Query 023290
Match_columns 284
No_of_seqs 221 out of 1937
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 100.0 4.8E-38 1.6E-42 269.5 22.9 239 12-280 152-390 (394)
2 3c48_A Predicted glycosyltrans 100.0 1.8E-37 6.3E-42 269.3 24.0 250 12-281 180-431 (438)
3 3okp_A GDP-mannose-dependent a 100.0 2.3E-37 7.8E-42 264.9 20.1 240 11-279 135-383 (394)
4 3fro_A GLGA glycogen synthase; 100.0 2.9E-37 9.9E-42 267.8 20.1 249 12-283 184-438 (439)
5 3oy2_A Glycosyltransferase B73 100.0 6.7E-37 2.3E-41 263.9 20.3 240 10-280 125-395 (413)
6 2r60_A Glycosyl transferase, g 100.0 5.8E-37 2E-41 270.6 19.2 251 12-280 186-464 (499)
7 2iw1_A Lipopolysaccharide core 100.0 1.5E-36 5.3E-41 258.1 20.7 237 16-277 136-373 (374)
8 2x6q_A Trehalose-synthase TRET 100.0 5.2E-36 1.8E-40 258.6 23.4 237 14-276 173-415 (416)
9 1rzu_A Glycogen synthase 1; gl 100.0 8E-36 2.7E-40 262.4 18.1 248 13-281 203-481 (485)
10 2qzs_A Glycogen synthase; glyc 100.0 2.7E-35 9.2E-40 259.0 20.0 244 13-280 201-481 (485)
11 3vue_A GBSS-I, granule-bound s 100.0 6.8E-35 2.3E-39 257.7 18.0 239 13-276 238-512 (536)
12 3s28_A Sucrose synthase 1; gly 100.0 1E-34 3.6E-39 264.7 15.5 252 13-275 471-769 (816)
13 2gek_A Phosphatidylinositol ma 100.0 1.3E-33 4.4E-38 242.6 17.7 230 12-280 156-388 (406)
14 2bfw_A GLGA glycogen synthase; 100.0 1.8E-31 6.2E-36 207.5 18.0 190 49-260 2-200 (200)
15 2iuy_A Avigt4, glycosyltransfe 100.0 5.5E-32 1.9E-36 227.6 15.1 208 17-279 120-339 (342)
16 3qhp_A Type 1 capsular polysac 100.0 2.2E-29 7.5E-34 190.0 15.4 161 84-267 2-166 (166)
17 1uqt_A Alpha, alpha-trehalose- 100.0 2.7E-28 9.3E-33 212.3 23.9 217 44-275 219-454 (482)
18 3nb0_A Glycogen [starch] synth 100.0 1.4E-28 4.8E-33 215.9 21.6 258 14-280 258-638 (725)
19 2x0d_A WSAF; GT4 family, trans 100.0 1.5E-30 5.1E-35 223.6 8.1 209 19-277 197-411 (413)
20 2vsy_A XCC0866; transferase, g 100.0 8.2E-29 2.8E-33 221.8 18.4 217 16-280 328-564 (568)
21 3t5t_A Putative glycosyltransf 99.9 1E-26 3.5E-31 200.4 19.9 246 11-277 202-475 (496)
22 2f9f_A First mannosyl transfer 99.9 6.3E-28 2.2E-32 183.9 11.0 152 78-250 17-173 (177)
23 2hy7_A Glucuronosyltransferase 99.9 7.7E-28 2.6E-32 206.6 5.7 196 11-276 173-380 (406)
24 1vgv_A UDP-N-acetylglucosamine 99.9 3.6E-27 1.2E-31 201.2 9.2 235 15-279 140-380 (384)
25 3beo_A UDP-N-acetylglucosamine 99.9 1.2E-26 4E-31 197.3 10.1 220 16-273 150-374 (375)
26 1f0k_A MURG, UDP-N-acetylgluco 99.9 3.2E-25 1.1E-29 187.8 15.4 197 45-279 155-361 (364)
27 2xci_A KDO-transferase, 3-deox 99.9 2.8E-25 9.5E-30 188.6 12.4 207 12-260 149-365 (374)
28 1v4v_A UDP-N-acetylglucosamine 99.9 6.4E-22 2.2E-26 168.2 8.8 218 15-277 145-366 (376)
29 3rhz_A GTF3, nucleotide sugar 99.8 9.6E-19 3.3E-23 145.6 14.2 194 11-267 128-328 (339)
30 3dzc_A UDP-N-acetylglucosamine 99.8 1.4E-18 4.8E-23 148.4 13.2 224 15-273 165-395 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.7 1.1E-17 3.6E-22 143.2 12.0 219 17-277 170-393 (403)
32 3otg_A CALG1; calicheamicin, T 99.7 1.8E-15 6E-20 130.0 15.2 165 82-274 241-409 (412)
33 3s2u_A UDP-N-acetylglucosamine 99.6 3.4E-15 1.2E-19 126.1 14.2 193 44-276 153-355 (365)
34 3q3e_A HMW1C-like glycosyltran 99.6 1.7E-14 6E-19 126.6 11.5 227 12-278 386-626 (631)
35 2iyf_A OLED, oleandomycin glyc 99.5 2.1E-14 7.3E-19 124.0 11.1 166 83-276 232-402 (430)
36 4hwg_A UDP-N-acetylglucosamine 99.5 9.9E-15 3.4E-19 123.8 8.8 199 16-252 146-354 (385)
37 4fzr_A SSFS6; structural genom 99.5 1.7E-14 5.9E-19 123.3 7.3 157 82-269 226-396 (398)
38 3tsa_A SPNG, NDP-rhamnosyltran 99.5 5.9E-14 2E-18 119.7 9.6 164 83-273 218-388 (391)
39 3oti_A CALG3; calicheamicin, T 99.5 3.1E-13 1.1E-17 115.5 11.3 158 83-272 232-396 (398)
40 2p6p_A Glycosyl transferase; X 99.5 1.6E-12 5.5E-17 110.5 14.9 158 83-272 210-378 (384)
41 2o6l_A UDP-glucuronosyltransfe 99.4 1.4E-12 4.9E-17 97.9 12.0 133 82-247 20-161 (170)
42 2c4m_A Glycogen phosphorylase; 99.4 1.3E-11 4.4E-16 110.8 17.7 259 14-277 400-721 (796)
43 2gj4_A Glycogen phosphorylase, 99.4 2.4E-11 8.4E-16 109.3 19.5 257 13-277 434-756 (824)
44 1l5w_A Maltodextrin phosphoryl 99.4 2.4E-11 8.2E-16 109.0 18.1 256 14-277 411-732 (796)
45 3ia7_A CALG4; glycosysltransfe 99.4 3.7E-12 1.3E-16 108.7 12.3 164 82-274 230-399 (402)
46 2yjn_A ERYCIII, glycosyltransf 99.4 2.4E-12 8.1E-17 111.6 10.1 159 83-272 267-434 (441)
47 3rsc_A CALG2; TDP, enediyne, s 99.3 1.8E-11 6E-16 105.1 12.7 163 82-273 246-413 (415)
48 4gyw_A UDP-N-acetylglucosamine 99.3 2.5E-10 8.5E-15 104.3 20.0 185 75-279 514-709 (723)
49 2iya_A OLEI, oleandomycin glyc 99.2 3.2E-10 1.1E-14 97.6 12.9 161 83-272 255-420 (424)
50 1iir_A Glycosyltransferase GTF 99.1 1.5E-09 5.3E-14 93.1 14.0 157 83-277 238-400 (415)
51 3h4t_A Glycosyltransferase GTF 99.0 4E-09 1.4E-13 90.2 11.0 139 82-252 220-363 (404)
52 1rrv_A Glycosyltransferase GTF 98.9 1.3E-08 4.5E-13 87.3 12.7 137 83-252 237-381 (416)
53 4amg_A Snogd; transferase, pol 98.8 1.8E-08 6.2E-13 85.8 9.6 156 83-270 237-397 (400)
54 3hbm_A UDP-sugar hydrolase; PS 98.2 7E-06 2.4E-10 66.1 9.8 94 85-204 159-252 (282)
55 3l7i_A Teichoic acid biosynthe 98.2 6.3E-05 2.2E-09 69.1 16.2 224 15-274 477-716 (729)
56 2c1x_A UDP-glucose flavonoid 3 98.1 1.6E-05 5.3E-10 68.9 10.3 93 153-253 325-424 (456)
57 3hbf_A Flavonoid 3-O-glucosylt 98.1 0.00016 5.4E-09 62.4 15.3 149 82-253 272-426 (454)
58 1ygp_A Yeast glycogen phosphor 98.0 0.00058 2E-08 62.0 18.4 150 72-222 580-761 (879)
59 2pq6_A UDP-glucuronosyl/UDP-gl 98.0 0.00025 8.6E-09 61.8 15.6 148 83-254 295-452 (482)
60 1psw_A ADP-heptose LPS heptosy 97.7 0.00023 7.7E-09 59.2 10.2 111 71-202 167-286 (348)
61 2acv_A Triterpene UDP-glucosyl 97.7 0.0014 4.7E-08 56.8 15.3 80 153-239 332-424 (463)
62 2vch_A Hydroquinone glucosyltr 97.7 0.001 3.6E-08 57.9 14.3 80 155-239 341-428 (480)
63 2jzc_A UDP-N-acetylglucosamine 97.6 8.9E-05 3E-09 57.4 5.4 73 154-237 115-196 (224)
64 3tov_A Glycosyl transferase fa 97.2 0.0037 1.3E-07 52.0 11.1 110 72-203 173-287 (349)
65 2gt1_A Lipopolysaccharide hept 96.5 0.016 5.4E-07 47.5 9.4 136 82-240 177-322 (326)
66 3kht_A Response regulator; PSI 88.7 4.3 0.00015 27.9 10.2 112 121-239 4-127 (144)
67 3jte_A Response regulator rece 87.2 5.4 0.00019 27.2 9.5 110 123-241 4-124 (143)
68 1k68_A Phytochrome response re 87.1 5.2 0.00018 27.0 10.0 110 123-239 3-130 (140)
69 3heb_A Response regulator rece 86.6 6.2 0.00021 27.4 9.7 110 122-238 4-133 (152)
70 2zay_A Response regulator rece 86.5 5.4 0.00018 27.4 8.7 111 121-240 7-128 (147)
71 1ydw_A AX110P-like protein; st 84.3 14 0.00047 30.4 11.3 72 121-203 29-102 (362)
72 1k66_A Phytochrome response re 83.2 8.8 0.0003 26.2 10.1 112 121-239 5-137 (149)
73 4had_A Probable oxidoreductase 83.1 7.4 0.00025 31.8 9.2 69 121-203 47-117 (350)
74 3cg4_A Response regulator rece 82.1 9.5 0.00033 25.8 9.9 110 121-239 6-126 (142)
75 2pln_A HP1043, response regula 82.0 9.5 0.00032 25.7 9.0 107 121-240 17-133 (137)
76 3ilh_A Two component response 82.0 9.8 0.00033 25.9 9.6 115 121-242 8-141 (146)
77 1fy2_A Aspartyl dipeptidase; s 81.9 7.7 0.00026 29.7 8.2 81 121-203 30-120 (229)
78 3h5i_A Response regulator/sens 81.7 10 0.00034 25.8 11.3 111 121-240 4-124 (140)
79 3e9m_A Oxidoreductase, GFO/IDH 81.3 18 0.0006 29.3 10.7 69 121-203 28-98 (330)
80 1rcu_A Conserved hypothetical 81.3 1.7 5.7E-05 32.5 4.1 66 166-237 114-192 (195)
81 3hzh_A Chemotaxis response reg 81.1 12 0.0004 26.2 9.6 67 170-239 83-156 (157)
82 4fb5_A Probable oxidoreductase 81.1 5.6 0.00019 32.9 7.8 100 83-203 24-125 (393)
83 3lua_A Response regulator rece 80.7 9.2 0.00031 25.9 7.8 111 122-241 4-128 (140)
84 1qv9_A F420-dependent methylen 80.2 9.3 0.00032 29.3 7.7 86 119-224 29-122 (283)
85 4f3y_A DHPR, dihydrodipicolina 79.9 4.8 0.00016 31.8 6.5 45 162-208 65-109 (272)
86 2j48_A Two-component sensor ki 78.3 11 0.00037 24.2 8.2 107 124-239 3-117 (119)
87 3grc_A Sensor protein, kinase; 78.2 13 0.00045 25.1 10.6 110 121-239 5-126 (140)
88 3gt7_A Sensor protein; structu 77.4 15 0.00052 25.4 9.9 110 121-239 6-126 (154)
89 1qkk_A DCTD, C4-dicarboxylate 77.3 15 0.00052 25.3 10.4 111 122-241 3-122 (155)
90 3eul_A Possible nitrate/nitrit 76.9 15 0.00053 25.2 9.5 113 121-240 14-135 (152)
91 2qzj_A Two-component response 76.8 15 0.0005 24.9 8.1 109 122-239 4-120 (136)
92 1i3c_A Response regulator RCP1 76.6 16 0.00054 25.1 9.8 111 121-238 7-135 (149)
93 4e7p_A Response regulator; DNA 76.2 16 0.00055 25.1 9.1 68 170-240 66-140 (150)
94 2prs_A High-affinity zinc upta 75.8 8.1 0.00028 30.7 6.9 92 163-257 41-157 (284)
95 3h1g_A Chemotaxis protein CHEY 75.5 15 0.00052 24.4 9.6 110 122-239 5-126 (129)
96 3oqb_A Oxidoreductase; structu 75.3 8.9 0.00031 31.8 7.3 56 140-203 57-114 (383)
97 1p9l_A Dihydrodipicolinate red 74.5 17 0.00058 28.2 8.2 78 124-209 2-82 (245)
98 3u3x_A Oxidoreductase; structu 74.2 28 0.00096 28.5 10.0 69 121-203 49-119 (361)
99 1xvl_A Mn transporter, MNTC pr 74.1 15 0.00051 29.8 8.1 87 166-257 90-185 (321)
100 4gqa_A NAD binding oxidoreduct 72.4 12 0.0004 31.5 7.4 101 83-203 25-127 (412)
101 4h3v_A Oxidoreductase domain p 72.3 13 0.00043 30.7 7.6 68 122-203 37-106 (390)
102 3moi_A Probable dehydrogenase; 72.1 26 0.00088 29.1 9.4 68 121-203 26-95 (387)
103 2qvg_A Two component response 71.6 20 0.00069 24.1 9.4 110 122-238 7-133 (143)
104 3ijp_A DHPR, dihydrodipicolina 71.3 7.6 0.00026 30.9 5.6 45 162-208 80-124 (288)
105 4dad_A Putative pilus assembly 71.1 12 0.00043 25.4 6.3 110 121-239 19-140 (146)
106 2o1e_A YCDH; alpha-beta protei 70.9 19 0.00065 29.0 8.0 89 165-257 65-173 (312)
107 3en0_A Cyanophycinase; serine 70.7 14 0.00047 29.5 7.0 84 121-205 55-154 (291)
108 4hkt_A Inositol 2-dehydrogenas 70.6 27 0.00093 28.1 9.0 67 121-203 26-94 (331)
109 2rjn_A Response regulator rece 70.6 23 0.00079 24.3 9.8 112 121-241 6-127 (154)
110 3v5n_A Oxidoreductase; structu 70.2 33 0.0011 28.8 9.7 71 121-203 63-141 (417)
111 3rc1_A Sugar 3-ketoreductase; 70.2 19 0.00064 29.4 8.0 68 121-203 51-120 (350)
112 1toa_A Tromp-1, protein (perip 70.0 31 0.0011 27.8 9.1 88 166-257 83-178 (313)
113 3mz0_A Inositol 2-dehydrogenas 69.5 33 0.0011 27.8 9.4 70 121-203 26-97 (344)
114 3cea_A MYO-inositol 2-dehydrog 69.4 39 0.0013 27.3 9.8 69 121-203 32-102 (346)
115 2qsj_A DNA-binding response re 69.3 25 0.00084 24.1 9.1 110 122-239 3-123 (154)
116 3ujp_A Mn transporter subunit; 69.1 13 0.00046 29.8 6.7 88 165-257 75-171 (307)
117 3uuw_A Putative oxidoreductase 68.5 20 0.00068 28.6 7.7 68 121-203 30-97 (308)
118 1zh8_A Oxidoreductase; TM0312, 68.5 37 0.0013 27.5 9.4 69 121-203 43-113 (340)
119 2qxy_A Response regulator; reg 68.2 24 0.00083 23.7 8.5 111 122-242 4-123 (142)
120 3evn_A Oxidoreductase, GFO/IDH 68.2 15 0.0005 29.7 6.9 69 121-203 28-98 (329)
121 3cnb_A DNA-binding response re 68.2 24 0.00083 23.6 10.1 112 121-240 7-130 (143)
122 2l2q_A PTS system, cellobiose- 68.1 23 0.00078 23.3 10.0 76 123-203 5-83 (109)
123 3dty_A Oxidoreductase, GFO/IDH 67.6 33 0.0011 28.5 9.2 71 121-203 38-116 (398)
124 1s8n_A Putative antiterminator 67.2 34 0.0012 25.0 9.3 110 123-241 14-132 (205)
125 2gkg_A Response regulator homo 67.1 23 0.00079 23.0 8.7 108 123-240 6-125 (127)
126 3hv2_A Response regulator/HD d 66.8 28 0.00096 23.9 9.4 109 123-240 15-133 (153)
127 3hdg_A Uncharacterized protein 66.6 26 0.00088 23.4 9.2 111 121-240 6-125 (137)
128 2rdm_A Response regulator rece 65.9 26 0.00088 23.1 10.6 111 121-240 4-123 (132)
129 2ixa_A Alpha-N-acetylgalactosa 65.8 37 0.0013 28.7 9.2 75 121-203 43-122 (444)
130 3euw_A MYO-inositol dehydrogen 65.8 31 0.0011 27.9 8.5 68 121-203 27-96 (344)
131 3l4e_A Uncharacterized peptida 65.4 12 0.00041 28.1 5.4 77 122-203 27-120 (206)
132 3db2_A Putative NADPH-dependen 65.2 31 0.0011 28.1 8.4 68 121-203 28-97 (354)
133 1h6d_A Precursor form of gluco 65.0 22 0.00074 30.1 7.5 72 121-203 107-181 (433)
134 3hdv_A Response regulator; PSI 65.0 28 0.00095 23.2 10.1 112 121-241 6-128 (136)
135 3rqi_A Response regulator prot 64.8 33 0.0011 24.6 7.7 110 122-240 7-125 (184)
136 2iz6_A Molybdenum cofactor car 64.7 2.9 0.0001 30.6 1.8 67 167-239 104-173 (176)
137 3eod_A Protein HNR; response r 64.2 28 0.00095 22.9 9.5 111 121-240 6-126 (130)
138 3gi1_A LBP, laminin-binding pr 64.0 18 0.00063 28.7 6.5 88 165-257 55-162 (286)
139 3snk_A Response regulator CHEY 63.0 29 0.00099 23.1 6.8 110 121-239 13-132 (135)
140 1dbw_A Transcriptional regulat 63.0 29 0.00099 22.7 10.4 109 122-239 3-120 (126)
141 3nbm_A PTS system, lactose-spe 62.8 30 0.001 22.8 7.2 79 121-204 5-86 (108)
142 2qr3_A Two-component system re 62.7 31 0.0011 23.0 8.4 110 122-240 3-126 (140)
143 3m6m_D Sensory/regulatory prot 62.2 34 0.0011 23.2 9.4 111 121-240 13-136 (143)
144 3ec7_A Putative dehydrogenase; 62.0 37 0.0013 27.7 8.3 70 121-203 47-118 (357)
145 3kcn_A Adenylate cyclase homol 61.7 35 0.0012 23.3 10.3 111 122-242 4-125 (151)
146 2nzw_A Alpha1,3-fucosyltransfe 61.5 19 0.00064 29.9 6.2 84 162-248 223-308 (371)
147 3ohs_X Trans-1,2-dihydrobenzen 61.4 27 0.00091 28.2 7.2 68 122-203 28-97 (334)
148 3n53_A Response regulator rece 61.2 34 0.0012 22.9 9.8 108 123-240 4-122 (140)
149 1tlt_A Putative oxidoreductase 60.3 37 0.0013 27.1 7.9 68 121-203 29-96 (319)
150 2qv0_A Protein MRKE; structura 59.6 37 0.0013 22.8 10.0 112 121-240 8-127 (143)
151 3nhm_A Response regulator; pro 59.6 35 0.0012 22.5 10.1 108 123-240 5-122 (133)
152 3q2i_A Dehydrogenase; rossmann 59.5 59 0.002 26.4 9.1 68 121-203 37-106 (354)
153 3t6k_A Response regulator rece 59.3 37 0.0013 22.7 10.4 109 123-240 5-124 (136)
154 1dcf_A ETR1 protein; beta-alph 59.1 36 0.0012 22.6 7.3 111 121-240 6-129 (136)
155 1zq6_A Otcase, ornithine carba 58.8 75 0.0026 26.1 12.9 110 45-178 157-273 (359)
156 3gl9_A Response regulator; bet 58.3 36 0.0012 22.2 10.2 97 138-239 14-121 (122)
157 2xzm_B RPS0E; ribosome, transl 58.0 62 0.0021 24.9 8.4 110 96-225 47-162 (241)
158 1pq4_A Periplasmic binding pro 57.8 54 0.0018 26.0 8.3 31 227-257 141-173 (291)
159 2ho3_A Oxidoreductase, GFO/IDH 57.7 35 0.0012 27.3 7.3 69 121-203 24-93 (325)
160 3mfq_A TROA, high-affinity zin 57.6 59 0.002 25.6 8.4 85 166-257 51-144 (282)
161 3f6c_A Positive transcription 57.4 38 0.0013 22.3 10.2 109 123-240 2-120 (134)
162 3m2t_A Probable dehydrogenase; 57.1 20 0.0007 29.3 5.9 69 121-203 29-99 (359)
163 3hh8_A Metal ABC transporter s 57.1 42 0.0014 26.7 7.5 88 165-256 61-163 (294)
164 3cfy_A Putative LUXO repressor 57.0 41 0.0014 22.5 9.1 107 124-239 6-121 (137)
165 3ezy_A Dehydrogenase; structur 56.8 46 0.0016 26.9 8.0 69 121-203 25-95 (344)
166 3kto_A Response regulator rece 56.7 31 0.0011 23.0 6.1 109 122-239 6-125 (136)
167 1zco_A 2-dehydro-3-deoxyphosph 56.7 68 0.0023 25.0 10.8 102 89-204 27-138 (262)
168 3cx3_A Lipoprotein; zinc-bindi 56.3 33 0.0011 27.1 6.7 88 166-257 54-160 (284)
169 3mm4_A Histidine kinase homolo 56.0 57 0.002 23.9 8.7 111 122-242 61-198 (206)
170 1p2f_A Response regulator; DRR 56.0 36 0.0012 25.1 6.8 106 124-239 4-116 (220)
171 3ehd_A Uncharacterized conserv 54.9 24 0.00081 25.4 5.1 36 166-202 65-103 (162)
172 3e18_A Oxidoreductase; dehydro 54.6 72 0.0025 26.0 8.8 67 121-203 28-96 (359)
173 1jbe_A Chemotaxis protein CHEY 54.1 43 0.0015 21.8 10.2 111 121-239 3-124 (128)
174 2b4a_A BH3024; flavodoxin-like 53.0 47 0.0016 22.0 10.2 111 121-241 14-132 (138)
175 3i42_A Response regulator rece 52.9 45 0.0015 21.7 9.1 110 122-240 3-122 (127)
176 1xv5_A AGT, DNA alpha-glucosyl 52.9 71 0.0024 24.0 16.1 164 88-271 201-398 (401)
177 3c97_A Signal transduction his 52.8 48 0.0017 22.1 11.1 108 123-239 11-129 (140)
178 2jba_A Phosphate regulon trans 52.7 45 0.0015 21.7 7.6 107 124-239 4-121 (127)
179 2f62_A Nucleoside 2-deoxyribos 52.3 61 0.0021 23.1 7.2 38 165-203 62-105 (161)
180 4fyk_A Deoxyribonucleoside 5'- 52.2 13 0.00046 26.4 3.4 38 165-202 63-100 (152)
181 1tvm_A PTS system, galactitol- 51.9 18 0.0006 24.1 3.9 53 125-179 25-78 (113)
182 3lte_A Response regulator; str 51.7 48 0.0016 21.7 9.7 111 121-240 5-125 (132)
183 2p2s_A Putative oxidoreductase 50.7 67 0.0023 25.8 8.0 69 121-203 27-97 (336)
184 3vk5_A MOEO5; TIM barrel, tran 50.3 28 0.00096 27.6 5.2 76 93-179 45-125 (286)
185 3btv_A Galactose/lactose metab 49.9 1.1E+02 0.0036 25.9 9.3 71 121-203 48-126 (438)
186 1dc7_A NTRC, nitrogen regulati 49.1 45 0.0015 21.4 5.8 106 124-238 5-119 (124)
187 4fe3_A Cytosolic 5'-nucleotida 48.9 94 0.0032 24.3 9.0 62 121-192 229-295 (297)
188 3cg0_A Response regulator rece 48.8 56 0.0019 21.6 10.3 110 121-239 8-127 (140)
189 2hqr_A Putative transcriptiona 48.8 67 0.0023 23.6 7.3 94 138-240 12-115 (223)
190 1ys7_A Transcriptional regulat 48.3 80 0.0027 23.3 11.7 109 122-239 7-124 (233)
191 1p6q_A CHEY2; chemotaxis, sign 48.0 55 0.0019 21.3 9.1 109 123-239 7-126 (129)
192 3dfz_A SIRC, precorrin-2 dehyd 48.0 88 0.003 23.7 13.0 127 121-260 53-188 (223)
193 1f06_A MESO-diaminopimelate D- 47.9 35 0.0012 27.4 5.8 41 163-205 51-91 (320)
194 3bq9_A Predicted rossmann fold 47.5 26 0.00088 29.8 4.9 70 165-240 240-332 (460)
195 3r0j_A Possible two component 47.4 89 0.003 23.6 10.4 109 122-239 23-140 (250)
196 1mvo_A PHOP response regulator 47.3 58 0.002 21.4 10.2 109 123-240 4-121 (136)
197 1vs1_A 3-deoxy-7-phosphoheptul 47.3 1E+02 0.0035 24.2 10.1 64 137-204 89-153 (276)
198 3f6p_A Transcriptional regulat 47.0 55 0.0019 21.1 9.9 107 124-239 4-118 (120)
199 2glx_A 1,5-anhydro-D-fructose 46.7 77 0.0026 25.3 7.7 69 121-203 23-93 (332)
200 3a10_A Response regulator; pho 46.7 54 0.0018 20.8 11.1 106 124-238 3-115 (116)
201 1e2b_A Enzyme IIB-cellobiose; 46.7 58 0.002 21.3 8.6 65 125-194 7-71 (106)
202 2r25_B Osmosensing histidine p 46.3 61 0.0021 21.4 9.9 108 124-239 4-126 (133)
203 2gwr_A DNA-binding response re 46.3 90 0.0031 23.3 11.7 108 123-239 6-121 (238)
204 1zgz_A Torcad operon transcrip 45.7 58 0.002 20.9 10.1 106 124-238 4-117 (122)
205 3lzd_A DPH2; diphthamide biosy 45.3 26 0.00091 29.0 4.6 74 122-202 265-341 (378)
206 2lpm_A Two-component response 45.2 35 0.0012 23.0 4.6 109 121-238 7-120 (123)
207 3on1_A BH2414 protein; structu 44.7 32 0.0011 22.3 4.2 58 97-170 21-78 (101)
208 1mb3_A Cell division response 44.6 60 0.0021 20.8 10.2 107 124-239 3-120 (124)
209 3qy9_A DHPR, dihydrodipicolina 43.9 28 0.00096 26.9 4.4 57 162-223 47-108 (243)
210 3kip_A 3-dehydroquinase, type 43.9 87 0.003 22.5 7.5 64 171-239 84-157 (167)
211 1t35_A Hypothetical protein YV 43.6 27 0.00091 25.8 4.0 40 163-206 90-137 (191)
212 2vxb_A DNA repair protein RHP9 43.5 38 0.0013 26.0 5.1 76 121-203 4-97 (241)
213 3c3m_A Response regulator rece 42.9 71 0.0024 21.2 8.6 109 123-240 4-123 (138)
214 3b2n_A Uncharacterized protein 42.9 69 0.0024 21.1 9.5 111 123-240 4-123 (133)
215 3hly_A Flavodoxin-like domain; 42.2 87 0.003 22.0 7.9 38 168-205 49-91 (161)
216 3glr_A NAD-dependent deacetyla 42.1 39 0.0013 26.8 5.0 99 153-254 175-279 (285)
217 2nvw_A Galactose/lactose metab 42.1 96 0.0033 26.6 7.9 71 121-203 67-145 (479)
218 1dih_A Dihydrodipicolinate red 42.0 23 0.00079 27.9 3.7 42 163-206 65-106 (273)
219 3bbn_B Ribosomal protein S2; s 41.9 1.1E+02 0.0037 23.4 7.3 47 171-225 158-205 (231)
220 3cz5_A Two-component response 41.9 79 0.0027 21.4 11.1 110 121-239 4-124 (153)
221 1i1q_B Anthranilate synthase c 41.8 98 0.0033 22.5 7.4 63 138-202 12-82 (192)
222 2a9f_A Putative malic enzyme ( 41.4 1.6E+02 0.0053 24.7 9.2 80 114-202 180-287 (398)
223 3to5_A CHEY homolog; alpha(5)b 41.2 82 0.0028 21.4 10.1 111 121-239 11-132 (134)
224 4gmf_A Yersiniabactin biosynth 41.0 41 0.0014 27.8 5.2 94 83-203 6-101 (372)
225 3crn_A Response regulator rece 40.3 77 0.0026 20.8 10.3 108 123-239 4-120 (132)
226 1vl6_A Malate oxidoreductase; 40.0 1.6E+02 0.0055 24.5 10.4 73 119-200 189-290 (388)
227 2ayx_A Sensor kinase protein R 40.0 1.2E+02 0.0041 23.0 11.0 109 122-239 129-246 (254)
228 4h08_A Putative hydrolase; GDS 39.8 1E+02 0.0035 22.1 9.4 46 83-131 75-120 (200)
229 3cu5_A Two component transcrip 39.8 82 0.0028 21.0 9.8 67 170-239 49-122 (141)
230 3q9s_A DNA-binding response re 39.4 1.2E+02 0.0042 22.9 8.9 108 123-239 38-153 (249)
231 3sqd_A PAX-interacting protein 39.3 41 0.0014 25.4 4.6 64 122-204 16-79 (219)
232 4ekn_B Aspartate carbamoyltran 39.3 1.5E+02 0.005 23.8 9.7 87 72-178 140-226 (306)
233 2khz_A C-MYC-responsive protei 39.2 28 0.00097 24.9 3.5 34 166-202 73-109 (165)
234 4ew6_A D-galactose-1-dehydroge 38.6 86 0.0029 25.2 6.8 40 162-203 70-112 (330)
235 1xhf_A DYE resistance, aerobic 38.5 77 0.0026 20.3 10.1 107 124-239 5-119 (123)
236 3v7q_A Probable ribosomal prot 38.5 40 0.0014 21.8 3.9 58 97-170 22-79 (101)
237 2pl1_A Transcriptional regulat 38.4 76 0.0026 20.2 10.7 97 138-239 12-117 (121)
238 2ohh_A Type A flavoprotein FPR 38.2 90 0.0031 25.7 7.0 108 87-202 228-349 (404)
239 1srr_A SPO0F, sporulation resp 38.2 79 0.0027 20.3 9.3 107 124-239 5-120 (124)
240 3ip3_A Oxidoreductase, putativ 37.8 72 0.0024 25.7 6.2 74 121-203 23-98 (337)
241 1s2d_A Purine trans deoxyribos 36.9 31 0.0011 24.9 3.4 38 166-203 77-116 (167)
242 1xea_A Oxidoreductase, GFO/IDH 36.9 1.1E+02 0.0038 24.3 7.2 68 121-203 26-94 (323)
243 1wju_A NEDD8 ultimate buster-1 36.8 54 0.0018 21.3 4.2 53 24-90 38-90 (100)
244 1qo0_D AMIR; binding protein, 36.6 1.1E+02 0.0039 21.7 12.4 109 121-242 11-127 (196)
245 3p2y_A Alanine dehydrogenase/p 36.6 1.4E+02 0.0048 24.8 7.7 47 163-209 258-310 (381)
246 2z1d_A Hydrogenase expression/ 36.5 44 0.0015 27.4 4.4 83 120-204 137-228 (372)
247 2czc_A Glyceraldehyde-3-phosph 36.3 1.1E+02 0.0038 24.7 7.1 40 162-203 71-110 (334)
248 1ydg_A Trp repressor binding p 35.9 77 0.0026 23.3 5.7 39 163-201 71-120 (211)
249 3czc_A RMPB; alpha/beta sandwi 35.9 34 0.0012 22.5 3.3 53 125-179 22-76 (110)
250 3nvt_A 3-deoxy-D-arabino-heptu 35.7 1.9E+02 0.0065 24.0 10.6 102 89-204 146-257 (385)
251 1yio_A Response regulatory pro 35.6 1.2E+02 0.0042 21.8 12.6 109 123-240 5-122 (208)
252 3g8r_A Probable spore coat pol 35.6 1.4E+02 0.0049 24.4 7.4 61 138-203 79-142 (350)
253 1vr6_A Phospho-2-dehydro-3-deo 35.5 1.8E+02 0.0062 23.8 11.5 97 96-205 116-222 (350)
254 1yco_A Branched-chain phosphot 34.8 1.7E+02 0.0057 23.1 10.2 27 169-196 211-237 (279)
255 2yv1_A Succinyl-COA ligase [AD 34.4 1.7E+02 0.0058 23.1 7.8 35 162-198 60-96 (294)
256 1e5d_A Rubredoxin\:oxygen oxid 34.4 1.9E+02 0.0065 23.6 11.5 106 88-202 222-342 (402)
257 3v7e_A Ribosome-associated pro 34.1 82 0.0028 19.4 5.6 55 97-167 14-68 (82)
258 2oqr_A Sensory transduction pr 33.9 1.4E+02 0.0048 21.9 8.6 109 123-240 5-121 (230)
259 2vqe_B 30S ribosomal protein S 33.3 1.5E+02 0.0051 23.1 6.9 48 170-225 158-206 (256)
260 2m1z_A LMO0427 protein; homolo 33.0 97 0.0033 20.3 5.0 60 139-204 22-85 (106)
261 2etx_A Mediator of DNA damage 33.0 31 0.0011 25.7 3.0 61 121-203 11-71 (209)
262 1weh_A Conserved hypothetical 32.9 30 0.001 25.0 2.8 39 166-210 93-140 (171)
263 1vq8_F 50S ribosomal protein L 32.6 1.1E+02 0.0036 20.5 5.4 58 97-169 32-89 (120)
264 2jvf_A De novo protein M7; tet 32.6 80 0.0028 18.8 5.0 63 92-159 24-87 (96)
265 2a9o_A Response regulator; ess 32.0 98 0.0033 19.5 10.7 97 138-239 13-117 (120)
266 3n8k_A 3-dehydroquinate dehydr 31.1 1.5E+02 0.0051 21.4 8.9 65 170-239 94-168 (172)
267 2nu8_A Succinyl-COA ligase [AD 30.4 2E+02 0.0068 22.6 8.6 37 162-200 54-92 (288)
268 2ki0_A DS119; beta-alpha-beta, 30.4 11 0.00037 18.3 0.0 32 122-159 4-35 (36)
269 2wqp_A Polysialic acid capsule 30.4 1.4E+02 0.0047 24.5 6.5 61 138-203 92-155 (349)
270 3kux_A Putative oxidoreductase 30.0 55 0.0019 26.5 4.3 40 162-203 57-98 (352)
271 1r5j_A Putative phosphotransac 29.8 77 0.0026 25.7 5.1 25 169-194 269-293 (337)
272 3h75_A Periplasmic sugar-bindi 29.8 80 0.0027 25.3 5.2 34 170-205 62-95 (350)
273 3iz6_A 40S ribosomal protein S 29.6 2.1E+02 0.0073 22.8 8.2 112 95-225 55-170 (305)
274 1ny5_A Transcriptional regulat 28.9 2.4E+02 0.0083 23.1 8.7 100 138-242 12-120 (387)
275 3geb_A EYES absent homolog 2; 28.6 1.1E+02 0.0038 23.8 5.3 52 104-171 218-269 (274)
276 3gd5_A Otcase, ornithine carba 28.5 2.3E+02 0.008 22.8 11.9 87 72-178 146-233 (323)
277 1vi6_A 30S ribosomal protein S 28.4 1.9E+02 0.0064 21.7 7.1 50 168-225 113-163 (208)
278 1kgs_A DRRD, DNA binding respo 28.3 1.7E+02 0.0059 21.2 10.7 107 124-239 4-119 (225)
279 3csu_A Protein (aspartate carb 28.3 2.3E+02 0.0079 22.7 9.1 87 72-178 143-229 (310)
280 2dc1_A L-aspartate dehydrogena 28.1 1.6E+02 0.0055 22.1 6.4 42 162-205 41-83 (236)
281 3u80_A 3-dehydroquinate dehydr 28.1 1.6E+02 0.0054 20.8 9.1 64 170-238 70-146 (151)
282 1oi7_A Succinyl-COA synthetase 27.7 2E+02 0.0067 22.7 7.0 35 162-198 54-90 (288)
283 1dz3_A Stage 0 sporulation pro 27.6 1.3E+02 0.0043 19.5 7.2 68 170-240 48-123 (130)
284 1vli_A Spore coat polysacchari 27.6 1.3E+02 0.0045 25.0 6.0 59 138-203 102-165 (385)
285 2qip_A Protein of unknown func 27.5 1.6E+02 0.0054 20.8 5.9 49 121-176 109-158 (165)
286 3e82_A Putative oxidoreductase 27.4 59 0.002 26.6 4.0 40 162-203 57-98 (364)
287 1f8y_A Nucleoside 2-deoxyribos 27.4 43 0.0015 23.8 2.8 38 166-203 74-113 (157)
288 3l3e_A DNA topoisomerase 2-bin 26.9 83 0.0028 20.3 4.0 67 121-203 17-83 (107)
289 1w41_A 50S ribosomal protein L 26.6 1.3E+02 0.0044 19.2 5.6 57 97-168 19-75 (101)
290 3aek_B Light-independent proto 26.4 3.2E+02 0.011 23.7 12.8 76 122-202 153-234 (525)
291 3gdo_A Uncharacterized oxidore 26.2 61 0.0021 26.4 3.9 40 162-203 55-96 (358)
292 2kk8_A Uncharacterized protein 26.2 80 0.0027 19.4 3.6 30 24-53 29-58 (84)
293 3fhl_A Putative oxidoreductase 26.0 51 0.0017 26.9 3.4 40 162-203 55-96 (362)
294 1dxh_A Ornithine carbamoyltran 25.8 2.7E+02 0.0091 22.6 10.5 109 46-178 123-232 (335)
295 4hyl_A Stage II sporulation pr 25.8 1.4E+02 0.0047 19.3 5.3 59 85-160 44-104 (117)
296 1vmi_A Putative phosphate acet 25.7 1.1E+02 0.0037 25.1 5.2 25 169-194 272-296 (355)
297 1tmy_A CHEY protein, TMY; chem 25.4 1.3E+02 0.0045 18.9 9.7 107 124-238 4-119 (120)
298 4e5v_A Putative THUA-like prot 25.0 1.6E+02 0.0056 23.1 6.0 35 167-203 55-93 (281)
299 1rlg_A 50S ribosomal protein L 25.0 97 0.0033 20.6 4.1 58 97-169 30-87 (119)
300 2fc3_A 50S ribosomal protein L 24.6 1.1E+02 0.0038 20.5 4.4 57 97-168 31-87 (124)
301 1th8_B Anti-sigma F factor ant 24.6 1E+02 0.0035 19.8 4.2 57 86-159 46-104 (116)
302 2a33_A Hypothetical protein; s 24.5 63 0.0022 24.3 3.4 37 166-206 105-149 (215)
303 2x5n_A SPRPN10, 26S proteasome 24.3 2.1E+02 0.0071 20.8 7.5 11 42-52 44-54 (192)
304 2hj8_A Interferon-induced 17 k 24.2 1.1E+02 0.0037 18.8 4.0 30 25-54 24-53 (88)
305 3al2_A DNA topoisomerase 2-bin 24.1 83 0.0029 24.0 4.1 68 121-204 8-75 (235)
306 3bch_A 40S ribosomal protein S 24.0 2.5E+02 0.0086 21.7 7.0 92 122-225 104-199 (253)
307 1pvv_A Otcase, ornithine carba 24.0 2.8E+02 0.0096 22.2 11.1 107 46-178 124-231 (315)
308 1lc0_A Biliverdin reductase A; 23.9 68 0.0023 25.3 3.7 40 162-203 55-96 (294)
309 3lwz_A 3-dehydroquinate dehydr 23.7 2E+02 0.0067 20.3 8.2 65 170-239 73-147 (153)
310 2amj_A Modulator of drug activ 23.7 1.1E+02 0.0036 22.6 4.5 25 163-187 63-87 (204)
311 3f4l_A Putative oxidoreductase 23.5 56 0.0019 26.4 3.1 40 162-203 55-96 (345)
312 3j21_Z 50S ribosomal protein L 23.4 1.5E+02 0.0051 18.9 6.4 58 97-169 18-75 (99)
313 1ydh_A AT5G11950; structural g 23.1 74 0.0025 24.0 3.5 38 165-206 100-145 (216)
314 1wx7_A Ubiquilin 3; ubiquitin- 23.1 1.2E+02 0.0042 19.4 4.3 30 24-53 35-64 (106)
315 3h9u_A Adenosylhomocysteinase; 23.0 1.8E+02 0.0061 24.7 6.1 75 121-203 210-298 (436)
316 2i2c_A Probable inorganic poly 22.8 91 0.0031 24.3 4.2 53 169-239 34-92 (272)
317 2lnd_A De novo designed protei 22.8 92 0.0031 19.1 3.2 44 194-239 49-100 (112)
318 4dio_A NAD(P) transhydrogenase 22.7 3.4E+02 0.012 22.7 8.1 48 163-210 268-321 (405)
319 1wh3_A 59 kDa 2'-5'-oligoadeny 22.5 1.2E+02 0.0041 18.4 4.0 29 25-53 27-55 (87)
320 1vlv_A Otcase, ornithine carba 22.4 3.1E+02 0.011 22.1 10.5 108 46-178 136-244 (325)
321 3c3w_A Two component transcrip 22.4 1E+02 0.0036 22.7 4.3 67 170-239 47-120 (225)
322 3i23_A Oxidoreductase, GFO/IDH 22.2 67 0.0023 26.0 3.4 69 121-203 26-96 (349)
323 3r8n_B 30S ribosomal protein S 21.8 1.7E+02 0.0057 22.1 5.2 35 186-225 162-197 (218)
324 2uyz_B Small ubiquitin-related 21.7 90 0.0031 18.6 3.2 30 26-55 24-53 (79)
325 1a04_A Nitrate/nitrite respons 21.6 2.3E+02 0.0079 20.4 8.9 111 121-239 4-124 (215)
326 1sbo_A Putative anti-sigma fac 21.3 1.6E+02 0.0055 18.5 4.8 55 84-155 45-101 (110)
327 4ep1_A Otcase, ornithine carba 21.2 3.4E+02 0.011 22.1 11.5 87 72-178 168-255 (340)
328 3c1a_A Putative oxidoreductase 21.1 76 0.0026 25.2 3.5 40 162-203 59-100 (315)
329 1yqb_A Ubiquilin 3; structural 21.0 1.2E+02 0.0041 19.3 3.8 29 25-53 41-69 (100)
330 3upl_A Oxidoreductase; rossman 20.9 3.9E+02 0.013 22.7 8.6 41 162-203 97-139 (446)
331 1vi1_A Fatty acid/phospholipid 20.8 1.5E+02 0.0052 24.1 5.2 90 97-191 148-238 (345)
332 2kan_A Uncharacterized protein 20.8 1.7E+02 0.0057 18.4 4.6 29 25-53 34-62 (94)
333 2waa_A Acetyl esterase, xylan 20.6 3.3E+02 0.011 21.8 7.7 45 83-130 226-273 (347)
334 3fiq_A OBP1, RCG36470, odorant 20.5 2.1E+02 0.0071 19.9 5.4 39 123-161 113-152 (157)
335 1duv_G Octase-1, ornithine tra 20.5 3.4E+02 0.012 21.9 12.2 109 46-178 122-232 (333)
336 3cpq_A 50S ribosomal protein L 20.5 1.9E+02 0.0064 18.9 5.2 58 97-169 24-81 (110)
337 3iz5_f 60S ribosomal protein L 20.5 1.9E+02 0.0066 19.0 5.5 57 97-169 29-86 (112)
338 3u5e_c L32, RP73, YL38, 60S ri 20.4 97 0.0033 20.1 3.3 57 97-168 25-81 (105)
339 4b4t_W RPN10, 26S proteasome r 20.3 3.1E+02 0.011 21.4 7.3 22 219-242 219-240 (268)
340 2af4_C Phosphate acetyltransfe 20.3 1.3E+02 0.0045 24.3 4.7 25 169-194 265-289 (333)
341 3o9z_A Lipopolysaccaride biosy 20.1 91 0.0031 24.8 3.7 33 169-203 71-103 (312)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.8e-38 Score=269.50 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=209.0
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|....+.+.+. ++. ..++.++|||+|.+.+.+.. +..++++++++++.++++++|
T Consensus 152 ~~~~~ad~ii~~s~~~~~~~~~~----~~~-~~~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G 218 (394)
T 2jjm_A 152 FGIEQSDVVTAVSHSLINETHEL----VKP-NKDIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHIS 218 (394)
T ss_dssp HHHHHSSEEEESCHHHHHHHHHH----TCC-SSCEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEEC
T ss_pred HHHhhCCEEEECCHHHHHHHHHh----hCC-cccEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEee
Confidence 44667999999999988875543 433 57899999999988776543 255778899877889999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
++.+.||++.+++|+..+.+ + ++++|+++|.++ ..+.+++.++++++.++|.|+|+.+++..+|+.|
T Consensus 219 ~~~~~Kg~~~li~a~~~l~~-------~-~~~~l~i~G~g~-----~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~a 285 (394)
T 2jjm_A 219 NFRKVKRVQDVVQAFAKIVT-------E-VDAKLLLVGDGP-----EFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMS 285 (394)
T ss_dssp CCCGGGTHHHHHHHHHHHHH-------S-SCCEEEEECCCT-----THHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTC
T ss_pred ccccccCHHHHHHHHHHHHh-------h-CCCEEEEECCch-----HHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhC
Confidence 99999999999999998865 2 578999999876 5688999999999989999999989999999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
|++++||. .|++|++++|||+||+|||+++.++..+++.++.+|++++++| +++++++|.++++|++.++++++++
T Consensus 286 dv~v~ps~--~e~~~~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~ 361 (394)
T 2jjm_A 286 DLMLLLSE--KESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERA 361 (394)
T ss_dssp SEEEECCS--CCSCCHHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CEEEeccc--cCCCchHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999 8999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 252 YERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
++.+.+.|+|+.+++++.++|++++++.+
T Consensus 362 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 362 RESVYEQFRSEKIVSQYETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 99998899999999999999999987654
No 2
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.8e-37 Score=269.35 Aligned_cols=250 Identities=18% Similarity=0.269 Sum_probs=213.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.++++|....+.+.+ .+|.+..++.+||||+|.+.+.+.... .+..++++++++++.++|+++|
T Consensus 180 ~~~~~~d~ii~~s~~~~~~~~~----~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r~~~~~~~~~~~i~~~G 250 (438)
T 3c48_A 180 QLVDNADVLAVNTQEEMQDLMH----HYDADPDRISVVSPGADVELYSPGNDR-----ATERSRRELGIPLHTKVVAFVG 250 (438)
T ss_dssp HHHHHCSEEEESSHHHHHHHHH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHHHTTCCSSSEEEEEES
T ss_pred HHHhcCCEEEEcCHHHHHHHHH----HhCCChhheEEecCCccccccCCcccc-----hhhhhHHhcCCCCCCcEEEEEe
Confidence 3456799999999988887544 478888899999999998877654321 0244788999988899999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
++.+.||++.+++++..+.+..+ ..+++|+++|.... .....+.++++++++++.++|.|+|++ +++..+|+
