hH
Confidence 345678888775 44556666666663 45544321 245667889999998664 22
Q ss_pred ccchhHHHHHhcCCCEE
Q 023290 184 CFGRITIEAMAFQLPVL 200 (284)
Q Consensus 184 ~~~~~~~Eama~G~Pvi 200 (284)
-.+-..++.|.-+.-+|
T Consensus 221 ii~~~~l~~~k~~aliI 237 (287)
T TIGR02853 221 VLTADVLSKLPKHAVII 237 (287)
T ss_pred HhCHHHHhcCCCCeEEE
Confidence 22334555565554444
No 303
>PRK12861 malic enzyme; Reviewed
Probab=43.97 E-value=3.1e+02 Score=26.50 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=54.1
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEecc------------------------ccCHHHHHhhccE
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 173 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~------------------------~~~~~~~~~~ad~ 173 (284)
+-.+.++++.|.|. .---+.++....|+. .+|.+.+. ..++.+.+..+|+
T Consensus 186 ~l~d~~iv~~GAGa-----Ag~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~adv 260 (764)
T PRK12861 186 SIKEVKVVTSGAGA-----AALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADV 260 (764)
T ss_pred ChhHcEEEEECHhH-----HHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCE
Confidence 44688999999875 344455566667774 36665441 0357777899999
Q ss_pred EEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 174 LVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+|-.|. ...|.--++++|+- .|+|-.
T Consensus 261 liG~S~--~g~ft~e~v~~Ma~-~PIIFa 286 (764)
T PRK12861 261 FLGLSA--GGVLKAEMLKAMAA-RPLILA 286 (764)
T ss_pred EEEcCC--CCCCCHHHHHHhcc-CCEEEE
Confidence 999886 66677788899986 788854
No 304
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=43.89 E-value=2.1e+02 Score=24.63 Aligned_cols=53 Identities=4% Similarity=0.023 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCC-ChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 121 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 121 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
-++.+.+++..... .++..+..++.+++.|. .+.+ ..++.+.+..||++...+
T Consensus 200 ~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~--~~~~---~~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 200 FGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG--KFNI---VNSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCCEEEEECCCcccCCHHHHHHHHHHHHHcCC--eEEE---EcCHHHHhCCCCEEEECC
Confidence 46788888864321 22233444445555543 3332 258889999999998775
No 305
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=43.72 E-value=69 Score=26.82 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=39.2
Q ss_pred CeEEEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcCCCCcCccc-hhHHHHHhcCCC
Q 023290 122 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLP 198 (284)
Q Consensus 122 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~-~~~~Eama~G~P 198 (284)
+.--+++|. +.....+..+.+++++++.|....+...|.. .+-..-+...|++|..+- | +++.+.--+-+|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~aC------Pr~~idd~~~f~kP 283 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQIAC------PRLSIDDSKDFYKP 283 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-S-------THHHHT--S--SS-
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEecC------CCcccCchhhcCCc
Confidence 333455664 4444455678888888888887777778875 222233457999997765 3 456677888899
Q ss_pred EEEc
Q 023290 199 VLGT 202 (284)
Q Consensus 199 vi~~ 202 (284)
||++
T Consensus 284 vltP 287 (307)
T PF01866_consen 284 VLTP 287 (307)
T ss_dssp EE-H
T ss_pred ccCH
Confidence 9876
No 306
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.39 E-value=43 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=25.2
Q ss_pred chhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCC
Q 023290 186 GRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGK 224 (284)
Q Consensus 186 ~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d 224 (284)
-.++.||--+|+|||+- |+...++.| -+.+|.+|
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~V-----D~~IP~Nd 203 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGV-----DYVIPGND 203 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccC-----ceeecCCC
Confidence 46899999999999975 666666665 35666665
No 307
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.27 E-value=1.4e+02 Score=24.66 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCccee-ee----cC--CceeeecCCCCChHHHHHHHHHH
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VV----NG--TTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~-v~----~~--~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
..-++.||+++..... .|++=..++....-+.++|.... ++..+ +. ++ +--++.++.+ ...+++.|.+-
T Consensus 61 ~~~l~~Adlvv~~G~~-~E~wl~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~dPH~Wldp~~--~~~~a~~Ia~~ 136 (287)
T cd01137 61 IKKLSKADLILYNGLN-LEPWLERLVKNAGKDVPVVAVSE-GIDPIPLEEGHYKGKPDPHAWMSPKN--AIIYVKNIAKA 136 (287)
T ss_pred HHHHHhCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEecC-CccccccCccccCCCCCCCcCcCHHH--HHHHHHHHHHH
Confidence 3557899998876542 55544445544433445554321 11100 00 00 1113344444 66777777776
Q ss_pred hh--CHHHHHHHHHHHHHHHH
Q 023290 238 AT--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 238 ~~--~~~~~~~~~~~~~~~~~ 256 (284)
+. +|+......+++..+..
T Consensus 137 L~~~dP~~~~~y~~N~~~~~~ 157 (287)
T cd01137 137 LSEADPANAETYQKNAAAYKA 157 (287)
T ss_pred HHHHCcccHHHHHHHHHHHHH
Confidence 65 66666656666555443
No 308
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=42.76 E-value=53 Score=23.40 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=28.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCC----------------CcEEEeccc--cCHHHHHhhccEEEEcC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQ----------------DRVHFVNKT--LTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~----------------~~v~~~~~~--~~~~~~~~~ad~~~~ps 178 (284)
++++|.+.... ...+.+++++++++++ ..+-+.|.. ....+++..||++|.-.
T Consensus 15 ~il~G~g~~~~-~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG 85 (137)
T PF00205_consen 15 VILAGRGARRS-GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIG 85 (137)
T ss_dssp EEEE-HHHHHT-TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEES
T ss_pred EEEEcCCcChh-hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEEC
Confidence 55555532210 1345666666666553 123333332 45678899999998654
No 309
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=42.29 E-value=66 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 148 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 148 (284)
-+...+.+.+.++++ .+++..+++|+|++-....++.+++++..
T Consensus 155 ~d~~~a~~sl~RLa~--------~~~fe~lLvGdGwpi~~~~r~rl~~L~~~ 198 (199)
T PF14597_consen 155 YDPTEARASLRRLAA--------YPDFEWLLVGDGWPIFRDARQRLRELVAT 198 (199)
T ss_dssp S-HHHHHHHHHHHHT---------TT--EEEESBB--B-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--------cccccEEeecCCchhhhhHHHHHHHHHhc
Confidence 456677777777764 37999999999998776677777777653
No 310
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=41.35 E-value=45 Score=22.28 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=35.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
+..+|.|-.-..-....+++..+++|++..+.. -.+.+.......+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~-~~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQ-CAVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeee-EEecccccCCCcccEEEEehH
Confidence 456677643333467788899999988633222 123577778889999986543
No 311
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=40.72 E-value=2.7e+02 Score=24.97 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhc---CCCEEE-cCCCCcce--
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---QLPVLG-TAAGGTTE-- 209 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~---G~Pvi~-~~~~~~~e-- 209 (284)
....+.......|. .|.......+....+.. .|++++--.- .+.-|+.+++.+.. ++|||. |..+.+..
T Consensus 16 ir~~l~~~L~~~G~--~v~~a~~~~~al~~i~~~~~~lvl~Di~m-p~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV 92 (464)
T COG2204 16 IRELLEQALELAGY--EVVTAESAEEALEALSESPFDLVLLDIRM-PGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAV 92 (464)
T ss_pred HHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHH
Confidence 45556666666653 45555444444444443 4667654441 33446677765554 799985 45555443
Q ss_pred -eeecCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 023290 210 -IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 243 (284)
Q Consensus 210 -~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~ 243 (284)
.++.|.-.++..|-+ ++.+...+.+.+.....
T Consensus 93 ~A~k~GA~Dfl~KP~~--~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 93 EALRLGAFDFLEKPFD--LDRLLAIVERALELREL 125 (464)
T ss_pred HHHhcCcceeeeCCCC--HHHHHHHHHHHHHHhhh
Confidence 445566678888988 99999999999876543
No 312
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=40.63 E-value=22 Score=25.38 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHhhccEEEEcCCCCcCccc--hhHH---HHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 165 APYLAAIDVLVQNSQAWGECFG--RITI---EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~--~~~~---Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
..++..||++|.-- +|-+- ++.+ =|.|+|+|.|+-.......-+++-.+.-+.-... +++..+.|..+
T Consensus 70 ~~li~~aDvvVvrF---GekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaet--p~Qvv~iL~Yv 142 (144)
T TIGR03646 70 RKLIEKADVVIALF---GEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVET--PEQAIETLKYI 142 (144)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcC--HHHHHHHHHHh
Confidence 35689999988532 12111 2333 4688999999876554444333322222222222 55555555443
No 313
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=40.30 E-value=2.1e+02 Score=23.61 Aligned_cols=48 Identities=10% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCC--CCcEEEeccc-----cCHHHHHhhccEEEEcC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT-----LTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~--~~~v~~~~~~-----~~~~~~~~~ad~~~~ps 178 (284)
+.-..+++|++..+ + ...-|+ .+++.-+|+. +.+..|+...|+++.--
T Consensus 210 ~~~~vI~vGDs~~D-------l---~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D 264 (277)
T TIGR01544 210 DRSNIILLGDSQGD-------L---RMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQD 264 (277)
T ss_pred CcceEEEECcChhh-------h---hHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECC
Confidence 44568899987421 1 112344 2356655653 45778999999999754
No 314
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=40.23 E-value=38 Score=23.38 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=30.9
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 208 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~ 208 (284)
.++.+++. ..|++|=.+. .+...--+.+++..|+.||+.+-+...
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~--~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTS--SEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SS--CHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCHHHHhcCcCCCEEEECCC--chHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 46777777 8999997654 455555577899999999998765443
No 315
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=39.80 E-value=54 Score=21.28 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=31.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++++|.|..-..-....+++.+++.++...+..... .++...+..+|+++.+..
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~-~~~~~~~~~~Dliist~~ 57 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI-AEVPSLLDDADLIVSTTK 57 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH-HHhhcccCCCcEEEEcCC
Confidence 455666543222356677788877776544433332 344445678999887664
No 316
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=39.63 E-value=1.7e+02 Score=25.50 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=48.8
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccE
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDV 173 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~ 173 (284)
.++.+.+.+...++ ..+++.+++.. ....++..... ..+.++...+.+.++... +|+
T Consensus 36 ~~n~~~l~~q~~~f------------~p~~v~i~~~~-----~~~~l~~~l~~----~~~~v~~G~~~~~~l~~~~~vD~ 94 (385)
T PRK05447 36 GKNVELLAEQAREF------------RPKYVVVADEE-----AAKELKEALAA----AGIEVLAGEEGLCELAALPEADV 94 (385)
T ss_pred CCCHHHHHHHHHHh------------CCCEEEEcCHH-----HHHHHHHhhcc----CCceEEEChhHHHHHhcCCCCCE
Confidence 46777776655543 23555665531 33444433221 123333334567777764 588
Q ss_pred EEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 174 LVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
++.... +...-...++|+..|++|++.+
T Consensus 95 Vv~Ai~--G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 95 VVAAIV--GAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred EEEeCc--CcccHHHHHHHHHCCCcEEEeC
Confidence 887765 2222246889999999999865
No 317
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=39.40 E-value=1.6e+02 Score=25.39 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCe-EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc----ccCHHHHHhhccEEEEcCCCCcCccchhHH-HHHh
Q 023290 121 PSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----TLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMA 194 (284)
Q Consensus 121 ~~~-~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~----~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~-Eama 194 (284)
.+. +++++|.. .+.+++...+.. ..++....- .+++.++++.+|++|...- .. ++..++ -|+.
T Consensus 21 ~~~~~v~va~r~-------~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g--p~-~~~~v~~~~i~ 89 (386)
T PF03435_consen 21 GPFEEVTVADRN-------PEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAG--PF-FGEPVARACIE 89 (386)
T ss_dssp TCE-EEEEEESS-------HHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS--GG-GHHHHHHHHHH
T ss_pred CCCCcEEEEECC-------HHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCc--cc-hhHHHHHHHHH
Confidence 555 88888874 456666665421 224444332 2458889999999998764 22 444444 5688
Q ss_pred cCCCEEEcC
Q 023290 195 FQLPVLGTA 203 (284)
Q Consensus 195 ~G~Pvi~~~ 203 (284)
.|++.|-+.
T Consensus 90 ~g~~yvD~~ 98 (386)
T PF03435_consen 90 AGVHYVDTS 98 (386)
T ss_dssp HT-EEEESS
T ss_pred hCCCeeccc
Confidence 899999843
No 318
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=39.22 E-value=2.8e+02 Score=24.65 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHhcCCCEEEc
Q 023290 189 TIEAMAFQLPVLGT 202 (284)
Q Consensus 189 ~~Eama~G~Pvi~~ 202 (284)
+-...+|.+|||+.
T Consensus 218 aRAi~~s~iPvISA 231 (440)
T COG1570 218 ARAIAASRIPVISA 231 (440)
T ss_pred HHHHHhCCCCeEee
Confidence 33456677888875
No 319
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=38.33 E-value=1.1e+02 Score=26.23 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=50.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcCCCCcCccc-hhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFG-RITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~-~~~~Eama~G~P 198 (284)
..+-+++-..+.....+....+.+..++.|..-....++.. .+-..-+...|+++..+- | +++=+.-.+++|
T Consensus 238 ~~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taC------PRi~iDd~~~f~kP 311 (347)
T COG1736 238 KSFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTAC------PRIPIDDGDRFKKP 311 (347)
T ss_pred CeEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecC------CCcccchHhhhCCc
Confidence 34444443344455556778888888888876555555554 233333557899997664 3 466788899999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
++++.
T Consensus 312 lLTP~ 316 (347)
T COG1736 312 LLTPY 316 (347)
T ss_pred ccChH
Confidence 99874
No 320
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=38.04 E-value=2e+02 Score=28.80 Aligned_cols=62 Identities=11% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHHHHHHHHc-CCCCcEEE-eccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 139 ESELRNYVMQK-KIQDRVHF-VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 139 ~~~l~~~~~~~-~~~~~v~~-~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.+..+.+++.+ +.. -+.+ ....+++.++++.+|+++.... ...-...+..|+..|+++++..
T Consensus 616 ~~~a~~la~~~~~~~-~v~lDv~D~e~L~~~v~~~DaVIsalP--~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 616 LKDAKETVEGIENAE-AVQLDVSDSESLLKYVSQVDVVISLLP--ASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred HHHHHHHHHhcCCCc-eEEeecCCHHHHHHhhcCCCEEEECCC--chhhHHHHHHHHHcCCCEEECc
Confidence 34555565554 211 1222 2233567777788999998665 2222446678889999999774
No 321
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=37.95 E-value=1.7e+02 Score=21.95 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=50.6
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
++..++++|-..=..=-...+.-+.++.+.+.+. ..+++++.+.-.+..+ ..+.++++++..+. +...+.+..+
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~---~~~v~~v~ISvDP~~D--Tp~~L~~Y~~~~~~-~~~~ltg~~~ 125 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE---GKDVQFVFISVDPERD--TPEVLKKYAKKFGP-DFIGLTGSRE 125 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT---TTTEEEEEEESSTTTC---HHHHHHHHHCHTT-TCEEEEEEHH
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc---cCceEEEEEEeCCCCC--CHHHHHHHHHhcCC-CcceeEeCHH
Confidence 5666777764332222344555566666666653 2689999998766543 34677788887653 2344555555
Q ss_pred CHHHHHhhccEEE
Q 023290 163 TVAPYLAAIDVLV 175 (284)
Q Consensus 163 ~~~~~~~~ad~~~ 175 (284)
++.++.....+..
T Consensus 126 ~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 126 EIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHHHCTHCE
T ss_pred HHHHHHHHHHhhh
Confidence 6666655554433
No 322
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=37.86 E-value=1.4e+02 Score=24.20 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 104 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 104 ~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
..|..+.++.. .|++.++++|+|. .-+..++.++.+ +.-++...++..++..
T Consensus 217 ~cFe~I~~Rfg-----~p~~~f~~IGDG~--------eEe~aAk~l~wP--Fw~I~~h~Dl~~l~~a 268 (274)
T TIGR01658 217 QCFKWIKERFG-----HPKVRFCAIGDGW--------EECTAAQAMNWP--FVKIDLHPDSSHRFPG 268 (274)
T ss_pred HHHHHHHHHhC-----CCCceEEEeCCCh--------hHHHHHHhcCCC--eEEeecCCCHHHhCcc
Confidence 44555555553 3799999999985 223456666554 2223333466555543
No 323
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=37.72 E-value=1e+02 Score=24.62 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
.....+++|+...-..+....+.+.+++..++ -|.|.+.. ..+-..+|.++.||.
T Consensus 31 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~---~~i~~~aDa~l~~sv 85 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEENVDELVKAIKEYDLP-VILFPGNI---EGISPGADAYLFPSV 85 (232)
T ss_pred cCCCEEEEcCCCccchHHHHHHHHHHhcCCCC-EEEeCCCc---cccCcCCCEEEEEEE
Confidence 45566788875433333444455555555554 45555543 334456999988875
No 324
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=37.61 E-value=29 Score=14.10 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=7.6
Q ss_pred hHHHHHhcCC
Q 023290 188 ITIEAMAFQL 197 (284)
Q Consensus 188 ~~~Eama~G~ 197 (284)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5788888775
No 325
>CHL00067 rps2 ribosomal protein S2
Probab=37.31 E-value=1.7e+02 Score=23.40 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=34.7
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
-|++++.... .+ ..++.||.-+|+|+|+- |.......+ -+.++.+|++...+ ..+..++
T Consensus 162 P~~iiv~d~~-~~--~~ai~Ea~~l~IPvIaivDTn~~p~~i-----dypIP~Ndds~~si-~li~~~l 221 (230)
T CHL00067 162 PDIVIIIDQQ-EE--YTALRECRKLGIPTISILDTNCDPDLA-----DIPIPANDDAIASI-KLILNKL 221 (230)
T ss_pred CCEEEEeCCc-cc--HHHHHHHHHcCCCEEEEEeCCCCcccc-----ceeeecCCchHHHH-HHHHHHH
Confidence 4565544431 22 36899999999999964 555555655 35566665333333 4444433
No 326
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.28 E-value=1.6e+02 Score=21.36 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=47.4
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 197 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~ 197 (284)
+...-+++++|.+.. ....+..+..+.+. .|...... .++.+..+.||+++...- .. +..--|-+--|.
T Consensus 25 ~~~gk~v~VvGrs~~----vG~pla~lL~~~ga--tV~~~~~~t~~l~~~v~~ADIVvsAtg--~~--~~i~~~~ikpGa 94 (140)
T cd05212 25 RLDGKKVLVVGRSGI----VGAPLQCLLQRDGA--TVYSCDWKTIQLQSKVHDADVVVVGSP--KP--EKVPTEWIKPGA 94 (140)
T ss_pred CCCCCEEEEECCCch----HHHHHHHHHHHCCC--EEEEeCCCCcCHHHHHhhCCEEEEecC--CC--CccCHHHcCCCC
Confidence 446778899998753 44555556555443 45555543 589999999999998764 22 334456666776
Q ss_pred CEE
Q 023290 198 PVL 200 (284)
Q Consensus 198 Pvi 200 (284)
-|+
T Consensus 95 ~Vi 97 (140)
T cd05212 95 TVI 97 (140)
T ss_pred EEE
Confidence 666
No 327
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=37.05 E-value=2.9e+02 Score=24.30 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCC
Q 023290 81 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 132 (284)
Q Consensus 81 ~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~ 132 (284)
+...++|.|.+++...-|-..+|..++++.+.+.+. +++-+=++|.+.
T Consensus 270 SkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~dk----kqISVGfiGYPN 317 (572)
T KOG2423|consen 270 SKEYPTIAFHASINNSFGKGALIQLLRQFAKLHSDK----KQISVGFIGYPN 317 (572)
T ss_pred hhhCcceeeehhhcCccchhHHHHHHHHHHhhccCc----cceeeeeecCCC
Confidence 346778888888887777677888888877665432 566666777643
No 328
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.81 E-value=2.8e+02 Score=23.95 Aligned_cols=92 Identities=12% Similarity=-0.044 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC---------ChHHHHHHHHHHHHcCCCCcEEEecc-ccCHHHHH
Q 023290 99 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNK-TLTVAPYL 168 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~~~-~~~~~~~~ 168 (284)
.+.+++....+.. ..++++.-|...+. ..+....+.+..++.|++ +.-..+ ..++..+.