T Consensus 251 ~~~~~Kg~~~li~a~~~l~~~~p-----~~~~~l~i~G~~~~-~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~ 324 (438)
T 3c48_A 251 RLQPFKGPQVLIKAVAALFDRDP-----DRNLRVIICGGPSG-PNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR 324 (438)
T ss_dssp CBSGGGCHHHHHHHHHHHHHHCT-----TCSEEEEEECCBC-------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHH
T ss_pred eecccCCHHHHHHHHHHHHhhCC-----CcceEEEEEeCCCC-CCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHH
Confidence 99999999999999999866321 02899999998211 012668899999999999999999998 78999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 249 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~ 249 (284)
.||++++||. .|+||++++|||+||+|||+++.++..+++.++.+|++++++| +++++++|.++++|++.+.++++
T Consensus 325 ~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~ 400 (438)
T 3c48_A 325 AADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS--PHAWADALATLLDDDETRIRMGE 400 (438)
T ss_dssp HCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCC--HHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCC--HHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999998 8999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcC
Q 023290 250 RGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 281 (284)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (284)
++++.+.+ |+|+.+++++.++|++++++.+.
T Consensus 401 ~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 401 DAVEHART-FSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHh-CCHHHHHHHHHHHHHHHhhhccc
Confidence 99999988 99999999999999999987643
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.3e-37 Score=264.92 Aligned_cols=240 Identities=24% Similarity=0.328 Sum_probs=210.8
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|....+.+.+. ++ ..+++.++|||+|.+.+.+.... .+..++++++++++.++++++
T Consensus 135 ~~~~~~~d~ii~~s~~~~~~~~~~----~~-~~~~~~vi~ngv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~ 204 (394)
T 3okp_A 135 RKIGTEVDVLTYISQYTLRRFKSA----FG-SHPTFEHLPSGVDVKRFTPATPE-----DKSATRKKLGFTDTTPVIACN 204 (394)
T ss_dssp HHHHHHCSEEEESCHHHHHHHHHH----HC-SSSEEEECCCCBCTTTSCCCCHH-----HHHHHHHHTTCCTTCCEEEEE
T ss_pred HHHHHhCCEEEEcCHHHHHHHHHh----cC-CCCCeEEecCCcCHHHcCCCCch-----hhHHHHHhcCCCcCceEEEEE
Confidence 345678999999999988876553 43 45789999999999877652221 147789999999888999999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.+.||++.+++++..+.+ +.++++|+|+|.++ ..+.+++++ .++.++|.++|++ +++..+|
T Consensus 205 G~~~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~ 270 (394)
T 3okp_A 205 SRLVPRKGQDSLIKAMPQVIA-------ARPDAQLLIVGSGR-----YESTLRRLA--TDVSQNVKFLGRLEYQDMINTL 270 (394)
T ss_dssp SCSCGGGCHHHHHHHHHHHHH-------HSTTCEEEEECCCT-----THHHHHHHT--GGGGGGEEEEESCCHHHHHHHH
T ss_pred eccccccCHHHHHHHHHHHHh-------hCCCeEEEEEcCch-----HHHHHHHHH--hcccCeEEEcCCCCHHHHHHHH
Confidence 999999999999999998876 33899999999876 567777777 5667899999998 8999999
Q ss_pred hhccEEEEcCCCCc-------CccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 169 AAIDVLVQNSQAWG-------ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 169 ~~ad~~~~ps~~~~-------e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+.||++++||. . |++|++++|||++|+|||+++.++..+++.++ +|++++++| +++++++|.++++++
T Consensus 271 ~~ad~~v~ps~--~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 271 AAADIFAMPAR--TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDP 345 (394)
T ss_dssp HHCSEEEECCC--CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCH
T ss_pred HhCCEEEecCc--cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCH
Confidence 99999999999 7 99999999999999999999999999999998 999999988 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 242 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
+.++++++++++.+.++|+|+.+++++.++|+++..+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 346 IRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCc
Confidence 99999999999999989999999999999999877553
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=2.9e-37 Score=267.79 Aligned_cols=249 Identities=17% Similarity=0.149 Sum_probs=215.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.++++|....+. ....++.+..++.+||||+|.+.+.+...+..+...+..+++++|++++ ++|+++|
T Consensus 184 ~~~~~ad~ii~~S~~~~~~----~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G 258 (439)
T 3fro_A 184 TGGYIADIVTTVSRGYLID----EWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIG 258 (439)
T ss_dssp HHHHHCSEEEESCHHHHHH----THHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEEC
T ss_pred hhhhhccEEEecCHHHHHH----HhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEc
Confidence 4456799999999988776 3334567889999999999999887653222233346889999999877 9999999
Q ss_pred ccc-ccccHHHHHHHHHHHHHHHHhhccCC--CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHH
Q 023290 92 SVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAP 166 (284)
Q Consensus 92 ~~~-~~k~~~~~~~a~~~l~~~~~~~~~~~--~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~ 166 (284)
++. +.||++.+++|+..+.. +. ++++|+++|.++. .+.+.+++++++++ +.+.+.|++ +++..
T Consensus 259 ~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~ 326 (439)
T 3fro_A 259 RFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGWARSLEEKHG--NVKVITEMLSREFVRE 326 (439)
T ss_dssp CSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHHHHHHHHHCT--TEEEECSCCCHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHHHHHHHhhcC--CEEEEcCCCCHHHHHH
Confidence 999 99999999999998865 33 6899999998762 24588999999988 678889954 78999
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHH
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRL 245 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~ 245 (284)
+|+.||++++||. .|++|++++|||+||+|||+++.++..+++.++ +|++++++| +++++++|.++++ +++.++
T Consensus 327 ~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d--~~~la~~i~~ll~~~~~~~~ 401 (439)
T 3fro_A 327 LYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGD--PGELANAILKALELSRSDLS 401 (439)
T ss_dssp HHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTC--HHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCC--HHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999 899999999999999999999999999999877 999999998 9999999999999 999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCC
Q 023290 246 TMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSHL 283 (284)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (284)
++++++++.+ ++|+|+.+++++.++|+++++++.+.|
T Consensus 402 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (439)
T 3fro_A 402 KFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRAFDFI 438 (439)
T ss_dssp HHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCBCSSB
T ss_pred HHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999 679999999999999999998876654
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=6.7e-37 Score=263.91 Aligned_cols=240 Identities=17% Similarity=0.187 Sum_probs=208.3
Q ss_pred cccccCCcc--cccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCC--CCe
Q 023290 10 YVKHLPLVA--GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN--EDL 85 (284)
Q Consensus 10 ~~~~~~~~~--~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~ 85 (284)
....++.++ .+++.|....+.+.+ +|. ..++.++|||+|.+.+. ..++++++++ +.+
T Consensus 125 ~~~~~~~~~~~~ii~~S~~~~~~~~~-----~~~-~~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~ 185 (413)
T 3oy2_A 125 LWWIFSHPKVVGVMAMSKCWISDICN-----YGC-KVPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDV 185 (413)
T ss_dssp GGGGGGCTTEEEEEESSTHHHHHHHH-----TTC-CSCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSE
T ss_pred HHHHHhccCCceEEEcCHHHHHHHHH-----cCC-CCceEEeCCCCCHHHHH-------------HHHHhcCCCcccCce
Confidence 356677777 999999999887554 455 67899999999998761 2356778777 789
Q ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC-hHHHHHHHHHHHHcCCCCc-------EEE
Q 023290 86 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDR-------VHF 157 (284)
Q Consensus 86 ~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~-~~~~~~l~~~~~~~~~~~~-------v~~ 157 (284)
+|+++|++.+.||++.+++|+..+.+ +.++++|+|+|.++... ....+.++++++++++.++ +.+
T Consensus 186 ~il~vGr~~~~Kg~~~li~a~~~l~~-------~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~ 258 (413)
T 3oy2_A 186 LFLNMNRNTARKRLDIYVLAAARFIS-------KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMIN 258 (413)
T ss_dssp EEECCSCSSGGGTHHHHHHHHHHHHH-------HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEE
T ss_pred EEEEcCCCchhcCcHHHHHHHHHHHH-------hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeec
Confidence 99999999999999999999999866 33899999999986432 1235888999999999887 778
Q ss_pred eccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCc---------------ee--
Q 023290 158 VNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTT---------------GL-- 218 (284)
Q Consensus 158 ~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~---------------g~-- 218 (284)
.|++ +++..+|+.||++++||. .|+||++++|||+||+|||+++.++..|++.++.+ |+
T Consensus 259 ~g~~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~g 336 (413)
T 3oy2_A 259 RTVLTDERVDMMYNACDVIVNCSS--GEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGG 336 (413)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCC
T ss_pred cCcCCHHHHHHHHHhCCEEEeCCC--cCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcce
Confidence 8986 589999999999999999 89999999999999999999999999999998887 99
Q ss_pred eecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 219 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
+++++| +++++++| ++++|++.++++++++++.+.++|+|+.+++++.++|++++++..
T Consensus 337 l~~~~d--~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 395 (413)
T 3oy2_A 337 IEGIID--VDDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVES 395 (413)
T ss_dssp EEEECC--HHHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC---
T ss_pred eeCCCC--HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcC
Confidence 999988 99999999 999999999999999999998899999999999999999987643
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5.8e-37 Score=270.57 Aligned_cols=251 Identities=17% Similarity=0.201 Sum_probs=213.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHH--hc-c----cCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC-----
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG----- 79 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~--~~-~----~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~----- 79 (284)
..++.+|.++++|....+. +.+. +| + +..++.|||||+|.+.+.+.... ..+..+|+++|
T Consensus 186 ~~~~~ad~vi~~S~~~~~~----~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~----~~~~~~r~~~~~~~~~ 257 (499)
T 2r60_A 186 LTMSYADKIIVSTSQERFG----QYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGD----KIKAKITKYLERDLGS 257 (499)
T ss_dssp HHHHHCSEEEESSHHHHHH----TTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCH----HHHHHHHHHHHHHSCG
T ss_pred HHHhcCCEEEECCHHHHHH----HHhhhcccccccccCCCCeEEECCCcChhhcCccchh----hhHHHHHHHhcccccc
Confidence 4557899999999988776 3334 45 5 66789999999998877654321 11366788888
Q ss_pred CCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC----------ChHHHHHHHHHHHHc
Q 023290 80 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----------QTKFESELRNYVMQK 149 (284)
Q Consensus 80 ~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~----------~~~~~~~l~~~~~~~ 149 (284)
++++.++|+++|++.+.||++.+++|+..+.+..+ ..++++|+|+.... ...+.+.++++++++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~------~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~ 331 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQD------KANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNN 331 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHH------HCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCC------CceEEEEECCCCCcccccccccccchHHHHHHHHHHHhc
Confidence 77788899999999999999999999998865432 34689999982211 112378899999999
Q ss_pred CCCCcEEEeccc--cCHHHHHhhc----cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCC
Q 023290 150 KIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 150 ~~~~~v~~~~~~--~~~~~~~~~a----d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~ 223 (284)
++.++|.|+|++ +++..+|+.| |++++||. .||||++++|||+||+|||+++.++..|++.++.+|++++++
T Consensus 332 ~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~ 409 (499)
T 2r60_A 332 DCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPE 409 (499)
T ss_dssp TCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTT
T ss_pred CCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCC
Confidence 999999999997 7899999999 99999999 899999999999999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 224 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
| +++++++|.++++|++.++++++++++.+.++|+|+.+++++.++|++++++++
T Consensus 410 d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~ 464 (499)
T 2r60_A 410 D--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKD 464 (499)
T ss_dssp C--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC--
T ss_pred C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 8 999999999999999999999999999999889999999999999999987653
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.5e-36 Score=258.09 Aligned_cols=237 Identities=17% Similarity=0.198 Sum_probs=208.1
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
.+|.++++|....+.+.+ .+|.+..++.++|||+|.+.+.+..... .+..+++++|++++.++++++|++.+
T Consensus 136 ~~d~ii~~s~~~~~~~~~----~~~~~~~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~ 207 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQK----HYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFG 207 (374)
T ss_dssp CCCEEEESCHHHHHHHHH----HHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTT
T ss_pred CCcEEEEcCHHHHHHHHH----HhCCChhheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchh
Confidence 689999999988887544 4788888999999999998776543221 14678899999988999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEE
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLV 175 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~ 175 (284)
.||++.+++++..+.+... ++++|+++|.+. .+.++++++++++.++|.++|+.+++..+|+.||+++
T Consensus 208 ~K~~~~li~a~~~l~~~~~------~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 275 (374)
T 2iw1_A 208 RKGVDRSIEALASLPESLR------HNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLL 275 (374)
T ss_dssp TTTHHHHHHHHHTSCHHHH------HTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEE
T ss_pred hcCHHHHHHHHHHhHhccC------CceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEE
Confidence 9999999999988755321 689999999974 2578888999999899999999999999999999999
Q ss_pred EcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeec-CCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023290 176 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 176 ~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~-~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
+||. .|++|++++|||++|+|||+++.++..+++.++.+|++++ ++| +++++++|.++++|++.++++++++++.
T Consensus 276 ~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 351 (374)
T 2iw1_A 276 HPAY--QEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHY 351 (374)
T ss_dssp ECCS--CCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eccc--cCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 9998 8999999999999999999999999999999999999998 777 9999999999999999999999999998
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHH
Q 023290 255 VKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+.+ ++|+.+.+++.++++..+.
T Consensus 352 ~~~-~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 352 ADT-QDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp HHH-SCCSCHHHHHHHHHHCC--
T ss_pred HHH-hhHHHHHHHHHHHHHHhhc
Confidence 874 7999999999999987654
No 8
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=5.2e-36 Score=258.61 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=200.8
Q ss_pred cCCccccc-ccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecc
Q 023290 14 LPLVAGAM-IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 92 (284)
Q Consensus 14 ~~~~~~~i-~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~ 92 (284)
+..++.++ ++|....+. ++..++.+||||+|...+...+... ..+..++++++++++.++++++|+
T Consensus 173 ~~~~~~~i~~~s~~~~~~----------~~~~~~~vi~ngvd~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~i~~vGr 239 (416)
T 2x6q_A 173 VEKYDRYIFHLPEYVQPE----------LDRNKAVIMPPSIDPLSEKNVELKQ---TEILRILERFDVDPEKPIITQVSR 239 (416)
T ss_dssp HTTSSEEEESSGGGSCTT----------SCTTTEEECCCCBCTTSTTTSCCCH---HHHHHHHHHTTCCTTSCEEEEECC
T ss_pred HHhCCEEEEechHHHHhh----------CCccceEEeCCCCChhhhcccccCh---hhHHHHHHHhCCCCCCcEEEEEec
Confidence 44566655 555544332 4447899999999986554321111 114678899999988999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc-----CHHHH
Q 023290 93 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPY 167 (284)
Q Consensus 93 ~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~-----~~~~~ 167 (284)
+.+.||++.+++|+..+.+ +.++++|+|+|.++...++..+.++++++++++.++|.|+|+.. ++..+
T Consensus 240 l~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~ 312 (416)
T 2x6q_A 240 FDPWKGIFDVIEIYRKVKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAF 312 (416)
T ss_dssp CCTTSCHHHHHHHHHHHHH-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHH-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHH
Confidence 9999999999999998866 33799999999987544446778899999999989999999653 79999
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHH
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 247 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~ 247 (284)
|+.||++++||. .||||++++|||+||+|||+++.++..+++.++.+|++++ | +++++++|..+++|++.++++
T Consensus 313 ~~~ad~~v~ps~--~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~ 386 (416)
T 2x6q_A 313 QRASDVILQMSI--REGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEM 386 (416)
T ss_dssp HHHCSEEEECCS--SCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhCCEEEECCC--cCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999998 5 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 248 GKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
++++++.+.++|+|+.+++++.++|++++
T Consensus 387 ~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 387 GAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 99999999889999999999999998765
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=8e-36 Score=262.36 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=203.8
Q ss_pred ccCCcccccccchhhHHHHHHH-H----HHHhcccCCCeEEEecCCccccchhhhhh-----------hHHHHHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR-T----RERLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRE 76 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~-~----~~~~~~~~~~i~vi~~g~~~~~~~~~~~~-----------~~~~~~~~~~r~ 76 (284)
.++.+|.++++|....+.+.+. + ...++.+..++.+||||+|.+.+.+.... ..+...+..+++
T Consensus 203 ~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 1rzu_A 203 GLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282 (485)
T ss_dssp HHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHH
T ss_pred HHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHH
Confidence 3467999999999988875432 0 00112456789999999998877654321 011222477899
Q ss_pred HhCCCCC-CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE
Q 023290 77 SLGVRNE-DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 155 (284)
Q Consensus 77 ~~~~~~~-~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 155 (284)
++|++++ .++|+++|++.+.||++.+++|+..+.+ ++++|+|+|.++. .+.+.+++++++++ ++|
T Consensus 283 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v 348 (485)
T 1rzu_A 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRV 348 (485)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTE
T ss_pred hcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcE
Confidence 9999875 6789999999999999999999998865 6899999998742 25788888888875 678
Q ss_pred E-Eeccc-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC---------CceeeecCCC
Q 023290 156 H-FVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGK 224 (284)
Q Consensus 156 ~-~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~---------~~g~~~~~~d 224 (284)
. +.|.. +++..+|+.||++++||. +|+||++++|||+||+|||+++.++..|++.++ .+|++++++|
T Consensus 349 ~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d 426 (485)
T 1rzu_A 349 GVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT 426 (485)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS
T ss_pred EEecCCCHHHHHHHHhcCCEEEECcc--cCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC
Confidence 7 78887 445899999999999999 899999999999999999999999999999998 8999999988
Q ss_pred CChHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcC
Q 023290 225 EGITPLAKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 281 (284)
Q Consensus 225 ~~~~~~~~~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (284)
+++++++|.+++ +|++.++++++++++ +.|+|+.+++++.++|++++.+.+.
T Consensus 427 --~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 427 --LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999 799999999998874 6899999999999999999876543
No 10
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=2.7e-35 Score=259.00 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=202.0
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhcc--------cC--CCeEEEecCCccccchhhhhh-----------hHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLRI--------KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLR 71 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~~--------~~--~~i~vi~~g~~~~~~~~~~~~-----------~~~~~~~ 71 (284)
.++.+|.++++|....+.+.+. .+|. +. .++.+||||+|.+.+.+.... ..+...+
T Consensus 201 ~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (485)
T 2qzs_A 201 GLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENK 277 (485)
T ss_dssp HHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHH
T ss_pred HHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhH
Confidence 3467999999999888775431 0232 22 789999999998877654321 1112235
Q ss_pred HHHHHHhCCCC--CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc
Q 023290 72 EHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 149 (284)
Q Consensus 72 ~~~r~~~~~~~--~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 149 (284)
..+++++|+++ +.++|+++|++.+.||++.+++|+..+.+ ++++|+|+|.++. .+.+.++++++++
T Consensus 278 ~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~ 345 (485)
T 2qzs_A 278 RQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEY 345 (485)
T ss_dssp HHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHS
T ss_pred HHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhC
Confidence 77899999986 67899999999999999999999998865 6899999998742 2678888888887
Q ss_pred CCCCcEE-Eeccc-cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC---------Ccee
Q 023290 150 KIQDRVH-FVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGL 218 (284)
Q Consensus 150 ~~~~~v~-~~~~~-~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~---------~~g~ 218 (284)
+ ++|. +.|.. +++..+|+.||++++||. +|+||++++|||+||+|||+++.+++.|++.++ .+|+
T Consensus 346 ~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~ 421 (485)
T 2qzs_A 346 P--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGF 421 (485)
T ss_dssp T--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBE
T ss_pred C--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceE
Confidence 5 6786 88886 445899999999999999 899999999999999999999999999999998 8999
Q ss_pred eecCCCCChHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 219 LHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
+++++| +++++++|.+++ +|++.++++++++++ +.|+|+.+++++.++|++++.++.
T Consensus 422 l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 422 VFEDSN--AWSLLRAIRRAFVLWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp EECSSS--HHHHHHHHHHHHHHHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHC----
T ss_pred EECCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 999998 999999999999 799999999998874 689999999999999999877654
No 11
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=6.8e-35 Score=257.67 Aligned_cols=239 Identities=20% Similarity=0.222 Sum_probs=191.4
Q ss_pred ccCCcccccccchhhHHHHHHHHHHHhc--------ccCCCeEEEecCCccccchhhhh------------hhHHHHHHH
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNRTRERLR--------IKMPDTYVVHLGNSKELMEVAED------------NVAKRVLRE 72 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~~~~~~~--------~~~~~i~vi~~g~~~~~~~~~~~------------~~~~~~~~~ 72 (284)
.+..+|.++++|...++.+. +.++ ....++.+|+||+|.+.+.+..+ ...+...+.
T Consensus 238 ~i~~ad~v~tVS~~~a~ei~----~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~ 313 (536)
T 3vue_A 238 GILEADRVLTVSPYYAEELI----SGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKE 313 (536)
T ss_dssp HHHHCSEEEESCHHHHHHHH----TTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHH
T ss_pred HHHhccEEEEcCHHHhhhhh----cccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHH
Confidence 34568999999998877643 3232 23568999999999998876432 123445567
Q ss_pred HHHHHhCCC--CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcC
Q 023290 73 HVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 150 (284)
Q Consensus 73 ~~r~~~~~~--~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 150 (284)
.+++.+|++ ++.++|+++||+.++||++.+++|+.++.+ .+.+++++|.|.. .....++.....+
T Consensus 314 ~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~- 380 (536)
T 3vue_A 314 ALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKY- 380 (536)
T ss_dssp HHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHS-
T ss_pred HHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhc-
Confidence 888888885 456899999999999999999999998854 6789999998753 2445555555554
Q ss_pred CCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCcee----------
Q 023290 151 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL---------- 218 (284)
Q Consensus 151 ~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~---------- 218 (284)
.+++.+.+.. +++..+|+.||++++||. +|+||++++|||+||+|||+++.||..|+|.++.+|+
T Consensus 381 -~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~ 457 (536)
T 3vue_A 381 -PGKVRAVVKFNAPLAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCK 457 (536)
T ss_dssp -TTTEEEECSCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTT
T ss_pred -CCceEEEEeccHHHHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCcee
Confidence 4578887765 567889999999999999 9999999999999999999999999999999999998
Q ss_pred eecCCCCChHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 219 LHPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
++++.| +++++++|.++++ +.+.++++.+++ +.++|||+.++++|+++|+++.
T Consensus 458 l~~~~d--~~~la~ai~ral~~~~~~~~~~~~~~a---m~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 458 VVEPSD--VKKVAATLKRAIKVVGTPAYEEMVRNC---MNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp CCCHHH--HHHHHHHHHHHHHHTTSHHHHHHHHHH---HHSCCSSHHHHHHHHHHHHTTC
T ss_pred EECCCC--HHHHHHHHHHHHHhcCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhh
Confidence 566666 8999999988776 445567777665 3478999999999999999863
No 12
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1e-34 Score=264.67 Aligned_cols=252 Identities=15% Similarity=0.214 Sum_probs=202.4
Q ss_pred ccCCcccccccchhhHHHHHHH---HHHHh--------------cccCCCeEEEecCCccccchhhhhhhHH-HHH----
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR---TRERL--------------RIKMPDTYVVHLGNSKELMEVAEDNVAK-RVL---- 70 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~---~~~~~--------------~~~~~~i~vi~~g~~~~~~~~~~~~~~~-~~~---- 70 (284)
.+..+|.++++|....+.+.+. +.... +...+++.|||||+|.+.|.+....... ...
T Consensus 471 ~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i 550 (816)
T 3s28_A 471 AMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEI 550 (816)
T ss_dssp HHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHH
T ss_pred HHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccc
Confidence 5678999999998877631110 00000 1223489999999999887654322110 000
Q ss_pred ------HHHHHHHhCC--CCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCC------CCh
Q 023290 71 ------REHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN------AQT 136 (284)
Q Consensus 71 ------~~~~r~~~~~--~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~------~~~ 136 (284)
....++.+|+ ++++++|+++|++.+.||++.+++|+..+.+.. ++++|+|+|+++. ...
T Consensus 551 ~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~-------~~v~LvIvG~g~~~~~~~~e~~ 623 (816)
T 3s28_A 551 EELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLR-------ELANLVVVGGDRRKESKDNEEK 623 (816)
T ss_dssp HHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHH-------HHCEEEEECCCTTSCCCCHHHH
T ss_pred cccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhC-------CCeEEEEEeCCCcccccchhhH
Confidence 0112345565 667889999999999999999999999986532 7899999999862 112
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeccc------cCHHHHHh-hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcce
Q 023290 137 KFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 209 (284)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~v~~~~~~------~~~~~~~~-~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e 209 (284)
.+.+.++++++++++.++|.|+|++ +++..+|+ .||++++||. .|+||++++|||+||+|||+|+.++..+
T Consensus 624 ~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~E 701 (816)
T 3s28_A 624 AEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAE 701 (816)
T ss_dssp HHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHH
T ss_pred HHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHH
Confidence 2678899999999999999999954 45778887 6899999999 8999999999999999999999999999
Q ss_pred eeecCCceeeecCCCCChHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 023290 210 IVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 275 (284)
Q Consensus 210 ~v~~~~~g~~~~~~d~~~~~~~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (284)
++.++.+|++++++| +++++++|.+++ .|++.++++++++++.+.++|+|+.+++++.++|+.+
T Consensus 702 iV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 702 IIVHGKSGFHIDPYH--GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp HCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999998 999999997776 8999999999999999988999999999999999865
No 13
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.3e-33 Score=242.63 Aligned_cols=230 Identities=19% Similarity=0.226 Sum_probs=197.6
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|....+.+.+. .+.+++ ++|||+|.+.+...... .+++++.++++++|
T Consensus 156 ~~~~~~d~ii~~s~~~~~~~~~~------~~~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G 215 (406)
T 2gek_A 156 PYHEKIIGRIAVSDLARRWQMEA------LGSDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLG 215 (406)
T ss_dssp HHHTTCSEEEESSHHHHHHHHHH------HSSCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEES
T ss_pred HHHhhCCEEEECCHHHHHHHHHh------cCCCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEe
Confidence 45688999999999988886553 345678 99999998766543211 12333567899999
Q ss_pred cc-cccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 92 SV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 92 ~~-~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
++ .+.||++.+++++..+.+ +.++++|+++|.+. . +.+++.++++ .++|.++|++ +++..+|
T Consensus 216 ~~~~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~~~-----~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~ 280 (406)
T 2gek_A 216 RYDEPRKGMAVLLAALPKLVA-------RFPDVEILIVGRGD-----E-DELREQAGDL--AGHLRFLGQVDDATKASAM 280 (406)
T ss_dssp CTTSGGGCHHHHHHHHHHHHT-------TSTTCEEEEESCSC-----H-HHHHHHTGGG--GGGEEECCSCCHHHHHHHH
T ss_pred eeCccccCHHHHHHHHHHHHH-------HCCCeEEEEEcCCc-----H-HHHHHHHHhc--cCcEEEEecCCHHHHHHHH
Confidence 99 999999999999998865 44799999999986 4 6777777766 5799999997 5679999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
+.||++++||. +.|++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++++++.+.+++
T Consensus 281 ~~adv~v~ps~-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~ 357 (406)
T 2gek_A 281 RSADVYCAPHL-GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYV 357 (406)
T ss_dssp HHSSEEEECCC-SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHCCEEEecCC-CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999984 28999999999999999999999999999999999999999988 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
+++++.+. .|+|+.+++++.++|++++++..
T Consensus 358 ~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 358 ARASERVH-RYDWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHGG-GGBHHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999998 89999999999999999987653
No 14
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.98 E-value=1.8e-31 Score=207.53 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=161.9
Q ss_pred EecCCccccch--hhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc-ccccHHHHHHHHHHHH--HHHHhhccCCCCe
Q 023290 49 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 123 (284)
Q Consensus 49 i~~g~~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~-~~k~~~~~~~a~~~l~--~~~~~~~~~~~~~ 123 (284)
||||+|.+.+. +.... ....+..+|+++|++++ .+|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~~--~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGS--RDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCSC--HHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhccccccccc--hhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999887 54310 01113678999999754 5888999999 9999999999998875 3 23789
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEE-ecccc--CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~-~~~~~--~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
+|+++|.+.+ ...+.+++.+++++ +|.+ +|+++ ++..+|+.||++++||. .|++|++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999998642 25678888888876 8999 99984 89999999999999999 8999999999999999999
Q ss_pred EcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcC
Q 023290 201 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 201 ~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~ 260 (284)
+++.++..+++ ++.+|++++++| +++++++|.++++ |++.++++++++++.+.+ ||
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 999999999988 9999999999999 999999999999999887 75
No 15
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.98 E-value=5.5e-32 Score=227.56 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=179.0
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG 96 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~ 96 (284)
+|.++++|....+.+.+ ..++.+||||+|.+.+.+... . .++..+++++|++.+.
T Consensus 120 ~d~ii~~S~~~~~~~~~---------~~~~~vi~ngvd~~~~~~~~~---------------~-~~~~~~i~~vG~~~~~ 174 (342)
T 2iuy_A 120 PVGCTYSSRAQRAHCGG---------GDDAPVIPIPVDPARYRSAAD---------------Q-VAKEDFLLFMGRVSPH 174 (342)
T ss_dssp CTTEEESCHHHHHHTTC---------CTTSCBCCCCBCGGGSCCSTT---------------C-CCCCSCEEEESCCCGG
T ss_pred ceEEEEcCHHHHHHHhc---------CCceEEEcCCCChhhcCcccc---------------c-CCCCCEEEEEeccccc
Confidence 89999999988776432 578999999999887765432 1 1245578899999999
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEE
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 174 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~ 174 (284)
||++.+++++..+ +++|+++|.++ ..+.+++++++++ ++|.|+|++ +++..+|+.||++
T Consensus 175 Kg~~~li~a~~~~------------~~~l~i~G~g~-----~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~ 235 (342)
T 2iuy_A 175 KGALEAAAFAHAC------------GRRLVLAGPAW-----EPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAV 235 (342)
T ss_dssp GTHHHHHHHHHHH------------TCCEEEESCCC-----CHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEE
T ss_pred cCHHHHHHHHHhc------------CcEEEEEeCcc-----cHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEE
Confidence 9999999999763 57899999986 5677888888877 699999998 4679999999999
Q ss_pred EEcCCC--------CcCccchhHHHHHhcCCCEEEcCCCCcceeeec--CCceeeecCCCCChHHHHHHHHHHhhCHHHH
Q 023290 175 VQNSQA--------WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIVKLATHVERR 244 (284)
Q Consensus 175 ~~ps~~--------~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~--~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~ 244 (284)
++||.. |.|+||++++|||++|+|||+++.++..|++.+ +.+|+++++ | +++++++|.++++
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~----- 307 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA----- 307 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC-----
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH-----
Confidence 999971 369999999999999999999999999999999 899999999 8 9999999999987
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 245 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
++++++.+.++|+|+.+++++.++|+++++++
T Consensus 308 ---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 308 ---SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp ---HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 56778888889999999999999999998764
No 16
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.97 E-value=2.2e-29 Score=189.97 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=138.0
Q ss_pred CeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--
Q 023290 84 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 161 (284)
Q Consensus 84 ~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-- 161 (284)
+++|+++|++.+.||++.+++++..+. +.++++|+++|.++ ..+.+++.++++++ ++.+ |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKGP-----DEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCST-----THHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCCc-----cHHHHHHHHHHcCC--eEEE-eecCH
Confidence 478999999999999999999998863 22799999999876 56888999999887 7888 885
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCC-CEEE-cCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~-Pvi~-~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+++..+|+.||++++||. .|+||++++|||++|+ |||+ ++.++..+++.++ +.+++++| +++++++|.++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVIANSPLSATRQFALDE--RSLFEPNN--AKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG--GGEECTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC--ceEEcCCC--HHHHHHHHHHHHh
Confidence 789999999999999999 8999999999999998 9999 5688899998765 44788887 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 023290 240 HVERRLTMGKRGYERVKEIFQEHHMAER 267 (284)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
+++.++++++++++.+ ++|+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 140 NKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHC-------
T ss_pred CHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999999988 67999998763
No 17
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.96 E-value=2.7e-28 Score=212.28 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=169.6
Q ss_pred CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCe
Q 023290 44 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 123 (284)
Q Consensus 44 ~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~ 123 (284)
.++.++|||+|.+.|........... ...+|++++ ++.+|+++||+.+.||++.+++|+.++.+..++. ..++
T Consensus 219 ~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~---~~~v 291 (482)
T 1uqt_A 219 FRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH---HGKI 291 (482)
T ss_dssp EEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGG---TTTE
T ss_pred EEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccc---cCcE
Confidence 57899999999987765322111111 356788886 5678899999999999999999999987754331 1358
Q ss_pred EEEEEecCCCCChH----HHHHHHHHHHHcC----CC--CcEEEe-ccc--cCHHHHHhhccEEEEcCCCCcCccchhHH
Q 023290 124 HAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHFV-NKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 190 (284)
Q Consensus 124 ~l~i~G~~~~~~~~----~~~~l~~~~~~~~----~~--~~v~~~-~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~ 190 (284)
+|+++|.+...+.+ ..+.+++++.+.+ .. ..|.++ |.+ +++..+|+.||++++||. .||||++++
T Consensus 292 ~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~l 369 (482)
T 1uqt_A 292 RYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVAK 369 (482)
T ss_dssp EEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHHH
T ss_pred EEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchHH
Confidence 89999974332222 3445555555432 21 136654 543 789999999999999999 999999999
Q ss_pred HHHhcCC-----CEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 023290 191 EAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 264 (284)
Q Consensus 191 Eama~G~-----Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (284)
||||||+ |+|+|+.+|..+.+ + +|+++++.| +++++++|.++++ ++++++++.+++++.+.+ |+|+.+
T Consensus 370 EAmA~g~~~~~gpvV~S~~~G~~~~l-~--~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~~ 443 (482)
T 1uqt_A 370 EYVAAQDPANPGVLVLSQFAGAANEL-T--SALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINHW 443 (482)
T ss_dssp HHHHHSCTTSCCEEEEETTBGGGGTC-T--TSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH-TCHHHH
T ss_pred HHHHhCCCCCCCCEEEECCCCCHHHh-C--CeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHH
Confidence 9999997 89999988877777 2 799999998 9999999999998 577889999999998865 999999
Q ss_pred HHHHHHHHHHH
Q 023290 265 AERIAVVLKEV 275 (284)
Q Consensus 265 ~~~~~~~~~~~ 275 (284)
++++++.|+++
T Consensus 444 a~~~l~~l~~~ 454 (482)
T 1uqt_A 444 QECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 18
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.96 E-value=1.4e-28 Score=215.93 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=183.6
Q ss_pred cCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhh-hHHHHHHHHH----HHH----hCCC-CC
Q 023290 14 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-VAKRVLREHV----RES----LGVR-NE 83 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~-~~~~~~~~~~----r~~----~~~~-~~ 83 (284)
+..+|.++++|..+++.++. .++.+.+.+ |+||+|.+.+.+.... ..+...+..+ +.. ++++ ++
T Consensus 258 a~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk 331 (725)
T 3nb0_A 258 AHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDN 331 (725)
T ss_dssp HHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGG
T ss_pred HHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCc
Confidence 44899999999999887554 355655544 9999999988774221 1122223333 222 2454 44
Q ss_pred CeEEEEecccc-ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCCh--------------------------
Q 023290 84 DLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-------------------------- 136 (284)
Q Consensus 84 ~~~i~~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~-------------------------- 136 (284)
.+++..+||+. ..||++.+++|+.++...++..+.+..-+.|+++..+.....
T Consensus 332 ~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 411 (725)
T 3nb0_A 332 TLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGK 411 (725)
T ss_dssp EEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhH
Confidence 56676789999 689999999999999988776543445567777765422210
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHHcCCCCc----
Q 023290 137 ----------------------------------------------------------KFESELRNYVMQKKIQDR---- 154 (284)
Q Consensus 137 ----------------------------------------------------------~~~~~l~~~~~~~~~~~~---- 154 (284)
...+.+...++++++.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~dr 491 (725)
T 3nb0_A 412 RIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDR 491 (725)
T ss_dssp HHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCS
T ss_pred HHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCc
Confidence 011223334455555443
Q ss_pred --EEEecc-c--------cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecC-------Cc
Q 023290 155 --VHFVNK-T--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------TT 216 (284)
Q Consensus 155 --v~~~~~-~--------~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~-------~~ 216 (284)
|.|++. . .++..+|+.||++++||. +|+||++++||||||+|||+++.+|..+++.++ .+
T Consensus 492 VKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~t 569 (725)
T 3nb0_A 492 VKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDY 569 (725)
T ss_dssp EEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHT
T ss_pred eeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCc
Confidence 555543 2 368999999999999998 999999999999999999999999999998775 36
Q ss_pred eeeecCCC-CChHHHHHHHHHHh----h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 217 GLLHPVGK-EGITPLAKNIVKLA----T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 217 g~~~~~~d-~~~~~~~~~i~~l~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
|+++.+.+ .++++++++|.+++ . ++..+..++.++++.+ +.|+|+.+++++.++|+.++.+..
T Consensus 570 G~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~~ 638 (725)
T 3nb0_A 570 GIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRGY 638 (725)
T ss_dssp TEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhcc
Confidence 98885421 22666665555554 3 6788889998887766 579999999999999999987654
No 19
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=1.5e-30 Score=223.55 Aligned_cols=209 Identities=11% Similarity=0.085 Sum_probs=160.0
Q ss_pred cccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccc-cccc
Q 023290 19 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGK 97 (284)
Q Consensus 19 ~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~-~~~k 97 (284)
.++++|....+.+++ .|.+.+++.+++||+|.+.+.... .+ .++...++++|++ .+.|
T Consensus 197 ~vi~~S~~~~~~l~~-----~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~K 255 (413)
T 2x0d_A 197 IAVFNSELLKQYFNN-----KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRN 255 (413)
T ss_dssp EEEEESHHHHHHHHH-----HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGG
T ss_pred EEEEcCHHHHHHHHH-----cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhcc
Confidence 478889888887554 356656789999999876443210 11 2344567788996 6889
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCC---CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhcc
Q 023290 98 GQDLFLHSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 172 (284)
Q Consensus 98 ~~~~~~~a~~~l~~~~~~~~~~~~---~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad 172 (284)
|++.+++|+..+.+. .+ +++|+++|++... .++++.++|.|+|.+ +++..+|+.||
T Consensus 256 g~~~li~A~~~l~~~-------~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~ad 316 (413)
T 2x0d_A 256 AFTLIVEALKIFVQK-------YDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSS 316 (413)
T ss_dssp CHHHHHHHHHHHHHH-------CTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh-------CCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCC
Confidence 999999999988653 24 4899999987532 245667799999986 79999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 252 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 252 (284)
++++||. .|+||++++||||||+|||+++ +|..+++.++.+|++++++| +++++++|.++++|++.+++ +++
T Consensus 317 v~v~pS~--~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~---~~~ 388 (413)
T 2x0d_A 317 IGISLMI--SPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV---DKK 388 (413)
T ss_dssp EEECCCS--SSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC----------
T ss_pred EEEEecC--CCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---hHH
Confidence 9999998 8999999999999999999954 56789999999999999998 99999999999998887766 455
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 253 ERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+.+ +.|+|+...++ .++|++++.
T Consensus 389 ~~~-~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 389 ESS-NMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp CCB-SCGGGCCCC----TTHHHHHT
T ss_pred HHH-HhCCHHHHHHH-HHHHHHHHh
Confidence 555 46999999887 677777654
No 20
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=8.2e-29 Score=221.77 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=180.6
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
.+|.++++|.....+ .+++.+|||.+.+........ +...|+++|++++.+++ ++|++.+
T Consensus 328 ~~d~~i~~s~~~~~~------------~~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~ 387 (568)
T 2vsy_A 328 LGDAFALPPALEPFY------------SEHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY 387 (568)
T ss_dssp EECTTTSCTTTGGGC------------SSEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG
T ss_pred EECCCcCCcccccCC------------cceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc
Confidence 467888888765432 267999999654432111101 12246778887766654 8999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEe-cCCCCChHHHHHHHHHHHHcCCC-CcEEEeccc--cCHHHHHhhc
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G-~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~--~~~~~~~~~a 171 (284)
||++.+++++..+.+ +.|+++|+|+| +++ ..+.+++.++++++. ++|.|+|++ +++..+|+.|
T Consensus 388 -K~~~~li~a~~~l~~-------~~~~~~l~i~G~~g~-----~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~a 454 (568)
T 2vsy_A 388 -KLNPQSMARMLAVLR-------EVPDSVLWLLSGPGE-----ADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHA 454 (568)
T ss_dssp -GCCHHHHHHHHHHHH-------HCTTCEEEEECCSTT-----HHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGC
T ss_pred -cCCHHHHHHHHHHHH-------hCCCcEEEEecCCHH-----HHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcC
Confidence 999999999999866 33899999999 554 788999999999998 899999998 4899999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEE-------cCCC-------CcceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLG-------TAAG-------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~-------~~~~-------~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
|++++||. + |+|++++|||+||+|||+ ++.+ +..+++.+ | +++++++|..+
T Consensus 455 dv~v~ps~--~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l 519 (568)
T 2vsy_A 455 DLFLDTHP--Y-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVAL 519 (568)
T ss_dssp SEEECCSS--S-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHH
T ss_pred CEEeeCCC--C-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHH
Confidence 99999998 7 999999999999999999 9998 88888744 4 99999999999
Q ss_pred hhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHhhc
Q 023290 238 ATHVERRLTMGKRGYERV--KEIFQEHHMAERIAVVLKEVLKKSK 280 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (284)
++|++.++++++++++.+ .+.|+|+.+++++.++|++++.+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~ 564 (568)
T 2vsy_A 520 ASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHG 564 (568)
T ss_dssp HHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 6789999999999999999987653
No 21
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.95 E-value=1e-26 Score=200.44 Aligned_cols=246 Identities=12% Similarity=0.036 Sum_probs=188.0
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHh-cccC-------------CCeEEEecCCccccchhhhhhhHHHHHHHHHHH
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERL-RIKM-------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 76 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~-~~~~-------------~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~ 76 (284)
.+.+-.+|.+.+.+...++.+.+.+.+.+ |... .++.++|+|+|++.+.+.... .+..+|+
T Consensus 202 l~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~ 276 (496)
T 3t5t_A 202 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEE 276 (496)
T ss_dssp HHHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHH
T ss_pred HHHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHH
Confidence 34555788899988888877776555555 4321 267899999999988754321 1255777
Q ss_pred HhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChH----HHHHHHHHHHHcC--
Q 023290 77 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQKK-- 150 (284)
Q Consensus 77 ~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~~~-- 150 (284)
+++ ++.+|+++||+.+.||+..+++|+ ++.+..++. .++.|+++|.+...+.+ +...+++++.+.+
T Consensus 277 ~~~---~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~----~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~ 348 (496)
T 3t5t_A 277 WAD---GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGL----EKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAE 348 (496)
T ss_dssp HHT---TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSC----TTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC---CceEEEEcccCccccCHHHHHHHH-HHHHhCccc----ceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccc
Confidence 777 577888999999999999999999 887643211 14678888864433322 3444555554432
Q ss_pred --CCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcC---CCEEEcCCCCcceeeecCCceeeecCC
Q 023290 151 --IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLGTAAGGTTEIVVNGTTGLLHPVG 223 (284)
Q Consensus 151 --~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G---~Pvi~~~~~~~~e~v~~~~~g~~~~~~ 223 (284)
.. .|.|++.. +++..+|+.||++++||. .||||++++|||||| .|+|+|..+|..+.+ +.+|++++|.
T Consensus 349 ~g~~-~V~f~g~v~~~el~aly~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~ 423 (496)
T 3t5t_A 349 LGSD-TVRIDNDNDVNHTIACFRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPF 423 (496)
T ss_dssp HCTT-SEEEEECCCHHHHHHHHHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTT
T ss_pred cCCc-CEEEeCCCCHHHHHHHHHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCC
Confidence 22 68898874 789999999999999999 999999999999996 899999988888877 3479999999
Q ss_pred CCChHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 224 KEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 224 d~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
| +++++++|.+++++ +++++++.++.++.+. .++....++.+++.+.....
T Consensus 424 D--~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~-~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 424 D--LVEQAEAISAALAAGPRQRAEAAARRRDAAR-PWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp B--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT-TCBHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHhhccc
Confidence 9 99999999999984 5788888899998886 59999999999998877644
No 22
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.95 E-value=6.3e-28 Score=183.89 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=132.5
Q ss_pred hCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHH--HcCCCCcE
Q 023290 78 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 155 (284)
Q Consensus 78 ~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~--~~~~~~~v 155 (284)
+.+++++++|+|+|++.+.||++.+++++..+ ++++|+++|.+.. .+.+++.++ .+++.++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~~-----~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFSK-----GDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCCT-----TSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCcc-----HHHHHHHHHhhhcccCCcE
Confidence 44567788899999999999999999999876 6889999998763 356777777 77888899
Q ss_pred EEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHH
Q 023290 156 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 233 (284)
Q Consensus 156 ~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~ 233 (284)
.++|++ +++..+|+.||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|+++ +.| +++++++
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d--~~~l~~~ 155 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NAD--VNEIIDA 155 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSC--HHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCC--HHHHHHH
Confidence 999998 459999999999999999 899999999999999999999999999999999999999 777 9999999
Q ss_pred HHHHhhCHHH-HHHHHHH
Q 023290 234 IVKLATHVER-RLTMGKR 250 (284)
Q Consensus 234 i~~l~~~~~~-~~~~~~~ 250 (284)
|.++++|++. ++++.++
T Consensus 156 i~~l~~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 156 MKKVSKNPDKFKKDCFRR 173 (177)
T ss_dssp HHHHHHCTTTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 9999998875 4444333
No 23
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.94 E-value=7.7e-28 Score=206.64 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=158.5
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.++++|....+.+.+ .+ ++.+||||+|.+.+.+.... . .++.++++|+
T Consensus 173 ~~~~~~ad~vi~~S~~~~~~~~~-----~~----~i~vipngvd~~~f~~~~~~--------------~-~~~~~~i~~v 228 (406)
T 2hy7_A 173 DRVAPTLDVIALVSPAMAAEVVS-----RD----NVFHVGHGVDHNLDQLGDPS--------------P-YAEGIHAVAV 228 (406)
T ss_dssp HHHGGGCSEEEESCGGGGGGCSC-----ST----TEEECCCCBCTTHHHHHCSC--------------S-CCSSEEEEEE
T ss_pred HHHHHhCCEEEEcCHHHHHHHHh-----cC----CEEEEcCCcChHhcCccccc--------------c-cCCCcEEEEE
Confidence 34567899999999998887443 12 89999999998876543210 0 1234789999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.+.||+ ++++ .+ ..++++|+|+|+|+ ++++++.++|.|+|.+ +++..+|
T Consensus 229 Grl~~~Kg~---~~~l---~~-------~~~~~~l~ivG~g~-------------~~~~~l~~~V~f~G~~~~~~l~~~~ 282 (406)
T 2hy7_A 229 GSMLFDPEF---FVVA---SK-------AFPQVTFHVIGSGM-------------GRHPGYGDNVIVYGEMKHAQTIGYI 282 (406)
T ss_dssp CCTTBCHHH---HHHH---HH-------HCTTEEEEEESCSS-------------CCCTTCCTTEEEECCCCHHHHHHHH
T ss_pred eccccccCH---HHHH---HH-------hCCCeEEEEEeCch-------------HHhcCCCCCEEEcCCCCHHHHHHHH
Confidence 999999998 3333 22 22899999999863 4556778899999997 6899999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHH-------hcCCCEEEcCCCCcceeeecCCceee-ecCCCCChHHHHHHHHHHhhC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAM-------AFQLPVLGTAAGGTTEIVVNGTTGLL-HPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eam-------a~G~Pvi~~~~~~~~e~v~~~~~g~~-~~~~d~~~~~~~~~i~~l~~~ 240 (284)
+.||++++||. .|+||++++||| |||+|||+|+. +.++.+|++ ++++| +++++++|.+++++
T Consensus 283 ~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 283 KHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGN--ADSVIAAITQALEA 352 (406)
T ss_dssp HTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTC--HHHHHHHHHHHHHC
T ss_pred HhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCC--HHHHHHHHHHHHhC
Confidence 99999999999 899999999999 99999999987 567889999 99998 99999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHH
Q 023290 241 VERRLTMGKRGYERVKEIFQEHHMAERIAVV--LKEVL 276 (284)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 276 (284)
++ + ...+.|+|+.+++++.++ |.++.
T Consensus 353 ~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 353 PR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp CC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred cc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 76 1 234679999999999999 76543
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.94 E-value=3.6e-27 Score=201.17 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=173.5
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC-CCC-CCeEEEEecc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINS 92 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~~g~ 92 (284)
+.+|.+++.|....+.+.+ +|++.+++.+++||+.................+..+++++| +++ +.++++++|+
T Consensus 140 ~~~d~ii~~s~~~~~~l~~-----~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr 214 (384)
T 1vgv_A 140 HLAMYHFSPTETSRQNLLR-----ENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHR 214 (384)
T ss_dssp TTCSEEEESSHHHHHHHHH-----TTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCC
T ss_pred hhccEEEcCcHHHHHHHHH-----cCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCC
Confidence 5589999999988776543 57777889999999532221111100000001235677788 744 4567889999
Q ss_pred cccc-ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHh
Q 023290 93 VSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 169 (284)
Q Consensus 93 ~~~~-k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 169 (284)
+.+. ||++.+++|+..+.+. .+++++++.++..+ ...+.+++.+. ..++|.|+|.. +++..+|+
T Consensus 215 ~~~~~kg~~~li~a~~~l~~~-------~~~~~l~i~~g~~~---~~~~~l~~~~~---~~~~v~~~g~~~~~~~~~~~~ 281 (384)
T 1vgv_A 215 RESFGRGFEEICHALADIATT-------HQDIQIVYPVHLNP---NVREPVNRILG---HVKNVILIDPQEYLPFVWLMN 281 (384)
T ss_dssp BSSCCHHHHHHHHHHHHHHHH-------CTTEEEEEECCBCH---HHHHHHHHHHT---TCTTEEEECCCCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhh-------CCCeEEEEEcCCCH---HHHHHHHHHhh---cCCCEEEeCCCCHHHHHHHHH
Confidence 9876 9999999999988652 37899888643211 24455555543 23589997653 68999999
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-CCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHH
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 248 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~ 248 (284)
.||++++|| |..++|||++|+|||+++. ++..++++++ +|+++++ | +++++++|.++++|++.+++|+
T Consensus 282 ~ad~~v~~S-------g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~ 350 (384)
T 1vgv_A 282 HAWLILTDS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMS 350 (384)
T ss_dssp HCSEEEESS-------STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred hCcEEEECC-------cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhh
Confidence 999999998 2348999999999999986 8889998887 9999987 5 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 023290 249 KRGYERVKEIFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
+++++.. +.++|+.+++.+.++++++.+.+
T Consensus 351 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 351 RAHNPYG-DGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp SSCCTTC-CSCHHHHHHHHHHHTCCCC----
T ss_pred hccCCCc-CCCHHHHHHHHHHHHHHhhcccc
Confidence 9887765 57999999999999887776644
No 25
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.93 E-value=1.2e-26 Score=197.28 Aligned_cols=220 Identities=15% Similarity=0.099 Sum_probs=166.2
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecC-CccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 94 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~ 94 (284)
.+|.+++.|....+.+.+ +|++.+++.+++|| +|...+...... +..+++++ +++.++++++|++.
T Consensus 150 ~~d~ii~~s~~~~~~~~~-----~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~ 216 (375)
T 3beo_A 150 MADLHFSPTAKSATNLQK-----ENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRRE 216 (375)
T ss_dssp HCSEEEESSHHHHHHHHH-----TTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGG
T ss_pred hhheeeCCCHHHHHHHHH-----cCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEecccc
Confidence 388999999988776543 57777889999999 776544322100 12234444 34566778999988
Q ss_pred cc-ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhc
Q 023290 95 RG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 95 ~~-k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~a 171 (284)
+. ||++.+++|+..+.+ +.+++++++ |.++. ....+.++++. +..++|.|+|.. .++..+|+.|
T Consensus 217 ~~~K~~~~li~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~a 283 (375)
T 3beo_A 217 NLGEPMRNMFRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARS 283 (375)
T ss_dssp GTTHHHHHHHHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhC
Confidence 75 999999999998865 237888655 54431 12233333332 333589997764 4899999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-CCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
|++++|| |.+++|||++|+|||+++. ++..+++.++ +|+++++ | +++++++|.++++|++.+++|+++
T Consensus 284 d~~v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~~~~~~~ 352 (375)
T 3beo_A 284 YLMLTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAHDKMSKA 352 (375)
T ss_dssp SEEEECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHCCC
T ss_pred cEEEECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhHhhhhhc
Confidence 9999987 4569999999999999964 8899999877 9999976 6 999999999999999999999998
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++.. +.|+|+.+++.+.++++
T Consensus 353 ~~~~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 353 SNPYG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp CCTTC-CSCHHHHHHHHHHHHTT
T ss_pred CCCCC-CCcHHHHHHHHHHHHhh
Confidence 88765 57999999998887763
No 26
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.93 E-value=3.2e-25 Score=187.75 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=156.6
Q ss_pred CeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCe-EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCe
Q 023290 45 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 123 (284)
Q Consensus 45 ~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~ 123 (284)
++.+++||++.+.+.... .+++++++++.. ++++.|++.+.|+.+.+++++..+. .++
T Consensus 155 ~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~----------~~~ 213 (364)
T 1f0k_A 155 NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLG----------DSV 213 (364)
T ss_dssp SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHG----------GGE
T ss_pred CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhc----------CCc
Confidence 688999999877654321 134566666655 5556679999999999999998762 257
Q ss_pred E-EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 124 H-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 124 ~-l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+ ++++|.+. .+.+++.++++++. +|.|+|+++++..+|+.||++++||. |++++|||++|+|||++
T Consensus 214 ~~l~i~G~~~------~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg------~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 214 TIWHQSGKGS------QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG------ALTVSEIAAAGLPALFV 280 (364)
T ss_dssp EEEEECCTTC------HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC------HHHHHHHHHHTCCEEEC
T ss_pred EEEEEcCCch------HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc------hHHHHHHHHhCCCEEEe
Confidence 7 56678764 36788888888774 79999999999999999999999982 89999999999999999
Q ss_pred CCCCcc--------eeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 203 AAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 203 ~~~~~~--------e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
+.++.. ++++++ .|++++++|.++++++++|.++ |++.++++++++++.+. .|+|+.+++++.++|++
T Consensus 281 ~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 281 PFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASI-PDATERVANEVSRVARA 356 (364)
T ss_dssp CCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHHTT
T ss_pred eCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHH
Confidence 998764 455444 5999998665589999999998 99999999999998764 79999999999999976
Q ss_pred HHHhh
Q 023290 275 VLKKS 279 (284)
Q Consensus 275 ~~~~~ 279 (284)
.-..+
T Consensus 357 ~~~~~ 361 (364)
T 1f0k_A 357 LEHHH 361 (364)
T ss_dssp C----
T ss_pred HHhhc
Confidence 55443
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.92 E-value=2.8e-25 Score=188.61 Aligned_cols=207 Identities=9% Similarity=0.055 Sum_probs=160.0
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEec
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 91 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g 91 (284)
..++.+|.+++.|+...+.+.+ +|++ ++.+++|+........ . .. + ..+++++.|
T Consensus 149 ~~~~~~d~ii~~S~~~~~~l~~-----~g~~--ki~vi~n~~f~~~~~~-~-------------~~--l--~~~vi~~~~ 203 (374)
T 2xci_A 149 ILSKKFDLIIMRTQEDVEKFKT-----FGAK--RVFSCGNLKFICQKGK-G-------------IK--L--KGEFIVAGS 203 (374)
T ss_dssp HHHTTCSEEEESCHHHHHHHHT-----TTCC--SEEECCCGGGCCCCCS-C-------------CC--C--SSCEEEEEE
T ss_pred HHHHhCCEEEECCHHHHHHHHH-----cCCC--eEEEcCCCccCCCcCh-h-------------hh--h--cCCEEEEEe
Confidence 3457799999999998887543 4665 8999999732111000 0 00 1 124555555
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC--------CcEEEeccccC
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------DRVHFVNKTLT 163 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~--------~~v~~~~~~~~ 163 (284)
+ ..||.+.+++|+..+.+ ++|+++|+|+|.++. ..+.++++++++++. ++|.+.|..++
T Consensus 204 ~--~~k~~~~ll~A~~~l~~-------~~p~~~lvivG~g~~----~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~d 270 (374)
T 2xci_A 204 I--HTGEVEIILKAFKEIKK-------TYSSLKLILVPRHIE----NAKIFEKKARDFGFKTSFFENLEGDVILVDRFGI 270 (374)
T ss_dssp E--CGGGHHHHHHHHHHHHT-------TCTTCEEEEEESSGG----GHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSC
T ss_pred C--CCchHHHHHHHHHHHHh-------hCCCcEEEEECCCHH----HHHHHHHHHHHCCCceEEecCCCCcEEEECCHHH
Confidence 3 46899999999998865 448999999998751 235788889988876 46888888899
Q ss_pred HHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecC-CceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 164 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 164 ~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~-~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+..+|+.||++++||.. .+++|++++||||||+|||++ +.++.++.+++. .+|++++++| +++++++|.++++|
T Consensus 271 l~~~y~~aDv~vl~ss~-~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d- 346 (374)
T 2xci_A 271 LKELYPVGKIAIVGGTF-VNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV- 346 (374)
T ss_dssp HHHHGGGEEEEEECSSS-SSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-
T ss_pred HHHHHHhCCEEEECCcc-cCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-
Confidence 99999999998888652 467889999999999999975 678888887653 5788888888 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 023290 242 ERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~ 260 (284)
+.+++|++++++.+.++++
T Consensus 347 ~~r~~mg~~ar~~~~~~~g 365 (374)
T 2xci_A 347 KKEIKVEEKSREIKGCYLE 365 (374)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999998876544
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.86 E-value=6.4e-22 Score=168.21 Aligned_cols=218 Identities=12% Similarity=0.029 Sum_probs=156.6
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 94 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~ 94 (284)
+.++.+++.|....+++.+ .|++.+++.+++|+........ .. +..+++++ .++.++++++|++.
T Consensus 145 ~~~~~~~~~s~~~~~~l~~-----~g~~~~ki~vi~n~~~d~~~~~-~~-------~~~~~~~~--~~~~~vl~~~gr~~ 209 (376)
T 1v4v_A 145 VLTDLDFAPTPLAKANLLK-----EGKREEGILVTGQTGVDAVLLA-AK-------LGRLPEGL--PEGPYVTVTMHRRE 209 (376)
T ss_dssp HHCSEEEESSHHHHHHHHT-----TTCCGGGEEECCCHHHHHHHHH-HH-------HCCCCTTC--CSSCEEEECCCCGG
T ss_pred HHhceeeCCCHHHHHHHHH-----cCCCcceEEEECCchHHHHhhh-hh-------hhHHHHhc--CCCCEEEEEeCccc
Confidence 3477888888887776443 4777788999998753221110 00 01122223 24556777899988
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEE-ecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~a 171 (284)
..||++.+++|+..+.+ +++++++++. |.++ ...+.+++++.. .++|.|+|.. .++..+|+.|
T Consensus 210 ~~k~~~~ll~a~~~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~a 275 (376)
T 1v4v_A 210 NWPLLSDLAQALKRVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRAS 275 (376)
T ss_dssp GGGGHHHHHHHHHHHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTE
T ss_pred chHHHHHHHHHHHHHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhC
Confidence 88899999999998865 2378888886 5432 135556655432 3589999543 3889999999
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHH
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 250 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~ 250 (284)
|+++.|| + |+ ++|||++|+|||++ +.++..++++++ +|++++. | +++++++|.++++|++.+++|+++
T Consensus 276 d~~v~~S----~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~ 344 (376)
T 1v4v_A 276 LLLVTDS----G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMRKA 344 (376)
T ss_dssp EEEEESC----H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHHHS
T ss_pred cEEEECC----c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhccc
Confidence 9999987 1 34 88999999999987 467888877554 7898863 5 999999999999999999998864
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 251 GYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+ +.|.+...++++.+.+.++++
T Consensus 345 ~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 345 K-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp C-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred C-----CCCCCChHHHHHHHHHHHHhc
Confidence 3 356777778888888887765
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.79 E-value=9.6e-19 Score=145.57 Aligned_cols=194 Identities=9% Similarity=-0.015 Sum_probs=142.4
Q ss_pred ccccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 11 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 11 ~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...++.+|.+++.|..+.+++.+ .|++..++.++++. +... ..+ ...+.++++++|+
T Consensus 128 ~~~y~~aD~Ii~~S~~~~~~l~~-----~G~~~~ki~~~~~~-~~~~--~~~---------------~~~~~~~~~i~ya 184 (339)
T 3rhz_A 128 IAYYNKADVVVAPSQKMIDKLRD-----FGMNVSKTVVQGMW-DHPT--QAP---------------MFPAGLKREIHFP 184 (339)
T ss_dssp HHHHTTCSEEEESCHHHHHHHHH-----TTCCCSEEEECCSC-CCCC--CCC---------------CCCCEEEEEEEEC
T ss_pred HHHHHHCCEEEECCHHHHHHHHH-----cCCCcCceeecCCC-CccC--ccc---------------ccccCCCcEEEEe
Confidence 34578999999999999888655 47766666544432 2111 000 0012356789999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 91 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 91 g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
|++.....+.. + .++++|+++|+|+.. .++ +|.|+|++ +++..++
T Consensus 185 G~l~k~~~L~~----l-------------~~~~~f~ivG~G~~~---------------~l~-nV~f~G~~~~~el~~~l 231 (339)
T 3rhz_A 185 GNPERFSFVKE----W-------------KYDIPLKVYTWQNVE---------------LPQ-NVHKINYRPDEQLLMEM 231 (339)
T ss_dssp SCTTTCGGGGG----C-------------CCSSCEEEEESCCCC---------------CCT-TEEEEECCCHHHHHHHH
T ss_pred CCcchhhHHHh----C-------------CCCCeEEEEeCCccc---------------CcC-CEEEeCCCCHHHHHHHH
Confidence 99985322211 1 178999999998631 244 89999986 7899999
Q ss_pred hhccEEEEcCCC-----CcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHH
Q 023290 169 AAIDVLVQNSQA-----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 243 (284)
Q Consensus 169 ~~ad~~~~ps~~-----~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~ 243 (284)
+.+|+.+..... ...++|.+++||||+|+|||+++.++..++++++.+|+.+++ .++++++|..+ +++.