T Consensus 131 ~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~--~~t~v~d~~~~~~l~ 199 (360)
T PRK12595 131 YEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA--VISEIVNPADVEVAL 199 (360)
T ss_pred HHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC--EEEeeCCHHHHHHHH
Confidence 4555665555533 45566665532111 123456777788888764 222222 24565666
Q ss_pred hhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 204 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~ 204 (284)
..+|++-.+|. +..-..+++++ ..|+||+.+.-
T Consensus 200 ~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 200 DYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HhCCeEEECcc---cccCHHHHHHHHccCCcEEEeCC
Confidence 66999999996 44445666554 56999998754
No 329
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=36.72 E-value=85 Score=19.61 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHhcc--cCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 25 HVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~--~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
..+...+++.+.+..|+ ++.+..++++|-..+.- .....+|+.++..+.+.+
T Consensus 20 ~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~--------------~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 20 DDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD--------------TTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCC--------------CCHHHcCCCCCCEEEEEE
Confidence 34566677778888888 88888888887533311 112457787666555443
No 330
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=36.44 E-value=2.8e+02 Score=23.89 Aligned_cols=83 Identities=11% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----cCHHHHHh----hccEEEEcCCCCcCccchhHHH
Q 023290 120 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLA----AIDVLVQNSQAWGECFGRITIE 191 (284)
Q Consensus 120 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~----~ad~~~~ps~~~~e~~~~~~~E 191 (284)
+|+-++++.|-|..-...........+++.++. |+.++... .-+..++. ..|.+|.|..- .--.|....+
T Consensus 128 nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~-Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-stI~G~~~y~ 205 (364)
T PRK15062 128 NPDKEVVFFAIGFETTAPATAATLLQAKAEGLK-NFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHV-STIIGTEPYE 205 (364)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHHHHHcCCCCCccEEEecCEe-EEEeccchhH
Confidence 378888888887532222223333334445554 66665542 44555664 36789998762 2334555665
Q ss_pred HH--hcCCCEEEcCC
Q 023290 192 AM--AFQLPVLGTAA 204 (284)
Q Consensus 192 am--a~G~Pvi~~~~ 204 (284)
.+ -+|+|++++-.
T Consensus 206 ~l~~~y~~P~VVaGF 220 (364)
T PRK15062 206 FLAEEYGIPVVVAGF 220 (364)
T ss_pred HHHHHcCCCeEEecc
Confidence 55 46899998853
No 331
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=36.26 E-value=1.4e+02 Score=20.51 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
..++++|+...-+. .....++.+++..+++ -+.+.+..+++.....
T Consensus 40 gkaklViiA~D~~~--~~kkki~~~~~~~~Vp-v~~~~~t~~eLG~A~G 85 (108)
T PTZ00106 40 GKAKLVIISNNCPP--IRRSEIEYYAMLSKTG-VHHYAGNNNDLGTACG 85 (108)
T ss_pred CCeeEEEEeCCCCH--HHHHHHHHHHhhcCCC-EEEeCCCHHHHHHHhC
Confidence 67889988875432 3677888888887764 2223354456655544
No 332
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=36.09 E-value=1.4e+02 Score=25.80 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=49.9
Q ss_pred CHHHHHhhccEEEEcCCCCcCcc-chhHHHHHhcC-CCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECF-GRITIEAMAFQ-LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~-~~~~~Eama~G-~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
++...++...++|.-=.+..+-+ -=++.-|+-.| +|||... +....++. ...-+.++.- .+++++++.|.++-+|
T Consensus 243 ~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fvP-~~SfI~vdDF-~s~~ela~ylk~L~~n 319 (372)
T KOG2619|consen 243 CLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGP-PNYENFVP-PDSFIHVDDF-QSPQELAAYLKKLDKN 319 (372)
T ss_pred cceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECC-ccccccCC-CcceEehhhc-CCHHHHHHHHHHhhcC
Confidence 44555666666663211001111 12455566666 6777665 66666764 3233333332 2599999999999999
Q ss_pred HHHHHHHHHHH
Q 023290 241 VERRLTMGKRG 251 (284)
Q Consensus 241 ~~~~~~~~~~~ 251 (284)
+..+.+--+.-
T Consensus 320 ~~~Y~~Yf~WR 330 (372)
T KOG2619|consen 320 PAAYLSYFEWR 330 (372)
T ss_pred HHHHHHHHHHH
Confidence 98887655543
No 333
>PRK06683 hypothetical protein; Provisional
Probab=35.81 E-value=1.2e+02 Score=19.60 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 152 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~ 152 (284)
|....+++++. ...+++++..+-+. ...+.+..+++..+++
T Consensus 15 G~~~v~kaik~------------gkaklViiA~Da~~--~~~~~i~~~~~~~~Vp 55 (82)
T PRK06683 15 GHKRTLEAIKN------------GIVKEVVIAEDADM--RLTHVIIRTALQHNIP 55 (82)
T ss_pred cHHHHHHHHHc------------CCeeEEEEECCCCH--HHHHHHHHHHHhcCCC
Confidence 45566666643 78899988875432 3677788888888775
No 334
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=35.50 E-value=1.7e+02 Score=21.24 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=39.4
Q ss_pred ccE-EEEcCCCCcCccchhHHHHHh-cCCCEEEcCCC--Ccc------eeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 171 IDV-LVQNSQAWGECFGRITIEAMA-FQLPVLGTAAG--GTT------EIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 171 ad~-~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~~~--~~~------e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|. ++.|.- +...+.++..|+. .++|+|=.... ..+ .++.+...|.++-.+ ++...-++..++
T Consensus 66 ~dgiIINpga--~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~~S~is~~~~G~I~G~G---~~gY~lAl~~~~ 138 (140)
T cd00466 66 ADGIIINPGA--YTHTSIALRDALAAVSIPVIEVHISNIHAREEFRHHSVISPVATGVIAGLG---ADGYRLALEALA 138 (140)
T ss_pred CcEEEEcchH--HHHHHHHHHHHHHcCCCCEEEEecCCcccccccccccccccceeEEEEeCC---HHHHHHHHHHHH
Confidence 454 455654 5667889999875 58999943221 112 345555667776665 677777777664
No 335
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.40 E-value=1.3e+02 Score=22.59 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCCCcEEEeccc---cC---HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKT---LT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV 212 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~---~~---~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~ 212 (284)
.+-++.+.+......+|-++++. .+ +..++ ..++...+... .+.....+.++..-|+-+|+.......-.-+
T Consensus 64 ~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll-~~~i~~~~~~~-~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~ 141 (176)
T PF06506_consen 64 FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL-GVDIKIYPYDS-EEEIEAAIKQAKAEGVDVIVGGGVVCRLARK 141 (176)
T ss_dssp HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH-T-EEEEEEESS-HHHHHHHHHHHHHTT--EEEESHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh-CCceEEEEECC-HHHHHHHHHHHHHcCCcEEECCHHHHHHHHH
Confidence 34455555544555677777764 22 33444 44666665542 4456677888999999999887554333334
Q ss_pred cCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 213 NGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 213 ~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.|-.++++.++ .+++..+|.+.+.
T Consensus 142 ~gl~~v~i~sg---~esi~~Al~eA~~ 165 (176)
T PF06506_consen 142 LGLPGVLIESG---EESIRRALEEALR 165 (176)
T ss_dssp TTSEEEESS-----HHHHHHHHHHHHH
T ss_pred cCCcEEEEEec---HHHHHHHHHHHHH
Confidence 46677788776 6888888877654
No 336
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=34.60 E-value=1.8e+02 Score=23.31 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=37.0
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEeccccCHHHHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~ 168 (284)
+--++|.|-... +++..+.+ .....+++|+.. .. ...++....+++ .+++ -|.|.+....+ -
T Consensus 11 ~~liDPdK~~~~--~~~~~~~~---------~gtDai~VGGS~-~~-~~~d~vv~~ik~~~~lP-vilfPg~~~~v---s 73 (230)
T PF01884_consen 11 ATLIDPDKPNPE--EALEAACE---------SGTDAIIVGGSD-TG-VTLDNVVALIKRVTDLP-VILFPGSPSQV---S 73 (230)
T ss_dssp EEEE-TTSS-HH--HHHHHHHC---------TT-SEEEEE-ST-HC-HHHHHHHHHHHHHSSS--EEEETSTCCG-----
T ss_pred EEEECCCCCCcH--HHHHHHHh---------cCCCEEEECCCC-Cc-cchHHHHHHHHhcCCCC-EEEeCCChhhc---C
Confidence 344677765433 33333322 456678888754 12 234444555554 4444 56666654444 4
Q ss_pred hhccEEEEcCC
Q 023290 169 AAIDVLVQNSQ 179 (284)
Q Consensus 169 ~~ad~~~~ps~ 179 (284)
..||.++.||.
T Consensus 74 ~~aDail~~sv 84 (230)
T PF01884_consen 74 PGADAILFPSV 84 (230)
T ss_dssp TTSSEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 68999998876
No 337
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.49 E-value=2.6e+02 Score=23.92 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+.-+.++++.+++ +...+|.. .++... +|++..++. .-.---.++-++..||+|++-.
T Consensus 42 s~~~A~~fAq~~~~~-~~k~y~sy---EeLakd~~vDvVyi~~~--~~qH~evv~l~l~~~K~VL~EK 103 (351)
T KOG2741|consen 42 SLERAKEFAQRHNIP-NPKAYGSY---EELAKDPEVDVVYISTP--NPQHYEVVMLALNKGKHVLCEK 103 (351)
T ss_pred cHHHHHHHHHhcCCC-CCccccCH---HHHhcCCCcCEEEeCCC--CccHHHHHHHHHHcCCcEEecc
Confidence 456677888888886 55555543 445544 488877765 2222236777999999988753
No 338
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=34.19 E-value=55 Score=26.73 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=31.4
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
.++..+...+|+++..|. .+...-.+..|+..|+|+|+...+.
T Consensus 60 ~d~~~l~~~~DvVIdfT~--p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTT--PEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCHHHhcCCCCEEEECCC--hHHHHHHHHHHHHCCCCEEEECCCC
Confidence 355455456899998886 5555567889999999999865543
No 339
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=33.92 E-value=3.8e+02 Score=24.66 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCCcEEEecccc------CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec
Q 023290 140 SELRNYVMQKKIQDRVHFVNKTL------TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 213 (284)
Q Consensus 140 ~~l~~~~~~~~~~~~v~~~~~~~------~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~ 213 (284)
+-++.+....+...+|-++|+.. .+..++ ..++-...... .+-....+.++-+.|.-+|+.+.-......+-
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l-~~~i~~~~~~~-~~e~~~~v~~lk~~G~~~vvG~~~~~~~A~~~ 172 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTF-NLRIEQRSYVT-EEDARGQINELKANGIEAVVGAGLITDLAEEA 172 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh-CCceEEEEecC-HHHHHHHHHHHHHCCCCEEEcCchHHHHHHHh
Confidence 44444444444556777777742 233333 34444433331 34445678888999999999887666666677
Q ss_pred CCceeeecCCCCChHHHHHHHHHHhh
Q 023290 214 GTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 214 ~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+.+|++... .+++..++.+.+.
T Consensus 173 g~~g~~~~s----~e~i~~a~~~A~~ 194 (538)
T PRK15424 173 GMTGIFIYS----AATVRQAFEDALD 194 (538)
T ss_pred CCceEEecC----HHHHHHHHHHHHH
Confidence 888887763 5788888887765
No 340
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=33.92 E-value=2.1e+02 Score=24.36 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhh-ccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~-ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~ 203 (284)
....+.+.+++.|+. +.-.++. +.+.-+-.. +|++=.+|. +-.-..+++++| .|+|||.+.
T Consensus 77 ~~~~L~~~~~~~Gi~--~~stpfd~~svd~l~~~~v~~~KIaS~---~~~n~pLL~~~A~~gkPvilSt 140 (329)
T TIGR03569 77 DHRELKEYCESKGIE--FLSTPFDLESADFLEDLGVPRFKIPSG---EITNAPLLKKIARFGKPVILST 140 (329)
T ss_pred HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCEEEECcc---cccCHHHHHHHHhcCCcEEEEC
Confidence 467788888888763 3333333 233333333 677777774 555566776655 599999875
No 341
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.65 E-value=1.4e+02 Score=19.67 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCCEEE-cCCCC---cc
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLG-TAAGG---TT 208 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi~-~~~~~---~~ 208 (284)
....++...+..+.. .+......++....+. ..|++++-... ...-+..+++.+. .+.|+|. ++... ..
T Consensus 10 ~~~~l~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~d~iiid~~~-~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 10 IRELLEKLLERAGYE-EVTTASSGEEALELLKKHPPDLIIIDLEL-PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHSTESEEEEESSS-SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHHhCCCC-EEEEECCHHHHHHHhcccCceEEEEEeee-ccccccccccccccccccccEEEecCCCCHHHHH
Confidence 344444455443321 2333333233333332 35666665431 2233444444433 3677774 33322 23
Q ss_pred eeeecCCceeeecCCCCChHHHHHHHH
Q 023290 209 EIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 209 e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
+.++.|..+++..|.+ ++++.++|.
T Consensus 88 ~~~~~g~~~~l~kp~~--~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFS--PEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSS--HHHHHHHHH
T ss_pred HHHHCCCCEEEECCCC--HHHHHHhhC
Confidence 4556688899999988 888888763
No 342
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=33.08 E-value=1.7e+02 Score=24.27 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc--c-cCHHHHHhhccEEE
Q 023290 99 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-LTVAPYLAAIDVLV 175 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--~-~~~~~~~~~ad~~~ 175 (284)
.+-..+|+..+.+ +.++.+++|++++. +.+++..... .+.+.+.+. . +|+. +|+.||.+|
T Consensus 190 ~~Yy~~Ai~~i~~-------~~~~~~f~ifSDD~-------~w~k~~l~~~--~~~~~~~~~~~~~~Dl~-lms~C~~~I 252 (298)
T PF01531_consen 190 KDYYKKAIEYIRE-------KVKNPKFFIFSDDI-------EWCKENLKFS--NGDVYFSGNNSPYEDLY-LMSQCKHFI 252 (298)
T ss_pred HHHHHHHHHHHHH-------hCCCCEEEEEcCCH-------HHHHHHHhhc--CCcEEEECCCCHHHHHH-HHHhCCcEE
Confidence 4556677777765 33788999999853 3333333322 234455543 2 5665 689999998
Q ss_pred EcC
Q 023290 176 QNS 178 (284)
Q Consensus 176 ~ps 178 (284)
.+.
T Consensus 253 isn 255 (298)
T PF01531_consen 253 ISN 255 (298)
T ss_pred ECC
Confidence 763
No 343
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=32.89 E-value=2.3e+02 Score=21.77 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=41.6
Q ss_pred cEEEEcCCCCcCccchhHHHHHh--cCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMA--FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama--~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
+++++.... ..||..+-+|++. .|+|||+.-. ...+ .+.+..++.+.+++.+.|.++.+
T Consensus 71 rvVlLdGIt-~aGFNivDi~~l~~~tg~PVi~V~~----------------k~P~--~e~i~~Al~k~f~d~e~R~rii~ 131 (185)
T COG1628 71 RVVLLDGIT-FAGFNIVDIEALYKETGLPVIVVYR----------------KKPD--IERIESALRKHFDDAEERIRIIE 131 (185)
T ss_pred cEEEECCee-eccceEecHHHHHHhhCCcEEEEEe----------------cCCC--HHHHHHHHHHhCCCHHHHHHHHH
Confidence 455555543 6788888888877 7999997521 1112 67788888888888887776555
Q ss_pred HHH
Q 023290 250 RGY 252 (284)
Q Consensus 250 ~~~ 252 (284)
.+-
T Consensus 132 ~~g 134 (185)
T COG1628 132 SAG 134 (185)
T ss_pred hCC
Confidence 443
No 344
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=32.45 E-value=98 Score=18.12 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
..|.+.|.... .....+++++...|- .+. . .+. ..++.+|.+.. +. ......|...|+|+|..
T Consensus 2 ~~~~i~g~~~~---~~~~~l~~~i~~~Gg--~v~--~---~~~---~~~thvI~~~~---~~-~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPS---EERDELKELIEKLGG--KVT--S---SVS---KKTTHVIVGSD---AG-PKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCC---cCHHHHHHHHHHcCC--EEe--c---ccc---CCceEEEECCC---CC-chHHHHHHHcCCeEecH
Confidence 45777776421 257888888888863 221 1 111 46677777664 21 12277889999999976
Q ss_pred C
Q 023290 203 A 203 (284)
Q Consensus 203 ~ 203 (284)
+
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 345
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=32.23 E-value=1e+02 Score=23.86 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=22.9
Q ss_pred EEEEeccccc-cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 023290 86 LFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 131 (284)
Q Consensus 86 ~i~~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~ 131 (284)
+.+++||+.| ..|+..+++.+..- -+-.++.+|+.
T Consensus 6 ~~v~iGRFQPfH~GHl~~I~~al~~-----------~devII~IGSA 41 (196)
T PRK13793 6 YLVFIGRFQPFHLAHMQTIEIALQQ-----------SRYVILALGSA 41 (196)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHh-----------CCEEEEEEccC
Confidence 4568999998 68887776654331 44455667763
No 346
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.12 E-value=82 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=25.5
Q ss_pred HHHHhhccEEEEcCCCCcCccc--hhHHHHHhcCCCEEEcCCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~--~~~~Eama~G~Pvi~~~~~ 205 (284)
.-+...+|++|... .++| .-+.|++..++||+.-+..
T Consensus 86 ~~m~~~sda~Ivlp----GG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 86 FILVRSADVVVSVG----GGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHCCEEEEcC----CchhHHHHHHHHHHcCCCEEEEECC
Confidence 34567899987543 2334 2578999999999766543
No 347
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=31.92 E-value=2.3e+02 Score=22.47 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=35.5
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
-|++++... ..-..++.||.-.|+|+|+- |....+..+ -+.++.+|+ .-.....+..++.
T Consensus 156 Pd~vii~d~---~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~i-----dypIP~Ndd-s~~si~li~~~l~ 216 (225)
T TIGR01011 156 PDLLFVIDP---VKEKIAVAEARKLGIPVVAIVDTNCDPDLV-----DYPIPGNDD-AIRSIRLLTNLIA 216 (225)
T ss_pred CCEEEEeCC---CccHHHHHHHHHcCCCEEEEeeCCCCCccc-----ceeeecCCc-hHHHHHHHHHHHH
Confidence 466655443 11256899999999999965 555545544 355666553 3344444444443
No 348
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.82 E-value=87 Score=22.95 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCcEEEeccc----cCHHHHHhhccEEEEcCCC------CcC--ccchhHHHHHhcCCCEEEcCCC
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQA------WGE--CFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~----~~~~~~~~~ad~~~~ps~~------~~e--~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
.+.+++..+++|+. +..+... +++.+.+..||++++..-. .+. +.-..+-|+...|.|++.+..|
T Consensus 2 ~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG 78 (154)
T PF03575_consen 2 VEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG 78 (154)
T ss_dssp HHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred HHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence 45566777777763 6555543 3677788899988765311 011 1123466788889888877533
No 349
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=31.52 E-value=88 Score=23.05 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=33.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC---cEEEeccccCHHHHHhhcc
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD---RVHFVNKTLTVAPYLAAID 172 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~---~v~~~~~~~~~~~~~~~ad 172 (284)
........+.+.++....+ | +++.+|+...+.......++..+.+....+ .|.+.=-.+++..+|++++
T Consensus 45 ~~~~~~~~~~l~~~i~~~k------P--~vI~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~~~~A~lY~~S~ 116 (150)
T PF14639_consen 45 RERKEEDMERLKKFIEKHK------P--DVIAVGGNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVDDEVARLYSNSK 116 (150)
T ss_dssp SS-SHHHHHHHHHHHHHH----------SEEEE--SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TTHHHHHTSH
T ss_pred hHHHHHHHHHHHHHHHHcC------C--eEEEEcCCChhHHHHHHHHHHHHHHhhhcccCCCceEEEECcHHHHHHhcCH
Confidence 3334555565666555432 4 445555544444445666777777664211 1211111167888888776
Q ss_pred EEE
Q 023290 173 VLV 175 (284)
Q Consensus 173 ~~~ 175 (284)
..-
T Consensus 117 rA~ 119 (150)
T PF14639_consen 117 RAA 119 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 350
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=31.51 E-value=3.3e+02 Score=23.21 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=44.8
Q ss_pred ccccHHHHHHHHHHHHHHHHh-hccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccE
Q 023290 95 RGKGQDLFLHSFYESLELIKE-KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDV 173 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~-~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~ 173 (284)
..-..+.+.+.........+. .|...|.+-++=+|.......+...+--++.++. ...+.|.|..+--.-+-..+||
T Consensus 148 ~~p~~e~L~~~A~~~a~~a~~~~Gi~~PrVAlLn~Gse~~kg~~~~~eA~~Ll~~~--~~~l~f~G~ie~~dl~~g~~DV 225 (334)
T PRK05331 148 VDCKPEHLVQFAVMGSVYAEAVLGIENPRVGLLNIGEEEIKGNELVKEAYELLKAA--DSSINFIGNVEGRDILKGTADV 225 (334)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCCCHHHHHHHHHHHcc--CCCceEEeeccCCCcCCCCCCE
Confidence 344455665554322222221 2334477777766654333322333333333332 1247777776211123468999
Q ss_pred EEEcCCCCcCccchhHHHHH
Q 023290 174 LVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eam 193 (284)
+++-.. ..+.-++.+|.+
T Consensus 226 vV~DGf--tGNv~LK~~EG~ 243 (334)
T PRK05331 226 VVCDGF--VGNVALKTSEGT 243 (334)
T ss_pred EEECCc--hhHHHHHHHHHH
Confidence 996554 222233444554
No 351
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=31.34 E-value=2.8e+02 Score=22.35 Aligned_cols=80 Identities=8% Similarity=0.033 Sum_probs=52.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-----cC---HHHHHhhccEEEEcCCCCcCccchhHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LT---VAPYLAAIDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-----~~---~~~~~~~ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
+..++++.|+...........+++.+-+.|++..-.++... ++ ..+++..-++.|.++. -.++-++.-|
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~---fHm~RA~~ia 157 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR---FHCERALFIA 157 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHHH
Confidence 55677888864333223556678888888998876666542 22 2344555557777764 4567788888
Q ss_pred HhcCCCEEEcC
Q 023290 193 MAFQLPVLGTA 203 (284)
Q Consensus 193 ma~G~Pvi~~~ 203 (284)
-..|..+++..