T Consensus 232 ~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~~----~~e~~~~i~~l--~~~~ 305 (339)
T 3rhz_A 232 SQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVKD----VEEAIMKVKNV--NEDE 305 (339)
T ss_dssp HTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEESS----HHHHHHHHHHC--CHHH
T ss_pred HhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeCC----HHHHHHHHHHh--CHHH
Confidence 999998876221 013568999999999999999999999999999999999873 78999999886 4677
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHH
Q 023290 244 RLTMGKRGYERVKEIFQEHHMAER 267 (284)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
+++|++++++... .+++..++++
T Consensus 306 ~~~m~~na~~~a~-~~~~~~f~k~ 328 (339)
T 3rhz_A 306 YIELVKNVRSFNP-ILRKGFFTRR 328 (339)
T ss_dssp HHHHHHHHHHHTH-HHHTTHHHHH
T ss_pred HHHHHHHHHHHHH-HhhccHHHHH
Confidence 8999999998754 4676666655
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.78 E-value=1.4e-18 Score=148.41 Aligned_cols=224 Identities=15% Similarity=0.176 Sum_probs=152.6
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhC-CCCC-CeEEEEecc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNE-DLLFAIINS 92 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~i~~~g~ 92 (284)
+.++.+++.++...+++.+ .|++++++.+++|++.................+..+++++| ++++ ++++++.+|
T Consensus 165 ~~a~~~~~~se~~~~~l~~-----~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR 239 (396)
T 3dzc_A 165 ALTQYHFAPTDTSRANLLQ-----ENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHR 239 (396)
T ss_dssp HTCSEEEESSHHHHHHHHH-----TTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSC
T ss_pred HhcCEEECCCHHHHHHHHH-----cCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECC
Confidence 4667888888887776543 58888899999986532221111100000111367888999 4444 444445545
Q ss_pred cc-ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEE-ecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH
Q 023290 93 VS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 168 (284)
Q Consensus 93 ~~-~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~ 168 (284)
.. ..|+++.+++|+..+.+ +++++++++. |.++ ...+.++++ .+..++|.++++. .++..+|
T Consensus 240 ~~~~~~~~~~ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~ 305 (396)
T 3dzc_A 240 RESFGGGFERICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLM 305 (396)
T ss_dssp BCCCTTHHHHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHH
Confidence 33 35788999999988865 3378998886 4321 133444433 2444689998876 5788999
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHH
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 247 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~ 247 (284)
+.||+++.+| + | ...|||++|+|+|++ +.++..+.+++| .++++.. | ++++++++..+++|++.+++|
T Consensus 306 ~~ad~vv~~S---G---g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~~~~m 374 (396)
T 3dzc_A 306 DRAHIILTDS---G---G-IQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQAYQAM 374 (396)
T ss_dssp HHCSEEEESC---S---G-GGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHHHHHH
T ss_pred HhcCEEEECC---c---c-HHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHHHHHH
Confidence 9999999887 1 3 338999999999998 677777888776 5677764 4 899999999999999999998
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 248 GKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++. .|.....++++.+++.
T Consensus 375 ~~~~~-----~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 375 SQAHN-----PYGDGKACQRIADILA 395 (396)
T ss_dssp HTSCC-----TTCCSCHHHHHHHHHH
T ss_pred hhccC-----CCcCChHHHHHHHHHh
Confidence 87653 3555556666665553
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.74 E-value=1.1e-17 Score=143.15 Aligned_cols=219 Identities=16% Similarity=0.138 Sum_probs=150.6
Q ss_pred cccccccchhhHHHHHHHHHHHhcccCCCeEEEecCC-ccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccc
Q 023290 17 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 95 (284)
Q Consensus 17 ~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~ 95 (284)
++.+++.++...+.+.+ .|++++++.+++|+. |...+...... +...++++ +++++++++.+|...
T Consensus 170 a~~~~~~se~~~~~l~~-----~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~ 236 (403)
T 3ot5_A 170 ADIHFSPTKQAKENLLA-----EGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRREN 236 (403)
T ss_dssp CSEEEESSHHHHHHHHH-----TTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHH
T ss_pred cCEEECCCHHHHHHHHH-----cCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccc
Confidence 56677788877776544 588888999999864 33222111100 01334444 334555556666533
Q ss_pred -cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhcc
Q 023290 96 -GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 172 (284)
Q Consensus 96 -~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad 172 (284)
.++++.+++++..+.+ +++++++++.++..+ ...+.++++ ++..++|.++++. .++..+|+.||
T Consensus 237 ~~~~l~~ll~a~~~l~~-------~~~~~~~v~~~~~~~---~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~ad 303 (403)
T 3ot5_A 237 LGEPMQGMFEAVREIVE-------SREDTELVYPMHLNP---AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKSY 303 (403)
T ss_dssp HTTHHHHHHHHHHHHHH-------HCTTEEEEEECCSCH---HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHEE
T ss_pred cCcHHHHHHHHHHHHHH-------hCCCceEEEecCCCH---HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhcC
Confidence 4778999999988866 337899888754221 133333333 3344689999987 48999999999
Q ss_pred EEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHH
Q 023290 173 VLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 251 (284)
Q Consensus 173 ~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~ 251 (284)
+++.+| |...+||+++|+|+|++ +.++..+.++.| +|+++.. | ++++++++.++++|++.+++|++++
T Consensus 304 ~vv~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~~~~m~~~~ 372 (403)
T 3ot5_A 304 LVFTDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKESHDKMAQAA 372 (403)
T ss_dssp EEEECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHHHSC
T ss_pred EEEECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHHHHHHHhhc
Confidence 999776 23338999999999998 677777887655 7888875 5 9999999999999999998887654
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 252 YERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
. .|.....++++.+++.+.+.
T Consensus 373 ~-----~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 373 N-----PYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp C-----TTCCSCHHHHHHHHHHHHHT
T ss_pred C-----cccCCcHHHHHHHHHHHHhC
Confidence 3 35555666777777776665
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.66 E-value=1.8e-15 Score=129.96 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=126.8
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
++..++++.|+.. .++.+.+.+++..+.+ .++++++++++.... +.++ .+.++|.+.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~~----~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSLDV----SGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCCC----TTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCCh----hhhc------cCCCcEEEeCCC
Confidence 3456778889886 6777777666666543 467777776654211 1111 245789999999
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
++..+|+.||++|.++- +++++|||++|+|+|+.+.++ +.+.+.+...|+++++++.++++++++|.++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~l 373 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRL 373 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 89999999999996653 479999999999999976553 5677778889999988733399999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 238 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
++|++.++++++.+++... .++++.+++.+.+++.+
T Consensus 374 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 374 LAEESYRAGARAVAAEIAA-MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHCHHHHHHHHHHHHHHHH-SCCHHHHHTTHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 9999999999998887665 58999999998888753
No 33
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.64 E-value=3.4e-15 Score=126.14 Aligned_cols=193 Identities=15% Similarity=0.066 Sum_probs=126.8
Q ss_pred CCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCe-EEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCC
Q 023290 44 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 122 (284)
Q Consensus 44 ~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~ 122 (284)
+++.++.|++..+.+.... .+.+++++++ ++++.|+....+..+.+.+++..+.. ..+
T Consensus 153 ~k~~~~g~pvr~~~~~~~~-------------~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~--------~~~ 211 (365)
T 3s2u_A 153 DKRLTTGNPVRGELFLDAH-------------ARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPL--------EIR 211 (365)
T ss_dssp --CEECCCCCCGGGCCCTT-------------SSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCT--------TTC
T ss_pred CcEEEECCCCchhhccchh-------------hhcccCCCCcEEEEECCcCCccccchhhHHHHHhccc--------ccc
Confidence 4566666766655543221 2234444544 44555777776666777777765422 134
Q ss_pred eEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 123 VHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 123 ~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
+.++. +|.+ ..+.+.+..+..+. ++.+.++.+++.++|+.||++|+.+ .++++.|+|++|+|+|.
T Consensus 212 ~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra------G~~Tv~E~~a~G~P~Il 277 (365)
T 3s2u_A 212 PAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA------GALTVSELTAAGLPAFL 277 (365)
T ss_dssp CEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC------CHHHHHHHHHHTCCEEE
T ss_pred eEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC------CcchHHHHHHhCCCeEE
Confidence 45544 4433 34555556666554 6778899999999999999999543 26899999999999998
Q ss_pred cCCCCc--------ceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 202 TAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 202 ~~~~~~--------~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
.+.+.. .+.+.+...|++++..+.+++.++++|.++++|++.+++|++++++... ... ++++.+.+.
T Consensus 278 ip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~-~~a----a~~ia~~i~ 352 (365)
T 3s2u_A 278 VPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAK-PEA----TRTVVDACL 352 (365)
T ss_dssp CC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCC-TTH----HHHHHHHHH
T ss_pred eccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCC-ccH----HHHHHHHHH
Confidence 765432 2345566678888877666999999999999999999999999887443 233 444444444
Q ss_pred HHH
Q 023290 274 EVL 276 (284)
Q Consensus 274 ~~~ 276 (284)
++.
T Consensus 353 ~la 355 (365)
T 3s2u_A 353 EVA 355 (365)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 34
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.56 E-value=1.7e-14 Score=126.55 Aligned_cols=227 Identities=11% Similarity=0.065 Sum_probs=148.9
Q ss_pred cccCCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCC--CeEEEE
Q 023290 12 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAI 89 (284)
Q Consensus 12 ~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~i~~ 89 (284)
..++.+|.+++....... + ....+++..+|+..-. +.+....+ .+..++++++ .+++++
T Consensus 386 TGl~~iDY~i~D~~~~~~---~------~~ysEklirLP~~~~~--~~p~~~~p--------~r~~~~lp~~~G~v~Fg~ 446 (631)
T 3q3e_A 386 THSDFIEYVIVEDDYVGS---E------ECFSETLLRLPKDALP--YVPSALAP--------EKVDYLLRENPEVVNIGI 446 (631)
T ss_dssp CCCTTCCEEEEEGGGCCC---G------GGCSSEEEEECTTSSC--CCCCTTCC--------SSCCCCCCSCCSEEEEEE
T ss_pred cCcccCCEEEeCCCCCCc---c------cCceeeEEECCCCccc--cCCcccCC--------ccccccCCcCCCeEEEEE
Confidence 345677777776543211 1 1445677777764211 11111100 1244666654 577777
Q ss_pred eccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEE--EEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHH
Q 023290 90 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 165 (284)
Q Consensus 90 ~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~--i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~ 165 (284)
+++ ..|..+.++++|.++.++. |+..+. ++|.+.. ....+.+.+.+.|+.+++.|.|.. .+..
T Consensus 447 fn~--~~Ki~p~~l~~WarIL~~v-------P~s~L~l~~~g~~~g----~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~l 513 (631)
T 3q3e_A 447 AST--TMKLNPYFLEALKAIRDRA-------KVKVHFHFALGQSNG----ITHPYVERFIKSYLGDSATAHPHSPYHQYL 513 (631)
T ss_dssp EEC--STTCCHHHHHHHHHHHHHC-------SSEEEEEEEESSCCG----GGHHHHHHHHHHHHGGGEEEECCCCHHHHH
T ss_pred CCc--cccCCHHHHHHHHHHHHhC-------CCcEEEEEecCCCch----hhHHHHHHHHHcCCCccEEEcCCCCHHHHH
Confidence 776 4688999999999998754 666554 3564221 223333445567887899999986 5677
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee------cCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV------NGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~------~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|+.||+++.|+. + +.|++.+|||+||+|||+.....+.+.+. -|-.++++.. + .+++++...++..
T Consensus 514 a~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~-d--~eeYv~~Av~La~ 587 (631)
T 3q3e_A 514 RILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN-T--VDEYVERAVRLAE 587 (631)
T ss_dssp HHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES-S--HHHHHHHHHHHHH
T ss_pred HHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC-C--HHHHHHHHHHHhC
Confidence 88999999999986 5 44999999999999999987666555442 2333433322 2 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHh
Q 023290 240 HVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 278 (284)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 278 (284)
|++.+++++++.++.... .|+ ...+++.+.|++++.+
T Consensus 588 D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 588 NHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNA 626 (631)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHH
Confidence 999999999888876533 343 4455566666655543
No 35
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.55 E-value=2.1e-14 Score=123.98 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=117.7
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEE-EEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
+.++++++|++. .++.+.+.+++..+.. .+++++ +++|.+... +.++ .++++|.+.|+.
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~--------~~~~~~~~~~G~~~~~-----~~l~------~~~~~v~~~~~~ 291 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGN--------LPGWHLVLQIGRKVTP-----AELG------ELPDNVEVHDWV 291 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTT--------CTTEEEEEECC---CG-----GGGC------SCCTTEEEESSC
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhc--------CCCeEEEEEeCCCCCh-----HHhc------cCCCCeEEEecC
Confidence 456788899987 4444444443333311 146777 467765321 1111 245789999998
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
++. .+|+.||++|..+- .++++|||++|+|+|+.+.++ +.+.+.+...|+.++.++.++++++++|.++
T Consensus 292 ~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~l 364 (430)
T 2iyf_A 292 PQL-AILRQADLFVTHAG------AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALAL 364 (430)
T ss_dssp CHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHH
T ss_pred CHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHH
Confidence 666 89999999997552 378999999999999997654 3455667778999987743489999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 023290 238 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 276 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (284)
++|++.++++++.+++... .++++.+++.+.+++.+..
T Consensus 365 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 365 VDDPEVARRLRRIQAEMAQ-EGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHTTSCC--
T ss_pred HcCHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhccc
Confidence 9999999999988887654 5788999888888776544
No 36
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.55 E-value=9.9e-15 Score=123.79 Aligned_cols=199 Identities=11% Similarity=0.101 Sum_probs=133.2
Q ss_pred CcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc-
Q 023290 16 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS- 94 (284)
Q Consensus 16 ~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~- 94 (284)
.++.+++.+....+.+.+ .|++++++.++.|+.-.......+ ...+..+++++|+++++++++..++..
T Consensus 146 ~a~~~~~~te~~~~~l~~-----~G~~~~~I~vtGnp~~D~~~~~~~-----~~~~~~~~~~lgl~~~~~iLvt~hr~e~ 215 (385)
T 4hwg_A 146 ISDVNITLTEHARRYLIA-----EGLPAELTFKSGSHMPEVLDRFMP-----KILKSDILDKLSLTPKQYFLISSHREEN 215 (385)
T ss_dssp HCSEEEESSHHHHHHHHH-----TTCCGGGEEECCCSHHHHHHHHHH-----HHHHCCHHHHTTCCTTSEEEEEECCC--
T ss_pred hhceeecCCHHHHHHHHH-----cCCCcCcEEEECCchHHHHHHhhh-----hcchhHHHHHcCCCcCCEEEEEeCCchh
Confidence 355666777776666444 588888999999865322211100 011356788999987676666666643
Q ss_pred --ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHc-C---CCCcEEEeccc--cCHHH
Q 023290 95 --RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K---IQDRVHFVNKT--LTVAP 166 (284)
Q Consensus 95 --~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~---~~~~v~~~~~~--~~~~~ 166 (284)
..+++..+++++.++.+. + ++.+++... + .+++.+++. + ..++|.+.++. .++..
T Consensus 216 ~~~~~~l~~ll~al~~l~~~-------~-~~~vv~p~~-p--------~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~ 278 (385)
T 4hwg_A 216 VDVKNNLKELLNSLQMLIKE-------Y-NFLIIFSTH-P--------RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVK 278 (385)
T ss_dssp ---CHHHHHHHHHHHHHHHH-------H-CCEEEEEEC-H--------HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhc-------C-CeEEEEECC-h--------HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHH
Confidence 337788999999887651 1 566666443 1 233444443 2 23589988765 47889
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC-cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHHHHH
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 245 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~-~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~ 245 (284)
+|+.||+++.+| |....||+++|+|+|+..... ..|.++.| +++++.. | .+++++++..+++|++.++
T Consensus 279 l~~~adlvvt~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~ 347 (385)
T 4hwg_A 279 LQMNAFCILSDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNK 347 (385)
T ss_dssp HHHHCSEEEECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTB
T ss_pred HHHhCcEEEECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHH
Confidence 999999999665 335799999999999976543 45667555 5677654 4 8999999999999987776
Q ss_pred HHHHHHH
Q 023290 246 TMGKRGY 252 (284)
Q Consensus 246 ~~~~~~~ 252 (284)
.|++++.
T Consensus 348 ~m~~~~~ 354 (385)
T 4hwg_A 348 RTQGLVP 354 (385)
T ss_dssp CCSCCCH
T ss_pred HhhccCC
Confidence 6654433
No 37
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.51 E-value=1.7e-14 Score=123.29 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=105.4
Q ss_pred CCCeEEEEeccccccc----------cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC
Q 023290 82 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 151 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k----------~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 151 (284)
+...+++++|++...+ .+..+++++.. .++++++++++. ..+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~~-----~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSDK-----LAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCCc-----chhhhc------cC
Confidence 4556777889986554 34444444432 467888887754 122222 34
Q ss_pred CCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC----CCCcceeeecCCceeeecCCCCCh
Q 023290 152 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNGTTGLLHPVGKEGI 227 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~----~~~~~e~v~~~~~g~~~~~~d~~~ 227 (284)
+++|.+.++. ++..+|..||++|..+ .+.+++|||++|+|+|+.. ..++.+.+.+...|++++..+.++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~~g------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 355 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVHHG------GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGV 355 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC------
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEecC------CHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCH
Confidence 6799999998 6899999999999543 3679999999999999954 446667788888999998774348
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 023290 228 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 269 (284)
Q Consensus 228 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (284)
++++++|.++++|++.++++.+.+++.. ...+++.+++.+.
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIE 396 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Confidence 9999999999999999999988887755 4588888877664
No 38
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.50 E-value=5.9e-14 Score=119.67 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=120.0
Q ss_pred CCeEEEEeccccccccH-HHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 83 EDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~-~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
+..+++++|+....++. ..+++++.+. . +.++++++++|++.. .+.+. +++++|.+.++.
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~~-----~~~l~------~~~~~v~~~~~~ 278 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPEH-----RALLT------DLPDNARIAESV 278 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGGG-----GGGCT------TCCTTEEECCSC
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCcc-----hhhcc------cCCCCEEEeccC
Confidence 44666777888665544 6666766655 4 337899999887531 11111 346789999987
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC----CCcceeeecCCceeeecC--CCCChHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPV--GKEGITPLAKNIV 235 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~----~~~~e~v~~~~~g~~~~~--~d~~~~~~~~~i~ 235 (284)
+...++..||++|..+ .+.+++|||++|+|+|+... ..+.+.+.+...|..+++ .+.+++.++++|.
T Consensus 279 -~~~~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 351 (391)
T 3tsa_A 279 -PLNLFLRTCELVICAG------GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIA 351 (391)
T ss_dssp -CGGGTGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHH
T ss_pred -CHHHHHhhCCEEEeCC------CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHH
Confidence 5667889999999543 35689999999999999543 445566778889999987 2223999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 236 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
++++|++.++++.+.+++.. ...+++.+++.+.+++.
T Consensus 352 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 352 TVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 99999999999988777654 56888888887766543
No 39
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.46 E-value=3.1e-13 Score=115.51 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=116.6
Q ss_pred CCeEEEEecccccc-ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 83 EDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~-k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
...+++++|++... ++.+.+.+++..+.+ .++++++++++... +.+. +++++|.+.++.
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~~-----~~l~------~~~~~v~~~~~~ 291 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLDI-----SPLG------TLPRNVRAVGWT 291 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSCC-----GGGC------SCCTTEEEESSC
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcCh-----hhhc------cCCCcEEEEccC
Confidence 45677788998654 354555444444432 57888888876421 1111 356799999998
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE----cCCCCcc--eeeecCCceeeecCCCCChHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG----TAAGGTT--EIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~----~~~~~~~--e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
++..+|..||++|..+ .+.+++|||++|+|+|+ .+...+. +.+.+...|+.++..+.+++.++
T Consensus 292 -~~~~ll~~ad~~v~~~------G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~---- 360 (398)
T 3oti_A 292 -PLHTLLRTCTAVVHHG------GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR---- 360 (398)
T ss_dssp -CHHHHHTTCSEEEECC------CHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----
T ss_pred -CHHHHHhhCCEEEECC------CHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----
Confidence 8999999999999543 35799999999999999 5667777 88888889999887643355555
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 236 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++++|++.++++.+.+++.. ...+++.+++.+.+++
T Consensus 361 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 78899999999988877654 5689998888887764
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.45 E-value=1.6e-12 Score=110.51 Aligned_cols=158 Identities=12% Similarity=0.085 Sum_probs=113.8
Q ss_pred CCeEEEEecccccc-------ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE
Q 023290 83 EDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 155 (284)
Q Consensus 83 ~~~~i~~~g~~~~~-------k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 155 (284)
...+++++|++... +.+..+++++.. .++++++++++. ..+.++ . ++++|
T Consensus 210 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~~-----~~~~l~----~--~~~~v 266 (384)
T 2p6p_A 210 RQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPDT-----VAEALR----A--EVPQA 266 (384)
T ss_dssp SCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCHH-----HHHHHH----H--HCTTS
T ss_pred CCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCCC-----CHHhhC----C--CCCce
Confidence 45677889998865 456666666543 467888765431 222222 1 34688
Q ss_pred EEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHH
Q 023290 156 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLA 231 (284)
Q Consensus 156 ~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~ 231 (284)
.+ ++. +...+|..||++|..+ .+++++|||++|+|+|+.+..+ +.+.+.+...|+.++..+.++++++
T Consensus 267 ~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~ 338 (384)
T 2p6p_A 267 RV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIA 338 (384)
T ss_dssp EE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHH
T ss_pred EE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHH
Confidence 99 887 5788999999999754 2468999999999999997643 5556667778998886644489999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 232 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 232 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++|.++++|++.++++.+.+.+.. ..-..+..++.+.+++
T Consensus 339 ~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 339 DSCQELQAKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 999999999998888887776544 3456666666555554
No 41
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=97.93 Aligned_cols=133 Identities=6% Similarity=0.037 Sum_probs=96.8
Q ss_pred CCCeEEEEecccc---ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEe
Q 023290 82 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 158 (284)
Q Consensus 82 ~~~~~i~~~g~~~---~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 158 (284)
+...+++++|++. +.|.+..+++++.. .+.++++++++... ..++++|.+.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQ------------IPQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTT------------SSSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHh------------CCCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 3467788899985 45666666666643 34677777654311 0245689999
Q ss_pred ccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC----CcceeeecCCceeeecCCCCChHHHHH
Q 023290 159 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 159 ~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~d~~~~~~~~ 232 (284)
++.++ ..++ ..||++|..+ .+++++|||++|+|+|+.+.. .+.+.+.+...|+.++..+.+++++++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 98744 5667 8999999643 258999999999999999764 345566677889998876444899999
Q ss_pred HHHHHhhCHHHHHHH
Q 023290 233 NIVKLATHVERRLTM 247 (284)
Q Consensus 233 ~i~~l~~~~~~~~~~ 247 (284)
+|.+++.|++.++++
T Consensus 147 ~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 147 ALKRVINDPSYKENV 161 (170)
T ss_dssp HHHHHHHCHHHHHHH
T ss_pred HHHHHHcCHHHHHHH
Confidence 999999998755443
No 42
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.40 E-value=1.3e-11 Score=110.78 Aligned_cols=259 Identities=14% Similarity=0.072 Sum_probs=171.3
Q ss_pred cCCcccccccchhhHHHHHHH-HHHHhcccCCCeEEEecCCccccc----hhhhh-------------------------
Q 023290 14 LPLVAGAMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAED------------------------- 63 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~~g~~~~~~----~~~~~------------------------- 63 (284)
+..++.+-.+|...++.++.. +...+...+.++.-|-||+++..+ .+..+
T Consensus 400 i~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~ 479 (796)
T 2c4m_A 400 CYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSY 479 (796)
T ss_dssp HHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGG
T ss_pred HHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhh
Confidence 446677777888777776632 122234556789999999998877 22210
Q ss_pred --h--------hHHHHHHHH----HHHHhCC--CCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEE
Q 023290 64 --N--------VAKRVLREH----VRESLGV--RNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAV 126 (284)
Q Consensus 64 --~--------~~~~~~~~~----~r~~~~~--~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~ 126 (284)
. ..+...+.. +++++|+ +++.+.++++.|+..+|+.++ ++..+.++.+..........+++++
T Consensus 480 ~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~I 559 (796)
T 2c4m_A 480 ADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVI 559 (796)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEE
Confidence 0 112222334 4677776 456799999999999999999 8888887754322111111469999
Q ss_pred EEecCCCCChHHHHH---HHHHHH----HcCCCC--cEEEeccc-cCH-HHHHhhccEEEEcCCCCcCccchhHHHHHhc
Q 023290 127 IIGSDMNAQTKFESE---LRNYVM----QKKIQD--RVHFVNKT-LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAF 195 (284)
Q Consensus 127 i~G~~~~~~~~~~~~---l~~~~~----~~~~~~--~v~~~~~~-~~~-~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~ 195 (284)
+.|.+.+.....+.- +...++ +..+++ +|.|+... ..+ ..++..||+.++||+...|++|++-+=+|..
T Consensus 560 f~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~N 639 (796)
T 2c4m_A 560 FGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMN 639 (796)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHT
T ss_pred EEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHc
Confidence 999988775433222 222332 124666 78887654 333 4578999999999997789999999999999
Q ss_pred CCCEEEcCCCCcceeeec--CCceeeecCCCCChHHHHHH---HHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023290 196 QLPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 196 G~Pvi~~~~~~~~e~v~~--~~~g~~~~~~d~~~~~~~~~---i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (284)
|.+.|++-.|.+.|+.++ ..||+.+.....++.++... ....-.++ ..+++..++ ....|+|..- ..+.+
T Consensus 640 GaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~-~~~~vvd~~---~~g~fs~~~~-~~y~~ 714 (796)
T 2c4m_A 640 GALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVP-GLKRALDAL---DNGTLNDNNS-GLFYD 714 (796)
T ss_dssp TCEEEEESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHST-THHHHHHTT---TSSSSCCTTC-CHHHH
T ss_pred CCeEEeccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCH-HHHHHHHHH---HcCCCCCCCH-HHHHH
Confidence 999999988888877654 46999998743226555542 22222344 233333333 2357888776 67888
Q ss_pred HHHHHHH
Q 023290 271 VLKEVLK 277 (284)
Q Consensus 271 ~~~~~~~ 277 (284)
+|..++.
T Consensus 715 Ly~~L~~ 721 (796)
T 2c4m_A 715 LKHSLIH 721 (796)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 8888874
No 43
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.40 E-value=2.4e-11 Score=109.35 Aligned_cols=257 Identities=13% Similarity=0.071 Sum_probs=169.5
Q ss_pred ccCCcccccccchhhHHHHHHH-HHHHhcccCCCeEEEecCCccccc----hhhhh------------------------
Q 023290 13 HLPLVAGAMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAED------------------------ 63 (284)
Q Consensus 13 ~~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~~g~~~~~~----~~~~~------------------------ 63 (284)
.+..++.+-.+|...++.++.. +...+...+.++.-+-||+++..+ .+.-+
T Consensus 434 ai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y 513 (824)
T 2gj4_A 434 CIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSY 513 (824)
T ss_dssp HHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGG
T ss_pred HHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhc
Confidence 3556777778888777776532 222334557789999999988877 22111
Q ss_pred ----hh------HHHHHHHH----HHHHhCC--CCCCeEEEEeccccccccHHHH-HHHHHHHHHHHHhhccCCCCeEEE
Q 023290 64 ----NV------AKRVLREH----VRESLGV--RNEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAV 126 (284)
Q Consensus 64 ----~~------~~~~~~~~----~r~~~~~--~~~~~~i~~~g~~~~~k~~~~~-~~a~~~l~~~~~~~~~~~~~~~l~ 126 (284)
.. .+...+.. +++.+|+ +++.++++++.|+..+|+.+++ +..+.++.+..........+++++
T Consensus 514 ~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~I 593 (824)
T 2gj4_A 514 VDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVM 593 (824)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 01 11222233 5666776 4567999999999999999997 777777653332211011268999
Q ss_pred EEecCCCCChHHHHH---HHHHHHHc----CCCC--cEEEeccc-cCH-HHHHhhccEEEEcCCCCcCccchhHHHHHhc
Q 023290 127 IIGSDMNAQTKFESE---LRNYVMQK----KIQD--RVHFVNKT-LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAF 195 (284)
Q Consensus 127 i~G~~~~~~~~~~~~---l~~~~~~~----~~~~--~v~~~~~~-~~~-~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~ 195 (284)
+.|.+.+.....+.- +...++.. .+++ +|.|+... ..+ ..++..||+.++||+...|.+|++-+=||..
T Consensus 594 f~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlN 673 (824)
T 2gj4_A 594 IGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLN 673 (824)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHT
T ss_pred EEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHc
Confidence 999988775433222 33333322 2456 78887654 333 4578999999999997789999999999999
Q ss_pred CCCEEEcCCCCcceeee--cCCceeeecCCCCChHHHHHHHH-------HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 023290 196 QLPVLGTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLATHVERRLTMGKRGYERVKEIFQEHHMAE 266 (284)
Q Consensus 196 G~Pvi~~~~~~~~e~v~--~~~~g~~~~~~d~~~~~~~~~i~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (284)
|.+.|++-.|...|+.+ ...||+++... ++++ ..+. .+....+..+++..+. +...|+|..- .
T Consensus 674 GaLtigtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~l~~v~d~i---~~g~fs~~~~-~ 745 (824)
T 2gj4_A 674 GALTIGTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPELRQIIEQL---SSGFFSPKQP-D 745 (824)
T ss_dssp TCEEEECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHHHHHHHHHH---HHTTTCTTST-T
T ss_pred CceEEEEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHHHHHHHHHH---HhCCCCCCCh-H
Confidence 99999998887777654 35689988765 5555 3332 2333223344444443 3467998776 6
Q ss_pred HHHHHHHHHHH
Q 023290 267 RIAVVLKEVLK 277 (284)
Q Consensus 267 ~~~~~~~~~~~ 277 (284)
.+..+|.+++.
T Consensus 746 ~y~~ly~~l~~ 756 (824)
T 2gj4_A 746 LFKDIVNMLMH 756 (824)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 78888887764
No 44
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.38 E-value=2.4e-11 Score=109.02 Aligned_cols=256 Identities=13% Similarity=0.039 Sum_probs=170.6
Q ss_pred cCCcccccccchhhHHHHHHH-HHHHhcccCCCeEEEecCCccccc----hhhh--------------------------
Q 023290 14 LPLVAGAMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAE-------------------------- 62 (284)
Q Consensus 14 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~~g~~~~~~----~~~~-------------------------- 62 (284)
+..++.+-.+|...++.++.. +...+...+.++.-|-||+++..+ .+..
T Consensus 411 i~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~ 490 (796)
T 1l5w_A 411 VVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFA 490 (796)
T ss_dssp HHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGG
T ss_pred HHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcC
Confidence 345666677777777766532 112234556789999999988776 2221
Q ss_pred hh--------hHHHHHHHH----HHHHhCC--CCCCeEEEEeccccccccHHH-HHHHHHHHHHHHHhhccCCCCeEEEE
Q 023290 63 DN--------VAKRVLREH----VRESLGV--RNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVI 127 (284)
Q Consensus 63 ~~--------~~~~~~~~~----~r~~~~~--~~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~~~~~~~~~~l~i 127 (284)
.. ..+...+.. +++++|+ +++.+.++++.|+..+|+.++ ++..+.++.+..........++++++
T Consensus 491 ~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If 570 (796)
T 1l5w_A 491 DDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLF 570 (796)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEE
Confidence 00 112222334 4677786 456799999999999999999 88888877643322211224699999
Q ss_pred EecCCCCChHHHHH---HHHHHH----HcCCCC--cEEEeccc-cCH-HHHHhhccEEEEcCCCCcCccchhHHHHHhcC
Q 023290 128 IGSDMNAQTKFESE---LRNYVM----QKKIQD--RVHFVNKT-LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 196 (284)
Q Consensus 128 ~G~~~~~~~~~~~~---l~~~~~----~~~~~~--~v~~~~~~-~~~-~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G 196 (284)
.|.+.+.....+.- +...++ +..+++ +|.|+... ..+ ..++..||+.++||+...|++|++-+=+|..|
T Consensus 571 ~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NG 650 (796)
T 1l5w_A 571 GAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNG 650 (796)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTT
T ss_pred EecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcC
Confidence 99988775433222 222332 124566 78887654 333 45789999999999977899999999999999
Q ss_pred CCEEEcCCCCcceeeec--CCceeeecCCCCChHHHHHHHH-------HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 023290 197 LPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIV-------KLATHVERRLTMGKRGYERVKEIFQEHHMAER 267 (284)
Q Consensus 197 ~Pvi~~~~~~~~e~v~~--~~~g~~~~~~d~~~~~~~~~i~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
.+.|++-.|.+.|+.++ ..||+.+.. + ++++.+.-. ..-.++ ..+++...+. ...|+|..- ..
T Consensus 651 aL~iGtLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~---~g~fs~~~~-~~ 722 (796)
T 1l5w_A 651 ALTVGTLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDK-VLDAVLKELE---SGKYSDGDK-HA 722 (796)
T ss_dssp CEEEECSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHH---HTTTTTTCT-TT
T ss_pred CeeecCcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHH---cCCCCCCcH-HH
Confidence 99999988888887654 468999977 3 677663222 222355 3444444443 467998774 66
Q ss_pred HHHHHHHHHH
Q 023290 268 IAVVLKEVLK 277 (284)
Q Consensus 268 ~~~~~~~~~~ 277 (284)
+.++|..++.
T Consensus 723 y~~Ly~~L~~ 732 (796)
T 1l5w_A 723 FDQMLHSIGK 732 (796)
T ss_dssp THHHHHHTST
T ss_pred HHHHHHHHhc
Confidence 8888877653
No 45
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.38 E-value=3.7e-12 Score=108.73 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=113.1
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+...++++.|+....+. +.+..++..+.. .++++++ +|.+.. .+.+. .++++|.+.++
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQAFAD---------TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHHHHTT---------SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHHHHhc---------CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 34567778898865542 222222222211 3466665 454321 11111 24578999999
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC-----CCcceeeecCCceeeecCCCCChHHHHHHHH
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~-----~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~ 235 (284)
.++. .+|..||++|..+- ..+++|||++|+|+|+... ..+.+.+.+.+.|..++.++.+++.+++++.
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHH
Confidence 8666 99999999996552 4688999999999996544 3556667778889988876444999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 236 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
++++|++.++++.+.+.+.. +..+++..++.+.+++.+
T Consensus 362 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 362 RLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 99999999888887776644 457878877777776643
No 46
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.36 E-value=2.4e-12 Score=111.56 Aligned_cols=159 Identities=11% Similarity=0.022 Sum_probs=113.4
Q ss_pred CCeEEEEecccccc-----ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEE
Q 023290 83 EDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 157 (284)
Q Consensus 83 ~~~~i~~~g~~~~~-----k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 157 (284)
...+++++|++... +.+..+++++.. .++++++.+++.. .+.+. +++++|.+
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~ 323 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQQ-----LEGVA------NIPDNVRT 323 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTTT-----TSSCS------SCCSSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCcc-----hhhhc------cCCCCEEE
Confidence 35677889998753 777777777653 4678887765431 11110 34678999
Q ss_pred eccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHH
Q 023290 158 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKN 233 (284)
Q Consensus 158 ~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~ 233 (284)
.++.++ ..+|..||++|..+ .+++++|||++|+|+|+....+ +.+.+.+...|+.++..+.++++++++
T Consensus 324 ~~~~~~-~~ll~~ad~~V~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 396 (441)
T 2yjn_A 324 VGFVPM-HALLPTCAATVHHG------GPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRES 396 (441)
T ss_dssp CCSCCH-HHHGGGCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHH
T ss_pred ecCCCH-HHHHhhCCEEEECC------CHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHH
Confidence 999854 78899999999633 2579999999999999997743 455666777899888764459999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 234 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 234 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
|.++++|++.++++.+.+++.. .....+.+++.+.+++
T Consensus 397 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 434 (441)
T 2yjn_A 397 VKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELA 434 (441)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 9999999998888887776644 4577777777776655
No 47
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.31 E-value=1.8e-11 Score=105.11 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=111.1
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+...++++.|+...... .+++.+.+. +. + .++++++ +|.+.. .+.++ .++++|.+.++
T Consensus 246 ~~~~v~v~~Gs~~~~~~--~~~~~~~~a---l~----~-~~~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP--GFFRDCARA---FD----G-QPWHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH--HHHHHHHHH---HT----T-SSCEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH--HHHHHHHHH---Hh----c-CCcEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 34567778888754432 222222221 11 1 3477777 454321 11111 34678999999
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC----CCcceeeecCCceeeecCCCCChHHHHHHHHH
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~----~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
.+.. .+|..||++|..+- ..+++|||++|+|+|+... ..+.+.+.+...|..++..+.++++++++|.+
T Consensus 305 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 377 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHGG------MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGA 377 (415)
T ss_dssp CCHH-HHHHHEEEEEESCC------HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCc------HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHH
Confidence 8655 99999999996542 4689999999999999543 34556666777888887764449999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 023290 237 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 273 (284)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (284)
+++|++.++++.+.+.+.. ...+.+.+++.+.+++.
T Consensus 378 ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 378 VAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Confidence 9999999888887776644 45777777777777654
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=2.5e-10 Score=104.29 Aligned_cols=185 Identities=12% Similarity=0.143 Sum_probs=143.5
Q ss_pred HHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-C
Q 023290 75 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-D 153 (284)
Q Consensus 75 r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~ 153 (284)
|..+|++++.++++++.++ .|=.+.++++|.++++++ |+-+|++..... .....+++.+++.|+. +
T Consensus 514 R~~~gLp~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~v-------P~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQL--YKIDPSTLQMWANILKRV-------PNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCG--GGCCHHHHHHHHHHHHHC-------SSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCcc--ccCCHHHHHHHHHHHHhC-------CCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 6788999999888777654 577789999999998854 899999887643 2467888899998874 6
Q ss_pred cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee-----c-CCceeeecCCCC
Q 023290 154 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV-----N-GTTGLLHPVGKE 225 (284)
Q Consensus 154 ~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~-----~-~~~g~~~~~~d~ 225 (284)
+|.|.+.. ++....|+.+|+++-|.. + +.+++.+||+.||+|||+-.-..+..-+. . |-..+++. +
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p--~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~- 654 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL--C-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--N- 654 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--S-
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC--c-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--C-
Confidence 89999875 567778899999998765 3 45889999999999999976433332211 1 11223332 2
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHhh
Q 023290 226 GITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKKS 279 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
.+++.+.-..+..|++.+..+.++-++.... .|+...+++.+++.|+.+....
T Consensus 655 -~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~ 709 (723)
T 4gyw_A 655 -RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHY 709 (723)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888776654 6899999999999999987654
No 49
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.16 E-value=3.2e-10 Score=97.61 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=106.0
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEE-EEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
+..++++.|+.. ....+.+.+++..+.. .+++++ ++|.+... +.+ ..++++|.+.++.
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~~---------~~~~~~~~~g~~~~~-----~~~------~~~~~~v~~~~~~ 313 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVDG---------LDWHVVLSVGRFVDP-----ADL------GEVPPNVEVHQWV 313 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHTT---------CSSEEEEECCTTSCG-----GGG------CSCCTTEEEESSC
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHhc---------CCcEEEEEECCcCCh-----HHh------ccCCCCeEEecCC
Confidence 456777888876 3333333333333311 566774 45654311 111 1246789999998
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
.+. .+|..||++|..+ ..++++||+++|+|+|+....+ +.+.+.+...|+.++..+.++++++++|.++
T Consensus 314 ~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l 386 (424)
T 2iya_A 314 PQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAV 386 (424)
T ss_dssp CHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHH
T ss_pred CHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHH
Confidence 666 8999999998543 2479999999999999987642 3445556678888875533489999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 023290 238 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 272 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (284)
++|++.++++.+.+.+ +......+..++.+.+++
T Consensus 387 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 387 ASDPGVAERLAAVRQE-IREAGGARAAADILEGIL 420 (424)
T ss_dssp HHCHHHHHHHHHHHHH-HHTSCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 9999888777766654 333445555555555443
No 50
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.09 E-value=1.5e-09 Score=93.08 Aligned_cols=157 Identities=8% Similarity=0.014 Sum_probs=105.3
Q ss_pred CCeEEEEecccc-ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEE-ecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 83 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 83 ~~~~i~~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+..++++.|++. ..+..+.+++++..+ +.+++++ |.+... ...+++++.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~~-------------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADLV-------------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTCC-------------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCccc-------------ccCCCCCEEEeCc
Confidence 356777889884 666677777776542 3455554 654311 0234568999999
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHH
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
.++ ..+|..||++|..+ ..++++|||++|+|+|+....+ +.+.+++.+.|+.++..+.+.++++++|.+
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHH
Confidence 854 57899999999643 2479999999999999987654 445566667888887654458999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 023290 237 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 277 (284)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
+ .|++.++++.+.+.+ +....-.+++.+.+++++.
T Consensus 366 l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 366 A-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp H-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred H-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 9 998777666554443 3334455556666666554
No 51
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=98.96 E-value=4e-09 Score=90.19 Aligned_cols=139 Identities=9% Similarity=0.036 Sum_probs=96.2
Q ss_pred CCCeEEEEecccc-ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 82 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~-~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
+++.++++.|++. ..+....+++++.. .++++++.++..... ..+.++++.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~------------~~~~vv~~~g~~~~~------------~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRA------------QGRRVVLSSGWAGLG------------RIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHH------------TTCCEEEECTTTTCC------------CSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHh------------CCCEEEEEeCCcccc------------cccCCCCEEEecC
Confidence 3456677888887 55556666666654 356666665432110 1234678999998
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHH
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
. ....++..||++|..+ ...++.||+++|+|+|+....+- .+.+.+.+.|..++..+.+.+.++++|.+
T Consensus 276 ~-~~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 276 V-NHQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp C-CHHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred C-CHHHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHH
Confidence 7 4588999999999544 24689999999999999865442 23455566788877655459999999999
Q ss_pred HhhCHHHHHHHHHHHH
Q 023290 237 LATHVERRLTMGKRGY 252 (284)
Q Consensus 237 l~~~~~~~~~~~~~~~ 252 (284)
+++ ++.++++.+.+.
T Consensus 349 ll~-~~~~~~~~~~~~ 363 (404)
T 3h4t_A 349 ALT-PGIRARAAAVAG 363 (404)
T ss_dssp HTS-HHHHHHHHHHHT
T ss_pred HhC-HHHHHHHHHHHH
Confidence 998 776666554443
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.92 E-value=1.3e-08 Score=87.29 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=93.8
Q ss_pred CCeEEEEecccc---ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEE-ecCCCCChHHHHHHHHHHHHcCCCCcEEEe
Q 023290 83 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 158 (284)
Q Consensus 83 ~~~~i~~~g~~~---~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 158 (284)
+..++++.|+.. ..+....+++++.. .+.+++++ |.+... . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~~~-------~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRA------------QGRRVILSRGWTELV-------L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHH------------TTCCEEEECTTTTCC-------C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHH------------CCCeEEEEeCCcccc-------c------cCCCCCEEEe
Confidence 345666788874 33444455555543 34556664 654210 0 2356689999
Q ss_pred ccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHH
Q 023290 159 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNI 234 (284)
Q Consensus 159 ~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i 234 (284)
++.+ ...+|..||++|..+ ..++++||+++|+|+|+....+ +.+.+.+.+.|+.++..+.+.++++++|
T Consensus 292 ~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp SSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHH
T ss_pred ccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHH
Confidence 9874 778999999999633 2569999999999999976543 3445556678888876444589999999
Q ss_pred HHHhhCHHHHHHHHHHHH
Q 023290 235 VKLATHVERRLTMGKRGY 252 (284)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~ 252 (284)
.++ .|++.++++.+.++
T Consensus 365 ~~l-~~~~~~~~~~~~~~ 381 (416)
T 1rrv_A 365 TTV-LAPETRARAEAVAG 381 (416)
T ss_dssp HHH-TSHHHHHHHHHHTT
T ss_pred HHh-hCHHHHHHHHHHHH
Confidence 999 99887777655443
No 53
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.80 E-value=1.8e-08 Score=85.80 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCeEEEEecccccccc-HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc
Q 023290 83 EDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 161 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~-~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 161 (284)
...+++..|++...++ ...+.+++..+.. .+..+++.+.+.... ....+++++.+.++.
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~~ 296 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEWI 296 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECCC
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEeec
Confidence 3456667788765443 2333333333322 566777665543211 112456789999887
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHH
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l 237 (284)
....+|..||++|..+ ..++++|||++|+|+|+....+ +...+.+.+.|+.++..+ ..+++|.++
T Consensus 297 -p~~~lL~~~~~~v~h~------G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~----~~~~al~~l 365 (400)
T 4amg_A 297 -PLGALLETCDAIIHHG------GSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGS----LGAEQCRRL 365 (400)
T ss_dssp -CHHHHHTTCSEEEECC------CHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTT----CSHHHHHHH
T ss_pred -CHHHHhhhhhheeccC------CccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCC----chHHHHHHH
Confidence 5778999999998433 3568999999999999865443 444555656777776644 457889999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 023290 238 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 270 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (284)
++|++.+++..+-+.+ +...-+....++.+++
T Consensus 366 L~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 366 LDDAGLREAALRVRQE-MSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 9999877766554443 4444466665555544
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.23 E-value=7e-06 Score=66.12 Aligned_cols=94 Identities=7% Similarity=0.075 Sum_probs=65.0
Q ss_pred eEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCH
Q 023290 85 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 164 (284)
Q Consensus 85 ~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~ 164 (284)
.+++++|..++..-...+++++... .. -.++.|.+.+ ..+.+++..+.. .++.+.++.+++
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~~~-----------~~-i~vv~G~~~~----~~~~l~~~~~~~---~~v~v~~~~~~m 219 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELPKT-----------KI-ISIATSSSNP----NLKKLQKFAKLH---NNIRLFIDHENI 219 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSCTT-----------SC-EEEEECTTCT----THHHHHHHHHTC---SSEEEEESCSCH
T ss_pred eEEEEECCCchhhHHHHHHHHhhcC-----------CC-EEEEECCCch----HHHHHHHHHhhC---CCEEEEeCHHHH
Confidence 4556778766554344444444321 23 3456676543 456666665543 379999999999
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 204 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~ 204 (284)
.++|+.||++|.++ |.++.|++++|+|.|....
T Consensus 220 ~~~m~~aDlvI~~g-------G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 220 AKLMNESNKLIISA-------SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp HHHHHTEEEEEEES-------SHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHCCEEEECC-------cHHHHHHHHcCCCEEEEeC
Confidence 99999999999732 5799999999999998653
No 55
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.17 E-value=6.3e-05 Score=69.09 Aligned_cols=224 Identities=10% Similarity=0.091 Sum_probs=120.1
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEecccc
Q 023290 15 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 94 (284)
Q Consensus 15 ~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~ 94 (284)
...|.+++.|....+.++ +.++....++.++..+-....+.... ....+..+++++++++++.+|+|+-++.
T Consensus 477 ~~~D~~~~~s~~~~~~~~----~~f~~~~~~i~~~G~PR~D~l~~~~~----~~~~~~~~~~~~~~~~~kk~ILyaPT~r 548 (729)
T 3l7i_A 477 SRWDYLISPNRYSTEIFR----SAFWMDEERILEIGYPRNDVLVNRAN----DQEYLDEIRTHLNLPSDKKVIMYAPTWR 548 (729)
T ss_dssp TTCSEEEESSHHHHHHHH----HHTCCCGGGEEESCCGGGHHHHHSTT----CHHHHHHHHHHTTCCSSCEEEEECCCCC
T ss_pred ccCCEEEeCCHHHHHHHH----HHhCCCcceEEEcCCCchHHHhcccc----hHHHHHHHHHHhCCCCCCeEEEEeeeee
Confidence 346778888887777644 44666655554443332222221111 1122477899999999999999987765
Q ss_pred ccc----c-----HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHH
Q 023290 95 RGK----G-----QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVA 165 (284)
Q Consensus 95 ~~k----~-----~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~ 165 (284)
... + ...-++.+ .+.+. .++.+++-... . +.......+..+.+.......++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~l---~~~l~------~~~~li~r~Hp------~---~~~~~~~~~~~~~~~~~~~~~di~ 610 (729)
T 3l7i_A 549 DDEFVSKGKYLFELKIDLDNL---YKELG------DDYVILLRMHY------L---ISNALDLSGYENFAIDVSNYNDVS 610 (729)
T ss_dssp GGGCCGGGSSCCCCTTCHHHH---HHHHT------TTEEEEECCCH------H---HHTTCCCTTCTTTEEECTTCSCHH
T ss_pred CCccccccccccchhhHHHHH---HHHcC------CCeEEEEecCc------c---hhccccccccCCcEEeCCCCcCHH
Confidence 431 1 11112222 23232 56766665442 1 111111112344565555557999
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCC-------CChHHHHHHHHHHh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK-------EGITPLAKNIVKLA 238 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d-------~~~~~~~~~i~~l~ 238 (284)
++|..||++|.-. +.+++|++.+++|||.... ...++. +...|+.++..+ .+.+++.++|....
T Consensus 611 ~ll~~aD~lITDy-------SSv~fD~~~l~kPiif~~~-D~~~Y~-~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~ 681 (729)
T 3l7i_A 611 ELFLISDCLITDY-------SSVMFDYGILKRPQFFFAY-DIDKYD-KGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLD 681 (729)
T ss_dssp HHHHTCSEEEESS-------CTHHHHHGGGCCCEEEECT-TTTTTT-SSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHH
T ss_pred HHHHHhCEEEeec-------hHHHHhHHhhCCCEEEecC-CHHHHh-hccCCcccChhHhCCCCeECCHHHHHHHHhhhh
Confidence 9999999999543 5699999999999997621 112221 111233322211 13788998888776
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 023290 239 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 274 (284)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
...+...+..++-++.... |.-...++++.+.+.+
T Consensus 682 ~~~~~~~~~~~~~~~~~~~-~~dg~as~ri~~~i~~ 716 (729)
T 3l7i_A 682 KVQQQYQEKIDAFYDRFCS-VDNGKASQYIGDLIHK 716 (729)
T ss_dssp HHHHHTHHHHHHHHHHHST-TCCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhCC-ccCChHHHHHHHHHHh
Confidence 5433333322222222221 2333555665555443
No 56
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.11 E-value=1.6e-05 Score=68.92 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=66.6
Q ss_pred CcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecC-CceeeecCCCC
Q 023290 153 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKE 225 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~-~~g~~~~~~d~ 225 (284)
+++.+.++..+ ..++. .+|++|.-. ..++++||+++|+|+|+-...+ +...+.+. +.|+.++..+.
T Consensus 325 ~~~~v~~w~pq-~~vL~h~~~~~fvth~------G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQ-AEVLAHEAVGAFVTHC------GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCH-HHHhcCCcCCEEEecC------CcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 47888888755 46788 677888422 2569999999999999876532 23344455 67887765444
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 023290 226 GITPLAKNIVKLATHVERRLTMGKRGYE 253 (284)
Q Consensus 226 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 253 (284)
+.++++++|.+++.+++ .+++.+++++
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~ 424 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRA 424 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHH
Confidence 58999999999999875 4455555554
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.05 E-value=0.00016 Score=62.36 Aligned_cols=149 Identities=11% Similarity=0.006 Sum_probs=88.3
Q ss_pred CCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHH-HHHHHcCCCCcEEEecc
Q 023290 82 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~-~~~~~~~~~~~v~~~~~ 160 (284)
++..+++..|+.... ..+.+.+.+..+.. .+.+++++-+.. ....+. .+..+ .++++.+.++
T Consensus 272 ~~~vVyvsfGS~~~~-~~~~~~el~~~l~~---------~~~~flw~~~~~-----~~~~lp~~~~~~--~~~~~~vv~w 334 (454)
T 3hbf_A 272 NSSVVYISFGSVVTP-PPHELTALAESLEE---------CGFPFIWSFRGD-----PKEKLPKGFLER--TKTKGKIVAW 334 (454)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHH---------HCCCEEEECCSC-----HHHHSCTTHHHH--TTTTEEEESS
T ss_pred CCceEEEecCCCCcC-CHHHHHHHHHHHHh---------CCCeEEEEeCCc-----chhcCCHhHHhh--cCCceEEEee
Confidence 345666778887653 23444443333322 344555543322 111111 11111 2357888888
Q ss_pred ccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeeecC-CceeeecCCCCChHHHHHHHH
Q 023290 161 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIV 235 (284)
Q Consensus 161 ~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~~~-~~g~~~~~~d~~~~~~~~~i~ 235 (284)
..+ ..++.++++.+.-+. .| -++++||+++|+|+|+-...+ +...+.+. +.|+.++.++.+.+++.++|.
T Consensus 335 ~Pq-~~vL~h~~v~~fvtH---~G-~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~ 409 (454)
T 3hbf_A 335 APQ-VEILKHSSVGVFLTH---SG-WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALE 409 (454)
T ss_dssp CCH-HHHHHSTTEEEEEEC---CC-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHH
T ss_pred CCH-HHHHhhcCcCeEEec---CC-cchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHH
Confidence 754 589999995443343 22 459999999999999876532 23344453 678877765555899999999
Q ss_pred HHhhCHHHHHHHHHHHHH
Q 023290 236 KLATHVERRLTMGKRGYE 253 (284)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~ 253 (284)
+++++++ .+++.+++++
T Consensus 410 ~ll~~~~-~~~~r~~a~~ 426 (454)
T 3hbf_A 410 LTMSSEK-GGIMRQKIVK 426 (454)
T ss_dssp HHHSSHH-HHHHHHHHHH
T ss_pred HHHCCCh-HHHHHHHHHH
Confidence 9998742 3344444443
No 58
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.01 E-value=0.00058 Score=61.98 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=104.3
Q ss_pred HHHHHHh-C--CC-----CCCeEEEEeccccccccHHH-HHHHHHHHHHHHHh------hccC---CCCeEEEEEecCCC
Q 023290 72 EHVRESL-G--VR-----NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKE------KKLE---VPSVHAVIIGSDMN 133 (284)
Q Consensus 72 ~~~r~~~-~--~~-----~~~~~i~~~g~~~~~k~~~~-~~~a~~~l~~~~~~------~~~~---~~~~~l~i~G~~~~ 133 (284)
..+++.. | ++ ++.+.++++-|+..+|...+ ++..+.++.+.... .... ..+.++++.|...|
T Consensus 580 ~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP 659 (879)
T 1ygp_A 580 DLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAP 659 (879)
T ss_dssp HHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCT
T ss_pred HHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCC
Confidence 3345566 5 45 66899999999999999888 67776655432222 1000 25688888888766
Q ss_pred CChHHHHHHHHHHHHc--------CCCC--cEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 134 AQTKFESELRNYVMQK--------KIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 134 ~~~~~~~~l~~~~~~~--------~~~~--~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
.... ...+.+++... .+.+ +|.|++.. .-...++..||+....|....|..|++-+-+|..|.+.|+
T Consensus 660 ~y~~-aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 660 GYYM-AKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp TCHH-HHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred CcHH-HHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 6543 33333333322 2455 68888864 3345578999999988887789999999999999999999
Q ss_pred cCCCCcceeeec--CCceeeecC
Q 023290 202 TAAGGTTEIVVN--GTTGLLHPV 222 (284)
Q Consensus 202 ~~~~~~~e~v~~--~~~g~~~~~ 222 (284)
+-.|..-|+.++ ..|++++-.
T Consensus 739 tlDGanvEi~e~vG~eN~fiFG~ 761 (879)
T 1ygp_A 739 TVDGANVEITREIGEDNVFLFGN 761 (879)
T ss_dssp ESCTHHHHHHHHHCGGGSEEESC
T ss_pred cccchhHHHHHHcCcccEEEccC
Confidence 998888887755 446766653
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.99 E-value=0.00025 Score=61.81 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=87.9
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCC--CCh-HHHHHHHHHHHHcCCCCcEEEec
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN--AQT-KFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~--~~~-~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
...+++..|++.. .....+.+.+..+.. .+.+++++-+... +.. ...+.+.. +. ++++.+.+
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~---------~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~v~~ 359 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLAN---------CKKSFLWIIRPDLVIGGSVIFSSEFTN---EI--ADRGLIAS 359 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHH---------TTCEEEEECCGGGSTTTGGGSCHHHHH---HH--TTTEEEES
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHh---------cCCcEEEEEcCCccccccccCcHhHHH---hc--CCCEEEEe
Confidence 4566777888653 233444444433322 4566666533210 000 01122221 21 35888889
Q ss_pred cccCHHHHHhhccE--EEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceeee-cCCceeeecCCCCChHHHHH
Q 023290 160 KTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 160 ~~~~~~~~~~~ad~--~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v~-~~~~g~~~~~~d~~~~~~~~ 232 (284)
+..+. .+|.++++ +|. . . ..++++||+++|+|+|+-...+ +...+. .-+.|+.++ .+.+.+++.+
T Consensus 360 ~~pq~-~~L~h~~~~~~vt--h---~-G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~ 431 (482)
T 2pq6_A 360 WCPQD-KVLNHPSIGGFLT--H---C-GWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNVKREELAK 431 (482)
T ss_dssp CCCHH-HHHTSTTEEEEEE--C---C-CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHH
T ss_pred ecCHH-HHhcCCCCCEEEe--c---C-CcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHH
Confidence 87555 68877666 553 2 2 2469999999999999986543 223332 456777776 3445899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHH
Q 023290 233 NIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 233 ~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
+|.+++.+++ .+++.+++++.
T Consensus 432 ~i~~ll~~~~-~~~~r~~a~~l 452 (482)
T 2pq6_A 432 LINEVIAGDK-GKKMKQKAMEL 452 (482)
T ss_dssp HHHHHHTSHH-HHHHHHHHHHH
T ss_pred HHHHHHcCCc-HHHHHHHHHHH
Confidence 9999999886 35555555543
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.71 E-value=0.00023 Score=59.20 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=68.9
Q ss_pred HHHHHHHhCCC-CCCeEEEEecc-ccccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHH
Q 023290 71 REHVRESLGVR-NEDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 146 (284)
Q Consensus 71 ~~~~r~~~~~~-~~~~~i~~~g~-~~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~ 146 (284)
...+++.+|+. ++.++++..|. ..+.|.+. .+.+++..+.+ .+++++++|+.. ..+..++..
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~~-----e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeChh-----hHHHHHHHH
Confidence 35567778876 34566677777 44556554 66666665543 467888888643 233333333
Q ss_pred HHcCC--CCcE-EEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 147 MQKKI--QDRV-HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 147 ~~~~~--~~~v-~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+..+- ..++ .+.|.. .++..+++.||++|.+.. | .+-.|.++|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------H-HHHHHHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 32210 1134 455543 688899999999997643 3 333499999999974
No 61
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.70 E-value=0.0014 Score=56.81 Aligned_cols=80 Identities=21% Similarity=0.127 Sum_probs=57.0
Q ss_pred CcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----ccee-eecCCceeee-c---
Q 023290 153 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEI-VVNGTTGLLH-P--- 221 (284)
Q Consensus 153 ~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~-v~~~~~g~~~-~--- 221 (284)
+++.+.++..+. .+|. .+|++|.-. ..++++||+++|+|+|+-...+ +... ++.-+.|+.+ +
T Consensus 332 ~~~~v~~w~pq~-~vL~h~~~~~fvth~------G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~ 404 (463)
T 2acv_A 332 GKGMICGWAPQV-EVLAHKAIGGFVSHC------GWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404 (463)
T ss_dssp CSEEEESSCCHH-HHHHSTTEEEEEECC------CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC
T ss_pred CCEEEEccCCHH-HHhCCCccCeEEecC------CchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC
Confidence 377888887554 5776 677888432 2569999999999999976532 2334 4566678877 2
Q ss_pred CC--CCChHHHHHHHHHHhh
Q 023290 222 VG--KEGITPLAKNIVKLAT 239 (284)
Q Consensus 222 ~~--d~~~~~~~~~i~~l~~ 239 (284)
.+ ..+.+++.++|.++++
T Consensus 405 ~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 405 KGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp TTCCCCCHHHHHHHHHHHTC
T ss_pred CCCccccHHHHHHHHHHHHh
Confidence 23 2348999999999997
No 62
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.68 E-value=0.001 Score=57.86 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=54.7
Q ss_pred EEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC----cceee-ecCCceeeecCC---CCC
Q 023290 155 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG---KEG 226 (284)
Q Consensus 155 v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~----~~e~v-~~~~~g~~~~~~---d~~ 226 (284)
+.+.++.... .+++++++.+.-+. .| -++++||+++|+|+|+-...+ +...+ +.-+.|+.++.. ..+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH---gG-~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH---CG-WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC---CC-HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec---cc-chhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 3444566444 89999996433332 22 359999999999999976542 23343 455677776543 335
Q ss_pred hHHHHHHHHHHhh
Q 023290 227 ITPLAKNIVKLAT 239 (284)
Q Consensus 227 ~~~~~~~i~~l~~ 239 (284)
.++++++|.+++.
T Consensus 416 ~~~l~~av~~vl~ 428 (480)
T 2vch_A 416 REEVARVVKGLME 428 (480)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 8999999999998
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.58 E-value=8.9e-05 Score=57.38 Aligned_cols=73 Identities=7% Similarity=-0.022 Sum_probs=51.8
Q ss_pred cEEEeccccCHHHHHh-hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCc--------ceeeecCCceeeecCCC
Q 023290 154 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGK 224 (284)
Q Consensus 154 ~v~~~~~~~~~~~~~~-~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~--------~e~v~~~~~g~~~~~~d 224 (284)
++...++.+++..+|. .||++|.-+ ...+++|++++|+|.|.-..+.. ...+.+...++.+.
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIsha------GagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~~--- 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVISHA------GTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCA--- 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEESS------CHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEEC---
T ss_pred eEEEeeccchHHHHHHhcCCEEEECC------cHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEcC---
Confidence 5667788899999999 999999533 35799999999999998765421 22333333455553
Q ss_pred CChHHHHHHHHHH
Q 023290 225 EGITPLAKNIVKL 237 (284)
Q Consensus 225 ~~~~~~~~~i~~l 237 (284)
++.++++|.++
T Consensus 186 --~~~L~~~i~~l 196 (224)
T 2jzc_A 186 --PTETGLIAGLR 196 (224)
T ss_dssp --SCTTTHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 56677777665
No 64
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.18 E-value=0.0037 Score=51.96 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHHHhCCCCC-CeEEEEeccccccccH--HHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHH
Q 023290 72 EHVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 148 (284)
Q Consensus 72 ~~~r~~~~~~~~-~~~i~~~g~~~~~k~~--~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 148 (284)
..+.++.|+.++ +++++.+|.-.+.|.+ +.+.+.+..+.+ .+.+++++|+.. ..+..++..+.
T Consensus 173 ~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~~-----e~~~~~~i~~~ 238 (349)
T 3tov_A 173 QEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGPM-----DLEMVQPVVEQ 238 (349)
T ss_dssp HHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCTT-----THHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCcc-----hHHHHHHHHHh
Confidence 334456677644 4566667765555554 455555555543 356778887643 33444455554
Q ss_pred cCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 149 KKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 149 ~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.+. ..+.+.|.. .++..+++.||++|.+-. |..-+ |.++|+|+|+--
T Consensus 239 ~~~-~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 239 MET-KPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CSS-CCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEEEC
T ss_pred ccc-ccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEEEE
Confidence 431 234555543 678899999999997532 33333 999999999853
No 65
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.47 E-value=0.016 Score=47.51 Aligned_cols=136 Identities=11% Similarity=0.056 Sum_probs=72.8
Q ss_pred CCCeEEEEeccccccccHH--HHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec
Q 023290 82 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 82 ~~~~~i~~~g~~~~~k~~~--~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
+++.+++..|.-.+.|... .+.+.+..+.+ .++++++.++++ ...+..++..+.. + ++.+.|
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~~g~~----~e~~~~~~i~~~~--~-~~~l~g 240 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLAD---------SGIRIKLPWGAP----HEEERAKRLAEGF--A-YVEVLP 240 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT---------TCCEEEECCSSH----HHHHHHHHHHTTC--T-TEEECC
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHH---------CCCcEEEecCCH----HHHHHHHHHHhhC--C-cccccC
Confidence 3456667777665566554 44444444322 467888863332 1223333333322 2 455566
Q ss_pred cc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeeec-CCceeeec-----CCCCChHHHH
Q 023290 160 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-GTTGLLHP-----VGKEGITPLA 231 (284)
Q Consensus 160 ~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~~-~~~g~~~~-----~~d~~~~~~~ 231 (284)
.. .++..+++.||++|.+-. |..=+ |.|+|+|+|+--.+........ +.....+. -.+.+++++.
T Consensus 241 ~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~ 313 (326)
T 2gt1_A 241 KMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVK 313 (326)
T ss_dssp CCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHH
T ss_pred CCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHH
Confidence 53 688899999999997632 33334 7789999997521111111000 11111111 0112388888
Q ss_pred HHHHHHhhC
Q 023290 232 KNIVKLATH 240 (284)
Q Consensus 232 ~~i~~l~~~ 240 (284)
+++.+++++
T Consensus 314 ~~i~~~l~~ 322 (326)
T 2gt1_A 314 QFIEENAEK 322 (326)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHHH
Confidence 888888764
No 66
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=88.75 E-value=4.3 Score=27.86 Aligned_cols=112 Identities=12% Similarity=0.168 Sum_probs=69.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...+++++.+.. .....+.......+....+.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhccc
Confidence 456777777643 356677777777765433554444444444443 46888875431 33345666766653
Q ss_pred --CCCEEEcCCCCc----ceeeecCCceeeecCC-CCChHHHHHHHHHHhh
Q 023290 196 --QLPVLGTAAGGT----TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 --G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~ 239 (284)
++|+|....... .+.++.|..+++..|. + .+++.++|..+++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 678886433222 2344567889999998 7 9999999988765
No 67
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=87.20 E-value=5.4 Score=27.25 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=66.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh----hccEEEEcCCCCcCccchhHHHHHh---c
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA---F 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~----~ad~~~~ps~~~~e~~~~~~~Eama---~ 195 (284)
.+++++.+.. .....+.......+. .+.......+....+. ..|++++-... .+.-|..+++.+. -
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 4566666543 356667777777653 3444443344444444 57888765431 2333455554443 3
Q ss_pred CCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 196 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 196 G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
.+|+|... ... ..+.++.|..+++..|.+ .+++..+|..++...
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRK 124 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHH
Confidence 67777543 222 234456678899999988 999999999887643
No 68
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=87.11 E-value=5.2 Score=27.00 Aligned_cols=110 Identities=9% Similarity=0.094 Sum_probs=66.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---------hccEEEEcCCCCcCccchhHHHHH
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
.++.++.+.. .....+.......+....|.......+....+. ..|++++-... .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 3566666543 356667777777665334555554455555554 47888875431 223345566555
Q ss_pred h-----cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 194 A-----FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 194 a-----~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
. ..+|+|...... ..+..+.|..+++..|.+ .+++...|..++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 4 467877543222 233445577889999888 9999999988764
No 69
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=86.62 E-value=6.2 Score=27.35 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=67.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH-----------hhccEEEEcCCCCcCccchhHH
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-----------AAIDVLVQNSQAWGECFGRITI 190 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-----------~~ad~~~~ps~~~~e~~~~~~~ 190 (284)
..+++++.+.. .....++......+....|.......+....+ ...|++++-..- .+.-|..++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 35667776543 35677777788777644565555444554554 246888765431 233455666
Q ss_pred HHHhc-----CCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 191 EAMAF-----QLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 191 Eama~-----G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+.+.. ++|+|....... .+.++.|..+++..|.+ ++++..+|..+.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 66543 677775432222 23445678899999988 999999988773
No 70
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=86.47 E-value=5.4 Score=27.41 Aligned_cols=111 Identities=7% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...+++++.+... ....+.......|. .|.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 7 ~~~~iLivd~~~~----~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQLP----ALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTGG----GGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCHH----HHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 4677788876542 45666666666554 4444443344444443 47888865431 23345666766653
Q ss_pred --CCCEEEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 --QLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 --G~Pvi~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|.. ..... .+.++.|..+++..+.+ .+++...|..++..
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLKL 128 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHHH
Confidence 6787754 33221 23345678899999988 99999999888763
No 71
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=84.27 E-value=14 Score=30.38 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++.+.+.. .+..+.++++++++..+... .++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 29 ~~~~lv~v~d~~------~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 97 (362)
T 1ydw_A 29 PNATISGVASRS------LEKAKAFATANNYPESTKIH---GSYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKH 97 (362)
T ss_dssp TTEEEEEEECSS------HHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCE
T ss_pred CCcEEEEEEcCC------HHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHCCCe
Confidence 677776555432 34566777777753222222 47777886 5899998776 33334456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 98 V~~EK 102 (362)
T 1ydw_A 98 ILLEK 102 (362)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99853
No 72
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=83.16 E-value=8.8 Score=26.18 Aligned_cols=112 Identities=8% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh------------hccEEEEcCCCCcCccchh
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA------------AIDVLVQNSQAWGECFGRI 188 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~------------~ad~~~~ps~~~~e~~~~~ 188 (284)
...++.++.+.. .....+.......+....|.......+....+. ..|++++-... .+.-|..
T Consensus 5 ~~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~ 79 (149)
T 1k66_A 5 ATQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGRE 79 (149)
T ss_dssp TTSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHH
T ss_pred CCccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHH
Confidence 345667776543 356667777777665334555554445555554 46888865431 2333556
Q ss_pred HHHHHh-----cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 189 TIEAMA-----FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 189 ~~Eama-----~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+++.+. ..+|+|...... .....+.|..+++..|.+ .+++...|..++.
T Consensus 80 ~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 80 VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 666664 457777543222 223445677889999887 9999999988764
No 73
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=83.12 E-value=7.4 Score=31.76 Aligned_cols=69 Identities=14% Similarity=0.011 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+.+. ..+..+.++++++++. + ..++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 47 ~~~~lvav~d~------~~~~a~~~a~~~g~~~-~-----y~d~~ell~~~~iDaV~I~tP--~~~H~~~~~~al~aGkh 112 (350)
T 4had_A 47 ENCVVTAIASR------DLTRAREMADRFSVPH-A-----FGSYEEMLASDVIDAVYIPLP--TSQHIEWSIKAADAGKH 112 (350)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ESSHHHHHHCSSCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEECC------CHHHHHHHHHHcCCCe-e-----eCCHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHhcCCE
Confidence 78888866654 2466777888887641 1 2578888864 688888776 33333467789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 113 Vl~EK 117 (350)
T 4had_A 113 VVCEK 117 (350)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99853
No 74
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=82.12 E-value=9.5 Score=25.85 Aligned_cols=110 Identities=9% Similarity=0.000 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...+++++.+.. .....+.......+. .|......++....+. ..|++++-... .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 456777776643 356667777777654 3544444344444443 35787765431 23335566666543
Q ss_pred --CCCEEEc-CCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 196 --QLPVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 --G~Pvi~~-~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|+|.. ... ...+.++.|..+++..+.+ .+++...|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 5677743 222 2233445567788888887 9999999988764
No 75
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=82.03 E-value=9.5 Score=25.74 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=60.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--c-
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~- 195 (284)
...+++++.+.. .....+.......|. .|.......+....+. ..|++++|. .. |..+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~~---~~--g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSD---KN--ALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEECS---TT--HHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEcC---cc--HHHHHHHHHhcCC
Confidence 455666666532 245556666665543 3443333333333333 357877332 22 445554443 3
Q ss_pred CCCEEEcC-CCC---cceeeecCCceeeecCC-CCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|... ... ....++.|..+++..+. + .+++..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 67777543 222 23344567788999987 8 99999999888753
No 76
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=81.97 E-value=9.8 Score=25.86 Aligned_cols=115 Identities=8% Similarity=-0.053 Sum_probs=67.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh-------ccEEEEcCCCCcCccchhHHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
...+++++.+.. .....+.......+....|.......+....+.. .|++++-..- .+.-|..+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 445677776643 2456666667665542234444444455555544 7888875431 333455566554
Q ss_pred h-------cCCCEEEcCCCCc----ceeeecC-CceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 194 A-------FQLPVLGTAAGGT----TEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 194 a-------~G~Pvi~~~~~~~----~e~v~~~-~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
. ...|+|....... ......+ ..+++..|-+ .+++..+|........
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEGH 141 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC--
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhcc
Confidence 3 3677775433322 2233445 7789999988 9999999998877543
No 77
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=81.92 E-value=7.7 Score=29.70 Aligned_cols=81 Identities=6% Similarity=0.015 Sum_probs=50.1
Q ss_pred CCeEEEEEecCC--CCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCC-------C-cCccchhHH
Q 023290 121 PSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------W-GECFGRITI 190 (284)
Q Consensus 121 ~~~~l~i~G~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~-------~-~e~~~~~~~ 190 (284)
...++.++..+. .+...+...+.+..+++|. .+..+...++..+.+..||.+++|.-. + ..++--.+-
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~ 107 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMA 107 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSCHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEeccccHHHHHhcCCEEEECCCcHHHHHHHHHHCChHHHHH
Confidence 345677776542 2222356666777777775 454444335666889999999998621 0 011223455
Q ss_pred HHHhcCCCEEEcC
Q 023290 191 EAMAFQLPVLGTA 203 (284)
Q Consensus 191 Eama~G~Pvi~~~ 203 (284)
|+...|+|++.+.
T Consensus 108 ~~~~~G~p~~G~s 120 (229)
T 1fy2_A 108 DRVKRGALYIGWS 120 (229)
T ss_dssp HHHHTTCEEEEET
T ss_pred HHHHcCCEEEEEC
Confidence 7778899999874
No 78
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=81.67 E-value=10 Score=25.80 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=66.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---hccEEEEcCCCCcC-ccchhHHHHHh--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA-- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---~ad~~~~ps~~~~e-~~~~~~~Eama-- 194 (284)
...++.++.+.. .....+.......|. .|.......+....+. ..|++++-..- .+ .-|..+++.+.