T Consensus 158 ~~~Gi~~~~~~ 168 (239)
T PRK10834 158 LHMGIQAQCYA 168 (239)
T ss_pred HHcCCceEEEe
Confidence 88899887664
No 352
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=31.27 E-value=2.6e+02 Score=23.33 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc---CHHHHHhhccEEEEcCCCCcCccch--hHHHHHhcCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLAAIDVLVQNSQAWGECFGR--ITIEAMAFQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~---~~~~~~~~ad~~~~ps~~~~e~~~~--~~~Eama~G~P 198 (284)
++.++|.|.... ....+.......|. .+.+..... .....+..-|+++..|.+ +++-.+ .+-.|-..|.|
T Consensus 44 ~I~i~G~G~S~~--~A~~~~~~l~~~g~--~~~~~~~~~~~~~~~~~~~~~d~~i~iS~s-G~t~~~~~~~~~ak~~g~~ 118 (321)
T PRK11543 44 KVVVSGIGKSGH--IGKKIAATLASTGT--PAFFVHPAEALHGDLGMIESRDVMLFISYS-GGAKELDLIIPRLEDKSIA 118 (321)
T ss_pred cEEEEecChhHH--HHHHHHHHHHcCCC--ceeecChHHHhhCCcCccCCCCEEEEEeCC-CCcHHHHHHHHHHHHcCCe
Confidence 678888875321 33444444444554 344433221 111345777999998873 222211 23356677999
Q ss_pred EEEcCC
Q 023290 199 VLGTAA 204 (284)
Q Consensus 199 vi~~~~ 204 (284)
+|+-..
T Consensus 119 vI~iT~ 124 (321)
T PRK11543 119 LLAMTG 124 (321)
T ss_pred EEEEEC
Confidence 997543
No 353
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.17 E-value=3.1e+02 Score=22.84 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=35.3
Q ss_pred hhccEEEEcCCCCcCccchhHHHHH----hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAM----AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eam----a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+++.-. .+| +++++. ..++||+.-+. |..|++.+.. ++++.++|.++++.
T Consensus 61 ~~~d~vi~~G---GDG---t~l~~~~~~~~~~~Pvlgin~---------G~lGFl~~~~---~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDLVIVVG---GDG---SLLGAARALARHNVPVLGINR---------GRLGFLTDIR---PDELEFKLAEVLDG 118 (295)
T ss_pred cCCCEEEEEe---CcH---HHHHHHHHhcCCCCCEEEEeC---------CcccccccCC---HHHHHHHHHHHHcC
Confidence 3578887544 333 444443 35788887665 4567776543 78999999988763
No 354
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=31.13 E-value=85 Score=25.33 Aligned_cols=115 Identities=15% Similarity=0.263 Sum_probs=55.8
Q ss_pred ccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc--cc
Q 023290 20 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GK 97 (284)
Q Consensus 20 ~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~--~k 97 (284)
++.-|....+-+..-+.+ .+...++++|+.|-.+.+ ++..+.+|-|.+-. .|
T Consensus 109 ~lIFSAGlgdvI~~vL~q-~~~~~~Nv~VvSN~M~Fd-------------------------~~g~l~gF~~~lIH~~NK 162 (246)
T PF05822_consen 109 LLIFSAGLGDVIEEVLRQ-AGVFHPNVKVVSNFMDFD-------------------------EDGVLVGFKGPLIHTFNK 162 (246)
T ss_dssp EEEEEEEEHHHHHHHHHH-TT--BTTEEEEEE-EEE--------------------------TTSBEEEE-SS---TT-H
T ss_pred EEEEeCCcHHHHHHHHHH-cCCCCCCeEEEeeeEEEC-------------------------CcceEeecCCCceEEeeC
Confidence 455566667766664444 477778899999877654 24456666665422 34
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC--Cc---EEEeccc--cCHHHHHhh
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--DR---VHFVNKT--LTVAPYLAA 170 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~--~~---v~~~~~~--~~~~~~~~~ 170 (284)
+-.. ++.- ...+.++ ..-.+++.|+...+. .. .-|++ ++ |-|+... +.+..|+..
T Consensus 163 n~~~-l~~~-~~~~~~~------~R~NvlLlGDslgD~-~M---------a~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~ 224 (246)
T PF05822_consen 163 NESA-LEDS-PYFKQLK------KRTNVLLLGDSLGDL-HM---------ADGVPDEENVLKIGFLNDKVEENLEKYLEA 224 (246)
T ss_dssp HHHH-HTTH-HHHHCTT------T--EEEEEESSSGGG-GT---------TTT-S--SEEEEEEEE-SSHHHHHHHHHCC
T ss_pred Cccc-ccCc-hHHHHhc------cCCcEEEecCccCCh-Hh---------hcCCCccccEEEEEecccCHHHHHHHHHhc
Confidence 4322 3211 1111121 344578889743211 01 11221 23 4444433 347889999
Q ss_pred ccEEEEcC
Q 023290 171 IDVLVQNS 178 (284)
Q Consensus 171 ad~~~~ps 178 (284)
.|+++.--
T Consensus 225 yDIVlv~D 232 (246)
T PF05822_consen 225 YDIVLVDD 232 (246)
T ss_dssp SSEEEET-
T ss_pred CCEEEECC
Confidence 99999753
No 355
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=31.11 E-value=1e+02 Score=20.46 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=21.6
Q ss_pred HHHhhccEEEEcCCCCcCccchhHH---HHHhcCCCEEE
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITI---EAMAFQLPVLG 201 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~---Eama~G~Pvi~ 201 (284)
..+..||.+++..- ++.....-+ -|..+|++|+-
T Consensus 55 ~~L~~cD~i~~l~g--We~S~GA~~E~~~A~~lGl~V~~ 91 (92)
T PF14359_consen 55 AMLSDCDAIYMLPG--WENSRGARLEHELAKKLGLPVIY 91 (92)
T ss_pred HHHHhCCEEEEcCC--cccCcchHHHHHHHHHCCCeEee
Confidence 45669998876544 444444544 46778998873
No 356
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=73 Score=23.13 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=36.3
Q ss_pred EEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-CCcceeee
Q 023290 155 VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVV 212 (284)
Q Consensus 155 v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~~~e~v~ 212 (284)
..++|+. +.+.++...|.+++.-. ++ .+++.++..++|.|.... .-..|.+.
T Consensus 48 l~v~~F~~~~kiQsli~darIVISHa---G~---GSIL~~~rl~kplIv~pr~s~y~elvD 102 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDARIVISHA---GE---GSILLLLRLDKPLIVVPRSSQYQELVD 102 (161)
T ss_pred cEEEeechHHHHHHHhhcceEEEecc---Cc---chHHHHhhcCCcEEEEECchhHHHhhh
Confidence 4555553 68889999999877433 23 288999999999986543 44555553
No 357
>PRK09190 hypothetical protein; Provisional
Probab=30.54 E-value=2.8e+02 Score=22.04 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHH------cCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQ------KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~------~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
..+.++|+..+... .....+.+.++. ++++ +......+++...+....+.+..-. ..+|.-.+++.+
T Consensus 126 gk~~Lvi~A~DaS~--~t~kKl~~~~~~~~~~~~~~Vp--~v~~~tk~eLg~AlGr~~~~~vav~--d~gfA~~l~~~~ 198 (220)
T PRK09190 126 GEAAALIHASDGAA--DGKRKLDQARRALVHETGREIP--VIGLFTAAELGLAFGRENVIHAALL--AGGAAERVVKRA 198 (220)
T ss_pred CCceEEEEeccCCh--hHHHHHHHHHHhhcccccCCcc--EEEecCHHHHHHHhCCCceeEEEEc--ChHHHHHHHHHH
Confidence 66788888764433 256777777766 4443 3333444778888876655444433 455665555443
No 358
>PLN02825 amino-acid N-acetyltransferase
Probab=29.85 E-value=2.3e+02 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCc
Q 023290 81 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 154 (284)
Q Consensus 81 ~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (284)
..+.++|-+.|..-...++..++.-+..+.. -.++++++-++. ..+.++.++.+++..
T Consensus 16 rgktfVIk~gG~~l~~~~~~~l~~DialL~~---------lGi~~VlVHGgg-------pqI~~~l~~~gi~~~ 73 (515)
T PLN02825 16 RGSTFVVVISGEVVAGPHLDNILQDISLLHG---------LGIKFVLVPGTH-------VQIDKLLAERGREPK 73 (515)
T ss_pred CCCEEEEEECchhhcCchHHHHHHHHHHHHH---------CCCCEEEEcCCC-------HHHHHHHHHcCCCce
Confidence 3567888887877544467777777766644 567777665543 577778888887543
No 359
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.80 E-value=2.6e+02 Score=21.48 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCc---------CccchhHHHHHhcCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG---------ECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~---------e~~~~~~~Eama~G~Pvi~~~ 203 (284)
....+.+.++.++. .+.+....++ +..+|.+|+|..... .+....+.++...|+|++..-
T Consensus 11 n~~~~~~~l~~~g~--~v~~~~~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 11 NLRSVANALKRLGV--EAVVSSDPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred hHHHHHHHHHHCCC--cEEEEcChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEEC
Confidence 35666667777775 3555433222 467899998874110 122334667778899999874
No 360
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.70 E-value=2.7e+02 Score=21.64 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccc-cC-HHHHHhhcc
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT-LT-VAPYLAAID 172 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~-~~-~~~~~~~ad 172 (284)
.|-...+..|+.-+... ..-++.++|..+. ....+++.+...|-.- +=+++|.. .+ ...-+..-|
T Consensus 43 ~kT~~~L~~A~~~i~~i--------~~~~ILfVgtk~~----~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pd 110 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRI--------EPEDILVVSARIY----GQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPE 110 (196)
T ss_pred HHHHHHHHHHHHHHHHh--------hCCeEEEEecCHH----HHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCC
Confidence 34445555555444332 1336788887542 3445666666654211 12345542 11 112245566
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+++.... ..-..++.||..+|+|+|+- |.......+ -+.++.+|++ -.-...+..++.
T Consensus 111 lliv~dp---~~~~~Av~EA~~l~IP~Iai~DTn~dp~~v-----dypIP~Ndds-~~Si~li~~lla 169 (196)
T TIGR01012 111 VVVVTDP---RADHQALKEASEVGIPIVALCDTDNPLRYV-----DLVIPTNNKG-RHSLALIYWLLA 169 (196)
T ss_pred EEEEECC---ccccHHHHHHHHcCCCEEEEeeCCCCCccC-----CEEECCCCch-HHHHHHHHHHHH
Confidence 7665432 11257899999999999964 555555655 3566666643 333344444443
No 361
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=29.54 E-value=3.6e+02 Score=23.01 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC------ChHHHHHHHHHHHHcCCCCcEEEeccc--cCH--HHHH
Q 023290 99 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNKT--LTV--APYL 168 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~------~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~--~~~~ 168 (284)
.+.+++++..+.+.++..+...| ++-++|=.+.. ..|..+-+...++++.- ..+...|+. +.+ ....
T Consensus 181 ~e~i~~~i~~~~~~l~~~gi~~P--rIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~-~g~~v~GP~paDt~F~~~~~ 257 (332)
T PRK03743 181 KERVLDYIQRCTKALEKLGIKNP--KIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQE-MGINVEGPVPADSVFHLALQ 257 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHH-CCCcccCCCCchhhcccccc
Confidence 45556666666666665554445 55676632221 12344445555554421 134445664 222 2344
Q ss_pred hhccEEEEcCCCCcCccchhHHHH--------HhcCCCEEEc--CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEA--------MAFQLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Ea--------ma~G~Pvi~~--~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
...|+++.... -. |+..+-+ +..|+|+|-| |.|..-++... |. . ++.++.++|.-..
T Consensus 258 ~~~D~vvaMYH--DQ--GliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGk---g~-A-----~~~S~~~Ai~lA~ 324 (332)
T PRK03743 258 GRYDAVLSLYH--DQ--GHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIAGT---GK-A-----SSVSMEEAILLAA 324 (332)
T ss_pred cCCCEEEEccc--cc--CChhheecccCCceEEecCCCeeEeCCCCcchhhhhcC---CC-C-----CHHHHHHHHHHHH
Confidence 67899997665 22 3333333 3459999954 45555555422 22 1 2788999887653
No 362
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=29.51 E-value=23 Score=27.49 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
...++.+++. +|.|-|.. .-+..+|..-.+.|.|.+ |+++.|+|+....-+-..
T Consensus 111 ~~~Ie~~ir~-----YVaFSG~NFPhilvPLMe~~~vMiNp~R------PLViYESMs~~l~~Ld~~ 166 (218)
T PF12119_consen 111 PALIESFIRS-----YVAFSGQNFPHILVPLMEEHQVMINPAR------PLVIYESMSFELDRLDFT 166 (218)
T ss_pred HHHHHHHHHH-----HhcccCCCCcHHhhhhHhhcCeeecCCC------ceEEeEeeEEEecccCCC
Confidence 4556666665 68887753 557789999999999999 999999999876655443
No 363
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.38 E-value=3.6e+02 Score=23.14 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=22.8
Q ss_pred hccEEEEcCCCCcCccchhH---HHHH--hcCCCEEEcCCCCc
Q 023290 170 AIDVLVQNSQAWGECFGRIT---IEAM--AFQLPVLGTAAGGT 207 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~---~Eam--a~G~Pvi~~~~~~~ 207 (284)
..|++|...-+....||... ..|. -.|+|+|+.-...+
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~EN 122 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEEN 122 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccC
Confidence 56888764433355566543 3433 37999998854433
No 364
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.20 E-value=3.2e+02 Score=22.36 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=35.4
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhc-----CCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAF-----QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~-----G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+++.-. ++| +++.|... .+|++.-+.+ |..|++.+.. ++++.+++.++++.
T Consensus 38 ~~~D~vi~lG---GDG---T~L~a~~~~~~~~~~pilgIn~~--------G~lGFL~~~~---~~~~~~~l~~i~~g 97 (264)
T PRK03501 38 KNANIIVSIG---GDG---TFLQAVRKTGFREDCLYAGISTK--------DQLGFYCDFH---IDDLDKMIQAITKE 97 (264)
T ss_pred CCccEEEEEC---CcH---HHHHHHHHhcccCCCeEEeEecC--------CCCeEcccCC---HHHHHHHHHHHHcC
Confidence 4578888544 333 55655532 5677765552 4568886654 78888988888763
No 365
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=29.15 E-value=2e+02 Score=22.06 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCC-------C--cCccchhHHHHHhcCCCEEEc
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------W--GECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~-------~--~e~~~~~~~Eama~G~Pvi~~ 202 (284)
...+.+..+..+. .+.+....++ ...+|.+++|.-. + ..++--.+.++...|+||++.
T Consensus 12 ~~~l~~~~~~~G~--~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 12 FTDLDPLAREPGV--DVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred HHHHHHHHhcCCc--eEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 4566666666654 4666655544 4577888888641 0 001112355777789999875
No 366
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=29.14 E-value=1.6e+02 Score=18.70 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 24 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 24 s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
...+...+++.+.+..++++++..+++.|-..+. . ....+|+.++..+.++.+
T Consensus 20 ~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d--------------~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 20 PDETVEGLKKRISQRLKVPKERLALLHRETRLSS--------------G-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCC--------------C-cHHHcCCCCCCEEEEEee
Confidence 3445666777777777888888888877643321 1 135678877666655543
No 367
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.06 E-value=2.8e+02 Score=23.57 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhh-ccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~-ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~ 203 (284)
....+.+.+++.|+. +.-..+. +.+..+... ++++=.+|. +-.-..++|+++ .|+|||.+.
T Consensus 78 ~~~~L~~~~~~~Gi~--~~stpfd~~svd~l~~~~v~~~KI~S~---~~~n~~LL~~va~~gkPvilst 141 (327)
T TIGR03586 78 WHKELFERAKELGLT--IFSSPFDETAVDFLESLDVPAYKIASF---EITDLPLIRYVAKTGKPIIMST 141 (327)
T ss_pred HHHHHHHHHHHhCCc--EEEccCCHHHHHHHHHcCCCEEEECCc---cccCHHHHHHHHhcCCcEEEEC
Confidence 456677778888763 3333332 233223233 677777774 444566777665 589999774
No 368
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=29.06 E-value=3.7e+02 Score=23.03 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=48.1
Q ss_pred CCeEEEEEecCCCCC-hHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEE-EcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLV-QNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~-~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~-~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.+..+++.-...+.. ..+...+++...++++.++|.++..+ .++.+++.+--+| +.|. +-+-|+.-|+|
T Consensus 269 a~t~liikhHpmdrg~idy~~~i~~~~~q~~v~~RvlYvhd~-~lpvllr~a~GmVTvNsT--------sGlsal~h~~P 339 (403)
T COG3562 269 AGTNLIIKHHPMDRGFIDYPRDIKRRFVQYEVKGRVLYVHDV-PLPVLLRHALGMVTVNST--------SGLSALLHGMP 339 (403)
T ss_pred cccceEEEeccccccchhhHHHHHHHHHHhccCceEEEecCC-CchHHHHhccceEEEccc--------cchHHHhcCCc
Confidence 456677766533322 34677788888999999999988765 5566666553333 3332 44557888888
Q ss_pred EEEc
Q 023290 199 VLGT 202 (284)
Q Consensus 199 vi~~ 202 (284)
|-+-
T Consensus 340 vkvl 343 (403)
T COG3562 340 VKVL 343 (403)
T ss_pred eeee
Confidence 8764
No 369
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=29.02 E-value=4.3e+02 Score=23.74 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc--ccccHHHHHHHHHH--HHHHHHhhc-
Q 023290 43 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDLFLHSFYE--SLELIKEKK- 117 (284)
Q Consensus 43 ~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~--~~k~~~~~~~a~~~--l~~~~~~~~- 117 (284)
.+++.++..+..++.....-... ..++.+++|++ ++.+....+. ..||.+..+.++.. +.+......