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 4 KDKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQI 76 (140)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhC
Confidence 345677776643 356677777777664 3444433344444443 46888875441 22 33455555443
Q ss_pred cCCCEEEcCC-C---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 195 FQLPVLGTAA-G---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 195 ~G~Pvi~~~~-~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
-.+|+|.... . ...+....|..+++..|.+ ++++..+|..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALRL 124 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHHH
Confidence 4788875422 2 2234455577889999988 99999999888753
No 79
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=81.30 E-value=18 Score=29.28 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+.. .+..+..+++++++. ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~~------~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 93 (330)
T 3e9m_A 28 AQAEVRGIASRR------LENAQKMAKELAIPV------AYGSYEELCKDETIDIIYIPTY--NQGHYSAAKLALSQGKP 93 (330)
T ss_dssp SSEEEEEEBCSS------SHHHHHHHHHTTCCC------CBSSHHHHHHCTTCSEEEECCC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHcCCCc------eeCCHHHHhcCCCCCEEEEcCC--CHHHHHHHHHHHHCCCe
Confidence 677777554432 245666777776531 2368888887 7899988776 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 94 vl~EK 98 (330)
T 3e9m_A 94 VLLEK 98 (330)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99854
No 80
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=81.30 E-value=1.7 Score=32.54 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHhhccEEEEcCCCCcCccch--hHHHHHhcCCCEEEcCCCC-cce----------eeecCCceeeecCCCCChHHHHH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGR--ITIEAMAFQLPVLGTAAGG-TTE----------IVVNGTTGLLHPVGKEGITPLAK 232 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~--~~~Eama~G~Pvi~~~~~~-~~e----------~v~~~~~g~~~~~~d~~~~~~~~ 232 (284)
-+...||++|... .++|. .+.||+..|+||++-+..+ ... ++.......+.-.+| ++++.+
T Consensus 114 ~m~~~sda~Ivlp----GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~--~ee~~~ 187 (195)
T 1rcu_A 114 VLLRNADVVVSIG----GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWT--VEEAVQ 187 (195)
T ss_dssp HHHTTCSEEEEES----CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESS--HHHHHH
T ss_pred HHHHhCCEEEEec----CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCC--HHHHHH
Confidence 4567899987543 23442 5779999999999986433 222 222222222333333 888887
Q ss_pred HHHHH
Q 023290 233 NIVKL 237 (284)
Q Consensus 233 ~i~~l 237 (284)
.|.++
T Consensus 188 ~l~~~ 192 (195)
T 1rcu_A 188 IIEQI 192 (195)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 77654
No 81
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=81.13 E-value=12 Score=26.16 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=41.6
Q ss_pred hccEEEEcCCCCcCccchhHHHHH---hcCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAM---AFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eam---a~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|++++-... .+.-|..+++.+ ...+|||...... ..+.++.|..+++..+.+ .+++.++|..++.
T Consensus 83 ~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 83 NIDIVTLXITM-PKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLD--RAKVLQRVMSVFV 156 (157)
T ss_dssp GCCEEEECSSC-SSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTTC
T ss_pred CCCEEEEeccC-CCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 34777765431 223344555444 3467887543322 223445678889999988 9999999988764
No 82
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=81.09 E-value=5.6 Score=32.93 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
+++.|+.+|--.-.+.+ ++++..+...+. ..++++++-+-+.. .+..+..+++++++. + ..
T Consensus 24 kkirvgiIG~G~ig~~H---~~a~~~~~~~~~----~~~~~~lvav~d~~------~~~a~~~a~~~g~~~-~-----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCH---ALAWNAVKTVFG----DVERPRLVHLAEAN------AGLAEARAGEFGFEK-A-----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHHHH---HHHHTTHHHHHC----SSCCCEEEEEECC--------TTHHHHHHHHTCSE-E-----ES
T ss_pred CCccEEEEcCCHHHHHH---HHHHHhhhhhhc----cCCCcEEEEEECCC------HHHHHHHHHHhCCCe-e-----cC
Confidence 45677777743222322 334433332222 23677887666643 345667777777641 1 25
Q ss_pred CHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 163 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 163 ~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 85 d~~ell~~~~iDaV~IatP--~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTP--NQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp CHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCcEEEECCC--hHHHHHHHHHHHhcCCeEEEcc
Confidence 7888886 4688887776 3333446788999999999864
No 83
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=80.73 E-value=9.2 Score=25.94 Aligned_cols=111 Identities=8% Similarity=-0.001 Sum_probs=66.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEeccccCHHHHHh---hccEEEEcCCCCc-CccchhHHHHHh--
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWG-ECFGRITIEAMA-- 194 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~---~ad~~~~ps~~~~-e~~~~~~~Eama-- 194 (284)
..+++++.+.. .....++..... .+. .|.......+....+. ..|++++-... . +.-|..+++.+.
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFE----YEREKTKIIFDNIGEY--DFIEVENLKKFYSIFKDLDSITLIIMDIAF-PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHHCCC--EEEEECSHHHHHTTTTTCCCCSEEEECSCS-SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhccCc--cEEEECCHHHHHHHHhcCCCCcEEEEeCCC-CCCCcHHHHHHHHHhC
Confidence 45667776543 255667777776 554 3444333334444443 47888876541 2 223455555543
Q ss_pred ---cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 195 ---FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 195 ---~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
..+|+|...... ..+.++.|..+++..|.+ .+++..+|..++...
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYP--TKRLENSVRSVLKIC 128 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCC--TTHHHHHHHHHHCC-
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHhc
Confidence 478888543322 223445678899999988 899999999988754
No 84
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=80.19 E-value=9.3 Score=29.27 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=50.6
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHH----HHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYV----MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM- 193 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~----~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam- 193 (284)
.++++.+.++|.|..-.++..+...... +++ ..|++|+-|.+..-..|...=|.+
T Consensus 29 dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~--------------------~pDfvI~isPN~a~PGP~~ARE~l~ 88 (283)
T 1qv9_A 29 DREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDF--------------------EPDFIVYGGPNPAAPGPSKAREMLA 88 (283)
T ss_dssp CCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--------------------CCSEEEEECSCTTSHHHHHHHHHHH
T ss_pred ccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhc--------------------CCCEEEEECCCCCCCCchHHHHHHH
Confidence 5589999999998755444333322222 222 345555544421344456677877
Q ss_pred hcCCCEEE-cCCCCc--ceeeecCCceeeecCCC
Q 023290 194 AFQLPVLG-TAAGGT--TEIVVNGTTGLLHPVGK 224 (284)
Q Consensus 194 a~G~Pvi~-~~~~~~--~e~v~~~~~g~~~~~~d 224 (284)
+.|+|+|+ +|.++. .+-+++..-|+++-..|
T Consensus 89 ~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 89 DSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp TSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTS
T ss_pred hCCCCEEEEcCCcchhhHHHHHhcCCcEEEEecC
Confidence 57999884 555543 34445566787766654
No 85
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=79.89 E-value=4.8 Score=31.82 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=34.4
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 208 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~ 208 (284)
.++.+++..+|++|..+. .+..--.+..++..|+|+|+...|...
T Consensus 65 ~dl~~ll~~~DVVIDfT~--p~a~~~~~~~al~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL--PEGTLVHLDAALRHDVKLVIGTTGFSE 109 (272)
T ss_dssp CCHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 678888899999998776 444444566789999999997766543
No 86
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=78.35 E-value=11 Score=24.24 Aligned_cols=107 Identities=8% Similarity=0.065 Sum_probs=60.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----cC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 196 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~G 196 (284)
+++++.+.. .....+.......|. .+.......+....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~iliv~~~~----~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 3 HILLLEEED----EAATVVCEMLTAAGF--KVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSS
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCC
Confidence 455555532 245666666666554 3444443333333332 46887765431 2233456666654 46
Q ss_pred CCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|+|.. ......+....|..+++..|.+ .+++...|..++.
T Consensus 76 ~~ii~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~ 117 (119)
T 2j48_A 76 PPLVLFLGEPPVDPLLTAQASAILSKPLD--PQLLLTTLQGLCP 117 (119)
T ss_dssp CCCEEEESSCCSSHHHHHHCSEECSSCST--THHHHHHHHTTCC
T ss_pred CCEEEEeCCCCchhhhhcCHHHhccCCCC--HHHHHHHHHHHhc
Confidence 777743 2222224555677788888877 8899988877653
No 87
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=78.23 E-value=13 Score=25.07 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=66.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...+++++.+.. .....+.....+.|. .|.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 5 ~~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 77 (140)
T 3grc_A 5 PRPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSR 77 (140)
T ss_dssp CCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGG
T ss_pred CCCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCcc
Confidence 345666766543 255666677776654 3444443334434432 45888775431 33345566666543
Q ss_pred --CCCEEEcCCCC----cc-eeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 196 --QLPVLGTAAGG----TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 --G~Pvi~~~~~~----~~-e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|+|...... .. ...+.|..+++..|.+ .+++..+|..+++
T Consensus 78 ~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~ 126 (140)
T 3grc_A 78 TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAID 126 (140)
T ss_dssp GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 67888654322 12 4455677889999988 9999999998875
No 88
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=77.38 E-value=15 Score=25.40 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=66.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh----
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---- 194 (284)
...++.++.+.. .....+.......|. .|.......+....+. ..|++++-... .+.-|..+++.+.
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (154)
T 3gt7_A 6 RAGEILIVEDSP----TQAEHLKHILEETGY--QTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPD 78 (154)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCC
Confidence 456777776643 256667777776654 3444433334444443 46888765431 2334556666654
Q ss_pred -cCCCEEEcCC-CC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 -FQLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 -~G~Pvi~~~~-~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|+|.... .. ..+.++.|..+++..|.+ .+++..+|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLECGADDFITKPCK--DVVLASHVKRLLS 126 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 4678875432 22 223445678899999988 9999999998875
No 89
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=77.30 E-value=15 Score=25.34 Aligned_cols=111 Identities=9% Similarity=0.121 Sum_probs=63.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHH---hcC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAM---AFQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eam---a~G 196 (284)
..+++++.+.. .....+.......|. .|.......+....+ ...|++++-... .+.-|..+++.+ ...
T Consensus 3 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCC
Confidence 34566666543 255666677776654 344333323333333 246888765431 222344555544 347
Q ss_pred CCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 197 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 197 ~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
+|+|...... ....+..|..+++..|.+ .+++...|..++...
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKR 122 (155)
T ss_dssp SCEEEEECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHH
Confidence 8887543222 233445677899999888 999999999887643
No 90
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=76.95 E-value=15 Score=25.21 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh---c
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA---F 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama---~ 195 (284)
...+++++.+.. .....+.....+.+....|.......+....+ ...|++++-... .+.-|..+++.+. .
T Consensus 14 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHP----LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSH----HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCH----HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 566777776643 24556666666654211232233323333333 346887765431 2333555555543 3
Q ss_pred CCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+|||... ... ..+.++.|..+++..+.+ .+++.++|..++..
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDST--RTEIVKAVLDCAKG 135 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCC--HHHHHHHHHHHHcC
Confidence 56777543 222 223455688899999988 99999999998874
No 91
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=76.84 E-value=15 Score=24.85 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=62.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc--CC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QL 197 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--G~ 197 (284)
..++.++.+.. .....+.......+. .|.......+....+. ..|++++-... .+.-|..+++.+.. .+
T Consensus 4 ~~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDK----DNCQKLKGFLEEKGI--SIDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCKKIRNVTTC 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHccCCCC
Confidence 45667776643 245566666665543 3443333233333333 35887764320 22234556655532 57
Q ss_pred CEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 198 PVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 198 Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
|+|... ... ..+.++.|..+++..|.+ ++++..+|..++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIVYMTYINEDQSILNALNSGGDDYLIKPLN--LEILYAKVKAILR 120 (136)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHH
Confidence 777543 222 233445678899999988 9999999988764
No 92
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=76.64 E-value=16 Score=25.13 Aligned_cols=111 Identities=10% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---------hccEEEEcCCCCcCccchhHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIE 191 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~ad~~~~ps~~~~e~~~~~~~E 191 (284)
...++.++.+.. .....++......+....|.......+....+. ..|++++-..- .+.-|..+++
T Consensus 7 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCeEEEEECCH----HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CCCcHHHHHH
Confidence 456677776643 245556666665543223433333334444444 46888865431 2223455666
Q ss_pred HHh-----cCCCEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 192 AMA-----FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 192 ama-----~G~Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.+. ..+|+|.. .... ..+.++.|..+++..|.+ .+++..+|..+.
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~ 135 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIE 135 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHH
Confidence 654 35677754 3222 233445678899999988 899998887764
No 93
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=76.19 E-value=16 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=42.7
Q ss_pred hccEEEEcCCCCcCccchhHHHHHh---cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..|++++-... .+.-|..+++.+. ..+|+|...... ..+.++.|..+++..+.+ .+++..+|..++..
T Consensus 66 ~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 66 SVDIAILDVEM-PVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERS--IADLMQTLHTVLEG 140 (150)
T ss_dssp CCSEEEECSSC-SSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHcC
Confidence 35777765431 2333455555543 357777543222 233455678899999988 99999999988763
No 94
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=75.81 E-value=8.1 Score=30.68 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=50.5
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee-----------------c-CCce-----ee
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV-----------------N-GTTG-----LL 219 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~-----------------~-~~~g-----~~ 219 (284)
.-..-++.||++|..... .|+|-..+++++.....+++....++.-+-. + ...| ++
T Consensus 41 ~d~~~l~~Adlvv~~G~~-~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~W 119 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPE-MEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLW 119 (284)
T ss_dssp THHHHHHHCSEEEECCTT-TCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGG
T ss_pred HHHHHHHcCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCccc
Confidence 344568999999987753 6777777887665433344432222211100 0 0011 23
Q ss_pred ecCCCCChHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 220 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 220 ~~~~d~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
.++.+ ...+++.|.+.+. ||+......+|+.++..+
T Consensus 120 ldp~~--~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 157 (284)
T 2prs_A 120 LSPEI--ARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ 157 (284)
T ss_dssp GCHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 33333 5566777766655 777666666666665543
No 95
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=75.52 E-value=15 Score=24.40 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=65.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH-h--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-A--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
..++.++.+.. .....++...++.|.. .+.......+....+ . ..|++++-..- .+.-|..+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 35566776543 3566777777777653 244333322333333 2 46888764331 23335667766643
Q ss_pred --CCCEEEcCC-CCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 196 --QLPVLGTAA-GGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 --G~Pvi~~~~-~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|+|.... ... .+.++.|..+++..|-+ ++++..+|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLG 126 (129)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhc
Confidence 578875432 222 23445688899999988 9999999988875
No 96
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=75.30 E-value=8.9 Score=31.78 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 140 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 140 ~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
+..+..+++++++. ...++.+++.. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 57 ~~a~~~a~~~~~~~------~~~~~~~ll~~~~iD~V~i~tp--~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 57 EKVEALAKRFNIAR------WTTDLDAALADKNDTMFFDAAT--TQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp HHHHHHHHHTTCCC------EESCHHHHHHCSSCCEEEECSC--SSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHhCCCc------ccCCHHHHhcCCCCCEEEECCC--chHHHHHHHHHHHCCCeEEEcC
Confidence 55667777777641 12578888876 788887765 3333446789999999999753
No 97
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=74.51 E-value=17 Score=28.15 Aligned_cols=78 Identities=8% Similarity=0.030 Sum_probs=44.9
Q ss_pred EEEEEec-CCCCChHHHHHHHHHHHHc-CCCCcEEEeccccCHHHHHh-hccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 124 HAVIIGS-DMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 124 ~l~i~G~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~-~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
++.++|. |. .-..+.+.+.+. +. .-+-.....+++..++. .+|++|-.+. .+..--.+..++..|+|+|
T Consensus 2 kV~V~Ga~G~-----mG~~i~~~~~~~~~~-elva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 2 RVGVLGAKGK-----VGTTMVRAVAAADDL-TLSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp EEEEETTTSH-----HHHHHHHHHHHCTTC-EEEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCH-----HHHHHHHHHHhCCCC-EEEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHHcCCCEE
Confidence 5667774 43 445555555432 21 11223333356666665 7999996665 4544334556788899999
Q ss_pred EcCCCCcce
Q 023290 201 GTAAGGTTE 209 (284)
Q Consensus 201 ~~~~~~~~e 209 (284)
+...|...+
T Consensus 74 igTTG~~~e 82 (245)
T 1p9l_A 74 VGTTGFTAE 82 (245)
T ss_dssp ECCCCCCHH
T ss_pred EcCCCCCHH
Confidence 876654333
No 98
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=74.19 E-value=28 Score=28.53 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=46.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+-+.. .+..+..+++++... ...++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 49 ~~~~lvav~d~~------~~~a~~~a~~~~~~~------~~~~~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkh 114 (361)
T 3u3x_A 49 AGARLAGFHEKD------DALAAEFSAVYADAR------RIATAEEILEDENIGLIVSAAV--SSERAELAIRAMQHGKD 114 (361)
T ss_dssp TTCEEEEEECSC------HHHHHHHHHHSSSCC------EESCHHHHHTCTTCCEEEECCC--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCe
Confidence 778887666542 456667777775321 12578888875 899888775 33333457789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 115 Vl~EK 119 (361)
T 3u3x_A 115 VLVDK 119 (361)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99854
No 99
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=74.14 E-value=15 Score=29.80 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=51.4
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCccee-eecC------CceeeecCCCCChHHHHHHHHHHh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VVNG------TTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~-v~~~------~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.-++.||++|..... .|+|--.++++.. +.++|....+ +.-. ..++ .-=++.++.+ ...+++.|.+.+
T Consensus 90 ~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~L 164 (321)
T 1xvl_A 90 VKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQAF 164 (321)
T ss_dssp HHHHTCSEEEECCTT-SSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHH--HHHHHHHHHHHH
T ss_pred HHHhcCCEEEECCCC-hHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHH--HHHHHHHHHHHH
Confidence 458899999987753 6777777888766 6676654332 2111 0000 0112344333 566777777666
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 023290 239 T--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 239 ~--~~~~~~~~~~~~~~~~~~ 257 (284)
. ||+......+|+.++..+
T Consensus 165 ~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 165 VELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHCcccHHHHHHHHHHHHHH
Confidence 5 777766666676665543
No 100
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=72.42 E-value=12 Score=31.46 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=61.0
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
+++.|+.+|--...+ ..++++.++...... -.++++++-+.+. ..+..++.+++++.+. + ..
T Consensus 25 ~klrvgiIG~G~ig~---~h~~~~~~~~~~~~~---~~~~~elvav~d~------~~~~a~~~a~~~~~~~-~-----y~ 86 (412)
T 4gqa_A 25 ARLNIGLIGSGFMGQ---AHADAYRRAAMFYPD---LPKRPHLYALADQ------DQAMAERHAAKLGAEK-A-----YG 86 (412)
T ss_dssp CEEEEEEECCSHHHH---HHHHHHHHHHHHCTT---SSSEEEEEEEECS------SHHHHHHHHHHHTCSE-E-----ES
T ss_pred ccceEEEEcCcHHHH---HHHHHHHhccccccc---cCCCeEEEEEEcC------CHHHHHHHHHHcCCCe-E-----EC
Confidence 567888888432222 344555544321111 0135666655553 3466777888887641 1 25
Q ss_pred CHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 163 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 163 ~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
++.+++. ..|++++.+. ...-.-.+.+|+..|++|++-.
T Consensus 87 d~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 87 DWRELVNDPQVDVVDITSP--NHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHcCCCeEeec
Confidence 7778886 5788887775 3333446889999999999864
No 101
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=72.34 E-value=13 Score=30.69 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=45.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCE
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 199 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pv 199 (284)
+..++-+.+. ..+..+..+++++++ .+ ..++.+++. ..|++++.+. ...-.-.+.+|+..|++|
T Consensus 37 ~~~l~av~d~------~~~~a~~~a~~~g~~-~~-----~~d~~~ll~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhV 102 (390)
T 4h3v_A 37 HPDLNVLCGR------DAEAVRAAAGKLGWS-TT-----ETDWRTLLERDDVQLVDVCTP--GDSHAEIAIAALEAGKHV 102 (390)
T ss_dssp EEEEEEEECS------SHHHHHHHHHHHTCS-EE-----ESCHHHHTTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CceEEEEEcC------CHHHHHHHHHHcCCC-cc-----cCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCCc
Confidence 3466655553 346677788888764 11 257778885 4788888776 333344678899999999
Q ss_pred EEcC
Q 023290 200 LGTA 203 (284)
Q Consensus 200 i~~~ 203 (284)
++-.
T Consensus 103 l~EK 106 (390)
T 4h3v_A 103 LCEK 106 (390)
T ss_dssp EEES
T ss_pred eeec
Confidence 9864
No 102
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=72.07 E-value=26 Score=29.07 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+-+.. .+..++.+++++++ ...++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~~------~~~~~~~a~~~g~~-------~~~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGk~ 90 (387)
T 3moi_A 26 PDAQIVAACDPN------EDVRERFGKEYGIP-------VFATLAEMMQHVQMDAVYIASP--HQFHCEHVVQASEQGLH 90 (387)
T ss_dssp TTEEEEEEECSC------HHHHHHHHHHHTCC-------EESSHHHHHHHSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeCC------HHHHHHHHHHcCCC-------eECCHHHHHcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCc
Confidence 677777655532 34556666776653 12577888875 899998776 33333467789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 91 Vl~EK 95 (387)
T 3moi_A 91 IIVEK 95 (387)
T ss_dssp EEECS
T ss_pred eeeeC
Confidence 99864
No 103
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=71.61 E-value=20 Score=24.13 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=66.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--------hccEEEEcCCCCcCccchhHHHHH
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--------AIDVLVQNSQAWGECFGRITIEAM 193 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~ad~~~~ps~~~~e~~~~~~~Eam 193 (284)
..+++++.+.. .....+.......+....|.......+....+. ..|++++-... .+.-|..+++.+
T Consensus 7 ~~~ILivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDE----VDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCH----HHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSCHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 45567776643 356677777777765435665555455555554 37888865431 222355666665
Q ss_pred h-----cCCCEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 194 A-----FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 194 a-----~G~Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
. ..+|+|.. .... ..+..+.|..+++..|.+ ++++.+++....
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~~~~~~ 133 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLD--YGEAIKLFWILQ 133 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCC--HHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHH
Confidence 4 46777754 3222 233445677889999988 899988866543
No 104
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=71.29 E-value=7.6 Score=30.95 Aligned_cols=45 Identities=11% Similarity=-0.092 Sum_probs=33.5
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcc
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 208 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~ 208 (284)
.++.+++..+|++|..+. .+..--.+..++..|+|+|+..+|...
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 588888899999997776 444333455788999999997766533
No 105
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=71.09 E-value=12 Score=25.45 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=59.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcC-CCCcEEEeccc-cCHHHHH---hhccEEEEcCCCCcCccchhHHHHHh-
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT-LTVAPYL---AAIDVLVQNSQAWGECFGRITIEAMA- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~-~~~~~~~---~~ad~~~~ps~~~~e~~~~~~~Eama- 194 (284)
+..+++|+.+.. .....+.......+ . .+...... +.+..+. ...|++++-... .+.-|..+++.+.
T Consensus 19 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 19 GMINILVASEDA----SRLAHLARLVGDAGRY--RVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAELAAIEKLSR 91 (146)
T ss_dssp GGCEEEEECSCH----HHHHHHHHHHHHHCSC--EEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHhhCCCe--EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHHHHHHHHHH
Confidence 344556665432 24455555555554 2 23222221 1222222 356888765431 2223445554443
Q ss_pred --cCCCEEEcCC-CC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 --FQLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 --~G~Pvi~~~~-~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
-.+|+|.... .. ..+.++.|..+++..|.+ ++++..+|..++.
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 140 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLE--PRALDDALKRAAA 140 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCC--HHHHHHHHHHHHh
Confidence 3677775432 22 223445677789999888 9999999988875
No 106
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=70.93 E-value=19 Score=28.99 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=49.0
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhc-CCCEEEcCCCCccee--eec-------C--------CceeeecCCCCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI--VVN-------G--------TTGLLHPVGKEG 226 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-G~Pvi~~~~~~~~e~--v~~-------~--------~~g~~~~~~d~~ 226 (284)
..-++.||++|..... .|+|--.+++++.. ++++|.... ++.-+ -.+ + .-=++.++.+
T Consensus 65 ~~~l~~ADlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n-- 140 (312)
T 2o1e_A 65 IANIQDADLFVYNSEY-METWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL-- 140 (312)
T ss_dssp HHHHHHSSEEEESCTT-TSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH--
T ss_pred HHHHhcCCEEEEcCCC-hHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH--
Confidence 3458899999987653 67777778777653 345554322 21110 000 0 0013333333
Q ss_pred hHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 227 ~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
...+++.|.+.+. ||+......+|+.++..+
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 5566777766655 777666666666665543
No 107
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=70.68 E-value=14 Score=29.50 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-------ccCHHHHHhhccEEEEcCCC------CcCccc-
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA------WGECFG- 186 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~ad~~~~ps~~------~~e~~~- 186 (284)
++.++.++.........+.+.+.+..+++|.. .|..+.- .+++.+.+..||+++++.-. .+...+
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCH
Confidence 45677888765444445777888888888874 4544432 13557789999999987521 011122
Q ss_pred -hhHHHHHhcC-CCEEEcCCC
Q 023290 187 -RITIEAMAFQ-LPVLGTAAG 205 (284)
Q Consensus 187 -~~~~Eama~G-~Pvi~~~~~ 205 (284)
-.+-|+...| +|++.+..|
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeCHH
Confidence 2455777889 888876543
No 108
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=70.58 E-value=27 Score=28.10 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+.+.++++++ ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 26 ADARLVAVADA------FPAAAEAIAGAYGCE--------VRTIDAIEAAADIDAVVICTP--TDTHADLIERFARAGKA 89 (331)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCE--------ECCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC--------cCCHHHHhcCCCCCEEEEeCC--chhHHHHHHHHHHcCCc
Confidence 67887755443 235566777777542 257778887 7899988776 33334467789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 90 v~~EK 94 (331)
T 4hkt_A 90 IFCEK 94 (331)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99854
No 109
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=70.55 E-value=23 Score=24.33 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---c
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---F 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~ 195 (284)
...+++++.+.. .....+.......|. .|.......+....+. ..|++++-... .+.-|..+++.+. .
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQ----PILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRM-PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSC-SSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHhCC
Confidence 456777777643 245666666666554 3444443344444443 36888765431 2223445555443 3
Q ss_pred CCCEEEcC-CCC---cceeeecC-CceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 196 QLPVLGTA-AGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 196 G~Pvi~~~-~~~---~~e~v~~~-~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
.+|+|... ... ..+.+..+ ..+++..|.+ .+++...|..++...
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~--~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWE--DEDVFKVVEKGLQLA 127 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHhccchheeeeCCCC--HHHHHHHHHHHHHHH
Confidence 67877543 222 12233344 6789999887 999999998887543
No 110
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=70.24 E-value=33 Score=28.81 Aligned_cols=71 Identities=7% Similarity=-0.068 Sum_probs=47.0
Q ss_pred CCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh-------ccEEEEcCCCCcCccchhHHHH
Q 023290 121 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 121 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
+++.++. +-+. ..+..+..+++++++.. ....++.+++.. .|+++..+. ...-.-.+.+|
T Consensus 63 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~I~tp--~~~H~~~~~~a 130 (417)
T 3v5n_A 63 DHYELVAGALSS------TPEKAEASGRELGLDPS----RVYSDFKEMAIREAKLKNGIEAVAIVTP--NHVHYAAAKEF 130 (417)
T ss_dssp SCEEEEEEECCS------SHHHHHHHHHHHTCCGG----GBCSCHHHHHHHHHHCTTCCSEEEECSC--TTSHHHHHHHH
T ss_pred CCcEEEEEEeCC------CHHHHHHHHHHcCCCcc----cccCCHHHHHhcccccCCCCcEEEECCC--cHHHHHHHHHH
Confidence 5677663 3332 24566777888876421 112578888877 899988776 33334467789
Q ss_pred HhcCCCEEEcC
Q 023290 193 MAFQLPVLGTA 203 (284)
Q Consensus 193 ma~G~Pvi~~~ 203 (284)
+..|++|++-.
T Consensus 131 l~aGkhVl~EK 141 (417)
T 3v5n_A 131 LKRGIHVICDK 141 (417)
T ss_dssp HTTTCEEEEES
T ss_pred HhCCCeEEEEC
Confidence 99999999854
No 111
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=70.22 E-value=19 Score=29.43 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=45.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+.++++++++ . ..++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 51 ~~~~l~av~d~------~~~~~~~~a~~~g~~----~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 115 (350)
T 3rc1_A 51 PLTEVTAIASR------RWDRAKRFTERFGGE----P---VEGYPALLERDDVDAVYVPLP--AVLHAEWIDRALRAGKH 115 (350)
T ss_dssp TTEEEEEEEES------SHHHHHHHHHHHCSE----E---EESHHHHHTCTTCSEEEECCC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCCC----C---cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCc
Confidence 67887755443 235566677777653 1 157778886 5899988776 33333457789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 116 Vl~EK 120 (350)
T 3rc1_A 116 VLAEK 120 (350)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99853
No 112
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=69.97 E-value=31 Score=27.77 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=50.8
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCC-EEEcCCCCc-ceeeec--C--CceeeecCCCCChHHHHHHHHHHhh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP-VLGTAAGGT-TEIVVN--G--TTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P-vi~~~~~~~-~e~v~~--~--~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.-++.||++|..... .|+|--.++++.. +.+ +|....+-. .....+ + .-=++.++.+ ...+++.|.+.+.
T Consensus 83 ~~l~~ADlvv~~G~~-lE~w~~~~~~~~~-~~~~~v~~s~~i~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~L~ 158 (313)
T 1toa_A 83 EWLGNADLILYNGLH-LETKMGEVFSKLR-GSRLVVAVSETIPVSQRLSLEEAEFDPHVWFDVKL--WSYSVKAVYESLC 158 (313)
T ss_dssp HHHHHCSEEEECCTT-CSTTCHHHHHHHT-TSSEEEEGGGGSCGGGSCBSTTSCBCCCGGGSHHH--HHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEcCCC-cHHHHHHHHHhcc-CCCeEEEeecCcccccccccCCCCCCCceeCCHHH--HHHHHHHHHHHHH
Confidence 457999999987753 7888888888876 445 443322110 011110 0 1113344333 5667777776665
Q ss_pred --CHHHHHHHHHHHHHHHHH
Q 023290 240 --HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 240 --~~~~~~~~~~~~~~~~~~ 257 (284)
||+......+|+.++..+
T Consensus 159 ~~DP~~a~~Y~~N~~~~~~~ 178 (313)
T 1toa_A 159 KLLPGKTREFTQRYQAYQQQ 178 (313)
T ss_dssp HHCGGGHHHHHHHHHHHHHH
T ss_pred HHChhhHHHHHHHHHHHHHH
Confidence 777777766776665543
No 113
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=69.46 E-value=33 Score=27.77 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=46.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+...+++++. +.. ..++.+++.. +|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~g~~--~~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 92 (344)
T 3mz0_A 26 SGAEIVAVTDV------NQEAAQKVVEQYQLN--ATV---YPNDDSLLADENVDAVLVTSW--GPAHESSVLKAIKAQKY 92 (344)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHTTCC--CEE---ESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCC--Cee---eCCHHHHhcCCCCCEEEECCC--chhHHHHHHHHHHCCCc
Confidence 67877755443 245667777777642 111 2577888876 899988776 33334466789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 93 vl~EK 97 (344)
T 3mz0_A 93 VFCEK 97 (344)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99853
No 114
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=69.35 E-value=39 Score=27.28 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++.+-+.. .+..+...++++.. .. ..++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 32 ~~~~~vav~d~~------~~~~~~~a~~~g~~---~~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~G~~ 97 (346)
T 3cea_A 32 QGVKLVAACALD------SNQLEWAKNELGVE---TT---YTNYKDMIDTENIDAIFIVAP--TPFHPEMTIYAMNAGLN 97 (346)
T ss_dssp SSEEEEEEECSC------HHHHHHHHHTTCCS---EE---ESCHHHHHTTSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecCC------HHHHHHHHHHhCCC---cc---cCCHHHHhcCCCCCEEEEeCC--hHhHHHHHHHHHHCCCE
Confidence 677776555432 34555666666542 11 246777786 6899988775 33333456788999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 98 v~~eK 102 (346)
T 3cea_A 98 VFCEK 102 (346)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99853
No 115
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=69.29 E-value=25 Score=24.14 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=62.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHc-CCCCcEEEeccccCHHHHHhh---ccEEEEcCCCCcCccchhHHHHHh---
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA--- 194 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~---ad~~~~ps~~~~e~~~~~~~Eama--- 194 (284)
..+++++.+.. .....+....... +. ..+.......+....+.. .|++++-... .+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~----~~~~~l~~~L~~~~g~-~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 3 LTVVLIVDDHH----LIRAGAKNLLEGAFSG-MRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFD 76 (154)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHHCTT-EEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHC
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhC
Confidence 35667776543 2556666666665 43 134444444455555544 6888765431 2223455555543
Q ss_pred cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 ~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.++|+|...... ....+..|..+++..|.+ .+++..+|..++.
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSAD--PQVLIHAVSLILE 123 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSC--HHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCC--HHHHHHHHHHHHc
Confidence 467888643222 233445677889988887 9999999998876
No 116
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=69.07 E-value=13 Score=29.85 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCccee-eec-CCce-----eeecCCCCChHHHHHHHHHH
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VVN-GTTG-----LLHPVGKEGITPLAKNIVKL 237 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~-v~~-~~~g-----~~~~~~d~~~~~~~~~i~~l 237 (284)
..-++.||++|..... .|+|--.+++... +.++|....+ +..+ ..+ ...| ++.++.+ ...+++.|.+.
T Consensus 75 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~ 149 (307)
T 3ujp_A 75 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQA 149 (307)
T ss_dssp HHHHHHCSEEEECCTT-SSTTHHHHHHTSC-SCCEEETTTT-CCCCBCCSSSSTTSBCCCCTTCHHH--HHHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCCC-hHHHHHHHHHhCC-CCCEEEeeCC-ccccccccccCCCCCCCCcCCCHHH--HHHHHHHHHHH
Confidence 3558899999987753 6777667777653 4566654322 2111 000 0011 3334333 56667777766
Q ss_pred hh--CHHHHHHHHHHHHHHHHH
Q 023290 238 AT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 238 ~~--~~~~~~~~~~~~~~~~~~ 257 (284)
+. ||+......+|+.++..+
T Consensus 150 L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 150 FVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHH
Confidence 65 777666666666665543
No 117
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=68.55 E-value=20 Score=28.56 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=46.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
+++.++-+-+. ..+..+...++++++. ..++.+++..+|+++..+. .....-.+.+|+..|++|+
T Consensus 30 ~~~~l~av~d~------~~~~~~~~a~~~~~~~-------~~~~~~ll~~~D~V~i~tp--~~~h~~~~~~al~~gk~vl 94 (308)
T 3uuw_A 30 ERFEFVGAFTP------NKVKREKICSDYRIMP-------FDSIESLAKKCDCIFLHSS--TETHYEIIKILLNLGVHVY 94 (308)
T ss_dssp SSSEEEEEECS------CHHHHHHHHHHHTCCB-------CSCHHHHHTTCSEEEECCC--GGGHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHHhcCCEEEEeCC--cHhHHHHHHHHHHCCCcEE
Confidence 67777755443 2356667777776531 3577777889999998776 3333445678999999999
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
+-.
T Consensus 95 ~EK 97 (308)
T 3uuw_A 95 VDK 97 (308)
T ss_dssp ECS
T ss_pred EcC
Confidence 853
No 118
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=68.52 E-value=37 Score=27.48 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=45.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+-+. ..+..+.++++++.. . ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 43 ~~~~lvav~d~------~~~~~~~~a~~~~~~---~---~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkh 108 (340)
T 1zh8_A 43 HLFEITAVTSR------TRSHAEEFAKMVGNP---A---VFDSYEELLESGLVDAVDLTLP--VELNLPFIEKALRKGVH 108 (340)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHHSSC---E---EESCHHHHHHSSCCSEEEECCC--GGGHHHHHHHHHHTTCE
T ss_pred CceEEEEEEcC------CHHHHHHHHHHhCCC---c---ccCCHHHHhcCCCCCEEEEeCC--chHHHHHHHHHHHCCCc
Confidence 56777655553 245566677777642 1 1257888886 4899988775 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 109 Vl~EK 113 (340)
T 1zh8_A 109 VICEK 113 (340)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99864
No 119
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=68.20 E-value=24 Score=23.70 Aligned_cols=111 Identities=10% Similarity=0.057 Sum_probs=63.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
..+++++.+.. .....+.......|. .|.......+....+. ..|++++-.. .+.-|..+++.+. ..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~--~~~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 4 TPTVMVVDESR----ITFLAVKNALEKDGF--NVIWAKNEQEAFTFLRREKIDLVFVDVF--EGEESLNLIRRIREEFPD 75 (142)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHGGGTC--EEEEESSHHHHHHHHTTSCCSEEEEECT--TTHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhccCCCEEEEeCC--CCCcHHHHHHHHHHHCCC
Confidence 44666666543 245666666666554 3443333334444443 4678776442 3333444554443 36
Q ss_pred CCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 197 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 197 ~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
+|+|... ... .....+.|..+++..|.+ .+++...|..++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINSVKAGAVDYILKPFR--LDYLLERVKKIISSTP 123 (142)
T ss_dssp CEEEEEESCCCHHHHHHHHHHTCSCEEESSCC--HHHHHHHHHHHHHC--
T ss_pred CCEEEEECCCCHHHHHHHHHCCcceeEeCCCC--HHHHHHHHHHHHhhcc
Confidence 7877543 222 223445677889999888 9999999999887543
No 120
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=68.17 E-value=15 Score=29.73 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+.+..+ +..+.++++++++. ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~~~av~d~~~------~~~~~~a~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 93 (329)
T 3evn_A 28 GNGEVVAVSSRTL------ESAQAFANKYHLPK------AYDKLEDMLADESIDVIYVATI--NQDHYKVAKAALLAGKH 93 (329)
T ss_dssp CSEEEEEEECSCS------STTCC---CCCCSC------EESCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCCH------HHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCe
Confidence 6777775544322 12233344444321 1267888887 7899988776 33333457789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 94 Vl~EK 98 (329)
T 3evn_A 94 VLVEK 98 (329)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99854
No 121
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=68.15 E-value=24 Score=23.64 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=66.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~-- 195 (284)
...++.++.+.. .....+...... .+.. .+.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 7 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 7 NDFSILIIEDDK----EFADMLTQFLENLFPYA-KIKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSICHRIKSTP 80 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHCTTC-EEEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHHHHHHHTST
T ss_pred CCceEEEEECCH----HHHHHHHHHHHhccCcc-EEEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHHHHHHHhCc
Confidence 456677776643 255667777776 5542 1444444344444443 46888765431 23335566666543
Q ss_pred ---CCCEEEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 ---QLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 ---G~Pvi~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|.. ..... .+.++.|..+++..|.+ .+++..+|..++..
T Consensus 81 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLN--FTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHT
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHh
Confidence 5777753 33222 23445677889999887 99999999988763
No 122
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=68.12 E-value=23 Score=23.33 Aligned_cols=76 Identities=14% Similarity=0.338 Sum_probs=46.5
Q ss_pred eEEE-EEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh--cCCCE
Q 023290 123 VHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPV 199 (284)
Q Consensus 123 ~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama--~G~Pv 199 (284)
.+++ ++|.|..-. -..+.+++.+++.++.-.|...+. .++...+..+|+++.... .. +-..-++..+ .++||
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~-~~~~~~~~~~D~Ii~t~~--l~-~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAE-TRLSEVVDRFDVVLLAPQ--SR-FNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECS-TTHHHHTTTCSEEEECSC--CS-SHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecH-HHHHhhcCCCCEEEECCc--cH-HHHHHHHHHhcccCCCE
Confidence 4444 455544333 567889999999887544443333 577777889999988765 21 1123333332 58999
Q ss_pred EEcC
Q 023290 200 LGTA 203 (284)
Q Consensus 200 i~~~ 203 (284)
+.-+
T Consensus 80 ~~I~ 83 (109)
T 2l2q_A 80 EIIN 83 (109)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8754
No 123
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=67.58 E-value=33 Score=28.50 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=46.5
Q ss_pred CCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh-------ccEEEEcCCCCcCccchhHHHH
Q 023290 121 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 121 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
+++.++- +-+. ..+..+..+++++++.. ....++.+++.. .|++++.+. ...-.-.+.+|
T Consensus 38 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~i~tp--~~~H~~~~~~a 105 (398)
T 3dty_A 38 NTFVLVAGAFDI------DPIRGSAFGEQLGVDSE----RCYADYLSMFEQEARRADGIQAVSIATP--NGTHYSITKAA 105 (398)
T ss_dssp GSEEEEEEECCS------SHHHHHHHHHHTTCCGG----GBCSSHHHHHHHHTTCTTCCSEEEEESC--GGGHHHHHHHH
T ss_pred CCeEEEEEEeCC------CHHHHHHHHHHhCCCcc----eeeCCHHHHHhcccccCCCCCEEEECCC--cHHHHHHHHHH
Confidence 5666663 3332 24566777888876421 112578888876 899988775 33333467789
Q ss_pred HhcCCCEEEcC
Q 023290 193 MAFQLPVLGTA 203 (284)
Q Consensus 193 ma~G~Pvi~~~ 203 (284)
+..|++|++-.
T Consensus 106 l~aGkhVl~EK 116 (398)
T 3dty_A 106 LEAGLHVVCEK 116 (398)
T ss_dssp HHTTCEEEECS
T ss_pred HHCCCeEEEeC
Confidence 99999999843
No 124
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=67.20 E-value=34 Score=24.96 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=60.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEE-EeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~ 197 (284)
.++.++.+.. .....+.......|. .+. ......+....+. ..|++++-..- .+.-|..+++.+. ...
T Consensus 14 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~~~~~dlvi~D~~~-p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 14 RRVLIAEDEA----LIRMDLAEMLREEGY--EIVGEAGDGQEAVELAELHKPDLVIMDVKM-PRRDGIDAASEIASKRIA 86 (205)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEECCH----HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCChHHHHHHHHhcCCC
Confidence 4566665532 245555666655443 232 2222223333332 46787764331 2223455555543 234
Q ss_pred CEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 198 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 198 Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
|+|.. .... ..+.++.|..+++..|.+ ++++...|..++...
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFS--ISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCC--HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 77643 2222 234455677889999988 999999999887644
No 125
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=67.07 E-value=23 Score=23.02 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=63.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCc-CccchhHHHHHh-----
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA----- 194 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~-e~~~~~~~Eama----- 194 (284)
.++.++.+.. .....+.......|. .+.......+....+. ..|++++-... . +.-|..+++.+.
T Consensus 6 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~d~~~-~~~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDT----ALSATLRSALEGRGF--TVDETTDGKGSVEQIRRDRPDLVVLAVDL-SAGQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHHTC--EEEEECCHHHHHHHHHHHCCSEEEEESBC-GGGCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCc--eEEEecCHHHHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCccc
Confidence 3566666532 245666666666554 3443333333333332 46887764331 2 223455666553
Q ss_pred cCCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 195 FQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 195 ~G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+|.. .... .+..+.|..+++..|.+ .+++...|..++..
T Consensus 79 ~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVD--ADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCC--HHHHHHHHHHHHCC
T ss_pred cCCCEEEE-ecCCchhHHHHHHhCcchheeCCCC--HHHHHHHHHHHHcC
Confidence 46888876 3322 23445577789999888 99999999887653
No 126
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=66.83 E-value=28 Score=23.87 Aligned_cols=109 Identities=11% Similarity=0.125 Sum_probs=58.3
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~ 197 (284)
.+++|+.+.. .....+.......|. .|.......+....+. ..|++++-... .+.-|..+++.+. ..+
T Consensus 15 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 87 (153)
T 3hv2_A 15 PEILLVDSQE----VILQRLQQLLSPLPY--TLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPST 87 (153)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTSSC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTS
T ss_pred ceEEEECCCH----HHHHHHHHHhcccCc--EEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCCC
Confidence 4555555432 234445555544432 2333332233333332 35777764431 2333445554443 467
Q ss_pred CEEEcCCCCc----ceeeecC-CceeeecCCCCChHHHHHHHHHHhhC
Q 023290 198 PVLGTAAGGT----TEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 198 Pvi~~~~~~~----~e~v~~~-~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
|+|....... .+.+..| ..+++..|.+ .+++..+|..++..
T Consensus 88 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 88 TRILLTGDPDLKLIAKAINEGEIYRYLSKPWD--DQELLLALRQALEH 133 (153)
T ss_dssp EEEEECCCCCHHHHHHHHHTTCCSEEECSSCC--HHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHhCCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 7775433222 2334456 6789999888 99999999988764
No 127
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=66.64 E-value=26 Score=23.39 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh---c
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA---F 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama---~ 195 (284)
...+++++.+.. .....+.......+. .+.......+....+ ...|++++-... .+.-|..+++.+. .
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (137)
T 3hdg_A 6 VALKILIVEDDT----DAREWLSTIISNHFP--EVWSAGDGEEGERLFGLHAPDVIITDIRM-PKLGGLEMLDRIKAGGA 78 (137)
T ss_dssp -CCCEEEECSCH----HHHHHHHHHHHTTCS--CEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred cccEEEEEeCCH----HHHHHHHHHHHhcCc--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 346677777643 245666666666432 354444433444444 346888875431 2333555555443 3
Q ss_pred CCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..|+|....... .+.++.|..+++..|.+ ++++..+|..+++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 79 KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE--PGRLMETLEDFRHI 125 (137)
T ss_dssp CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC--HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCcChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHHH
Confidence 677776543322 23455678889999988 99999999988753
No 128
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=65.88 E-value=26 Score=23.11 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---hccEEEEcCCCCcC-ccchhHHHHHh--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA-- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---~ad~~~~ps~~~~e-~~~~~~~Eama-- 194 (284)
...++.++.+.. .....+.......|. .+.......+....+. ..|++++-... .+ .-|..+++.+.
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 4 EAVTILLADDEA----ILLLDFESTLTDAGF--LVTAVSSGAKAIEMLKSGAAIDGVVTDIRF-CQPPDGWQVARVAREI 76 (132)
T ss_dssp SSCEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCCEEEEESCC-SSSSCHHHHHHHHHHH
T ss_pred CCceEEEEcCcH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHcCCCCCEEEEeeeC-CCCCCHHHHHHHHHhc
Confidence 345677776643 255666777776654 3444333344444443 46888765431 22 23455555543
Q ss_pred -cCCCEEEcCCCCcceeeecC--CceeeecCCCCChHHHHHHHHHHhhC
Q 023290 195 -FQLPVLGTAAGGTTEIVVNG--TTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 195 -~G~Pvi~~~~~~~~e~v~~~--~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+|........+..... ..+++..|.+ .+++..+|..++..
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~--~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 77 DPNMPIVYISGHAALEWASNGVPDSIILEKPFT--SAQLITAVSQLLNA 123 (132)
T ss_dssp CTTCCEEEEESSCCTTHHHHSCTTCEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCccHHHHHhhcCCcceEeCCCC--HHHHHHHHHHHHhc
Confidence 36788754322212211111 1268888887 99999999887763
No 129
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=65.84 E-value=37 Score=28.75 Aligned_cols=75 Identities=16% Similarity=-0.010 Sum_probs=44.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHH---HcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVM---QKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~---~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~ 195 (284)
+++.++-+-+.. .+..+...+ +++++.--.+.+..+++.+++. ..|+++..+. ...-.-.+.+||..
T Consensus 43 ~~~~lvav~d~~------~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp--~~~h~~~~~~al~a 114 (444)
T 2ixa_A 43 DDVEIVAFADPD------PYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP--WEWHHEHGVAAMKA 114 (444)
T ss_dssp TTEEEEEEECSC------HHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC--GGGHHHHHHHHHHT
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHC
Confidence 778887655532 233333333 4555322222222237888887 5899888776 33334466789999
Q ss_pred CCCEEEcC
Q 023290 196 QLPVLGTA 203 (284)
Q Consensus 196 G~Pvi~~~ 203 (284)
|++|++-.
T Consensus 115 GkhV~~EK 122 (444)
T 2ixa_A 115 GKIVGMEV 122 (444)
T ss_dssp TCEEEECC
T ss_pred CCeEEEeC
Confidence 99999853
No 130
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=65.82 E-value=31 Score=27.89 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+.++++++. .. ..++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 27 ~~~~l~av~d~------~~~~~~~~a~~~g~----~~---~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 91 (344)
T 3euw_A 27 PDLELVVIADP------FIEGAQRLAEANGA----EA---VASPDEVFARDDIDGIVIGSP--TSTHVDLITRAVERGIP 91 (344)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHTTTC----EE---ESSHHHHTTCSCCCEEEECSC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEEeCC--chhhHHHHHHHHHcCCc
Confidence 67877755443 23556666666652 11 257888888 8899988776 33334467789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 92 v~~EK 96 (344)
T 3euw_A 92 ALCEK 96 (344)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99864
No 131
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=65.38 E-value=12 Score=28.13 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=51.1
Q ss_pred CeEEEEEec--CCCCChHHHHHHHHHHHHcCCCCcEEEec----cccCHHHHHhhccEEEEcCCCCcCcc---------c
Q 023290 122 SVHAVIIGS--DMNAQTKFESELRNYVMQKKIQDRVHFVN----KTLTVAPYLAAIDVLVQNSQAWGECF---------G 186 (284)
Q Consensus 122 ~~~l~i~G~--~~~~~~~~~~~l~~~~~~~~~~~~v~~~~----~~~~~~~~~~~ad~~~~ps~~~~e~~---------~ 186 (284)
..++.++.. +.++..++...+++..+++|. .+..+. ..++..+.+..||.+++|.- +.+ |
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~--~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG---~~~~l~~~L~~~g 101 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGL--LVEELDIATESLGEITTKLRKNDFIYVTGG---NTFFLLQELKRTG 101 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTC--EEEECCTTTSCHHHHHHHHHHSSEEEECCS---CHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCC--eEEEEEecCCChHHHHHHHHhCCEEEECCC---CHHHHHHHHHHCC
Confidence 346666653 322334577888888888887 466653 33566678999999998862 221 1
Q ss_pred --hhHHHHHhcCCCEEEcC
Q 023290 187 --RITIEAMAFQLPVLGTA 203 (284)
Q Consensus 187 --~~~~Eama~G~Pvi~~~ 203 (284)
-.+-|+...|+|++.+.
T Consensus 102 l~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 102 ADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp HHHHHHHHHHTTCEEEEET
T ss_pred hHHHHHHHHHcCCeEEEEC
Confidence 24557888899999874
No 132
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=65.18 E-value=31 Score=28.07 Aligned_cols=68 Identities=7% Similarity=0.058 Sum_probs=45.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+..+++++++ ...++.+++ ..+|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~lvav~d~------~~~~~~~~~~~~g~~-------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 92 (354)
T 3db2_A 28 EKLKLVTCYSR------TEDKREKFGKRYNCA-------GDATMEALLAREDVEMVIITVP--NDKHAEVIEQCARSGKH 92 (354)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHHTCC-------CCSSHHHHHHCSSCCEEEECSC--TTSHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCCC-------CcCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCE
Confidence 67887755443 235566677776653 135788888 45899888776 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 93 vl~EK 97 (354)
T 3db2_A 93 IYVEK 97 (354)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99864
No 133
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=64.99 E-value=22 Score=30.13 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=46.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQL 197 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~ 197 (284)
+++.++-+-+.. .+..+...++++++. .+... .++.+++. .+|+++..+. .....-.+.+|+..|+
T Consensus 107 ~~~~lvav~d~~------~~~~~~~a~~~g~~~~~~~~~---~~~~~ll~~~~vD~V~iatp--~~~h~~~~~~al~aGk 175 (433)
T 1h6d_A 107 QHSRIEALVSGN------AEKAKIVAAEYGVDPRKIYDY---SNFDKIAKDPKIDAVYIILP--NSLHAEFAIRAFKAGK 175 (433)
T ss_dssp SSEEEEEEECSC------HHHHHHHHHHTTCCGGGEECS---SSGGGGGGCTTCCEEEECSC--GGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEcCC------HHHHHHHHHHhCCCccccccc---CCHHHHhcCCCCCEEEEcCC--chhHHHHHHHHHHCCC
Confidence 677776555432 345666777777642 23222 45666776 6899998776 3333446778999999
Q ss_pred CEEEcC
Q 023290 198 PVLGTA 203 (284)
Q Consensus 198 Pvi~~~ 203 (284)
+|++-.
T Consensus 176 ~Vl~EK 181 (433)
T 1h6d_A 176 HVMCEK 181 (433)
T ss_dssp EEEECS
T ss_pred cEEEcC
Confidence 999854
No 134
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=64.97 E-value=28 Score=23.17 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--h-ccEEEEcCCCCcCccchhHHHHHh---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--A-IDVLVQNSQAWGECFGRITIEAMA--- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~-ad~~~~ps~~~~e~~~~~~~Eama--- 194 (284)
...+++++.+.. .....+.....+.|. .|.......+....+. . .|++++-... .+.-|..+++.+.
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 6 ARPLVLVVDDNA----VNREALILYLKSRGI--DAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASE 78 (136)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHHTTC--CEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTST
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcC
Confidence 345677777643 356677777777664 3444433333333332 2 6787765431 3334566666654
Q ss_pred -cCCCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 195 -FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 195 -~G~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
..+|+|...... ..+.++.|..+++..|.+ .+++..+|.++....
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVD--LGKLLELVNKELKIG 128 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC--
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHhcCc
Confidence 346777543222 223445678899999988 999999999887643
No 135
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=64.81 E-value=33 Score=24.61 Aligned_cols=110 Identities=11% Similarity=0.132 Sum_probs=63.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
..++.++.+.. .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+- ..
T Consensus 7 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~ 79 (184)
T 3rqi_A 7 DKNFLVIDDNE----VFAGTLARGLERRGY--AVRQAHNKDEALKLAGAEKFEFITVXLHL-GNDSGLSLIAPLCDLQPD 79 (184)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHTTSCCSEEEECSEE-TTEESHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhhCCCCEEEEeccC-CCccHHHHHHHHHhcCCC
Confidence 45666666543 245666666666554 3433333333334443 35887764321 2333555665543 46
Q ss_pred CCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 197 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 197 ~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
+|||... ... ..+.++.|..+++..|.+ ++++..+|..++..
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 80 ARILVLTGYASIATAVQAVKDGADNYLAKPAN--VESILAALQTNASE 125 (184)
T ss_dssp CEEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHTSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHH
Confidence 7887543 222 233455688899999988 99999999887653
No 136
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=64.71 E-value=2.9 Score=30.64 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHhhccEEEEcCCCCcCccc--hhHHHHHhcCCCEEEcCCCCc-ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 167 YLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAGGT-TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~--~~~~Eama~G~Pvi~~~~~~~-~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+...+|.+|... .++| ..+.||+..++||++-+..+. ..++.+.....+.-.+| ++++.+.|.+.+.
T Consensus 104 m~~~sda~Ivlp----Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~--~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 104 NALSSNVLVAVG----MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAAD--VAGAIAAVKQLLA 173 (176)
T ss_dssp CGGGCSEEEEES----CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESS--HHHHHHHHHHHHH
T ss_pred HHHhCCEEEEec----CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCC--HHHHHHHHHHHHH
Confidence 456788876532 2334 257789999999998875221 11222222223333344 8888888887764
No 137
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.22 E-value=28 Score=22.93 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=62.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---c
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---F 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~ 195 (284)
...++.++.+.. .....+.......|. .+.......+....+. ..|++++-... .+.-|..+++.+. .
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQ----VFRSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 456777777643 256667777777654 3444333334444443 36888765431 2333555555543 3
Q ss_pred CCCEEEcCCCCc----ceeeecCCceeeecCC-CCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTAAGGT----TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|....... .+.++.|..+++..|. + .+.+.+.|..++..
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~--~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFACLYP 126 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC-----CHHHHHHHHHHC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCc--HHHHHHHHHHHhch
Confidence 577775432222 2345568888999987 6 88999999888763
No 138
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=64.01 E-value=18 Score=28.67 Aligned_cols=88 Identities=16% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhc-CCCEEEcCCCCcceeee-c---------------C-CceeeecCCCCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIVV-N---------------G-TTGLLHPVGKEG 226 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-G~Pvi~~~~~~~~e~v~-~---------------~-~~g~~~~~~d~~ 226 (284)
..-++.||++|..... .|+|=-.++++... ++.+|.. ..++. +.. + . .-=++.++.+
T Consensus 55 ~~~l~~Adlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~-- 129 (286)
T 3gi1_A 55 VAAIYDADLFVYHSHT-LEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVL-- 129 (286)
T ss_dssp HHHHHTSSEEEESCTT-TSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHH--
T ss_pred HHHHHhCCEEEEcCCC-chHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHH--
Confidence 3558899999987653 67665566665543 3344432 22221 100 0 0 0012233333
Q ss_pred hHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 227 ~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
...+++.|.+.+. ||+......+|+.++..+
T Consensus 130 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 130 AGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 5566666666655 777666666666665543
No 139
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=62.98 E-value=29 Score=23.11 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=61.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcC-CCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA--- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama--- 194 (284)
...+++++.+.. .....++...+..| . .|.......+....+ ...|++++-... .+.-|..+++.+.
T Consensus 13 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 13 KRKQVALFSSDP----NFKRDVATRLDALAIY--DVRVSETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALW 85 (135)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHHHTSSE--EEEEECGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGG
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHhhcCCe--EEEEeccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhC
Confidence 345667776543 25566666676655 3 343333322332222 246787754321 2223444444433
Q ss_pred cCCCEEEcCC-CC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 FQLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 ~G~Pvi~~~~-~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
-.+|+|.... .. ..+.++.|..+++..|.+ ++++..+|..++.
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 132 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLD--GKELLNAVTFHDT 132 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTC-
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCC--HHHHHHHHHHHhc
Confidence 3678875432 22 223445678899999988 9999999988765
No 140
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=62.97 E-value=29 Score=22.71 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=62.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
+.++.++.+.. .....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEE----PVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHhcCCC
Confidence 34666776643 245666666666554 3443333234444443 35777764331 2223445555543 46
Q ss_pred CCEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.|+|.. .... ..+.++.|..+++..|.+ .+++..+|..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE--DTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHH
Confidence 788754 3322 233445678899999988 9999999988765
No 141
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=62.76 E-value=30 Score=22.84 Aligned_cols=79 Identities=5% Similarity=0.026 Sum_probs=44.5
Q ss_pred CCeEEEE-EecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh--cCC
Q 023290 121 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQL 197 (284)
Q Consensus 121 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama--~G~ 197 (284)
+..++++ ++.|. -..-..+.+++.+++.|++-.+.-.+. .++...+..+|++++... -.+-..-++..+ .|+
T Consensus 5 ~~mkIlL~C~aGm-STsllv~km~~~a~~~gi~v~i~a~~~-~~~~~~~~~~DvvLLgPQ---V~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 5 KELKVLVLCAGSG-TSAQLANAINEGANLTEVRVIANSGAY-GAHYDIMGVYDLIILAPQ---VRSYYREMKVDAERLGI 79 (108)
T ss_dssp CCEEEEEEESSSS-HHHHHHHHHHHHHHHHTCSEEEEEEET-TSCTTTGGGCSEEEECGG---GGGGHHHHHHHHTTTTC
T ss_pred cCceEEEECCCCC-CHHHHHHHHHHHHHHCCCceEEEEcch-HHHHhhccCCCEEEEChH---HHHHHHHHHHHhhhcCC
Confidence 3444444 44443 222255677788888887533322222 355566788999987654 223334444444 489
Q ss_pred CEEEcCC
Q 023290 198 PVLGTAA 204 (284)
Q Consensus 198 Pvi~~~~ 204 (284)
||.+-+.
T Consensus 80 pV~vI~~ 86 (108)
T 3nbm_A 80 QIVATRG 86 (108)
T ss_dssp EEEECCH
T ss_pred cEEEeCH
Confidence 9987664
No 142
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=62.69 E-value=31 Score=22.97 Aligned_cols=110 Identities=11% Similarity=0.125 Sum_probs=63.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCc-----CccchhHHHHH-
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWG-----ECFGRITIEAM- 193 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~-----e~~~~~~~Eam- 193 (284)
..+++++.+.. .....+.......+. .|.......+....+. ..|++++-... . +.-|..+++.+
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~~-~~~~~~~~~g~~~~~~l~ 75 (140)
T 2qr3_A 3 LGTIIIVDDNK----GVLTAVQLLLKNHFS--KVITLSSPVSLSTVLREENPEVVLLDMNF-TSGINNGNEGLFWLHEIK 75 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTTSS--EEEEECCHHHHHHHHHHSCEEEEEEETTT-TC-----CCHHHHHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHHcCCCCEEEEeCCc-CCCCCCCccHHHHHHHHH
Confidence 34566666543 245556666665543 3444433344444443 35777764431 1 22344555444
Q ss_pred --hcCCCEEEcCC-CC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 194 --AFQLPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 194 --a~G~Pvi~~~~-~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
...+|+|.... .. ..+.++.|..+++..+.+ .+++..+|..++..
T Consensus 76 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 76 RQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWD--NQKLLETLLNAASQ 126 (140)
T ss_dssp HHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHTC
T ss_pred hhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCC--HHHHHHHHHHHHHh
Confidence 34788875432 21 233445677889999888 99999999988764
No 143
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=62.24 E-value=34 Score=23.20 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh----
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---- 194 (284)
...++.++.+.. .....+.......|. .+......++....+. ..|++++-..- .+.-|..+++.+.
T Consensus 13 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~m-p~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 13 RSMRMLVADDHE----ANRMVLQRLLEKAGH--KVLCVNGAEQVLDAMAEEDYDAVIVDLHM-PGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp --CEEEEECSSH----HHHHHHHHHHHC--C--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhchh
Confidence 345666666532 244555666655443 3333333233333433 46887764331 2333556666553
Q ss_pred ---cCCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 195 ---FQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 195 ---~G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
-.+|+|....... .+..+.|..+++..|.+ .+++.++|..+...
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVV--AAKLLDTLADLAVS 136 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred ccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCC--HHHHHHHHHHHHHh
Confidence 2367775433322 23344578899999988 99999999888653
No 144
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=61.98 E-value=37 Score=27.73 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+.. .+..+..++++++. +.. ..++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 47 ~~~~lvav~d~~------~~~~~~~a~~~g~~--~~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 113 (357)
T 3ec7_A 47 SGVEVVAVCDIV------AGRAQAALDKYAIE--AKD---YNDYHDLINDKDVEVVIITAS--NEAHADVAVAALNANKY 113 (357)
T ss_dssp TTEEEEEEECSS------TTHHHHHHHHHTCC--CEE---ESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHhCCC--Cee---eCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 678877555432 24455666676641 111 257778887 4899988776 33334467789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 114 Vl~EK 118 (357)
T 3ec7_A 114 VFCEK 118 (357)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 99754
No 145
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=61.74 E-value=35 Score=23.27 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=62.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh---ccEEEEcCCCCcCccchhHHHHH---hc
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAM---AF 195 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~---ad~~~~ps~~~~e~~~~~~~Eam---a~ 195 (284)
..+++++.+.. .....+....+. + -.|.......+....+.. .|++++-..- .+.-|..+++.+ ..
T Consensus 4 ~~~ILivdd~~----~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 75 (151)
T 3kcn_A 4 NERILLVDDDY----SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISP 75 (151)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCH----HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCC
Confidence 35667776643 234445555532 2 234444433444444432 3888865431 233345555444 34
Q ss_pred CCCEEEcC-CCC---cceeeecC-CceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 196 QLPVLGTA-AGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 196 G~Pvi~~~-~~~---~~e~v~~~-~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
..|+|... ... ..+.+..| ..+++..|.+ .+++..+|..++....
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 76 NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQ--MSDIKAAINAGIKQYD 125 (151)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCC--HHHHHHHHHHHHHHHH
Confidence 67777543 222 23344456 6789999988 9999999999887544
No 146
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=61.48 E-value=19 Score=29.85 Aligned_cols=84 Identities=12% Similarity=-0.047 Sum_probs=53.2
Q ss_pred cCHHHHHhhccEEEEcCCCCcCc-cchhHHHHHhcCCCEEEcCCCCcceeeecCCceeee-cCCCCChHHHHHHHHHHhh
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGEC-FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH-PVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~-~~~~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~-~~~d~~~~~~~~~i~~l~~ 239 (284)
.+..++++....++..=.+.... .-=++.+|+.+|+-.|.-..+...+++..+ .-+-+ +-. +++++++.|..|-+
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp~-SfI~~~dF~--s~~~La~yL~~L~~ 299 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNPK-SFVNVHDFK--NFDEAIDYIKYLHT 299 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCGG-GSEEGGGSS--SHHHHHHHHHHHHT
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCCC-ceEEcccCC--CHHHHHHHHHHHhc
Confidence 46677888888877532110222 223788999999655554444555665332 22222 223 39999999999999
Q ss_pred CHHHHHHHH
Q 023290 240 HVERRLTMG 248 (284)
Q Consensus 240 ~~~~~~~~~ 248 (284)
|++++.+.-
T Consensus 300 n~~~Y~~y~ 308 (371)
T 2nzw_A 300 HKNAYLDML 308 (371)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887654
No 147
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=61.39 E-value=27 Score=28.22 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=45.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCE
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 199 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pv 199 (284)
+++++-+.+. ..+..+.++++++++. + ..++.+++. ..|+++..+. ...-.-.+.+|+..|++|
T Consensus 28 ~~~l~av~d~------~~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~~GkhV 93 (334)
T 3ohs_X 28 EHQVVAVAAR------DLSRAKEFAQKHDIPK-A-----YGSYEELAKDPNVEVAYVGTQ--HPQHKAAVMLCLAAGKAV 93 (334)
T ss_dssp TEEEEEEECS------SHHHHHHHHHHHTCSC-E-----ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHhcCCEE
Confidence 4666655543 2456677777777641 1 257888887 6899988776 333334577899999999
Q ss_pred EEcC
Q 023290 200 LGTA 203 (284)
Q Consensus 200 i~~~ 203 (284)
++-.
T Consensus 94 l~EK 97 (334)
T 3ohs_X 94 LCEK 97 (334)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9864
No 148
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=61.22 E-value=34 Score=22.90 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=57.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh-----c
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA-----F 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama-----~ 195 (284)
.+++++.+.. .....+....... -.|.......+....+ ...|++++-... .+.-|..+++.+. .
T Consensus 4 ~~iLivdd~~----~~~~~l~~~l~~~---~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (140)
T 3n53_A 4 KKILIIDQQD----FSRIELKNFLDSE---YLVIESKNEKEALEQIDHHHPDLVILDMDI-IGENSPNLCLKLKRSKGLK 75 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTT---SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHhc---ceEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHcCcccC
Confidence 3556665532 2344455555443 2344333333333333 245887765431 2333455555554 4
Q ss_pred CCCEEEcCCC----CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~~~----~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
++|+|..... ...+.++.|..+++..|.+ .+++..+|..++..
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEIHLRT 122 (140)
T ss_dssp TCCEEEEECC----CTTTTTTCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCC--HHHHHHHHHHHHhh
Confidence 6788754222 2234455677889999988 99999999888753
No 149
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=60.32 E-value=37 Score=27.13 Aligned_cols=68 Identities=9% Similarity=-0.028 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
+++.++.+-+..+ +..+.+.++++++ . ..++..+-..+|+++..+. .....-.+.+|+..|++|+
T Consensus 29 ~~~~lvav~d~~~------~~~~~~~~~~g~~----~---~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 29 SDWTLQGAWSPTR------AKALPICESWRIP----Y---ADSLSSLAASCDAVFVHSS--TASHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp SSEEEEEEECSSC------TTHHHHHHHHTCC----B---CSSHHHHHTTCSEEEECSC--TTHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECCCH------HHHHHHHHHcCCC----c---cCcHHHhhcCCCEEEEeCC--chhHHHHHHHHHHcCCeEE
Confidence 6788774443222 2334455555543 1 2344444467999998776 3333345668899999999
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
+-.
T Consensus 94 ~eK 96 (319)
T 1tlt_A 94 VDK 96 (319)
T ss_dssp EES
T ss_pred EeC
Confidence 853
No 150
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=59.64 E-value=37 Score=22.79 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=62.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHc-CCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~-- 195 (284)
...+++++.+.. .....+....... +.. .+.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 8 EKMKVIIVEDEF----LAQQELSWLINTHSQME-IVGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLLAQNISQFA 81 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHHHHHHTTST
T ss_pred CceEEEEEcCCH----HHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHccC
Confidence 456777777643 2456666666654 221 1222222233334443 36888865431 23335566666653
Q ss_pred -CCCEE-EcCCC-CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 -QLPVL-GTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 -G~Pvi-~~~~~-~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..|+| .+... ...+.++.|..+++..|.+ .+++...|..++..
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAWKEHAVEAFELEAFDYILKPYQ--ESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESCCTTHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 34454 33322 2233445677889999887 99999999887753
No 151
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=59.58 E-value=35 Score=22.50 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=59.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc-----
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF----- 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~----- 195 (284)
.++.++.+.. .....++.... .+. .+.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 5 ~~ilivdd~~----~~~~~l~~~l~-~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 5 PKVLIVENSW----TMRETLRLLLS-GEF--DCTTAADGASGLQQALAHPPDVLISDVNM-DGMDGYALCGHFRSEPTLK 76 (133)
T ss_dssp CEEEEECSCH----HHHHHHHHHHT-TTS--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEcCCH----HHHHHHHHHHh-CCc--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhCCccC
Confidence 4566666532 23444444444 222 3443333333333332 46887765431 23335556655543
Q ss_pred CCCEEEcCCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
++|+|..... ...+....|..+++..|.+ ++++..+|..++..
T Consensus 77 ~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTEGPADQPVPDAYLVKPVK--PPVLIAQLHALLAR 122 (133)
T ss_dssp TCCEEEEESCCC-----TTSCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHhHHHHhhcCCceEEeccCC--HHHHHHHHHHHHhh
Confidence 6788754322 1233445677789999988 99999999988763
No 152
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=59.52 E-value=59 Score=26.38 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=45.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+. ..+..+...+++++ . ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 37 ~~~~lvav~d~------~~~~~~~~~~~~~~----~---~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 101 (354)
T 3q2i_A 37 DRAELIDVCDI------DPAALKAAVERTGA----R---GHASLTDMLAQTDADIVILTTP--SGLHPTQSIECSEAGFH 101 (354)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHHCC----E---EESCHHHHHHHCCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCC----c---eeCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCC
Confidence 57777755443 23556666777653 1 1257778887 7899988775 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 102 v~~EK 106 (354)
T 3q2i_A 102 VMTEK 106 (354)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99854
No 153
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=59.30 E-value=37 Score=22.70 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=62.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----c
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~ 195 (284)
.++.++.+.. .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 5 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~lr~~~~~~ 77 (136)
T 3t6k_A 5 HTLLIVDDDD----TVAEMLELVLRGAGY--EVRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCKRVRQHPLTK 77 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSGGGT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCcC
Confidence 4556665532 245566666666553 3443333233333332 35887764431 2333556665553 3
Q ss_pred CCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|....... .+.++.|..+++..|.+ ++++..+|..++..
T Consensus 78 ~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 78 TLPILMLTAQGDISAKIAGFEAGANDYLAKPFE--PQELVYRVKNILAR 124 (136)
T ss_dssp TCCEEEEECTTCHHHHHHHHHHTCSEEEETTCC--HHHHHHHHHHHHHC
T ss_pred CccEEEEecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHhc
Confidence 678875432222 23445688899999988 99999999988764
No 154
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=59.12 E-value=36 Score=22.59 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh-hccEEEEcCCCCcCccchhHHHHHh--c--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMA--F-- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~-~ad~~~~ps~~~~e~~~~~~~Eama--~-- 195 (284)
...++.++.+.. .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 6 TGLKVLVMDENG----VSRMVTKGLLVHLGC--EVTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIALRIHEKFTK 78 (136)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHHHHHHhhhh
Confidence 345677776543 245566666666554 3443332233333332 23888764331 2223455555553 1
Q ss_pred ---CCC-EE-EcCCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 ---QLP-VL-GTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 ---G~P-vi-~~~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..| +| .+..... .+..+.|..+++..|.+ .+++.+.|..++..
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVS--LDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHSC
T ss_pred ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCC--HHHHHHHHHHHhch
Confidence 344 44 4443332 22445677899999988 99999999887653
No 155
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=58.77 E-value=75 Score=26.13 Aligned_cols=110 Identities=9% Similarity=0.054 Sum_probs=61.8
Q ss_pred CeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCC---CCCCeEEEEecccccc--ccHHHHHHHHHHHHHHHHhhccC
Q 023290 45 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV---RNEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLE 119 (284)
Q Consensus 45 ~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~i~~~g~~~~~--k~~~~~~~a~~~l~~~~~~~~~~ 119 (284)
.+-||.-|-+. .|...-. +--.+++.+|- ..-+++|.|+|-+... .-...++.++.+
T Consensus 157 ~vPVINag~g~---HPtQaLa----Dl~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~----------- 218 (359)
T 1zq6_A 157 PVPVINMETIT---HPCQELA----HALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATR----------- 218 (359)
T ss_dssp SSCEEESSSSC---CHHHHHH----HHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHH-----------
T ss_pred CCCEEeCCCCC---CcHHHHH----HHHHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHH-----------
Confidence 34466655544 3332211 13566777773 3333348899976543 223344444433
Q ss_pred CCCeEEEEEecC-CCCC-hHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 120 VPSVHAVIIGSD-MNAQ-TKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 120 ~~~~~l~i~G~~-~~~~-~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
-++.+.+++.. .... ++..+.+++.+++.|. .+.+. .++.+.+..||++....
T Consensus 219 -~G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g~--~v~~~---~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 219 -MGMDVTLLCPTPDYILDERYMDWAAQNVAESGG--SLQVS---HDIDSAYAGADVVYAKS 273 (359)
T ss_dssp -TTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSC--EEEEE---CCHHHHHTTCSEEEEEC
T ss_pred -cCCEEEEEcCccccCCCHHHHHHHHHHHHHcCC--eEEEE---CCHHHHhcCCCEEEECC
Confidence 46789999865 3222 2345555666666553 34333 47888999999987654
No 156
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=58.29 E-value=36 Score=22.23 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----cCCCEEEcC-CCCc--
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQLPVLGTA-AGGT-- 207 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~G~Pvi~~~-~~~~-- 207 (284)
....+....+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|+|... ....
T Consensus 14 ~~~~l~~~l~~~g~--~v~~~~~~~~al~~l~~~~~dlvllD~~~-p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~ 90 (122)
T 3gl9_A 14 LRKIVSFNLKKEGY--EVIEAENGQIALEKLSEFTPDLIVLXIMM-PVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEED 90 (122)
T ss_dssp HHHHHHHHHHHTTC--EEEEESSHHHHHHHHTTBCCSEEEECSCC-SSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHH
T ss_pred HHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEeccC-CCCcHHHHHHHHHhcccccCCCEEEEecCCchHH
Confidence 44555556665553 3333332233333332 35777764331 2333566776663 357877543 2221
Q ss_pred -ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 208 -TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 208 -~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
....+.|..+++..|.+ ++++..+|..++.