T Consensus 97 ~p~~ifv~~TC~t~iIGdDle~v-----a~~~~~~~gip---VV~v~~~Gf~~~~tqg~d~~Laa~~~~~~~~~~~~~~~ 168 (457)
T CHL00073 97 NPSVIVWIGTCTTEIIKMDLEGM-----APKLEAEIGIP---IVVARANGLDYAFTQGEDTVLAAMAHRCPEQEVSTSES 168 (457)
T ss_pred CCCEEEEEccCcHHhhccCHHHH-----HHHHHHhhCCC---EEEEeCCCccCcCCcchhHHHHHhHHhhhhhhcCcccc
Confidence 45666666665554433222111 23444455543 4444444555 37899999988865 322111000
Q ss_pred --------------------cCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhhccEEEE
Q 023290 118 --------------------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQ 176 (284)
Q Consensus 118 --------------------~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ad~~~~ 176 (284)
-....-.+.++|.-+.. ....++.+.+++|+.-+..+.... +++..+= .+-+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~---~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~-~~~~~c~ 244 (457)
T CHL00073 169 KETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPST---VASQLTLELKRQGIKVSGWLPSQRYTDLPSLG-EGVYVCG 244 (457)
T ss_pred ccccccccccccccccccccccCCCCcEEEEEecCcc---cHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC-cccEEEE
Confidence 00012258889986533 468899999999997554444222 4554433 3333332
Q ss_pred cCCCCcCccchhHHHHH--hcCCCEEEcCCC
Q 023290 177 NSQAWGECFGRITIEAM--AFQLPVLGTAAG 205 (284)
Q Consensus 177 ps~~~~e~~~~~~~Eam--a~G~Pvi~~~~~ 205 (284)
.+. +-+ ...+++ -+|+|.+..+.+
T Consensus 245 ~~P--~ls---~aa~~Le~~~gvp~~~~P~P 270 (457)
T CHL00073 245 VNP--FLS---RTATTLMRRRKCKLIGAPFP 270 (457)
T ss_pred cCc--chH---HHHHHHHHHhCCceeecCCc
Confidence 232 222 334444 578898877654
No 370
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.62 E-value=2.4e+02 Score=20.64 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=45.1
Q ss_pred CeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccc--cHHHHHHHHHHHHHHHHhhccCCCC
Q 023290 45 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPS 122 (284)
Q Consensus 45 ~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k--~~~~~~~a~~~l~~~~~~~~~~~~~ 122 (284)
.+.++..|+.-....... ..+.+.... ..+.+++.+|.-+... +.+.+.+.+..+...+.+. .++
T Consensus 21 ~~~v~n~g~~G~~~~~~~---------~~l~~~~~~-~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~---~~~ 87 (169)
T cd01828 21 DVKVANRGISGDTTRGLL---------ARLDEDVAL-QPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKH---FPN 87 (169)
T ss_pred CCceEecCcccccHHHHH---------HHHHHHhcc-CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHH---CCC
Confidence 466777777655433211 222223322 3467788888766543 3677777777777666553 278
Q ss_pred eEEEEEecCC
Q 023290 123 VHAVIIGSDM 132 (284)
Q Consensus 123 ~~l~i~G~~~ 132 (284)
.++++++-.+
T Consensus 88 ~~vi~~~~~p 97 (169)
T cd01828 88 IKIVVQSILP 97 (169)
T ss_pred CeEEEEecCC
Confidence 8888887643
No 371
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.46 E-value=4.6e+02 Score=23.89 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=49.1
Q ss_pred CeEEEEEecCCCC--ChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHH--hc
Q 023290 122 SVHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AF 195 (284)
Q Consensus 122 ~~~l~i~G~~~~~--~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam--a~ 195 (284)
+-.+.|+|....+ ......+++++.+.+|+.-++.+.+.. +++.. +..|++-|.++. . .+..+.++| -+
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~--~--~g~~~A~~Le~~f 232 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYR--E--IGLMAAEYLKEKF 232 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEech--H--HHHHHHHHHHHHh
Confidence 3457888864321 123568899999999998777766532 55544 477888777664 2 345556666 57
Q ss_pred CCCEEE
Q 023290 196 QLPVLG 201 (284)
Q Consensus 196 G~Pvi~ 201 (284)
|+|.+.
T Consensus 233 GiP~i~ 238 (511)
T TIGR01278 233 GQPYIT 238 (511)
T ss_pred CCCccc
Confidence 999874
No 372
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=28.31 E-value=3.7e+02 Score=22.76 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc------c--------CHHHHHhhccEEEEcCCCCcCccc
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------L--------TVAPYLAAIDVLVQNSQAWGECFG 186 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~------~--------~~~~~~~~ad~~~~ps~~~~e~~~ 186 (284)
|+. ++|+|+... .....+...+.+|+. |.-.|.. + +++..+.+..++++... + ++
T Consensus 76 pd~-VLIIGGp~A----Vs~~yE~~Lks~Git--V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~Gw---D-y~ 144 (337)
T COG2247 76 PDL-VLIIGGPIA----VSPNYENALKSLGIT--VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGW---D-YA 144 (337)
T ss_pred Cce-EEEECCCCc----CChhHHHHHHhCCcE--EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEecc---c-cH
Confidence 444 455665432 334555556677763 3333321 2 33334445556665553 2 22
Q ss_pred hhHHHHHhcC-CCEEEcC
Q 023290 187 RITIEAMAFQ-LPVLGTA 203 (284)
Q Consensus 187 ~~~~Eama~G-~Pvi~~~ 203 (284)
-.++|+|--| +|++.++
T Consensus 145 ~~~~e~~k~~~~p~~~~n 162 (337)
T COG2247 145 DALMELMKEGIVPVILKN 162 (337)
T ss_pred HHHHHHHhcCcceeEecc
Confidence 2899999998 5666654
No 373
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=28.23 E-value=2.2e+02 Score=20.07 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce
Q 023290 141 ELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 209 (284)
Q Consensus 141 ~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e 209 (284)
...+.+++ +. .|.+.... +++.+.+..+|+++..+. ..+.-.+++++ -++-.|++...|+..
T Consensus 10 ~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~---~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 10 EEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSG---TPLTAEVLEAA-PNLKLISTAGAGVDN 73 (133)
T ss_dssp HHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTT---STBSHHHHHHH-TT-SEEEESSSSCTT
T ss_pred HHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCC---CCcCHHHHhcc-ceeEEEEEcccccCc
Confidence 33344444 33 56666643 678889999999997653 24667888888 888888887777654
No 374
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.13 E-value=2.8e+02 Score=21.38 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=21.5
Q ss_pred eecCCCCChHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 023290 219 LHPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~ 256 (284)
+.++.+ ...+++.|.+.+. +|+......+++.++..
T Consensus 111 Wldp~~--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~ 148 (203)
T cd01145 111 WLDPNN--APALAKALADALIELDPSEQEEYKENLRVFLA 148 (203)
T ss_pred ecCHHH--HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444 6667777766665 67666666666655444
No 375
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=28.12 E-value=2.4e+02 Score=20.66 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=44.1
Q ss_pred CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccc--cHHHHHHHHHHHHHHHHhhccCCC
Q 023290 44 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVP 121 (284)
Q Consensus 44 ~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k--~~~~~~~a~~~l~~~~~~~~~~~~ 121 (284)
..+.++..|+.-....... ..+.....-...+.+++++|.-+... ..+.+.+-+..+...++.. .|
T Consensus 22 ~~~~v~n~g~~G~t~~~~~---------~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~---~p 89 (174)
T cd01841 22 KGKTVNNLGIAGISSRQYL---------EHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREE---FP 89 (174)
T ss_pred CCCeEEecccccccHHHHH---------HHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHH---CC
Confidence 3566777776654332211 12212221123467777888766543 4677777777777766653 37
Q ss_pred CeEEEEEecCC
Q 023290 122 SVHAVIIGSDM 132 (284)
Q Consensus 122 ~~~l~i~G~~~ 132 (284)
+.++++++-.+
T Consensus 90 ~~~vi~~~~~p 100 (174)
T cd01841 90 NTKIYLLSVLP 100 (174)
T ss_pred CCEEEEEeeCC
Confidence 88888887543
No 376
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=28.12 E-value=81 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHhhccEEEEcCCCC------cCcc-----chhHHHHHhcCCCEEEcCCC
Q 023290 167 YLAAIDVLVQNSQAW------GECF-----GRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~------~e~~-----~~~~~Eama~G~Pvi~~~~~ 205 (284)
.-..||++++|...- .-|. ...+++++..|+||++...+
T Consensus 50 ~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg 99 (207)
T TIGR02536 50 EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPG 99 (207)
T ss_pred hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecc
Confidence 456888888876520 0111 14588999999999998644
No 377
>PF08472 S6PP_C: Sucrose-6-phosphate phosphohydrolase C-terminal; InterPro: IPR013679 This is the Sucrose-6-phosphate phosphohydrolase (S6PP or SPP) C-terminal domain [] as found in plant sucrose phosphatases. These enzymes irreversibly catalyse the last step in sucrose synthesis following the formation of Sucrose-6-Phosphate via sucrose-phosphate synthase (SPS). ; GO: 0000287 magnesium ion binding, 0050307 sucrose-phosphate phosphatase activity, 0005986 sucrose biosynthetic process
Probab=27.84 E-value=1.1e+02 Score=21.93 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=41.7
Q ss_pred ccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 18 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 18 ~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
.+-+..|+...++++.- ..+..+.|.|.|++...... -+.++.-+|...++..-+++-++..
T Consensus 38 rgEVe~se~~~~~LK~~------~~~~g~~vhPsGvE~slh~~----------Id~Lr~~yGdkqgK~frvWVDrv~~ 99 (133)
T PF08472_consen 38 RGEVENSEEYFQRLKSV------CHPNGTFVHPSGVEKSLHDS----------IDALRSCYGDKQGKKFRVWVDRVRS 99 (133)
T ss_pred hcccCCcHHHHHHhhhh------hccCcCEEccccccccHHHH----------HHHHHHHhhhhcCcEEEEEEEeeeE
Confidence 34456666666665553 55666788888887654332 3778999998777766678877765
No 378
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=27.83 E-value=2.3e+02 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 174 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~ 174 (284)
.++.++++|+|. +-...+++++++ +.-+....|+.+++..-|..
T Consensus 423 ~K~~yvvIgdG~--------eee~aAK~ln~P--fwrI~~h~Dl~~l~~aL~~~ 466 (468)
T KOG3107|consen 423 RKVVYVVIGDGV--------EEEQAAKALNMP--FWRISSHSDLDALYSALELE 466 (468)
T ss_pred CceEEEEecCcH--------HHHHHHHhhCCc--eEeeccCccHHHHhhhcccc
Confidence 588999999985 223456666553 33344446888888766543
No 379
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=27.77 E-value=4.2e+02 Score=23.25 Aligned_cols=53 Identities=4% Similarity=-0.029 Sum_probs=32.1
Q ss_pred CCeEEEEEecCCCC-ChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 121 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 121 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
-++.+.+++..... .++..+..++.+++.|. .+.+ .+++.+.+..||++...+
T Consensus 217 lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~--~i~~---~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 217 FGMDVTLAHPEGYDLMPEVVEVAKKNAKASGG--SFRQ---VNSMEEAFKDADIVYPKS 270 (395)
T ss_pred cCCEEEEECCCccCCCHHHHHHHHHHHHHcCC--eEEE---EcCHHHHhCCCCEEEEcC
Confidence 45789998875321 12233333444555542 3433 258889999999998764
No 380
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=27.73 E-value=2.8e+02 Score=21.15 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=16.5
Q ss_pred EEeccccc-cccHHHHHHHHHH
Q 023290 88 AIINSVSR-GKGQDLFLHSFYE 108 (284)
Q Consensus 88 ~~~g~~~~-~k~~~~~~~a~~~ 108 (284)
+|.|++.| +.|+..+++.+.+
T Consensus 3 l~~GrF~P~H~GHl~~i~~a~~ 24 (181)
T cd02168 3 VYIGRFQPFHNGHLAVVLIALE 24 (181)
T ss_pred EEeeccCCCCHHHHHHHHHHHH
Confidence 57899997 7898888776554
No 381
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=27.73 E-value=5.7e+02 Score=24.74 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEecc------------------------ccCHHHHHhhccE
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDV 173 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~------------------------~~~~~~~~~~ad~ 173 (284)
+..+.++++.|.|. .---+.++....|+. .+|.+.+. ..++.+.+..+|+
T Consensus 182 ~~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v 256 (752)
T PRK07232 182 KIEDVKIVVSGAGA-----AAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADV 256 (752)
T ss_pred ChhhcEEEEECccH-----HHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCE
Confidence 55789999999885 444455556566774 45655431 1357778889999
Q ss_pred EEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 174 LVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+|-.|. ...|.--+++.|+ ..|+|-.
T Consensus 257 ~iG~s~--~g~~~~~~v~~M~-~~piifa 282 (752)
T PRK07232 257 FLGLSA--AGVLTPEMVKSMA-DNPIIFA 282 (752)
T ss_pred EEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 998887 6667778999998 4888854
No 382
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.53 E-value=2.4e+02 Score=20.29 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCC-ChHHHHHHHHHHHHcCCCCc-EEEeccc----cC---HHHHHhhc---cEEEEcCCCCcCccchh
Q 023290 121 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDR-VHFVNKT----LT---VAPYLAAI---DVLVQNSQAWGECFGRI 188 (284)
Q Consensus 121 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~-v~~~~~~----~~---~~~~~~~a---d~~~~ps~~~~e~~~~~ 188 (284)
+.-.+++.|+.... .....+.+++.+.+.+++.. |...+.. ++ ...++... ++.+.++. -..+-+
T Consensus 34 ~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~---~H~~Ra 110 (150)
T cd06259 34 PAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLLVTSA---YHMPRA 110 (150)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEECCH---HHHHHH
Confidence 55566777764432 22355667777777777654 4433321 22 33445554 57777664 333445
Q ss_pred HHHHHhcCC
Q 023290 189 TIEAMAFQL 197 (284)
Q Consensus 189 ~~Eama~G~ 197 (284)
...+-.++.
T Consensus 111 ~~~~~~~~~ 119 (150)
T cd06259 111 LLIFRKAGL 119 (150)
T ss_pred HHHHHHcCC
Confidence 555555554
No 383
>PRK08223 hypothetical protein; Validated
Probab=27.52 E-value=3.5e+02 Score=22.52 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=28.1
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchh--HH-HHHhcCCCEEEcCCCCc
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRI--TI-EAMAFQLPVLGTAAGGT 207 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~--~~-Eama~G~Pvi~~~~~~~ 207 (284)
++..+++..+|+++..+. .-.+... +- -|...|+|+|.....++
T Consensus 109 ~n~~~ll~~~DlVvD~~D--~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 109 ENADAFLDGVDVYVDGLD--FFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred cCHHHHHhCCCEEEECCC--CCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 567888999999986543 1111221 22 46778999998755444
No 384
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.96 E-value=1.4e+02 Score=26.16 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=42.5
Q ss_pred HhhccEEEEcCCCCcC----ccchhHHHHHhcCCCEEEcCCCCcce------eeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGE----CFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e----~~~~~~~Eama~G~Pvi~~~~~~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
|.--|+.+.|++.... .....+.+.+.+..|+|.++-.+..+ +-+.|.-|++-... +++++.+.|.++
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~--~~e~l~~eI~~v 87 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNM--SIEAQRKEIEKV 87 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCC--CHHHHHHHHHHH
Confidence 3344677777652111 13346778999999999876544332 22345566655333 388888888776
Q ss_pred hh
Q 023290 238 AT 239 (284)
Q Consensus 238 ~~ 239 (284)
-.
T Consensus 88 k~ 89 (404)
T PRK06843 88 KT 89 (404)
T ss_pred Hh
Confidence 53
No 385
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.81 E-value=3.6e+02 Score=22.43 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=25.7
Q ss_pred CHHHHHhhccEEEEcCCCCc-----------Ccc--chhHHHHHhcCCCEEEcC
Q 023290 163 TVAPYLAAIDVLVQNSQAWG-----------ECF--GRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~-----------e~~--~~~~~Eama~G~Pvi~~~ 203 (284)
...+.+..||++++|-..-. +.. ....++.|--|..+++..
T Consensus 48 ~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~G~ 101 (296)
T PRK08306 48 SLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIFSGI 101 (296)
T ss_pred cHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEEEec
Confidence 34567899999998833100 111 235788888887667543
No 386
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.80 E-value=2.7e+02 Score=20.79 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCeEEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 023290 83 EDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 130 (284)
Q Consensus 83 ~~~~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~ 130 (284)
.+.+++++|.-+. ....+.+.+.+..+.+.+... .++.++++++-
T Consensus 68 pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~---~~~~~iiv~~~ 114 (191)
T cd01836 68 FDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAK---FPGARVVVTAV 114 (191)
T ss_pred CCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhh---CCCCEEEEECC
Confidence 4567778887554 345677777777777766652 37888888775
No 387
>PLN00203 glutamyl-tRNA reductase
Probab=26.73 E-value=5e+02 Score=23.78 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=49.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhc-----CCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF-----QLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-----G~P 198 (284)
+++++... .+..+.+...++ ...+.+.. .+++...+..||+++..+.+..--+.-..++.+.. |.|
T Consensus 292 ~V~V~nRs-------~era~~La~~~~-g~~i~~~~-~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~ 362 (519)
T PLN00203 292 KMVVVNRS-------EERVAALREEFP-DVEIIYKP-LDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGK 362 (519)
T ss_pred eEEEEeCC-------HHHHHHHHHHhC-CCceEeec-HhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCC
Confidence 45666553 244455555542 11222222 24677888999999876531011122234444421 578
Q ss_pred EEEcCCCCcceee---ecCCceeeecCCCCChHHHHH
Q 023290 199 VLGTAAGGTTEIV---VNGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 199 vi~~~~~~~~e~v---~~~~~g~~~~~~d~~~~~~~~ 232 (284)
.+.-|..-.+++= .+-.+-.+++.+| ..++++
T Consensus 363 ~~~IDLAvPRdIdp~v~~l~~v~lydiDd--L~~i~~ 397 (519)
T PLN00203 363 RLFVDISVPRNVGACVSELESARVYNVDD--LKEVVA 397 (519)
T ss_pred eEEEEeCCCCCCccccccCCCCeEEEecc--HHHHHH
Confidence 8888876555432 2222345666554 444433
No 388
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=26.66 E-value=5.2e+02 Score=24.00 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHH-cCCC-----CcEEEeccc-------------------------cCHHHH
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQ-----DRVHFVNKT-------------------------LTVAPY 167 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~-----~~v~~~~~~-------------------------~~~~~~ 167 (284)
.-.+.+++++|.|.-.-. ..+.+...... .|++ .+|.+.+.. .++.+.
T Consensus 318 ~l~d~riv~~GAGsAgig-ia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 396 (581)
T PLN03129 318 DLADQRILFAGAGEAGTG-IAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEA 396 (581)
T ss_pred chhhceEEEECCCHHHHH-HHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHH
Confidence 446889999998752211 22333332222 4552 466665421 145566
Q ss_pred Hhh--ccEEEEcCCCCcCccchhHHHHHh--cCCCEEEc
Q 023290 168 LAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 202 (284)
Q Consensus 168 ~~~--ad~~~~ps~~~~e~~~~~~~Eama--~G~Pvi~~ 202 (284)
+.. +|++|-.|.. ...|.-.++++|+ +..|+|-.
T Consensus 397 v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 397 VKAIKPTVLIGLSGV-GGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred HhccCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 676 8999987752 3557778899998 78888854
No 389
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=26.39 E-value=1.6e+02 Score=17.96 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=42.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.++.+.+ +.... ...+.+.++++.+|- .+ .. .+-..++.+|.... .........+...|+|+|
T Consensus 7 ~g~~f~i-~~~~~---~~~~~l~~~i~~~GG--~v--~~------~~~~~~thvI~~~~---~~~~~k~~~~~~~~i~iV 69 (78)
T PF00533_consen 7 EGCTFCI-SGFDS---DEREELEQLIKKHGG--TV--SN------SFSKKTTHVIVGNP---NKRTKKYKAAIANGIPIV 69 (78)
T ss_dssp TTEEEEE-SSTSS---SHHHHHHHHHHHTTE--EE--ES------SSSTTSSEEEESSS---HCCCHHHHHHHHTTSEEE
T ss_pred CCEEEEE-ccCCC---CCHHHHHHHHHHcCC--EE--Ee------ecccCcEEEEeCCC---CCccHHHHHHHHCCCeEe
Confidence 6778888 32222 267888999998862 22 11 12345666665542 123567899999999999
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
.++
T Consensus 70 ~~~ 72 (78)
T PF00533_consen 70 SPD 72 (78)
T ss_dssp ETH
T ss_pred cHH
Confidence 764
No 390
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=26.27 E-value=2.6e+02 Score=23.69 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh----cCCCEEEcCCCCcceeeec
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA----FQLPVLGTAAGGTTEIVVN 213 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama----~G~Pvi~~~~~~~~e~v~~ 213 (284)
+...+++...+.|+..++.+. .++...+..||+++... ++| +++-|.. -.+|||..+......
T Consensus 76 ~~~~~~~~l~k~giesklv~R---~~lsq~i~waD~VisvG---GDG---TfL~Aasrv~~~~~PViGvNtDP~~S---- 142 (395)
T KOG4180|consen 76 AIKFCQEELSKAGIESKLVSR---NDLSQPIRWADMVISVG---GDG---TFLLAASRVIDDSKPVIGVNTDPTGS---- 142 (395)
T ss_pred HHHHHHHHHhhCCcceeeeeh---hhccCcCchhhEEEEec---Ccc---ceeehhhhhhccCCceeeecCCCCcC----
Confidence 556666666677776555433 46666699999999544 222 3332322 468999887654432
Q ss_pred CCceeeecCCCCChHHHHHHHHHHhh
Q 023290 214 GTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 214 ~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.|.++-+... ++..++++.++..
T Consensus 143 --eg~lcL~~~~-~~n~~~al~k~~s 165 (395)
T KOG4180|consen 143 --EGHLCLPDKY-PSNPAGALCKLTS 165 (395)
T ss_pred --cceEeccccC-CCCcHHHHHHHHh
Confidence 2333333332 3556666666654
No 391
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=26.17 E-value=4.9e+02 Score=23.50 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-cCH---H-HHHhhccE
Q 023290 99 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTV---A-PYLAAIDV 173 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-~~~---~-~~~~~ad~ 173 (284)
...+-++...+.+.+. .+-++.|+|+..-+.-....-+....+++|..-.+.+.... +.+ . .....+|+
T Consensus 19 l~~~~~a~~~i~~ai~------~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~l 92 (491)
T COG0608 19 LKDMEKAAARIAEAIE------KGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADL 92 (491)
T ss_pred HhhHHHHHHHHHHHHH------cCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCE
Confidence 3444445555544443 45678899985544444556677788888876566666554 333 2 34567788
Q ss_pred EEEcCCCCcCccchhHHHH----HhcCCCEEEcCCCCcce
Q 023290 174 LVQNSQAWGECFGRITIEA----MAFQLPVLGTAAGGTTE 209 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Ea----ma~G~Pvi~~~~~~~~e 209 (284)
++..-. |....|. -..|+.||++|.-...+
T Consensus 93 iItvD~------G~~~~~~i~~~~~~g~~vIVtDHH~~~~ 126 (491)
T COG0608 93 IITVDN------GSGSLEEIARAKELGIDVIVTDHHPPGE 126 (491)
T ss_pred EEEECC------CcccHHHHHHHHhCCCcEEEECCCCCCC
Confidence 886543 3333433 34599999999874333
No 392
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=26.15 E-value=1e+02 Score=21.59 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=22.3
Q ss_pred HHHhhccEEEEcCC-CCcCccchh--HHHHHhcCCCEEE
Q 023290 166 PYLAAIDVLVQNSQ-AWGECFGRI--TIEAMAFQLPVLG 201 (284)
Q Consensus 166 ~~~~~ad~~~~ps~-~~~e~~~~~--~~Eama~G~Pvi~ 201 (284)
.+|..||.+|.+.. +|.++.|+. +-.|...|+||..
T Consensus 75 ~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~ 113 (116)
T PF09152_consen 75 PFLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFL 113 (116)
T ss_dssp HHHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEEE
Confidence 57899999987743 355666653 5678889999864
No 393
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.09 E-value=4.3e+02 Score=23.37 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=22.9
Q ss_pred hccEEEEcCCCCcCccchhHHHHH-----hcCCCEEEcCCCC
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAM-----AFQLPVLGTAAGG 206 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eam-----a~G~Pvi~~~~~~ 206 (284)
.+|++|...-+....||...-+-. -+|+|+|+.-...
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 578888644434666775544322 2699999885443
No 394
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=26.07 E-value=1.2e+02 Score=18.86 Aligned_cols=51 Identities=10% Similarity=0.054 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
..+...+++.+.+..|++++....+++|-..+.- .....+|+.++..+.+.
T Consensus 20 ~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~--------------~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 20 KESVSTLKKLVSEHLNVPEEQQRLLFKGKALADD--------------KRLSDYSIGPNAKLNLV 70 (74)
T ss_pred CCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC--------------CCHHHCCCCCCCEEEEE
Confidence 3445556777888888888888888888654321 12356777666655443
No 395
>PRK06932 glycerate dehydrogenase; Provisional
Probab=26.01 E-value=4e+02 Score=22.40 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=50.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc---------ccCHHHHHhhccEEEEcCCCCcCc---cchhH
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---------TLTVAPYLAAIDVLVQNSQAWGEC---FGRIT 189 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~---------~~~~~~~~~~ad~~~~ps~~~~e~---~~~~~ 189 (284)
+-++-|+|-|. .-..+.+.++.+|. +|..... ..++.++++.||++++......++ ++-..
T Consensus 147 gktvgIiG~G~-----IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~ 219 (314)
T PRK06932 147 GSTLGVFGKGC-----LGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAET 219 (314)
T ss_pred CCEEEEECCCH-----HHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHH
Confidence 34677888875 55777777777765 4555432 136789999999987532211344 44567
Q ss_pred HHHHhcCCCEEEcCCCC
Q 023290 190 IEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 190 ~Eama~G~Pvi~~~~~~ 206 (284)
++.|--|.-+|-+..|+
T Consensus 220 l~~mk~ga~lIN~aRG~ 236 (314)
T PRK06932 220 LALMKPTAFLINTGRGP 236 (314)
T ss_pred HHhCCCCeEEEECCCcc
Confidence 77787777777665554
No 396
>PLN02765 pyruvate kinase
Probab=25.76 E-value=5.2e+02 Score=23.69 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCcEEEecc------ccCHHHHHhhccEEEEcCCC-----CcCccc----hhHHHHHhcCC
Q 023290 133 NAQTKFESELRNYVMQKKIQDRVHFVNK------TLTVAPYLAAIDVLVQNSQA-----WGECFG----RITIEAMAFQL 197 (284)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~v~~~~~------~~~~~~~~~~ad~~~~ps~~-----~~e~~~----~~~~Eama~G~ 197 (284)
-...+....+++.+.+.+.. ++.++.. ++++.+++..+|.+...--. ..|-.| ..+-.|-..|+
T Consensus 229 Vr~a~DI~~~r~~l~~~g~~-~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gK 307 (526)
T PLN02765 229 TRHAEDVREAREFLSSLGLS-QTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGK 307 (526)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCC
Confidence 33344677778888776532 2333322 37899999999987754210 011112 12346778999
Q ss_pred CEEEcCC---------C------CcceeeecCCceeeec----CCCCChHHHHHHHHHHhhCHH
Q 023290 198 PVLGTAA---------G------GTTEIVVNGTTGLLHP----VGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 198 Pvi~~~~---------~------~~~e~v~~~~~g~~~~----~~d~~~~~~~~~i~~l~~~~~ 242 (284)
|||+|.. + .....+-+|.+|++.. .+. .|-+..+.+.+++...+
T Consensus 308 PVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~-yPveaV~~m~~I~~~aE 370 (526)
T PLN02765 308 PAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL-YPVETISTVGRICAEAE 370 (526)
T ss_pred CeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC-CHHHHHHHHHHHHHHHH
Confidence 9998631 1 1222445677888776 333 27777777777766444
No 397
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=25.56 E-value=3e+02 Score=20.87 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=36.8
Q ss_pred eEEEEeccccc-cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC--------ChHHHHHHHHHHHHcCCCCcE
Q 023290 85 LLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA--------QTKFESELRNYVMQKKIQDRV 155 (284)
Q Consensus 85 ~~i~~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~--------~~~~~~~l~~~~~~~~~~~~v 155 (284)
..-+++|++.| ++|+-.+++-+... -|-.++++|+.... ..+-...+++..++.++..++
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~-----------vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~r~ 72 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSK-----------VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDLRV 72 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHh-----------CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCceE
Confidence 34568999997 78987777643221 45566777873221 112334555566666654445
Q ss_pred EEec
Q 023290 156 HFVN 159 (284)
Q Consensus 156 ~~~~ 159 (284)
.+..
T Consensus 73 ~~~~ 76 (172)
T COG1056 73 YLRP 76 (172)
T ss_pred EEEe
Confidence 5544
No 398
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=2.4e+02 Score=23.87 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-c---cCHHHHHhh---ccEEEEcCCCCcCccchhHHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T---LTVAPYLAA---IDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~---~~~~~~~~~---ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
|+-++++++-|..-...........+..-++. |+.++.. + ..+..++.+ -|.+|.|+.- .--.|....|.+
T Consensus 131 pdk~VVffaiGFETT~P~TA~~l~~~~~e~i~-Nf~~ls~H~~~pPa~e~Ll~~~~~idafi~PGHV-StIiG~kpY~~l 208 (364)
T COG0409 131 PDKKVVFFAIGFETTTPTTACMLLSAKGEGIE-NFFVLSNHRLLPPAVEALLESEVLIDAFLAPGHV-STIIGTKPYEFL 208 (364)
T ss_pred CCCceEEEeCccccCCCchHHHHHhccccccc-eEEEEEeceecCHHHHHHHhccccccceecccee-EEEecccccHHH
Confidence 77778887765422211222222222333443 5555543 2 455566655 4667777752 333567788888
Q ss_pred hc--CCCEEEcCC
Q 023290 194 AF--QLPVLGTAA 204 (284)
Q Consensus 194 a~--G~Pvi~~~~ 204 (284)
+- ++|+|++..
T Consensus 209 a~ky~~P~VVaGF 221 (364)
T COG0409 209 AEKYKFPIVVAGF 221 (364)
T ss_pred HHhcCCCeEEecC
Confidence 87 799998853
No 399
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=25.17 E-value=1.4e+02 Score=18.48 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhcccCCCeEEEecCCcc
Q 023290 26 VTAEYWKNRTRERLRIKMPDTYVVHLGNSK 55 (284)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~ 55 (284)
.+...++..+.+..|++.+...++++|-..
T Consensus 20 ~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L 49 (71)
T cd01796 20 LELENFKALCEAESGIPASQQQLIYNGREL 49 (71)
T ss_pred CCHHHHHHHHHHHhCCCHHHeEEEECCeEc
Confidence 445566777888888888888888887644
No 400
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=25.10 E-value=3e+02 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEEcCCCCcceeeecCCceeeec
Q 023290 189 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP 221 (284)
Q Consensus 189 ~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~ 221 (284)
.+=|.+.|+|++.-.-.+..-.--+...+++.-
T Consensus 183 TIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~V 215 (2196)
T KOG0368|consen 183 TIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSV 215 (2196)
T ss_pred HHHHHhcCCCcccccCCcceeeeecccCCeEec
Confidence 345999999999765444433222334455444
No 401
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=24.86 E-value=1.4e+02 Score=18.93 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
..+...+++.+.+..|++++....++.|--.+.- .....+|+.++..+.++
T Consensus 22 ~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~--------------~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 22 LTKVEELREKIQELFNVEPECQRLFYRGKQMEDG--------------HTLFDYNVGLNDIIQLL 72 (78)
T ss_pred cCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCC--------------CCHHHcCCCCCCEEEEE
Confidence 3455567777888888988888888887654321 12256788777766554
No 402
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=24.85 E-value=4.6e+02 Score=22.77 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccE
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 173 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~ 173 (284)
..|.+..++++......-... ...++-.+.|+|..... ....+++++.++.|+.-+..+.+.. +++.. +..|.+
T Consensus 135 ~~G~~~a~~al~~~l~~~~~~-~~~~~~~VNiig~~~~~--~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~ 210 (406)
T cd01967 135 SLGHHIANDAILDHLVGTKEP-EEKTPYDVNIIGEYNIG--GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKL 210 (406)
T ss_pred cHHHHHHHHHHHHHhcCCCCc-CCCCCCeEEEEeccccc--hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCE
Confidence 456777777765533210000 01134567888874321 2568899999999998776666432 55554 566666
Q ss_pred EEEcCCCCcCccchhHHHHHh--cCCCEEE
Q 023290 174 LVQNSQAWGECFGRITIEAMA--FQLPVLG 201 (284)
Q Consensus 174 ~~~ps~~~~e~~~~~~~Eama--~G~Pvi~ 201 (284)
-+..+. . ++..+.+.|. +|+|.+.
T Consensus 211 niv~~~--~--~~~~~a~~L~~r~GiP~~~ 236 (406)
T cd01967 211 NLVHCS--R--SMNYLAREMEERYGIPYME 236 (406)
T ss_pred EEEECh--H--HHHHHHHHHHHhhCCCEEE
Confidence 554432 1 2334444443 7999975
No 403
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=24.84 E-value=3.3e+02 Score=21.12 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=54.2
Q ss_pred ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCC
Q 023290 41 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 120 (284)
Q Consensus 41 ~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~ 120 (284)
+..+++..+|++.++-.-.....+... |.+..+..=-..+.+.+ .-....++|...-++.+..+.+.. +
T Consensus 30 l~ld~vi~~ps~~~p~k~~~~~a~~~~---R~~Ml~la~~~~~~~~v--~~~e~~r~g~sYT~dTl~~~~~~~------~ 98 (197)
T COG1057 30 LGLDKVIFLPSPVPPHKKKKELASAEH---RLAMLELAIEDNPRFEV--SDREIKRGGPSYTIDTLEHLRQEY------G 98 (197)
T ss_pred cCCCeEEEecCCCCCCCCCccCCCHHH---HHHHHHHHHhcCCCcce--eHHHHHcCCCcchHHHHHHHHHHh------C
Confidence 555678889998877443211111111 22222211111122222 233335677777777777776433 3
Q ss_pred CCeEE-EEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l-~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++..| .|+|.+. ...+. .-.+..+++..+.+++++-.
T Consensus 99 p~~~~~fIiGaD~------l~~l~----------------~W~~~~ell~~~~~vv~~Rp 136 (197)
T COG1057 99 PDVELYFIIGADN------LASLP----------------KWYDWDELLKLVTFVVAPRP 136 (197)
T ss_pred CCCcEEEEEehHH------hhhhh----------------hhhhHHHHHHhCCEEEEecC
Confidence 77766 4566531 12221 11366778888888887754
No 404
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.83 E-value=2.8e+02 Score=20.29 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=44.3
Q ss_pred CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccc--cHHHHHHHHHHHHHHHHhhccCC
Q 023290 43 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEV 120 (284)
Q Consensus 43 ~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k--~~~~~~~a~~~l~~~~~~~~~~~ 120 (284)
...+.++..|+.=....... ..+.+...-...+.+++++|.-+-.. ..+.+.+.+..+.+.+++..
T Consensus 20 ~~~~~v~N~Gi~G~~~~~~~---------~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~--- 87 (171)
T cd04502 20 LAPLPVVNRGFGGSTLADCL---------HYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKL--- 87 (171)
T ss_pred CCCCceeecCcccchHHHHH---------HHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHC---
Confidence 34567888887665433211 11111111112446777888766433 46777777888777776543
Q ss_pred CCeEEEEEec
Q 023290 121 PSVHAVIIGS 130 (284)
Q Consensus 121 ~~~~l~i~G~ 130 (284)
++.++++++.
T Consensus 88 ~~~~iil~~~ 97 (171)
T cd04502 88 PDTPIAIISI 97 (171)
T ss_pred CCCcEEEEEe
Confidence 7788888774
No 405
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.21 E-value=4.3e+02 Score=22.17 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=37.6
Q ss_pred HhhccEEEEcCCCCcCccchhHHHH----HhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEA----MAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Ea----ma~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
-..+|+++.-. ++| +++.| ...++|++.-+. |..|++.+.. ++++.++|.++++.
T Consensus 66 ~~~~Dlvi~iG---GDG---TlL~aar~~~~~~iPilGIN~---------G~lGFLt~~~---~~~~~~~l~~l~~g 124 (305)
T PRK02649 66 DSSMKFAIVLG---GDG---TVLSAARQLAPCGIPLLTINT---------GHLGFLTEAY---LNQLDEAIDQVLAG 124 (305)
T ss_pred ccCcCEEEEEe---CcH---HHHHHHHHhcCCCCcEEEEeC---------CCCcccccCC---HHHHHHHHHHHHcC
Confidence 34689988654 343 55544 345889998765 4457777654 78899999988764
No 406
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=24.19 E-value=3.2e+02 Score=21.10 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=26.7
Q ss_pred CCeEEEEeccccccc--cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 023290 83 EDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 131 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k--~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~ 131 (284)
.+.+++++|.-+-.. ..+.+.+.+..+...++.. .|+.++++++-.
T Consensus 90 pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~---~P~~~Iil~~~~ 137 (214)
T cd01820 90 PKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREK---LPNAKILLLGLL 137 (214)
T ss_pred CCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHH---CCCCeEEEEecc
Confidence 345566677655433 3666666666666555542 366777777643
No 407
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.11 E-value=4.3e+02 Score=22.14 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=47.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----------cCHHHHHhhccEEEEcCCCCcCc---cchh
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----------LTVAPYLAAIDVLVQNSQAWGEC---FGRI 188 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~ad~~~~ps~~~~e~---~~~~ 188 (284)
+-.+-|+|-|. .-..+.+.++.+|. +|...... .++.++++.||++++......++ ++-.
T Consensus 145 gktvGIiG~G~-----IG~~vA~~~~~fgm--~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 145 GKKWGIIGLGT-----IGKRVAKIAQAFGA--KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCEEEEECCCH-----HHHHHHHHHhhcCC--EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHH
Confidence 44567888775 55777777777665 56654421 36789999999987532211343 3445
Q ss_pred HHHHHhcCCCEEEcCCC
Q 023290 189 TIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 189 ~~Eama~G~Pvi~~~~~ 205 (284)
.++.|--|.-+|-+..|
T Consensus 218 ~~~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 218 ELKLLKDGAILINVGRG 234 (311)
T ss_pred HHHhCCCCeEEEECCCc
Confidence 66666666655555444
No 408
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=23.91 E-value=3.7e+02 Score=21.31 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEec-cccCHHHHHhhccEEEEcCCCCcCccc-----------h
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFG-----------R 187 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~-~~~~~~~~~~~ad~~~~ps~~~~e~~~-----------~ 187 (284)
+.+.|+=..+.......|.+..++...++|..- .+.... +.+++...+..+|++.... .++|- -
T Consensus 33 ~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgG---GNTF~LL~~lke~gld~ 109 (224)
T COG3340 33 KTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGG---GNTFNLLQELKETGLDD 109 (224)
T ss_pred ceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECC---chHHHHHHHHHHhCcHH
Confidence 345554433444444458888888888888631 222222 2367777888899988754 33332 2
Q ss_pred hHHHHHhcCCCEEEcCCCC
Q 023290 188 ITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~~ 206 (284)
.+.|+...|+|.|....|+
T Consensus 110 iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 110 IIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHHcCCceEEeccCc
Confidence 3569999999999876554
No 409
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=23.85 E-value=1.3e+02 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.1
Q ss_pred hHHHHHhcCCCEEEcCCCC
Q 023290 188 ITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~~ 206 (284)
.++|++..|+|||..|...
T Consensus 3 ~ai~al~~G~~Viv~D~~~ 21 (194)
T PF00926_consen 3 EAIEALKAGKPVIVVDDED 21 (194)
T ss_dssp HHHHHHHTTS-EEEECSST
T ss_pred HHHHHHHCCCeEEEEeCCC
Confidence 4689999999999998644
No 410
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=23.84 E-value=1.9e+02 Score=18.06 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
..+...++..+....|+++++..++++|--.+. +.....|++.++..+.+.+
T Consensus 17 ~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d--------------~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 17 SDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKD--------------SNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred CCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCC--------------CCcHHHcCCCCCCEEEEEE
Confidence 345566677788888888888888888742211 1123567777666555443
No 411
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.79 E-value=4.1e+02 Score=21.75 Aligned_cols=92 Identities=18% Similarity=0.045 Sum_probs=46.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---cCHHHHHhhccEEEEcCCCCcCccchhHH----HHHhcC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITI----EAMAFQ 196 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~---~~~~~~~~~ad~~~~ps~~~~e~~~~~~~----Eama~G 196 (284)
++.++|.|... .....+.......|. ++.+.... ......+..-|++|.-|.+ |..--++ .|-..|
T Consensus 137 ~I~i~G~G~S~--~~A~~l~~~l~~~g~--~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~s---g~t~~~~~~~~~a~~~g 209 (285)
T PRK15482 137 FIQITGLGGSA--LVGRDLSFKLMKIGY--RVACEADTHVQATVSQALKKGDVQIAISYS---GSKKEIVLCAEAARKQG 209 (285)
T ss_pred eeEEEEeChhH--HHHHHHHHHHHhCCC--eeEEeccHhHHHHHHhcCCCCCEEEEEeCC---CCCHHHHHHHHHHHHCC
Confidence 46788877532 134444444555554 45443321 1122335567999988862 2222233 445669
Q ss_pred CCEEEcCCCCcceeeecCCceeeecC
Q 023290 197 LPVLGTAAGGTTEIVVNGTTGLLHPV 222 (284)
Q Consensus 197 ~Pvi~~~~~~~~e~v~~~~~g~~~~~ 222 (284)
.|+|+-.......+.+....-+.++.
T Consensus 210 ~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 210 ATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred CEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 99996543333333333333344443
No 412
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=23.78 E-value=1.7e+02 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=15.3
Q ss_pred hHHHHHhcCCCEEEcCCC
Q 023290 188 ITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~ 205 (284)
.+++++..|+|||..|..
T Consensus 5 ~ai~al~~G~~Viv~Dde 22 (219)
T PRK05773 5 EARKALESGIPVLIYDFD 22 (219)
T ss_pred HHHHHHHCCCeEEEEECC
Confidence 468999999999999753
No 413
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.74 E-value=5.2e+02 Score=22.92 Aligned_cols=31 Identities=3% Similarity=-0.023 Sum_probs=19.5
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccC
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 43 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~ 43 (284)
..+..+..-++.+... ....+.+.++||+|.
T Consensus 230 ~~~~~A~lniv~~~~~-~~~a~~Lee~~giP~ 260 (432)
T TIGR01285 230 RQIGQSCCTLAIGESM-RRAASLLADRCGVPY 260 (432)
T ss_pred HhhccCcEEEEEChhH-HHHHHHHHHHHCCCe
Confidence 3445566556665543 456666888888874
No 414
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=23.73 E-value=4.1e+02 Score=21.72 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh-ccEEEEcCCCCcC--------ccchhHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-IDVLVQNSQAWGE--------CFGRITIE 191 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~-ad~~~~ps~~~~e--------~~~~~~~E 191 (284)
.++++++.-+.+.. .-..+.+...+.|+ .|.++.. ..+..+|.. +|.+++....-.. |.-...+=
T Consensus 132 ~~~~V~v~es~P~~---eG~~~a~~L~~~gi--~v~~i~d-~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~ 205 (282)
T PF01008_consen 132 KKFRVIVLESRPYN---EGRLMAKELAEAGI--PVTLIPD-SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALA 205 (282)
T ss_dssp EEEEEEEE--TTTT---HHHTHHHHHHHTT---EEEEE-G-GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHH
T ss_pred CeEEEEEccCCcch---hhhhHHHHhhhcce--eEEEEec-hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHH
Confidence 56777776654422 11233333444565 4665554 468889999 9999876442111 11123345
Q ss_pred HHhcCCCEEEc
Q 023290 192 AMAFQLPVLGT 202 (284)
Q Consensus 192 ama~G~Pvi~~ 202 (284)
|-.+++|+++-
T Consensus 206 Ak~~~vPv~v~ 216 (282)
T PF01008_consen 206 AKEFNVPVYVL 216 (282)
T ss_dssp HHHTT-EEEEE
T ss_pred HHhhCCCEEEE
Confidence 66679999975
No 415
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=23.60 E-value=3.4e+02 Score=24.58 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec-----c--c----cCHHHH
Q 023290 99 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-----K--T----LTVAPY 167 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-----~--~----~~~~~~ 167 (284)
...+.+++..+++ -+-.|+++|.+.--.. ..+++++++..++++---.=.| . . +.-...
T Consensus 204 ~s~i~~av~llk~---------AKrPLlvvGkgAa~~~-ae~~l~~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~A 273 (571)
T KOG1185|consen 204 PSQIQKAVQLLKS---------AKRPLLVVGKGAAYAP-AEDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLA 273 (571)
T ss_pred HHHHHHHHHHHHh---------cCCcEEEEecccccCc-cHHHHHHHHHhcCCCcccCcccccCCCCCCchhhhHHHHHH
Confidence 4566666655543 2334899998753332 5688999999987641110011 0 0 122345
Q ss_pred HhhccEEEEcCC
Q 023290 168 LAAIDVLVQNSQ 179 (284)
Q Consensus 168 ~~~ad~~~~ps~ 179 (284)
++.||++++...
T Consensus 274 Lk~ADvvll~Ga 285 (571)
T KOG1185|consen 274 LKKADVVLLAGA 285 (571)
T ss_pred HhhCCEEEEecc
Confidence 899999887543
No 416
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=23.43 E-value=2.2e+02 Score=25.03 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=34.6
Q ss_pred eeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 210 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 210 ~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
++.+++.|.+-. ...+++.+.++-.+......-..++.......|+|+.+..++.
T Consensus 319 l~~~~k~~~LSa-----~aAvads~~dL~~H~~a~~~a~~aAlr~lL~~FsPq~L~~Rf~ 373 (430)
T COG3456 319 LFAEGKSGHLSA-----EAAVADSFRDLRAHELAAQAAVQAALRALLDRFSPQALLRRFD 373 (430)
T ss_pred HHhcCCccccCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHhcc
Confidence 344444444433 5778888888876554444444455555667899988877654
No 417
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=23.29 E-value=1.1e+02 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
+...+.+..-............+.++++.+.+-+|... .|..+.+..||+++..-+
T Consensus 27 ~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~t---td~~eAl~gADfVi~~ir 82 (183)
T PF02056_consen 27 SGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEAT---TDRREALEGADFVINQIR 82 (183)
T ss_dssp TEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEE---SSHHHHHTTESEEEE---
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEe---CCHHHHhCCCCEEEEEee
Confidence 45577777765422222344455666677664444322 488899999999998766
No 418
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=23.17 E-value=3.1e+02 Score=20.12 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=29.7
Q ss_pred CeEEEEeccccccc----cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 023290 84 DLLFAIINSVSRGK----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 130 (284)
Q Consensus 84 ~~~i~~~g~~~~~k----~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~ 130 (284)
..+++.+|.-+... ....+.+.+..+.+.+++. .|+.+++++..
T Consensus 57 d~vii~~G~ND~~~~~~~~~~~~~~~~~~li~~i~~~---~p~~~i~~~~~ 104 (169)
T cd01831 57 DLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRKR---YPDAPIVLMLG 104 (169)
T ss_pred CEEEEECCcCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCeEEEEec
Confidence 46777888776543 3577777777777777663 37877766653
No 419
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=23.11 E-value=4.2e+02 Score=21.64 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=71.5
Q ss_pred CCeEEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+.+++ ..+-.++ ..|.+.+++.+.. ..+.=+|+-+-+. +....+...+++.|+. .|.+..+
T Consensus 87 ~~piv-lm~Y~N~i~~~G~e~F~~~~~~------------aGvdGlIipDLP~---ee~~~~~~~~~~~gl~-~I~lv~p 149 (259)
T PF00290_consen 87 DIPIV-LMTYYNPIFQYGIERFFKEAKE------------AGVDGLIIPDLPP---EESEELREAAKKHGLD-LIPLVAP 149 (259)
T ss_dssp SSEEE-EEE-HHHHHHH-HHHHHHHHHH------------HTEEEEEETTSBG---GGHHHHHHHHHHTT-E-EEEEEET
T ss_pred CCCEE-EEeeccHHhccchHHHHHHHHH------------cCCCEEEEcCCCh---HHHHHHHHHHHHcCCe-EEEEECC
Confidence 34443 3344443 5677777766655 3466677776554 3567888889999884 6777766
Q ss_pred c---cCHHHHHhhccEEEEc-CCCCcCccc------hhHHHHH-----hcCCCEEEcC-CC---CcceeeecCCceeeec
Q 023290 161 T---LTVAPYLAAIDVLVQN-SQAWGECFG------RITIEAM-----AFQLPVLGTA-AG---GTTEIVVNGTTGLLHP 221 (284)
Q Consensus 161 ~---~~~~~~~~~ad~~~~p-s~~~~e~~~------~~~~Eam-----a~G~Pvi~~~-~~---~~~e~v~~~~~g~~~~ 221 (284)
. +.+..+...++-||+. |. ....| ..+-+.+ .+.+|+++.= +. ....+. .+.+|+++-
T Consensus 150 ~t~~~Ri~~i~~~a~gFiY~vs~--~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 150 TTPEERIKKIAKQASGFIYLVSR--MGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp TS-HHHHHHHHHH-SSEEEEESS--SSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred CCCHHHHHHHHHhCCcEEEeecc--CCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 3 5677777777766653 44 22222 2222222 2379998752 11 122333 677888875
Q ss_pred CCCCChHHHHHHHHH
Q 023290 222 VGKEGITPLAKNIVK 236 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~ 236 (284)
..+.+.|.+
T Consensus 227 ------Sa~v~~i~~ 235 (259)
T PF00290_consen 227 ------SAFVKIIEE 235 (259)
T ss_dssp ------HHHHHHHHH
T ss_pred ------HHHHHHHHH
Confidence 566776665
No 420
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=23.09 E-value=2.5e+02 Score=19.54 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 228 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 228 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
.++.++=..+++|+.....+.......-...+.+....+++.+.|.
T Consensus 67 a~If~ah~~~L~D~~l~~~v~~~I~~~~~Ae~Av~~~~~~~~~~f~ 112 (123)
T PF05524_consen 67 AAIFEAHLMMLEDPELIDEVEELIREGKNAEYAVQEVIEEYIEQFE 112 (123)
T ss_dssp THHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3666777777888877776655444332233445555555555554
No 421
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.01 E-value=5e+02 Score=22.46 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=66.4
Q ss_pred HHHHHHhCCCCCCeEEEEeccc--cccccHHHHHHHHHHHHHHHHh-hccCCCCeEEEEEecCCCCChHHHHHHHHHHHH
Q 023290 72 EHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKE-KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 148 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~--~~~k~~~~~~~a~~~l~~~~~~-~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 148 (284)
..++++++. +++.+....+ +...|.+..++++.+ .+.+ .. ....-.+.++|..+... ....+++++.+.
T Consensus 98 ~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~---~~~~~~~-~~~~~~VNiiG~~~~~~-~d~~el~~lL~~ 169 (398)
T PF00148_consen 98 RELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAE---QLVKPPE-EKKPRSVNIIGGSPLGP-GDLEELKRLLEE 169 (398)
T ss_dssp HHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHH---HHTTGTT-TTSSSEEEEEEESTBTH-HHHHHHHHHHHH
T ss_pred HHhhcccCC---cEEEEECCCccCCccchHHHHHHHHHh---hcccccc-cCCCCceEEecCcCCCc-ccHHHHHHHHHH
Confidence 555666664 4555555556 224555555554443 3411 11 12334778888754331 367889999999
Q ss_pred cCCCCcEEEeccccCHHHH--HhhccEEEEcCCCCcCccchhHHHHHhc--CCCEEEc
Q 023290 149 KKIQDRVHFVNKTLTVAPY--LAAIDVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 202 (284)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~--~~~ad~~~~ps~~~~e~~~~~~~Eama~--G~Pvi~~ 202 (284)
.|+.-+..+.+.. .+.++ +..|++.+..+. + .+..+.+.|.- |+|.+..
T Consensus 170 ~Gi~v~~~~~~~~-t~~e~~~~~~A~lniv~~~---~-~~~~~a~~L~e~~giP~~~~ 222 (398)
T PF00148_consen 170 LGIEVNAVFPGGT-TLEEIRKAPEAALNIVLCP---E-GGPYAAEWLEERFGIPYLYF 222 (398)
T ss_dssp TTEEEEEEEETTB-CHHHHHHGGGSSEEEESSC---C-HHHHHHHHHHHHHT-EEEEE
T ss_pred CCCceEEEeCCCC-CHHHHHhCCcCcEEEEecc---c-hhhHHHHHHHHHhCCCeeec
Confidence 9986666665543 44443 567777776664 2 12236666654 9999984
No 422
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=22.97 E-value=4.1e+02 Score=21.43 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=7.5
Q ss_pred HHHhhccEEEEc
Q 023290 166 PYLAAIDVLVQN 177 (284)
Q Consensus 166 ~~~~~ad~~~~p 177 (284)
.+++.||+++++
T Consensus 24 ~ll~~advviYA 35 (254)
T COG2875 24 RLLEKADVVIYA 35 (254)
T ss_pred HHHhhCCEEEEC
Confidence 456666666654
No 423
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.95 E-value=2.9e+02 Score=19.66 Aligned_cols=38 Identities=5% Similarity=0.122 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEecc----c--cCHHHHHhhccEEE
Q 023290 138 FESELRNYVMQKKIQDRVHFVNK----T--LTVAPYLAAIDVLV 175 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~----~--~~~~~~~~~ad~~~ 175 (284)
..+.++.+.+.+++..-+..-+. . +.+.+....||+.|
T Consensus 12 ~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faI 55 (125)
T PF10137_consen 12 AAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAI 55 (125)
T ss_pred HHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEE
Confidence 45556666665555332222221 1 44555556666654
No 424
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=22.87 E-value=3.1e+02 Score=19.99 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=38.9
Q ss_pred EEEEcCCCCcCccchhHHHHHh-cCCCEEEcCCC--Ccce------eeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 173 VLVQNSQAWGECFGRITIEAMA-FQLPVLGTAAG--GTTE------IVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~~~--~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+++.|.- +...+.++-.|++ ..+|+|=.... -.+| ++.+-..|.++--+ +....=++..++
T Consensus 70 IvINpga--~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRhhS~~s~~a~GvI~GlG---~~GY~lAl~~l~ 139 (146)
T COG0757 70 IVINPGA--YTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRHHSYTSPVAKGVICGLG---AQGYLLALRALV 139 (146)
T ss_pred EEEcCcc--chhhHHHHHHHHHhcCCCEEEEEecCchhcccccccccccchhceeEecCc---HHHHHHHHHHHH
Confidence 8888887 7788899999965 47999943222 1233 33334456666555 666666666554
No 425
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=22.81 E-value=1e+02 Score=25.18 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=30.5
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
.++.+++..+|+++..+. .....-.+.+++..|+.+++...+.
T Consensus 53 ~~~~ell~~~DvVvi~a~--~~~~~~~~~~al~~Gk~Vvv~s~gA 95 (265)
T PRK13304 53 LSIDELVEDVDLVVECAS--VNAVEEVVPKSLENGKDVIIMSVGA 95 (265)
T ss_pred CCHHHHhcCCCEEEEcCC--hHHHHHHHHHHHHcCCCEEEEchHH
Confidence 466677789999987765 4444445567888999999865543
No 426
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=22.72 E-value=3.8e+02 Score=21.02 Aligned_cols=110 Identities=11% Similarity=0.061 Sum_probs=50.9
Q ss_pred CHHHHHhhccEEEEcCCCCcCccc-------hhHHHHHhcCCCEEEcCCCCcceee--ec-----CCceeeecCCCCChH
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFG-------RITIEAMAFQLPVLGTAAGGTTEIV--VN-----GTTGLLHPVGKEGIT 228 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~-------~~~~Eama~G~Pvi~~~~~~~~e~v--~~-----~~~g~~~~~~d~~~~ 228 (284)
++..-|..+|++++--..-..+-. ..+-.....|+++|.+......++- .+ -..|+.+.-...+.+
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 455668899999864321011111 1122455779999976533333221 11 122433332221256
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 229 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 229 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
...+.+.+...... -.+.+....++.+++.. -.+.+..++.++.
T Consensus 170 ~r~~il~~~a~~~~--~~l~~~v~~~l~~~~~~--~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 170 DRRRILQKKAKERG--IELPEEVIEYLARRFRR--DVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHHHTT----S-HHHHHHHHHHTTS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCcHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 66666666554222 23555666666654432 2444555555443
No 427
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=4.8e+02 Score=22.17 Aligned_cols=43 Identities=5% Similarity=-0.113 Sum_probs=32.9
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcc-cCCCeEEEecCC
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGN 53 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-~~~~i~vi~~g~ 53 (284)
....+.++.|+++.+..++.+...+.+.++- +.-+|....||.
T Consensus 110 ~~k~~~a~kvLvvGDslm~gla~gl~~al~t~~~i~i~~~sn~S 153 (354)
T COG2845 110 AAKSRDADKVLVVGDSLMQGLAEGLDKALATSPGITIVTRSNGS 153 (354)
T ss_pred hhhCCCCCEEEEechHHhhhhHHHHHHHhccCCCcEEEEeecCC
Confidence 3456789999999999999998888888876 334566666663
No 428
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.62 E-value=4.8e+02 Score=22.13 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCCCeEEEEEecCCCC------ChHHHHHHHHHHHHcCCCCcEEEeccc--cCH--HHH
Q 023290 99 QDLFLHSFYESLELIK-EKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNKT--LTV--APY 167 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~-~~~~~~~~~~l~i~G~~~~~------~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~--~~~ 167 (284)
.+.+++++..+.+.++ ..+...| ++-++|=.+.. ..|..+.+...++++.-. .+...|+. +.+ ...
T Consensus 173 ~~~i~~~i~~~~~~l~~~~gi~~P--rIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~-G~~v~GP~paDt~F~~~~ 249 (320)
T TIGR00557 173 PELLVEKLRILHADLRRDFGIARP--RIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAE-GIDLIGPLPADTLFHPAA 249 (320)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC--CEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHC-CCcccCCCCchhhccccc
Confidence 4556666666666665 3343334 55666632221 133444555555544221 34455664 222 233
Q ss_pred HhhccEEEEcCCCCcCccchhHHHH-----HhcCCCEEEc--CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEA-----MAFQLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Ea-----ma~G~Pvi~~--~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
....|+++.-... -.-.|++++-- +..|+|+|-| |.|..-++...+ . . ++.++.++|....
T Consensus 250 ~~~~D~vvaMYHD-QGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg---~-A-----~~~S~~~Ai~~A~ 317 (320)
T TIGR00557 250 LAKYDAVLAMYHD-QGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIAGKG---K-A-----DPGSLIAAIKLAI 317 (320)
T ss_pred ccCCCEEEECccc-ccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC---C-C-----CHHHHHHHHHHHH
Confidence 4678999976651 11223333311 3459999954 455555554222 1 1 2778888886543
No 429
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.54 E-value=4.4e+02 Score=21.65 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=48.8
Q ss_pred eEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---
Q 023290 85 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--- 161 (284)
Q Consensus 85 ~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--- 161 (284)
++++.--+.-...|++.+++.++. ..+.=+++-+-+. +....+...++++|+. .|.+..+.
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~------------~GvdGlivpDLP~---ee~~~~~~~~~~~gi~-~I~lvaPtt~~ 160 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKE------------AGVDGLLVPDLPP---EESDELLKAAEKHGID-PIFLVAPTTPD 160 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHH------------cCCCEEEeCCCCh---HHHHHHHHHHHHcCCc-EEEEeCCCCCH
Confidence 344334444457888887776654 4555567766554 3667888899999985 56666553
Q ss_pred cCHHHHHhhccEEE
Q 023290 162 LTVAPYLAAIDVLV 175 (284)
Q Consensus 162 ~~~~~~~~~ad~~~ 175 (284)
+.+..+...++-++
T Consensus 161 ~rl~~i~~~a~GFi 174 (265)
T COG0159 161 ERLKKIAEAASGFI 174 (265)
T ss_pred HHHHHHHHhCCCcE
Confidence 55777777775544
No 430
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.52 E-value=4.8e+02 Score=22.11 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=80.7
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---cCHH
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVA 165 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~---~~~~ 165 (284)
.+-.-.+.|.+..+++.++. +|+ .+++|+...+.. ..-....+.+..|+ .+.++++. +-+.
T Consensus 127 ~v~~~s~~~t~~dlv~~~k~-----------~p~--~v~~~~~g~Gs~-dhl~~~~~~k~~Gi--~~~~Vpy~g~gea~t 190 (319)
T COG3181 127 VVRADSPYKTLKDLVAYAKA-----------DPG--SVIGGGSGLGSA-DHLAGALFAKAAGI--KITYVPYKGGGEALT 190 (319)
T ss_pred EEeCCCCcccHHHHHHHHHh-----------CCC--eEEecCCCCCcH-HHHHHHHHHHHhCC--ceeEEeecCccHHHH
Confidence 34444678888888877754 265 344444332211 22333456667777 45555543 5566
Q ss_pred HHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCEE--------EcCCCCccee----eecCCceeeecCCCC--ChHHH
Q 023290 166 PYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVL--------GTAAGGTTEI----VVNGTTGLLHPVGKE--GITPL 230 (284)
Q Consensus 166 ~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi--------~~~~~~~~e~----v~~~~~g~~~~~~d~--~~~~~ 230 (284)
.++ .+.|+..... .|.. .-.++--..+-.| .+|.+...|. +-..-.|++.+++-. ..+.+
T Consensus 191 aLlgg~v~a~~~~~---se~~--~~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~ 265 (319)
T COG3181 191 ALLGGHVDAGSTNL---SELL--SQVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKL 265 (319)
T ss_pred HHhcCceeeeecCh---hhhh--hhhccCceEEEEeechhhcCCCCCCCChHhcCCceeeeeeeEEEeCCCCCHHHHHHH
Confidence 677 5667765332 1111 1111111111111 2333333321 112345667766541 14566
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 231 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 231 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
.+++.+++++++.++.+.+.+.. ....+.+.+...+.+-+
T Consensus 266 ~~a~kk~l~s~e~~~~~~~~~~~--~~~~~~eel~a~i~~~~ 305 (319)
T COG3181 266 SAALKKALASPEWQKRLKELGLV--PSYLTGEELKAYIEKEI 305 (319)
T ss_pred HHHHHHHhcCHHHHHHHHhcCCC--CccCCHHHHHHHHHHHH
Confidence 77788888899887776655432 22345555555554444
No 431
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.37 E-value=2.7e+02 Score=19.19 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=39.0
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCH---HHHHhhccEEEEcCCCCcCccc--hhHHHHHhcCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV---APYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~---~~~~~~ad~~~~ps~~~~e~~~--~~~~Eama~G~P 198 (284)
++.++|.|.... ....+.......+. .+.+....+.+ ...+..-|+++..|.+ .++-. ..+-.|-..|.|
T Consensus 2 ~I~i~G~G~S~~--~a~~~~~~l~~~g~--~~~~~~~~~~~~~~~~~~~~~d~vi~iS~s-G~t~~~~~~~~~a~~~g~~ 76 (128)
T cd05014 2 KVVVTGVGKSGH--IARKIAATLSSTGT--PAFFLHPTEALHGDLGMVTPGDVVIAISNS-GETDELLNLLPHLKRRGAP 76 (128)
T ss_pred eEEEEeCcHhHH--HHHHHHHHhhcCCC--ceEEcccchhhccccCcCCCCCEEEEEeCC-CCCHHHHHHHHHHHHCCCe
Confidence 356777764321 23344444444443 34444332111 1334677999988863 22211 123355667999
Q ss_pred EEEcCCC
Q 023290 199 VLGTAAG 205 (284)
Q Consensus 199 vi~~~~~ 205 (284)
||+-...
T Consensus 77 vi~iT~~ 83 (128)
T cd05014 77 IIAITGN 83 (128)
T ss_pred EEEEeCC
Confidence 9965443
No 432
>PLN02928 oxidoreductase family protein
Probab=22.35 E-value=5e+02 Score=22.22 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=48.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc--------------------------ccCHHHHHhhccEEE
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------------------TLTVAPYLAAIDVLV 175 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--------------------------~~~~~~~~~~ad~~~ 175 (284)
+-++-|+|-|. .-..+.+.++.+|. +|..... ..++.++++.||+++
T Consensus 159 gktvGIiG~G~-----IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVv 231 (347)
T PLN02928 159 GKTVFILGYGA-----IGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVV 231 (347)
T ss_pred CCEEEEECCCH-----HHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEE
Confidence 45778889875 55667777777765 4544321 246788999999988
Q ss_pred EcCCCCcCc---cchhHHHHHhcCCCEEEcCCCC
Q 023290 176 QNSQAWGEC---FGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 176 ~ps~~~~e~---~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
+......++ ++-..+..|--|.-+|-+..|+
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~ 265 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIARGG 265 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence 643211333 3445677776676666554443
No 433
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.29 E-value=3.6e+02 Score=21.72 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcCC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTAA 204 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~~ 204 (284)
....+.+.+++.|+ .+...++..+-..++. .++++=.+| .+-.-..+++++| .|+|||.|.-
T Consensus 57 ~~~~L~~~~~~~gi--~f~stpfd~~s~d~l~~~~~~~~KIaS---~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 57 QHKELFEYCKELGI--DFFSTPFDEESVDFLEELGVPAYKIAS---GDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp HHHHHHHHHHHTT---EEEEEE-SHHHHHHHHHHT-SEEEE-G---GGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred HHHHHHHHHHHcCC--EEEECCCCHHHHHHHHHcCCCEEEecc---ccccCHHHHHHHHHhCCcEEEECC
Confidence 45667777777754 1222222222223333 355555666 4555667777665 5899998753
No 434
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.24 E-value=1.6e+02 Score=25.60 Aligned_cols=55 Identities=7% Similarity=0.155 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHhc---ccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc
Q 023290 25 HVTAEYWKNRTRERLR---IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 93 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~---~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~ 93 (284)
..+...+|+++.+..| ++.++..+|+.|--... ......|++.++.+++++++.-
T Consensus 20 ~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~D--------------d~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 20 DETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSD--------------DKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred cChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCC--------------CCcHHHcCCCCCCEEEEEeccC
Confidence 3456667887888777 88889999999864332 1123568888888888887753
No 435
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=22.18 E-value=2e+02 Score=24.56 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecc------ccCHHHHHhhccEEEEcCCC-----CcCccc----hhHHHHHhcCCCEEE
Q 023290 137 KFESELRNYVMQKKIQDRVHFVNK------TLTVAPYLAAIDVLVQNSQA-----WGECFG----RITIEAMAFQLPVLG 201 (284)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~v~~~~~------~~~~~~~~~~ad~~~~ps~~-----~~e~~~----~~~~Eama~G~Pvi~ 201 (284)
+....+++.+.+.+ .++.++.. .+++.+++..||-++..--. ..|-.+ ..+-.+-..|+|||+
T Consensus 202 ~dV~~lr~~l~~~~--~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ 279 (348)
T PF00224_consen 202 EDVKELRKILGEKG--KDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIV 279 (348)
T ss_dssp HHHHHHHHHHTCTT--TTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHhhhcC--cccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeee
Confidence 46677777777665 34444443 37889999999987764100 022222 224477889999998
Q ss_pred cCC----------CC------cceeeecCCceeeec----CCCCChHHHHHHHHHHhh
Q 023290 202 TAA----------GG------TTEIVVNGTTGLLHP----VGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 202 ~~~----------~~------~~e~v~~~~~g~~~~----~~d~~~~~~~~~i~~l~~ 239 (284)
... +. ....+.+|.+|++.. .+.. |.+..+.+.+++.
T Consensus 280 ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~-p~~~v~~~~~i~~ 336 (348)
T PF00224_consen 280 ATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKY-PVEAVKTMARIIR 336 (348)
T ss_dssp ESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSS-HHHHHHHHHHHHH
T ss_pred hhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCC-HHHHHHHHHHHHH
Confidence 521 11 111334566777766 3332 5555555555543
No 436
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=22.12 E-value=2.2e+02 Score=18.14 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=35.4
Q ss_pred cccchhhHHHHHHHHHHHhc--cc-CCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEE
Q 023290 21 MIDSHVTAEYWKNRTRERLR--IK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 89 (284)
Q Consensus 21 i~~s~~~~~~~~~~~~~~~~--~~-~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 89 (284)
+..+..+...+++.+.+..+ ++ ++....|+.|-..+.- .-...||+.++..+.+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~--------------~TL~dygI~~gstlhLv 73 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDD--------------QTLDFYGIQSGSTIHIL 73 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCC--------------CcHHHcCCCCCCEEEEE
Confidence 45566666777887888763 54 6778889888654321 12356777777666543
No 437
>PLN02727 NAD kinase
Probab=22.03 E-value=8e+02 Score=24.48 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHH----hcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAM----AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eam----a~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+...+|++|.-. ++| +++.|. ..++||+.-+.| ..|++.+.. ++++.+.|.++++.
T Consensus 739 el~~~~DLVIvLG---GDG---TlLrAar~~~~~~iPILGINlG---------rLGFLTdi~---~ee~~~~L~~Il~G 799 (986)
T PLN02727 739 DLHERVDFVACLG---GDG---VILHASNLFRGAVPPVVSFNLG---------SLGFLTSHY---FEDFRQDLRQVIHG 799 (986)
T ss_pred hcccCCCEEEEEC---CcH---HHHHHHHHhcCCCCCEEEEeCC---------CccccccCC---HHHHHHHHHHHHcC
Confidence 3445689988544 333 555553 346788876654 457777654 89999999998874
No 438
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=21.97 E-value=4.1e+02 Score=21.15 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCcEEEeccccCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
.+..+.+.++++. .. ..++.+++ ...|+++..+. ....--....++..|++|++-..+.
T Consensus 12 ~e~a~~~a~~~g~----~~---~~d~~eLl~~~vDaVviatp--~~~H~e~a~~aL~aGkhVl~~s~gA 71 (229)
T TIGR03855 12 PKDAKELAERCGA----KI---VSDFDEFLPEDVDIVVEAAS--QEAVKEYAEKILKNGKDLLIMSVGA 71 (229)
T ss_pred HHHHHHHHHHhCC----ce---ECCHHHHhcCCCCEEEECCC--hHHHHHHHHHHHHCCCCEEEECCcc
Confidence 4556667776653 11 24555655 57899887765 4444446778999999999955443
No 439
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.97 E-value=3.6e+02 Score=22.16 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=11.2
Q ss_pred EEEeccc-cCHHHHHhhccEEEEcC
Q 023290 155 VHFVNKT-LTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 155 v~~~~~~-~~~~~~~~~ad~~~~ps 178 (284)
+.+.+.. ++...+=+.+|+++.+-
T Consensus 90 l~ia~~~~EDp~~i~~~aDi~~~~D 114 (275)
T PF12683_consen 90 LLIAGEPHEDPEVISSAADIVVNPD 114 (275)
T ss_dssp EEEESS--S-HHHHHHHSSEEEE--
T ss_pred EEEcCCCcCCHHHHhhccCeEeccc
Confidence 3333433 45555556777777654
No 440
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=21.92 E-value=1.4e+02 Score=24.51 Aligned_cols=68 Identities=7% Similarity=0.122 Sum_probs=45.4
Q ss_pred cEEEeccc---cCHHHHHhh-cc-EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceee----ecCCceeeecCC
Q 023290 154 RVHFVNKT---LTVAPYLAA-ID-VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV----VNGTTGLLHPVG 223 (284)
Q Consensus 154 ~v~~~~~~---~~~~~~~~~-ad-~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v----~~~~~g~~~~~~ 223 (284)
.|..+++. .++..++.. +| ++|-.|. .+..--.+--|...|+|+|+..+|...+-+ +....++++.++
T Consensus 48 ~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~--P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 48 EILLHGPSEREARIGEVFAKYPELICIDYTH--PSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPN 124 (275)
T ss_pred ceeeeccccccccHHHHHhhcCCEEEEECCC--hHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECc
Confidence 45665442 678888877 99 8887776 554444566788899999998887665533 223456666654
No 441
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=21.82 E-value=4.1e+02 Score=21.05 Aligned_cols=94 Identities=10% Similarity=-0.068 Sum_probs=53.2
Q ss_pred eEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccccC
Q 023290 85 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTLT 163 (284)
Q Consensus 85 ~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~~~ 163 (284)
.+++.+|++.+...-..+++.+.+.... .++.+.++.-.. +.+.+ ...-.+.+..
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~--------~g~~v~~idl~~----------------lPl~~~d~~~~p~v~~ 83 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGC--------EGRETRIFDPPG----------------LPLPDAAHADHPKVRE 83 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhh--------cCCEEEEeCccc----------------CCCCCcCcccCHHHHH
Confidence 5677889998877777777777665431 246666664211 00000 0000112246
Q ss_pred HHHHHhhccEEEEcCCCCcCccchh---HHHHHh---------cCCCEEEc
Q 023290 164 VAPYLAAIDVLVQNSQAWGECFGRI---TIEAMA---------FQLPVLGT 202 (284)
Q Consensus 164 ~~~~~~~ad~~~~ps~~~~e~~~~~---~~Eama---------~G~Pvi~~ 202 (284)
+.+.+..||.+|+.+..|..+++.+ .++.+. .|||+-..
T Consensus 84 l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaiv 134 (219)
T TIGR02690 84 LRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVM 134 (219)
T ss_pred HHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEE
Confidence 6777888999887776545566543 334443 46777643
No 442
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=21.77 E-value=1.9e+02 Score=17.26 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.+..+.+.|.... .....+.+++...|-. +...-. .. .+..+|.... +........+...++|+|
T Consensus 4 ~g~~~~~~g~~~~---~~~~~l~~~i~~~Gg~--~~~~~~-~~------~~thvi~~~~---~~~~~~~~~~~~~~~~iV 68 (80)
T smart00292 4 KGKVFVITGKFDK---NERDELKELIEALGGK--VTSSLS-SK------TTTHVIVGSP---EGGKLELLLAIALGIPIV 68 (80)
T ss_pred CCeEEEEeCCCCC---ccHHHHHHHHHHcCCE--EecccC-cc------ceeEEEEcCC---CCccHHHHHHHHcCCCCc
Confidence 5678888883211 2578888888887632 211000 00 4556666553 222222678888999998
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
...
T Consensus 69 ~~~ 71 (80)
T smart00292 69 TED 71 (80)
T ss_pred cHH
Confidence 764
No 443
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=21.56 E-value=3.5e+02 Score=21.47 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=30.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCC-CCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
.....+++|+...-. ...++..+.+++..- ..-+.|.+..+. +-..+|.++.||.
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~~---i~~~aDa~l~~sv 79 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRRPVPVILFPSNPEA---VSPGADAYLFPSV 79 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcCCCCEEEeCCCccc---cCcCCCEEEEEee
Confidence 345567888744221 233444445554431 224556665443 3567999999986
No 444
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=21.56 E-value=4.2e+02 Score=23.84 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
..++..++...-++.++.+.+++++..++++....+.+..-+..++++.-
T Consensus 396 c~slkfaV~Wgn~h~~~Aq~Igk~gs~f~r~~L~m~~vYdYmfhllqeYa 445 (528)
T KOG2458|consen 396 CRSLKFAVDWGNNHDEEAQKIGKEGSEFARKNLKMDYVYDYMFHLLQEYA 445 (528)
T ss_pred hhHHHHHHHhcccChHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 67788888887789999999999999999999999999999888887653
No 445
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=21.51 E-value=5.2e+02 Score=22.11 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHH-hhccCCCCeEEEEEecCCCC------ChHHHHHHHHHHHHcCCCCcEEEeccc--cCH--HHH
Q 023290 99 QDLFLHSFYESLELIK-EKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNKT--LTV--APY 167 (284)
Q Consensus 99 ~~~~~~a~~~l~~~~~-~~~~~~~~~~l~i~G~~~~~------~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~--~~~ 167 (284)
.+.+++++..+.+.++ ..+...| ++-++|=.+.. ..|..+-+...++++.-. .+...|+. +.+ ...
T Consensus 185 ~e~i~~~i~l~~~~l~~~~gi~~P--rIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~-Gi~v~GP~paDt~F~~~~ 261 (336)
T PRK05312 185 PELIVATARITAADLRRRFGIASP--RLAVAGLNPHAGEGGALGREDIDIIAPAIEQLRAE-GIDARGPLPADTMFHAAA 261 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC--CEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHC-CCCccCCCCchhhccccc
Confidence 4555566666666565 3444445 45666632221 123444444444443211 24444653 222 234
Q ss_pred HhhccEEEEcCCCCcCc-cchhHHHH-----HhcCCCEEEc--CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 168 LAAIDVLVQNSQAWGEC-FGRITIEA-----MAFQLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~-~~~~~~Ea-----ma~G~Pvi~~--~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+...|+++.-.. -.| .|++++.- +..|+|+|-| |.|..-++...| . . ++.++.++|...+
T Consensus 262 ~~~~D~vvaMYH--DQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIAGkg---~-A-----~~~S~~~Ai~lA~ 329 (336)
T PRK05312 262 RATYDAAICMYH--DQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIAGKG---I-A-----RPDSLIAALRLAA 329 (336)
T ss_pred ccCCCEEEEccc--ccCChhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC---C-C-----CHHHHHHHHHHHH
Confidence 567999997665 222 23333321 3459999954 455555554222 1 1 2788888887653
No 446
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=21.47 E-value=1.3e+02 Score=22.97 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=53.2
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCC-eEEEEEecCCCCChHHHHHHHHHHHHc--CCC-CcEEEeccccCHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQK--KIQ-DRVHFVNKTLTVA 165 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~-~~l~i~G~~~~~~~~~~~~l~~~~~~~--~~~-~~v~~~~~~~~~~ 165 (284)
...+.+..| ..+++.+|.+ .. -.++|.+..........+.-.+++++. +++ +++.+.+...
T Consensus 69 f~~l~p~~g---A~e~l~~L~~---------~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~K~--- 133 (191)
T PF06941_consen 69 FSNLPPIPG---AVEALKKLRD---------KGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGDKT--- 133 (191)
T ss_dssp TTT--B-TT---HHHHHHHHHT---------STTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESSGG---
T ss_pred hcCCCccHH---HHHHHHHHHH---------cCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecCCC---
Confidence 455666666 4455555543 32 344455543321110112223345543 222 4677665432
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
.-.+|++|--+ +-.+.++...|.|+|..+.+.++... ...-+.. .+++.+.|.
T Consensus 134 --~v~~DvlIDD~-------~~n~~~~~~~g~~~iLfd~p~Nr~~~----~~~Rv~~----W~ei~~~i~ 186 (191)
T PF06941_consen 134 --LVGGDVLIDDR-------PHNLEQFANAGIPVILFDQPYNRDES----NFPRVNN----WEEIEDLIL 186 (191)
T ss_dssp --GC--SEEEESS-------SHHHSS-SSESSEEEEE--GGGTT------TSEEE-S----TTSHHHHHH
T ss_pred --eEeccEEecCC-------hHHHHhccCCCceEEEEcCCCCCCCC----CCccCCC----HHHHHHHHH
Confidence 22579988443 44566677899999999988877654 2334443 445555553
No 447
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.43 E-value=1.9e+02 Score=22.95 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=15.3
Q ss_pred hHHHHHhcCCCEEEcCCC
Q 023290 188 ITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~ 205 (284)
.+++++..|+|||+.|..
T Consensus 19 ~ai~al~~G~~Viv~Dde 36 (218)
T PRK00910 19 NALQALREGRGVLLLDDE 36 (218)
T ss_pred HHHHHHHCCCeEEEEeCC
Confidence 578899999999999754
No 448
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=21.42 E-value=1.2e+02 Score=25.28 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=28.0
Q ss_pred cEEEecc-----ccCHHHHHhhccEEEEcCCCCcCcc-ch----hHHHHHhcCCCEEE
Q 023290 154 RVHFVNK-----TLTVAPYLAAIDVLVQNSQAWGECF-GR----ITIEAMAFQLPVLG 201 (284)
Q Consensus 154 ~v~~~~~-----~~~~~~~~~~ad~~~~ps~~~~e~~-~~----~~~Eama~G~Pvi~ 201 (284)
+|.+.+. .++..+.+..||++++..-+.+-+. |+ -+-||+.. .|+|+
T Consensus 161 ~V~~~g~e~a~a~peal~AI~~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~-a~vV~ 217 (297)
T TIGR01819 161 DVDFRGAEKASIAPKVLEAIRKEDNILIGPSNPITSIGPILSLPGIREALRD-KKVVA 217 (297)
T ss_pred EEEECCCCCCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHc-CCEEE
Confidence 6766643 1577788999998775432112221 11 14488888 88884
No 449
>PRK06487 glycerate dehydrogenase; Provisional
Probab=21.40 E-value=5e+02 Score=21.85 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--------cCHHHHHhhccEEEEcCCCCcCc---cchhHHH
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--------LTVAPYLAAIDVLVQNSQAWGEC---FGRITIE 191 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~ad~~~~ps~~~~e~---~~~~~~E 191 (284)
-++-|+|-|. .-..+.+.++.+|. +|...... .++.++++.||++++......++ ++-..+.
T Consensus 149 ktvgIiG~G~-----IG~~vA~~l~~fgm--~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~ 221 (317)
T PRK06487 149 KTLGLLGHGE-----LGGAVARLAEAFGM--RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred CEEEEECCCH-----HHHHHHHHHhhCCC--EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence 3677888875 55777777777765 55544321 36789999999987532211333 4456777
Q ss_pred HHhcCCCEEEcCCCC
Q 023290 192 AMAFQLPVLGTAAGG 206 (284)
Q Consensus 192 ama~G~Pvi~~~~~~ 206 (284)
.|--|.-+|-+..|+
T Consensus 222 ~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 222 LMKPGALLINTARGG 236 (317)
T ss_pred cCCCCeEEEECCCcc
Confidence 777776666655444
No 450
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=21.39 E-value=4e+02 Score=20.82 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=31.8
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
-|+++.... ..-..++-||..+|+|+|+- |.....+.+ -+.++.+|+ .-.....+..+
T Consensus 144 P~~vii~~~---~~~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i-----~ypIp~N~~-s~~si~~i~~~ 202 (211)
T PF00318_consen 144 PDLVIILDP---NKNKNAIREANKLNIPTIAIVDTNCNPSLI-----DYPIPANDD-SIKSIYLILNL 202 (211)
T ss_dssp BSEEEESST---TTTHHHHHHHHHTTS-EEEEESTTS-GTTS-----SEEEES-SS-SHHHHHHHHHH
T ss_pred CcEEEEecc---cccchhHHHHHhcCceEEEeecCCCCcccc-----ceEeecCCc-cHHHHHHHHHH
Confidence 567666553 22356899999999999964 554444444 345555553 23333444333
No 451
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.26 E-value=2e+02 Score=23.00 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=14.9
Q ss_pred hHHHHHhcCCCEEEcCCC
Q 023290 188 ITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~ 205 (284)
.+++++..|+|||..|..
T Consensus 23 ~ai~al~~Gk~Viv~Dde 40 (230)
T PRK00014 23 RALQHLRIGRPVILMDDF 40 (230)
T ss_pred HHHHHHHCCCeEEEEECC
Confidence 357889999999999854
No 452
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.24 E-value=5.9e+02 Score=22.69 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHHHHHHHHhhcc---CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHH--Hhh
Q 023290 96 GKGQDLFLHSFYESLELIKEKKL---EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY--LAA 170 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~---~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~--~~~ 170 (284)
..|.+..++++......-.+... ...+-.+.++|...... ...+++++.++.|+.-+..+.+.. .+.++ +..
T Consensus 168 ~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~--d~~el~~lL~~~Gl~v~~~~~~~~-s~eei~~~~~ 244 (456)
T TIGR01283 168 NLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAG--EFWHVKPLLEKLGIRVLATITGDS-RYAEVQTAHR 244 (456)
T ss_pred hHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcc--cHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHhccc
Confidence 46777676666543221000000 00134678888643221 346899999999998766666542 34444 455
Q ss_pred ccEEEEcCCCCcCccchhHHHHH--hcCCCEEE
Q 023290 171 IDVLVQNSQAWGECFGRITIEAM--AFQLPVLG 201 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eam--a~G~Pvi~ 201 (284)
|.+-+..+. . .+..+.+.| -+|+|.+.
T Consensus 245 A~lniv~~~--~--~~~~~a~~L~e~~GiP~~~ 273 (456)
T TIGR01283 245 AKLNMVQCS--K--SMINLARKMEEKYGIPYFE 273 (456)
T ss_pred CcEEEEECH--h--HHHHHHHHHHHHcCCCEEe
Confidence 666554332 1 134566777 57999995
No 453
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=21.06 E-value=4e+02 Score=20.64 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
...+++++... ....+..++... .+.+.... -....+..+|+++..+. .+.....+.+....|++|-
T Consensus 32 ~ga~V~VIs~~------~~~~l~~l~~~~----~i~~~~~~-~~~~~l~~adlViaaT~--d~elN~~i~~~a~~~~lvn 98 (202)
T PRK06718 32 YGAHIVVISPE------LTENLVKLVEEG----KIRWKQKE-FEPSDIVDAFLVIAATN--DPRVNEQVKEDLPENALFN 98 (202)
T ss_pred CCCeEEEEcCC------CCHHHHHHHhCC----CEEEEecC-CChhhcCCceEEEEcCC--CHHHHHHHHHHHHhCCcEE
Confidence 44667777642 334555555542 45554332 11345688999888765 3434445555557788888
Q ss_pred EcCCCCcceee
Q 023290 201 GTAAGGTTEIV 211 (284)
Q Consensus 201 ~~~~~~~~e~v 211 (284)
+.|.+...+++
T Consensus 99 ~~d~~~~~~f~ 109 (202)
T PRK06718 99 VITDAESGNVV 109 (202)
T ss_pred ECCCCccCeEE
Confidence 88876655543
No 454
>PF14053 DUF4248: Domain of unknown function (DUF4248)
Probab=21.02 E-value=74 Score=19.90 Aligned_cols=39 Identities=10% Similarity=0.189 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHH
Q 023290 227 ITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMA 265 (284)
Q Consensus 227 ~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (284)
++...+.+.+.+. ++++.+++.+.++..-...|++.++.
T Consensus 21 ~~sA~r~L~rwI~~~~~L~~~L~~~Gy~~~~r~~TP~QV~ 60 (69)
T PF14053_consen 21 PSSAVRKLRRWIRRNPELLEELEATGYHPRQRSFTPRQVR 60 (69)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHcCCCCCCEecCHHHHH
Confidence 7788888888887 99999999888877665666666543
No 455
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=21.00 E-value=7.8e+02 Score=23.97 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh----ccEEEEcCCCCcCccchhHHHH---HhcCCCEEEcCCCC----
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA----IDVLVQNSQAWGECFGRITIEA---MAFQLPVLGTAAGG---- 206 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~----ad~~~~ps~~~~e~~~~~~~Ea---ma~G~Pvi~~~~~~---- 206 (284)
....+.......|. .+.......+....+.. .|++++ .. ...-+..+++. .....|+|......
T Consensus 709 ~~~~l~~~L~~~G~--~v~~~~s~~~al~~l~~~~~~~DlVll-~~--~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~ 783 (828)
T PRK13837 709 TLERYEEKLAALGY--EPVGFSTLAAAIAWISKGPERFDLVLV-DD--RLLDEEQAAAALHAAAPTLPIILGGNSKTMAL 783 (828)
T ss_pred HHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCceEEEE-CC--CCCCHHHHHHHHHhhCCCCCEEEEeCCCchhh
Confidence 44556666666553 34444433344444432 588888 33 33334344433 34467888553322
Q ss_pred cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 207 TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 207 ~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+....| .+++..|.+ .+.+...|..++.
T Consensus 784 ~~~~~~~G-~d~L~KP~~--~~~L~~~l~~~l~ 813 (828)
T PRK13837 784 SPDLLASV-AEILAKPIS--SRTLAYALRTALA 813 (828)
T ss_pred hhhHhhcc-CcEEeCCCC--HHHHHHHHHHHHc
Confidence 22344456 788999988 9999999988765
No 456
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=20.97 E-value=2.3e+02 Score=17.78 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
..+...+++.+.+..|+++++...++.|-
T Consensus 21 ~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk 49 (73)
T cd01791 21 DDTIGDLKKLIAAQTGTRPEKIVLKKWYT 49 (73)
T ss_pred CCcHHHHHHHHHHHhCCChHHEEEEeCCc
Confidence 34455566667777788888888887763
No 457
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.91 E-value=3.9e+02 Score=20.40 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC-CCCCCeEEEEeccccccc----cHHHHHHHHHHHHHHHHhhcc
Q 023290 44 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGK----GQDLFLHSFYESLELIKEKKL 118 (284)
Q Consensus 44 ~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~~g~~~~~k----~~~~~~~a~~~l~~~~~~~~~ 118 (284)
.++.|+..|+.=..................+.+.+. ..+...+++++|.-+... ..+.+.+.+..+...++....
T Consensus 40 ~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~~~~pd~vii~lGtND~~~~~~~~~~~~~~~l~~lv~~i~~~~~ 119 (208)
T cd01839 40 ENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALESHSPLDLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIRTAPI 119 (208)
T ss_pred CCeEEEecCcCCcceeccCccccCcchHHHHHHHHHhCCCCCEEEEeccccccccccCCCHHHHHHHHHHHHHHHHhccc
Confidence 468899888866543211000000000011222221 123467778888766432 346666666666665544210
Q ss_pred --CCCCeEEEEEecCC
Q 023290 119 --EVPSVHAVIIGSDM 132 (284)
Q Consensus 119 --~~~~~~l~i~G~~~ 132 (284)
..++.++++++..+
T Consensus 120 ~~~~~~~~iil~~pp~ 135 (208)
T cd01839 120 EPGMPAPKILIVAPPP 135 (208)
T ss_pred cccCCCCCEEEEeCCc
Confidence 01567777777543
No 458
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=20.79 E-value=2e+02 Score=17.04 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=17.1
Q ss_pred EEEeccccc-cccHHHHHHHHHHH
Q 023290 87 FAIINSVSR-GKGQDLFLHSFYES 109 (284)
Q Consensus 87 i~~~g~~~~-~k~~~~~~~a~~~l 109 (284)
+++.|++++ ..|+..+++.+.++
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~~~ 25 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAKEL 25 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHh
Confidence 457888886 78898888766554
No 459
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.78 E-value=4e+02 Score=20.50 Aligned_cols=13 Identities=0% Similarity=-0.031 Sum_probs=6.6
Q ss_pred ccCCCeEEEecCC
Q 023290 41 IKMPDTYVVHLGN 53 (284)
Q Consensus 41 ~~~~~i~vi~~g~ 53 (284)
.+.+++-++..+-
T Consensus 44 np~~~vGlv~fag 56 (187)
T cd01452 44 NPENNVGLMTMAG 56 (187)
T ss_pred CCCccEEEEEecC
Confidence 3445665555443
No 460
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=20.74 E-value=3.1e+02 Score=21.35 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=22.6
Q ss_pred HHhhccEEEEcCCCCcCccc----hhHHHHHhcCCCEEEcC
Q 023290 167 YLAAIDVLVQNSQAWGECFG----RITIEAMAFQLPVLGTA 203 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~----~~~~Eama~G~Pvi~~~ 203 (284)
.+..+|++|+.+.. ....+ -.+..++..|.++|+..
T Consensus 49 ~L~~~Dvvv~~~~~-~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 49 NLKGYDVVVFYNTG-GDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CHCT-SEEEEE-SS-CCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred HhcCCCEEEEECCC-CCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 47899999887762 11122 35778899999999875
No 461
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=20.73 E-value=4.7e+02 Score=21.29 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=53.7
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH-HHHHHHHHHHHcCCCCcEEEeccc---
Q 023290 86 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVNKT--- 161 (284)
Q Consensus 86 ~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~~~~--- 161 (284)
.++++|-+.-.-|...+-+-+..+.+. -++.|+|+......... ..++.-+...+.|+ ++.-+|..
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~k--------yk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~--dviT~GNH~wd 71 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSK--------YKIDFVIVNGENAAGGFGITEKIYKELLEAGA--DVITLGNHTWD 71 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHh--------hcCcEEEEcCccccCCcCCCHHHHHHHHHhCC--CEEeccccccc
Confidence 467888888777877777666666543 35678887652111000 23444444555565 57767642
Q ss_pred -cCHHHHHhhccEEEEcCC
Q 023290 162 -LTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 162 -~~~~~~~~~ad~~~~ps~ 179 (284)
.++.+++...+.++-|..
T Consensus 72 ~~ei~~~i~~~~~ilRP~N 90 (266)
T COG1692 72 QKEILDFIDNADRILRPAN 90 (266)
T ss_pred chHHHHHhhcccceeccCC
Confidence 688899999999887765
No 462
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=20.69 E-value=5.2e+02 Score=21.85 Aligned_cols=57 Identities=5% Similarity=0.040 Sum_probs=35.0
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
--+.-..++..+++...+..+.... .+++.++++|+. +.++....+.+...++.+..
T Consensus 8 DaMGGD~~P~~~v~ga~~al~~~~~----~~~~~i~LvG~~--------~~i~~~l~~~~~~~ri~iv~ 64 (316)
T PRK13846 8 DLMGGDHSPLVVWEVLGDVLLSSSS----EQPVEFTVFASS--------EVHHQILSNSPLSRSPRIIT 64 (316)
T ss_pred EccCCCcChHHHHHHHHHHHHhcCC----CCCeEEEEEeCH--------HHHHHHHHhCCCcCceEEEe
Confidence 3445567888888888777662210 166999999973 45555555543333566554
No 463
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.61 E-value=2.2e+02 Score=22.44 Aligned_cols=18 Identities=22% Similarity=-0.007 Sum_probs=15.3
Q ss_pred hHHHHHhcCCCEEEcCCC
Q 023290 188 ITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 188 ~~~Eama~G~Pvi~~~~~ 205 (284)
.+++++..|+|||+.|..
T Consensus 18 ~ai~al~~G~~Viv~Dde 35 (214)
T PRK01792 18 NAINAFKQGNGVLVLDDE 35 (214)
T ss_pred HHHHHHHCCCeEEEEeCC
Confidence 578899999999998754
No 464
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.59 E-value=2.9e+02 Score=21.54 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=31.2
Q ss_pred cEEEecc-ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 154 RVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 154 ~v~~~~~-~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
++.+.+. .+++.++-...++.++|.. ..|.=+++|+.+|..+|
T Consensus 78 ~FivSP~~~~~vi~~a~~~~i~~iPG~----~TptEi~~A~~~Ga~~v 121 (201)
T PRK06015 78 RFIVSPGTTQELLAAANDSDVPLLPGA----ATPSEVMALREEGYTVL 121 (201)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEeCCC----CCHHHHHHHHHCCCCEE
Confidence 3444443 3788888888999888864 23566888888898887
No 465
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=20.48 E-value=1.6e+02 Score=24.88 Aligned_cols=113 Identities=18% Similarity=0.115 Sum_probs=55.4
Q ss_pred cCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC
Q 023290 118 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 197 (284)
Q Consensus 118 ~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~ 197 (284)
...|.+-|+=+|.-.....+...+--++.++ ...+.|.|+++--.-+...+|++++-.. ..+.-++.+|.++.-+
T Consensus 173 i~~PrVgLLNiG~E~~KG~~~~kea~~LL~~---~~~inF~GnvEg~di~~G~~DVvV~DGF--tGNv~LKt~EG~~~~~ 247 (316)
T PRK13846 173 NQPPTLGLLNIGSEERKGTEAHRQTFRMLRE---TFGSAFLGNIESGDVFSGKVDIVVTDGF--TGNIFLKTAEGVFDFL 247 (316)
T ss_pred CCCCeEeEEECccccccCCHHHHHHHHHHhc---CCCCCcEeeeccccccCCCCCEEEeCCc--hHHHHHHHHHhHHHHH
Confidence 3558888887876433322333333333332 1136688887322224569999996544 2222344445544321
Q ss_pred C-------------EEEc-CCCCcceeeecCCceeeec-CCCCChHHHHHHHHHHh
Q 023290 198 P-------------VLGT-AAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLA 238 (284)
Q Consensus 198 P-------------vi~~-~~~~~~e~v~~~~~g~~~~-~~d~~~~~~~~~i~~l~ 238 (284)
. -+-+ ..+|. -++ |-+|.++. .+..+..++..+|....
T Consensus 248 ~~~lk~~~~~~~k~~~D~~~~gGA-~lL--Gl~g~vvk~HG~S~a~a~~nAi~~A~ 300 (316)
T PRK13846 248 RHILGDKLEKDIKRQLDYTIYPGS-IVC--GLSKLVIKCHGKACGTSLFGGISGSI 300 (316)
T ss_pred HHHHHHHHHHHHHhhCChhhcCCE-EEE--cCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 1 0101 12221 222 44554433 34445788888887654
No 466
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=20.46 E-value=2.1e+02 Score=23.72 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=21.1
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITI 190 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~ 190 (284)
..+...++.||++..-+. .++|.-+++
T Consensus 112 ~~le~~m~~~DvIfshs~--~g~f~kv~m 138 (355)
T PF11440_consen 112 PYLEGTMNEMDVIFSHSD--NGWFSKVLM 138 (355)
T ss_dssp SSHHHHHHH-SEEEES-T--TSHHHHTHH
T ss_pred ccHHHHHHhhcEEEeccc--cchHHHHHH
Confidence 688899999999999997 777777776
No 467
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=20.27 E-value=5.3e+02 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=23.5
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
+..|.+++.+.. .++..-.+-+|...|+|||+.+..
T Consensus 79 ~~vdgIiv~~~d-~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 79 QGYNAIIVSAVS-PDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred cCCCEEEEecCC-HHHHHHHHHHHHHCCCeEEEeCCC
Confidence 356666553321 344445677889999999998765
No 468
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=20.25 E-value=2.3e+02 Score=20.05 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=24.7
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHH-HHhcCCCEEEcCCCCc
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLGTAAGGT 207 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~E-ama~G~Pvi~~~~~~~ 207 (284)
+...++..+|+++..+. ....-..+.+ +...|+|+|.....+.
T Consensus 85 ~~~~~~~~~d~vi~~~d--~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 85 NIEELLKDYDIVIDCVD--SLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp HHHHHHHTSSEEEEESS--SHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred cccccccCCCEEEEecC--CHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 45566788899887764 2111122333 4456899998765444
No 469
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=20.21 E-value=5.3e+02 Score=21.69 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=88.8
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 94 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~ 94 (284)
+.-|-+|.....+.-.... +.+.+|.....|++-........|...-.+ +.-+.+...-++...|.++
T Consensus 56 ~~pdLiIsaGr~t~~~~~~-l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p-----------~HD~~~~~~Nvl~t~ga~~ 123 (311)
T PF06258_consen 56 PWPDLIISAGRRTAPAALA-LRRASGGRTKTVQIMDPRLPPRPFDLVIVP-----------EHDRLPRGPNVLPTLGAPN 123 (311)
T ss_pred CCCcEEEECCCchHHHHHH-HHHHcCCCceEEEEcCCCCCccccCEEEEC-----------cccCcCCCCceEecccCCC
Confidence 4667777766665444332 444444433334443333334433321111 0012223344556677776
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH-------HHHHHHHHHHHcCCCCcEEEeccc---cCH
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-------FESELRNYVMQKKIQDRVHFVNKT---LTV 164 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~-------~~~~l~~~~~~~~~~~~v~~~~~~---~~~ 164 (284)
.-. .+.+.++-..+..++... ..+.-.+++|+....... ....+..+++..+ ..+.+.... .+.
T Consensus 124 ~i~-~~~l~~a~~~~~~~~~~l---~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~ 197 (311)
T PF06258_consen 124 RIT-PERLAEAAAAWAPRLAAL---PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEA 197 (311)
T ss_pred cCC-HHHHHHHHHhhhhhhccC---CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHH
Confidence 543 345555555554444332 145556778874433221 3345555555555 245555542 333
Q ss_pred HHHHhh----cc-EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC--CcceeeecCCceeeecC
Q 023290 165 APYLAA----ID-VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG--GTTEIVVNGTTGLLHPV 222 (284)
Q Consensus 165 ~~~~~~----ad-~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~--~~~e~v~~~~~g~~~~~ 222 (284)
...+.. .+ +.+. + .++ .+...+.+++.--+++|... -+.|.+..|..-++++.
T Consensus 198 ~~~L~~~~~~~~~~~~~-~---~~~-~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l 257 (311)
T PF06258_consen 198 EAALRELLKDNPGVYIW-D---GTG-ENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPL 257 (311)
T ss_pred HHHHHHhhcCCCceEEe-c---CCC-CCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecC
Confidence 333322 22 3243 2 233 55788888888888777422 33555555544444443
No 470
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=20.16 E-value=7.1e+02 Score=23.18 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=47.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc---------cCHHHHHh-hccEEEEcCCCCcCccch-hH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---------LTVAPYLA-AIDVLVQNSQAWGECFGR-IT 189 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~---------~~~~~~~~-~ad~~~~ps~~~~e~~~~-~~ 189 (284)
.+-+++|+|+-.-+.-....-+....+++|...-..+++.+ +.+..+.. .++++|..-. ..... .+
T Consensus 68 ~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~LiItvD~---Gi~~~e~i 144 (575)
T PRK11070 68 EGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDN---GISSHAGV 144 (575)
T ss_pred CCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEEEEEcC---CcCCHHHH
Confidence 44588999985444333445566677777764333455532 22333332 4677775432 11111 23
Q ss_pred HHHHhcCCCEEEcCCCCcc
Q 023290 190 IEAMAFQLPVLGTAAGGTT 208 (284)
Q Consensus 190 ~Eama~G~Pvi~~~~~~~~ 208 (284)
-.|-..|+.||++|.-...
T Consensus 145 ~~a~~~gidvIVtDHH~~~ 163 (575)
T PRK11070 145 AHAHALGIPVLVTDHHLPG 163 (575)
T ss_pred HHHHHCCCCEEEECCCCCC
Confidence 3456789999999965433
No 471
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.06 E-value=3.7e+02 Score=21.40 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
.+++.+.+.++..+-+.+++..++-++.+. .|..+.++..++.++.++
T Consensus 49 ~~elkdk~lR~~AEfEN~RKR~erE~e~~~-~~A~e~~~kdLLpVlDnL 96 (223)
T PRK14142 49 VAELTADLQRVQADFANYRKRALRDQQAAA-DRAKASVVSQLLGVLDDL 96 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhchHhHH
Confidence 455666666666665555555555566554 478888888888777554
Done!