T Consensus 91 ~~~~~~~Ga~~~l~KP~~--~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 91 ESLALSLGARKVMRKPFS--PSQFIEEVKHLLN 121 (122)
T ss_dssp HHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred HHHHHhcChhhhccCCCC--HHHHHHHHHHHhc
Confidence 22345678899999988 9999999988764
No 157
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=58.01 E-value=62 Score=24.91 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=58.5
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE---EEeccc--cCHHHHHhh
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV---HFVNKT--LTVAPYLAA 170 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v---~~~~~~--~~~~~~~~~ 170 (284)
.|-...+..|+.-+.. . . ..-++.++|... .....+.+.+...|-. .| +++|.. .-...-+..
T Consensus 47 ~kT~~~L~~A~~~i~~-i-----~-~~~~iLfVgtk~----~~~~~V~~~A~~~g~~-yv~~~RWlgG~LTN~~t~~~~~ 114 (241)
T 2xzm_B 47 EETWQKIKLAARVIAA-V-----Q-HPEDVMVVCSRI----YGQRAAIKFAGYTHCK-STSSSRWTPGTLTNYQTLKYEE 114 (241)
T ss_dssp HHHHHHHHHHHHHHHH-C-----S-SGGGEEEECCSH----HHHHHHHHHHHHHTCB-CCCCSSCCTTTTTCTTCTTCCC
T ss_pred HHHHHHHHHHHHHHHH-H-----h-CCCeEEEEECCH----HHHHHHHHHHHHhCCE-EeccccccCCcccCccccccCC
Confidence 3445555555554433 2 1 233567788743 1234455666655532 23 345542 111123455
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
-|++++.... .+ ..++.||.-.|+|+|+- |+....+.+ .+.++.+|+
T Consensus 115 PdlliV~Dp~-~e--~~ai~EA~~l~IPvIalvDTn~~p~~V-----Dy~IP~Ndd 162 (241)
T 2xzm_B 115 PRVLIVTDPR-SD--FQAIKEASYVNIPVIALCDSDSPLAYV-----DVVIPCNNR 162 (241)
T ss_dssp CSEEEESCTT-TT--HHHHHHHTTTTCCEEECCCSSSCCTTC-----CEECCSCCS
T ss_pred CCEEEEECCC-cc--hHHHHHHHHhCCCEEEEecCCCCcccc-----cEEEeCCCc
Confidence 6777765431 22 46899999999999975 444444444 355666553
No 158
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=57.80 E-value=54 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 227 ~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
...+++.|.+.+. ||+......+|+.++..+
T Consensus 141 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 173 (291)
T 1pq4_A 141 VKRQATTIAKELAELDPDNRDQYEANLAAFLAE 173 (291)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 5566777766665 777666666666665543
No 159
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=57.67 E-value=35 Score=27.35 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=43.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 199 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pv 199 (284)
++++++.+-+.. .+..+.+.++++.. .. ..++.+++ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 24 ~~~~~~~v~d~~------~~~~~~~~~~~~~~---~~---~~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~gk~V 89 (325)
T 2ho3_A 24 GEYQLVAIYSRK------LETAATFASRYQNI---QL---FDQLEVFFKSSFDLVYIASP--NSLHFAQAKAALSAGKHV 89 (325)
T ss_dssp TSEEEEEEECSS------HHHHHHHGGGSSSC---EE---ESCHHHHHTSSCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeCC------HHHHHHHHHHcCCC---eE---eCCHHHHhCCCCCEEEEeCC--hHHHHHHHHHHHHcCCcE
Confidence 677776544432 34455556655531 11 24677777 67899998876 333344667899999999
Q ss_pred EEcC
Q 023290 200 LGTA 203 (284)
Q Consensus 200 i~~~ 203 (284)
++-.
T Consensus 90 ~~EK 93 (325)
T 2ho3_A 90 ILEK 93 (325)
T ss_dssp EEES
T ss_pred EEec
Confidence 9864
No 160
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=57.60 E-value=59 Score=25.61 Aligned_cols=85 Identities=8% Similarity=-0.027 Sum_probs=47.2
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee---cCCc----eeeecCCCCChHHHHHHHHHHh
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV---NGTT----GLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~---~~~~----g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
.-++.||+++..... .|++=..+++.. + +-++..-....+.. ++.. =++.++.+ ...+++.|.+.+
T Consensus 51 ~~l~~Adlvv~nG~~-lE~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~dPHvWldp~~--~~~~a~~I~~~L 123 (282)
T 3mfq_A 51 SKLQKADLVLYHGLH-FEGKMVEALEKT--G--VAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPL--YKSAVAVASEEL 123 (282)
T ss_dssp HHHHHCSEEEECCTT-SSSSCHHHHHHH--C--EETTTTCCGGGCCEECSSSSCEECCCGGGSHHH--HHHHHHHHHHHH
T ss_pred HHHHcCCEEEEcCcc-hHHHHHHHHHhc--C--cchhhccCcccccccccCCCCCCCCCccCCHHH--HHHHHHHHHHHH
Confidence 457899999987753 777766777764 2 11111110001110 1110 13344444 667788887776
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 023290 239 T--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 239 ~--~~~~~~~~~~~~~~~~~~ 257 (284)
. ||+......+|+.++..+
T Consensus 124 ~~~dP~~a~~y~~N~~~~~~~ 144 (282)
T 3mfq_A 124 QKLLPAKAEMIQKNTEKYQAQ 144 (282)
T ss_dssp TTTCGGGHHHHHHHHHHHHHH
T ss_pred HHhChhhHHHHHHHHHHHHHH
Confidence 5 787777777777665543
No 161
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=57.43 E-value=38 Score=22.32 Aligned_cols=109 Identities=12% Similarity=0.166 Sum_probs=63.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEE-EeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
+++.++.+.. .....+.....+.+. .+. .....++....+ ...|++++-... .+.-|..+++.+. ..
T Consensus 2 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHP----LAIAAIRNLLIKNDI--EILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCH----HHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCH----HHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCC
Confidence 3556666542 256667777776652 332 333334555544 356888765431 2333555555543 35
Q ss_pred CCEEEcCC-C---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 197 LPVLGTAA-G---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 197 ~Pvi~~~~-~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.|+|.... . ...+..+.|..+++..|.+ .+++.++|..++..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHHHTTCSEEEEGGGC--THHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHHHhCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 67764322 2 2234455678889999887 89999999988753
No 162
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=57.11 E-value=20 Score=29.35 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=42.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc--cEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a--d~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+.. .+..+..+++++.. . ...++.+++... |+++..+. ...-.-.+.+|+..|++
T Consensus 29 ~~~~l~av~d~~------~~~~~~~a~~~~~~---~---~~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkh 94 (359)
T 3m2t_A 29 QDIRIVAACDSD------LERARRVHRFISDI---P---VLDNVPAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSKGVN 94 (359)
T ss_dssp TTEEEEEEECSS------HHHHGGGGGTSCSC---C---EESSHHHHHHHSCCSEEEECSC--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHHHHHHHhcCCC---c---ccCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCe
Confidence 778877554432 24444444443321 1 126888888865 88888775 33333457789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 95 Vl~EK 99 (359)
T 3m2t_A 95 VFVEK 99 (359)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99853
No 163
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=57.08 E-value=42 Score=26.70 Aligned_cols=88 Identities=17% Similarity=0.058 Sum_probs=49.6
Q ss_pred HHHHhhccEEEEcCCCCcCc----cchhHHHHHhcC--CCEEEcCCCCccee-ee----cC-Cc-eeeecCCCCChHHHH
Q 023290 165 APYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQ--LPVLGTAAGGTTEI-VV----NG-TT-GLLHPVGKEGITPLA 231 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~----~~~~~~Eama~G--~Pvi~~~~~~~~e~-v~----~~-~~-g~~~~~~d~~~~~~~ 231 (284)
..-++.||++|..... .|+ |--.+++..... .++|....+ +... .. ++ .+ =++.++.+ ...++
T Consensus 61 ~~~l~~Adlvv~~G~~-lE~~~~~w~~k~~~~~~~~~~~~~v~~s~g-i~~~~~~~~~~~~~~dPHvWldp~~--~~~~a 136 (294)
T 3hh8_A 61 AEKTSNADVIFYNGIN-LEDGGQAWFTKLVKNAQKTKNKDYFAVSDG-IDVIYLEGASEKGKEDPHAWLNLEN--GIIYS 136 (294)
T ss_dssp HHHHHHCSEEEECCTT-SSCSTTSHHHHHHHHTTCCBTTTEEETTTT-SCCCBSTTCCSTTCBCCCGGGSHHH--HHHHH
T ss_pred HHHHHhCCEEEEcCCC-ccchHHHHHHHHHHhccccCCceEEEccCC-cccccCCCccCCCCCCCceeCCHHH--HHHHH
Confidence 3558899999987653 565 666777776543 567654322 1111 00 00 00 12344433 56667
Q ss_pred HHHHHHhh--CHHHHHHHHHHHHHHHH
Q 023290 232 KNIVKLAT--HVERRLTMGKRGYERVK 256 (284)
Q Consensus 232 ~~i~~l~~--~~~~~~~~~~~~~~~~~ 256 (284)
+.|.+.+. ||+......+|+.++..
T Consensus 137 ~~I~~~L~~~dP~~a~~y~~N~~~~~~ 163 (294)
T 3hh8_A 137 KNIAKQLIAKDPKNKETYEKNLKAYVA 163 (294)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 77776665 77766666666665554
No 164
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.96 E-value=41 Score=22.50 Aligned_cols=107 Identities=9% Similarity=0.205 Sum_probs=59.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~P 198 (284)
+++++.+.. .....+.......+. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 6 ~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDST----SLAILYKQYVKDEPY--DIFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCT----THHHHHHHHTTTSSS--EEEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhcCc--eEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 556666543 144555555554433 3433333233333332 46888764331 2223455555543 4567
Q ss_pred EEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 199 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 199 vi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|.. .... ..+.++.|..+++..|.+ .+++...|..++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPIN--ADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 7654 3222 223445677889999988 9999999987764
No 165
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=56.76 E-value=46 Score=26.90 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+.. .+..+...+++++. . ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 25 ~~~~l~av~d~~------~~~~~~~~~~~~~~-~-----~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 90 (344)
T 3ezy_A 25 DDAILYAISDVR------EDRLREMKEKLGVE-K-----AYKDPHELIEDPNVDAVLVCSS--TNTHSELVIACAKAKKH 90 (344)
T ss_dssp TTEEEEEEECSC------HHHHHHHHHHHTCS-E-----EESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECCC------HHHHHHHHHHhCCC-c-----eeCCHHHHhcCCCCCEEEEcCC--CcchHHHHHHHHhcCCe
Confidence 778777554432 35556667776642 1 1257888888 7999998776 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 91 v~~EK 95 (344)
T 3ezy_A 91 VFCEK 95 (344)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99764
No 166
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=56.74 E-value=31 Score=23.02 Aligned_cols=109 Identities=7% Similarity=0.105 Sum_probs=61.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcC--ccchhHHHHHh---
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGE--CFGRITIEAMA--- 194 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e--~~~~~~~Eama--- 194 (284)
..++.++.+.. .....+.......|. .|.......+....+ ...|++++-... .+ .-|..+++.+.
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQK----DARAALSKLLSPLDV--TIQCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHTTSSS--EEEEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCC
Confidence 35667776543 245556666665543 343333222222222 236787765431 23 33455555543
Q ss_pred cCCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 ~G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|+|... ... ..+.++.|..+++..|.+ .+++..+|..+..
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 125 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFI--EHVLVHDVQQIIN 125 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBC--HHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCC--HHHHHHHHHHHHh
Confidence 367887543 222 233455688899999988 9999999988875
No 167
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=56.73 E-value=68 Score=25.00 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=59.2
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC---------hHHHHHHHHHHHHcCCCCcEEEec
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~---------~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
..|- ......+..++.+..+.+ -...++..+...+.. .+....+++..++.|++--...+.
T Consensus 27 IAgp-c~~~~~e~a~~~a~~l~~---------~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d 96 (262)
T 1zco_A 27 IAGP-CSIESREQIMKVAEFLAE---------VGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMD 96 (262)
T ss_dssp EEEC-SBCCCHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred EEeC-CCCCCHHHHHHHHHHHHH---------cCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 4454 445567777777766655 344455555422111 335667778888887642222222
Q ss_pred cccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcCC
Q 023290 160 KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTAA 204 (284)
Q Consensus 160 ~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~~ 204 (284)
. ..+..+-..+|++=.+|+ +.....++++++ .|+||+.+.-
T Consensus 97 ~-~~~~~l~~~vd~~kIga~---~~~n~~ll~~~a~~~kPV~lk~G 138 (262)
T 1zco_A 97 T-RHVELVAKYSDILQIGAR---NSQNFELLKEVGKVENPVLLKRG 138 (262)
T ss_dssp G-GGHHHHHHHCSEEEECGG---GTTCHHHHHHHTTSSSCEEEECC
T ss_pred H-HhHHHHHhhCCEEEECcc---cccCHHHHHHHHhcCCcEEEecC
Confidence 2 344444445899999986 444455555554 7999998753
No 168
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=56.32 E-value=33 Score=27.12 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=47.9
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhc-CCCEEEcCCCCccee-e---e-------cC-----CceeeecCCCCChH
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI-V---V-------NG-----TTGLLHPVGKEGIT 228 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~-G~Pvi~~~~~~~~e~-v---~-------~~-----~~g~~~~~~d~~~~ 228 (284)
.-++.||++|..... .|+|--.+++++.. ++++|.... ++.-. . . ++ .-=++.++.+ ..
T Consensus 54 ~~l~~Adlvv~~G~~-lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~~ 129 (284)
T 3cx3_A 54 AAIYDADVFVYHSHT-LESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEK--AG 129 (284)
T ss_dssp HHHHHSSEEEESCTT-TSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHH--HH
T ss_pred HHHHhCCEEEEcCCC-cHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHH--HH
Confidence 458899999987653 67776677766643 345554322 21100 0 0 00 0013333333 55
Q ss_pred HHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 023290 229 PLAKNIVKLAT--HVERRLTMGKRGYERVKE 257 (284)
Q Consensus 229 ~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~ 257 (284)
.+++.|.+.+. ||+......+|+.++..+
T Consensus 130 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 160 (284)
T 3cx3_A 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKK 160 (284)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 66777766655 777666666666665543
No 169
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=56.02 E-value=57 Score=23.89 Aligned_cols=111 Identities=11% Similarity=0.171 Sum_probs=59.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---------------hccEEEEcCCCCcCccc
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------------AIDVLVQNSQAWGECFG 186 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------~ad~~~~ps~~~~e~~~ 186 (284)
..+++++-+.. .....+..+....|.. .|.......+...++. ..|++|+-..- .+.-|
T Consensus 61 ~~~ILiVdDd~----~~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~l-p~~~G 134 (206)
T 3mm4_A 61 GKRVLVVDDNF----ISRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQM-PEMDG 134 (206)
T ss_dssp TCEEEEECSCH----HHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCC-SSSCH
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCC-CCCCH
Confidence 44566665532 2455566666666542 3444433334444443 46888764431 22335
Q ss_pred hhHHHHHh-------cCCCEEEcCCCC-----cceeeecCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 187 RITIEAMA-------FQLPVLGTAAGG-----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 187 ~~~~Eama-------~G~Pvi~~~~~~-----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
..+++.+. ..+|||...... ..+.++.|..+++..|- +++..+|..++....
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~----~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL----NQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTC----TTHHHHHHHHC----
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcH----HHHHHHHHHHHhhhH
Confidence 55555543 467888543222 22344567788888874 378888888876443
No 170
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=55.99 E-value=36 Score=25.11 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=57.7
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh---cCCCEE
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA---FQLPVL 200 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi 200 (284)
++.++.+.+ .....+.......+ .|.......+....+...|++++-..- .+.-|..+++.+. ..+|+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~---~v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 4 KIAVVDDDK----NILKKVSEKLQQLG---RVKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp EEEEECSCH----HHHHHHHHHHTTTE---EEEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEEE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhCC---CEEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcEE
Confidence 455555432 24444555554433 333333222222222567888764331 2223455555443 467877
Q ss_pred EcCC-CC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 201 GTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 201 ~~~~-~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.... .. ....++.|..+++..|.+ ++++..+|..++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFN--PEILLARVKRFLE 116 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 5432 22 223445678899999888 9999999988764
No 171
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=54.91 E-value=24 Score=25.38 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHH---HHhcCCCEEEc
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGT 202 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~E---ama~G~Pvi~~ 202 (284)
..+..||++|.--.. .+.=+.+.+| |.+.|+||++-
T Consensus 65 ~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDG-PTIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCCEEEEE
Confidence 458999998864321 1112334444 68899999975
No 172
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=54.58 E-value=72 Score=25.99 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=42.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+.. .+.. +.+++.++. ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~~------~~~~-~~a~~~g~~-------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 91 (359)
T 3e18_A 28 DNLEVHGVFDIL------AEKR-EAAAQKGLK-------IYESYEAVLADEKVDAVLIATP--NDSHKELAISALEAGKH 91 (359)
T ss_dssp TTEEEEEEECSS------HHHH-HHHHTTTCC-------BCSCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHH-HHHHhcCCc-------eeCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 678877555432 1222 234554431 2368888887 7899988776 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 92 Vl~EK 96 (359)
T 3e18_A 92 VVCEK 96 (359)
T ss_dssp EEEES
T ss_pred EEeeC
Confidence 99754
No 173
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=54.08 E-value=43 Score=21.84 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...++.++.+.. .....+.......+.. .+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 3 ~~~~ilivdd~~----~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~~~l~~~~~ 76 (128)
T 1jbe_A 3 KELKFLVVDDFS----TMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELLKTIRAXXA 76 (128)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHHHHHHC--C
T ss_pred CccEEEEECCCH----HHHHHHHHHHHHcCCc-EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 345666776542 2456666666665542 3443333333333433 35888764431 22335566766653
Q ss_pred --CCCEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 196 --QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 --G~Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|+|.. .... ..+.++.|..+++..|.+ .+++..+|..++.
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 77 MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT--AATLEEKLNKIFE 124 (128)
T ss_dssp CTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCccHHHHHHHHHhCcCceeecCCC--HHHHHHHHHHHHH
Confidence 5677754 3222 223445677889999988 8999999887653
No 174
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.00 E-value=47 Score=22.05 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=61.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh---hccEEEEcCCCCcCccchhHHHHHhc--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF-- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~---~ad~~~~ps~~~~e~~~~~~~Eama~-- 195 (284)
+..+++++.+.. .....+.......|. .|.......+....+. ..|++++-... .+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 14 QPFRVTLVEDEP----SHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHHHHHHHTTSS
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 566667766543 245566666666554 3443333333333333 46888765431 22235566666643
Q ss_pred -CCCEEEc--CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhhCH
Q 023290 196 -QLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 241 (284)
Q Consensus 196 -G~Pvi~~--~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~ 241 (284)
.+|+|.. ....... ...-..+++..+.+ .+++...|..++...
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEHNLSYLQKPFA--ISELRAAIDYHKPSM 132 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSSCEEEEESSCC--HHHHHHHHHHTCCC-
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHheeeCCCC--HHHHHHHHHHHHHhc
Confidence 5777643 2222211 11115678888887 999999998887653
No 175
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=52.95 E-value=45 Score=21.73 Aligned_cols=110 Identities=8% Similarity=0.051 Sum_probs=63.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA----- 194 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama----- 194 (284)
..+++++.+.. .....+....++.|. .|.......+....+. ..|++++-... .+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 75 (127)
T 3i42_A 3 LQQALIVEDYQ----AAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPME 75 (127)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCS
T ss_pred cceEEEEcCCH----HHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhcc
Confidence 34566666543 256667777777654 3444443334444443 46887764331 2334556665553
Q ss_pred cCCCEEEcCC-CC--cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 195 FQLPVLGTAA-GG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 195 ~G~Pvi~~~~-~~--~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..+|+|.... .. .......|..+++..|-+ ++++.+++......
T Consensus 76 ~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDLGKEACELFDFYLEKPID--IASLEPILQSIEGH 122 (127)
T ss_dssp SCCEEEEEECC-CTTCCHHHHHHCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred CCCCEEEEECCcchhHHHHHHHhhHHheeCCCC--HHHHHHHHHHhhcc
Confidence 4577775422 21 133445567889999988 99999999887653
No 176
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=52.86 E-value=71 Score=24.01 Aligned_cols=164 Identities=12% Similarity=0.041 Sum_probs=99.6
Q ss_pred EEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeE-EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc------
Q 023290 88 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK------ 160 (284)
Q Consensus 88 ~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~-l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~------ 160 (284)
-|+||...+||+-.+.+.-.++.+ |.-+ -++-|-.. . ..+ -.+++.|++ ..+.|.
T Consensus 201 rwigrtttwkgfyqmfdfhekflk---------pagkstvmegler--s----paf-iaikekgip--yeyygnreidkm 262 (401)
T 1xv5_A 201 RWIGRTTTWKGFYQMFDFHEKFLK---------PAGKSTVMEGLER--S----PAF-IAIKEKGIP--YEYYGNREIDKM 262 (401)
T ss_dssp EEECCSCGGGCHHHHHHHHHHTTT---------TTTCEEEEECCCC--S----HHH-HHHHHTTCC--EEEECGGGGGGC
T ss_pred hhhcccchhHhHHHHhhHHHHhcC---------ccchhhhhhhhhc--C----Cce-EEEcccCCc--hhhcCcchhhhh
Confidence 478999999999999887777654 3223 34444321 1 111 234455553 222222
Q ss_pred --------------c-cCHHHHHhhccEEEEcCCCC----cCccchhHHHHHhcCCCEEEcC-CCCc-------ceeeec
Q 023290 161 --------------T-LTVAPYLAAIDVLVQNSQAW----GECFGRITIEAMAFQLPVLGTA-AGGT-------TEIVVN 213 (284)
Q Consensus 161 --------------~-~~~~~~~~~ad~~~~ps~~~----~e~~~~~~~Eama~G~Pvi~~~-~~~~-------~e~v~~ 213 (284)
. .++.+-|+.+.+....|... .-+...+-+|--|||...|--. .|.. .-+..+
T Consensus 263 nlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltsh 342 (401)
T 1xv5_A 263 NLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSH 342 (401)
T ss_dssp CCSSSCCEEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGS
T ss_pred cCCCCCcchhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCccccc
Confidence 1 35566677777666554310 1234567889999997555432 1111 112222
Q ss_pred CCceeeecCCCCChHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 023290 214 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 271 (284)
Q Consensus 214 ~~~g~~~~~~d~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (284)
...-+.++.+| .++-.+.|.++-+|..++.+-.+++++.+-++-+..-..++-.++
T Consensus 343 dsgiiwfdend--mestferikelssdralydrerekayeflyqhqdssfcfkeqfdi 398 (401)
T 1xv5_A 343 DSGIIWFDEND--MESTFERIKELSSDRALYDREREKAYEFLYQHQDSSFCFKEQFDI 398 (401)
T ss_dssp CCSCEEECTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHBHHHHHHHHHHH
T ss_pred CCceEEecCCc--hHHHHHHHHHhccchhhhhHHHHHHHHHHHhcccccchhHhhccc
Confidence 22335667666 999999999999999999999999999887766665555444443
No 177
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=52.80 E-value=48 Score=22.10 Aligned_cols=108 Identities=8% Similarity=0.015 Sum_probs=58.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh------
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA------ 194 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama------ 194 (284)
.+++++.+.. .....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+.
T Consensus 11 ~~iLivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 11 LSVLIAEDND----ICRLVAAKALEKCTN--DITVVTNGLQALQAYQNRQFDVIIMDIQM-PVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHTTTCS--EEEEESSHHHHHHHHHHSCCSEEEECTTC-CSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--ceEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhhhhhc
Confidence 4566666542 234445555554432 3444433333333333 36888865431 2223455555553
Q ss_pred --cCCCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 --FQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 --~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
...|+|.. ...........+..+++..|.+ .+++..+|..++.
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 129 (140)
T 3c97_A 84 NTKRASIIAITADTIDDDRPGAELDEYVSKPLN--PNQLRDVVLTCHS 129 (140)
T ss_dssp TCCCCCCEEEESSCCSCCCCCSSCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCCceEEEEEeCccchhHHHhCChhheEeCCCC--HHHHHHHHHHHhC
Confidence 34666643 3222223334566789999988 9999999988765
No 178
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=52.69 E-value=45 Score=21.65 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=58.5
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----cC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 196 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~G 196 (284)
++.++.+.. .....+.......|. .+.......+....+. ..|++++-... .+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 76 (127)
T 2jba_A 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLAWML-PGGSGIQFIKHLRRESMTRD 76 (127)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHTTCSSSCCSEEEEESEE-TTEEHHHHHHHHHTSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhCcccCC
Confidence 455555532 245556666665544 2333322222222222 35777754331 2223556666654 46
Q ss_pred CCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.|+|... ... ..+.++.|..+++..|.+ ++++..+|..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 121 (127)
T 2jba_A 77 IPVVMLTARGEEEDRVRGLETGADDCITKPFS--PKELVARIKAVMR 121 (127)
T ss_dssp SCEEEEEETTHHHHHHTTCCCSCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 7877542 221 233455677889999888 9999999887654
No 179
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=52.29 E-value=61 Score=23.13 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHhhccEEEEcC---CCCcCccchhHHH---HHhcCCCEEEcC
Q 023290 165 APYLAAIDVLVQNS---QAWGECFGRITIE---AMAFQLPVLGTA 203 (284)
Q Consensus 165 ~~~~~~ad~~~~ps---~~~~e~~~~~~~E---ama~G~Pvi~~~ 203 (284)
...+..||++|.-- +. .+.=+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g-~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRG-HEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSS-SSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCC-CCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 46789999987542 11 1222345555 678999999853
No 180
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=52.19 E-value=13 Score=26.36 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
...+..||+++..-..-..|.+.=+-=|.+.|+||++-
T Consensus 63 ~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l 100 (152)
T 4fyk_A 63 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCL 100 (152)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 35689999998643210122222233478899999983
No 181
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=51.93 E-value=18 Score=24.13 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=31.5
Q ss_pred EEEEecCCCCChH-HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++++|.|. .... ....+++.+++.++...|...+. .++...+..+|+++.+..
T Consensus 25 lvvC~sG~-gTS~ll~~kl~~~~~~~gi~~~V~~~~~-~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 25 IVACGGAV-ATSTMAAEEIKELCQSHNIPVELIQCRV-NEIETYMDGVHLICTTAR 78 (113)
T ss_dssp EEESCSCS-SHHHHHHHHHHHHHHHTTCCEEEEEECT-TTTTTSTTSCSEEEESSC
T ss_pred EEECCCCH-HHHHHHHHHHHHHHHHcCCeEEEEEecH-HHHhhccCCCCEEEECCc
Confidence 34445443 3223 36778888888877533444332 344445678999998765
No 182
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=51.69 E-value=48 Score=21.72 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHhc---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAF--- 195 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama~--- 195 (284)
...+++++.+.. .....+.....+.+. .|.......+....+ ...|++++-... .+.-|..+++.+..
T Consensus 5 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 5 QSKRILVVDDDQ----AMAAAIERVLKRDHW--QVEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHHHHHTTTC
T ss_pred CCccEEEEECCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCc
Confidence 345667776543 255666666666554 344443333433333 346887765441 33345666766643
Q ss_pred --CCCEEEcCCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 --QLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 --G~Pvi~~~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..|+|.+.... ..+.++.|..+++..|.+ ++++.++|......
T Consensus 78 ~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 78 ANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFD--NDALLDRIHDLVNE 125 (132)
T ss_dssp SSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCC--HHHHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCC--HHHHHHHHHHHcCC
Confidence 34455443322 223445678899999988 99999999887653
No 183
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=50.75 E-value=67 Score=25.78 Aligned_cols=69 Identities=4% Similarity=-0.022 Sum_probs=42.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++-+-+..+ +..+.+.++++. + ....++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 27 ~~~~lvav~d~~~------~~~~~~a~~~~~---~---~~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 92 (336)
T 2p2s_A 27 AGAELAGVFESDS------DNRAKFTSLFPS---V---PFAASAEQLITDASIDLIACAVI--PCDRAELALRTLDAGKD 92 (336)
T ss_dssp TTCEEEEEECSCT------TSCHHHHHHSTT---C---CBCSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEeCCCH------HHHHHHHHhcCC---C---cccCCHHHHhhCCCCCEEEEeCC--hhhHHHHHHHHHHCCCc
Confidence 6777765544322 223345555532 1 12257888886 6899988775 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 93 Vl~EK 97 (336)
T 2p2s_A 93 FFTAK 97 (336)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99853
No 184
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=50.34 E-value=28 Score=27.56 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=45.0
Q ss_pred cccccc-HHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC--hHHHHHHHHHHHH-cCCCCcEE-EeccccCHHHH
Q 023290 93 VSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ--TKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAPY 167 (284)
Q Consensus 93 ~~~~k~-~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~--~~~~~~l~~~~~~-~~~~~~v~-~~~~~~~~~~~ 167 (284)
++|.|. .+.+.+.+..+.+ .....+++| ...-. .+....+...+++ ..++ -|. |.+...+...+
T Consensus 45 iDPdK~~~~~~~~~~~~~~~---------sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lP-vil~fPP~~g~~~~i 113 (286)
T 3vk5_A 45 IDPFKVPVTEAVEKAAELTR---------LGFAAVLLA-STDYESFESHMEPYVAAVKAATPLP-VVLHFPPRPGAGFPV 113 (286)
T ss_dssp ECTTTSCHHHHHHHHHHHHH---------TTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSC-EEEECCCBTTTBSCC
T ss_pred ECCCCCCcHHHHHHHHHHHh---------cCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCC-EEEECCCCCCCcccc
Confidence 577774 4454555555544 455668889 33222 2344555556666 6665 344 66333344555
Q ss_pred HhhccEEEEcCC
Q 023290 168 LAAIDVLVQNSQ 179 (284)
Q Consensus 168 ~~~ad~~~~ps~ 179 (284)
...+|.+++||.
T Consensus 114 ~~~aDa~l~psv 125 (286)
T 3vk5_A 114 VRGADALLLPAL 125 (286)
T ss_dssp CTTCSEEEEEEE
T ss_pred ccCCCEEEEEEE
Confidence 679999999987
No 185
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=49.86 E-value=1.1e+02 Score=25.85 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcC--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ-- 196 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G-- 196 (284)
++++++-+-+. ..+..+.++++++++. +.. ..++.+++. ..|+++..+. ...-.-.+.+|+..|
T Consensus 48 ~~~~lvav~d~------~~~~~~~~a~~~g~~~-~~~---~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aG~~ 115 (438)
T 3btv_A 48 SQFQITALYSP------KIETSIATIQRLKLSN-ATA---FPTLESFASSSTIDMIVIAIQ--VASHYEVVMPLLEFSKN 115 (438)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCTT-CEE---ESSHHHHHHCSSCSEEEECSC--HHHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-cee---eCCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHCCCC
Confidence 56777655543 2355667777777642 222 247778886 5899998775 332334566899999
Q ss_pred ----CCEEEcC
Q 023290 197 ----LPVLGTA 203 (284)
Q Consensus 197 ----~Pvi~~~ 203 (284)
++|++-.
T Consensus 116 ~~~~khVl~EK 126 (438)
T 3btv_A 116 NPNLKYLFVEW 126 (438)
T ss_dssp CTTCCEEEEES
T ss_pred cccceeEEecC
Confidence 9999864
No 186
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=49.09 E-value=45 Score=21.43 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=57.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH---hcCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam---a~G~P 198 (284)
++.++.+.. .....+.......+. .+.......+....+. ..|++++-... .+.-|..+++.+ ..+.|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1dc7_A 5 IVWVVDDDS----SIRWVLERALAGAGL--TCTTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQIKQRHPMLP 77 (124)
T ss_dssp CCEEECSSS----SHHHHHHHHHTTTTC--CCEECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHHHHHHCTTSC
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHHHHhhCCCCC
Confidence 345555543 145566666665443 3443333344444443 36787764431 111123333333 34677
Q ss_pred EEEcC-CC---CcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 199 VLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 199 vi~~~-~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|... .. .....++.|..+++..|.+ ++++...|..++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~ 119 (124)
T 1dc7_A 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERAI 119 (124)
T ss_dssp CCCBCCSTTSTTTTSSCTTCCCCCBCSSCC--HHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCcceEeeCCCC--HHHHHHHHHHHH
Confidence 77532 22 2334555677788988887 899999887765
No 187
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=48.94 E-value=94 Score=24.31 Aligned_cols=62 Identities=5% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-----cCHHHHHhhccEEEEcCCCCcCccchhHHHH
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
..-.++++|+|-.+.+ .++.+...+...-.|+. +....+...+|++++-.. .-.....++|.
T Consensus 229 ~~~~v~~vGDGiNDa~--------m~k~l~~advgiaiGfl~~~v~~~~d~~~e~~Divl~~d~--~~~v~~~il~~ 295 (297)
T 4fe3_A 229 DNSNIILLGDSQGDLR--------MADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEE--SLEVVNSILQK 295 (297)
T ss_dssp TCCEEEEEESSGGGGG--------TTTTCSCCSEEEEEEEECSSHHHHHHHHHHHSSEEEETCC--BCHHHHHHHHH
T ss_pred cCCEEEEEeCcHHHHH--------HHhCccccCeEEEEEecchhHHHhHHHHHhhCCEEEECCC--ChHHHHHHHHh
Confidence 3446778899864321 11112222333444432 344556789999997654 33334445554
No 188
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=48.84 E-value=56 Score=21.63 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=65.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEE-eccccCHHHHHh--hccEEEEcCCCCc-CccchhHHHHHh--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA-- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~-~~~~~~~~~~~~--~ad~~~~ps~~~~-e~~~~~~~Eama-- 194 (284)
...+++++.+.. .....+.......|. .+.. .....+....+. ..|++++-... . +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~~-~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGR----LAAATLRIQLESLGY--DVLGVFDNGEEAVRCAPDLRPDIALVDIML-CGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBH----HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-CSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCH----HHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCCHHHHHHHHHhC
Confidence 456777777643 255667777776654 3442 333334444443 46888865431 1 223444554443
Q ss_pred cCCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 ~G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|+|... ... ....++.|..+++..|.+ .+++...|..++.
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVA--ADTLHRSIEMAIH 127 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 578888543 222 123445677889999887 9999999988765
No 189
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=48.84 E-value=67 Score=23.61 Aligned_cols=94 Identities=10% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--c-CCCEEEcCCC-C---cc
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F-QLPVLGTAAG-G---TT 208 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~-G~Pvi~~~~~-~---~~ 208 (284)
....+.......+. .|.......+....+. ..|++++|.. . |..+++.+. . .+|+|.-... . ..
T Consensus 12 ~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilp~~---~--g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~ 84 (223)
T 2hqr_A 12 LGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSDK---N--ALSFVSRIKEKHSSIVVLVSSDNPTSEEEV 84 (223)
T ss_dssp HHHHHHHHHGGGTC--CEEEESSHHHHHHHHTTSCCSEEEECCT---T--HHHHHHHHHHHCTTSEEEEEESSCCHHHHH
T ss_pred HHHHHHHHHHHCCc--EEEEECCHHHHHHHHhcCCCCEEEeCCC---C--HHHHHHHHHhCCCCCcEEEEECCCCHHHHH
Confidence 44555555555444 3433333233333333 4588884432 2 444554443 3 6787754322 2 22
Q ss_pred eeeecCCceeeecCC-CCChHHHHHHHHHHhhC
Q 023290 209 EIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 240 (284)
Q Consensus 209 e~v~~~~~g~~~~~~-d~~~~~~~~~i~~l~~~ 240 (284)
..+..|..+++..|. + ++++..+|..++..
T Consensus 85 ~~~~~Ga~~~l~Kp~~~--~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 85 HAFEQGADDYIAKPYRS--IKALVARIEARLRF 115 (223)
T ss_dssp HHHHHTCSEEEETTCSC--THHHHHHHHHHTSS
T ss_pred HHHHcCCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 344567889999988 8 89999999988753
No 190
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=48.25 E-value=80 Score=23.31 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=64.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
..++.++.+.+ .....+.......+. .|.......+....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDS----DVLASLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVTALRAMDND 79 (233)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45667776643 245666666666554 3443333233333333 46888764431 2233555665553 47
Q ss_pred CCEEEcC-CC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~~-~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|+|... .. ...+.++.|..+++..|.+ ++++..+|..++.
T Consensus 80 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFV--LAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTTTTTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 8888542 22 2234455677899999988 9999999988764
No 191
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=48.02 E-value=55 Score=21.31 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=62.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----c
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~ 195 (284)
.++.++.+.. .....+.......|.. .+.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 7 ~~ilivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 7 IKVLIVDDQV----TSRLLLGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQAVRANPATK 80 (129)
T ss_dssp CCEEEECSSH----HHHHHHHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHHHHTTCTTST
T ss_pred CeEEEEcCCH----HHHHHHHHHHHHCCCc-EEEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHHHHhcCcccc
Confidence 4566666542 2455666666655431 3433333233434443 36888764431 2233556676664 3
Q ss_pred CCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 196 QLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 196 G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|+|....... .+.++.|..+++..|.+ .+++..+|..++.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKAAALGANNVLAKPFT--IEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHHHHHTCSCEECCCSS--HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 567775433222 23445677889999887 9999999887653
No 192
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=48.02 E-value=88 Score=23.69 Aligned_cols=127 Identities=6% Similarity=0.057 Sum_probs=60.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.+..++++... ....++.++.+. .+.+....-+ ...+..+|+++..+- .......+.++.-.|+||-
T Consensus 53 ~GA~VtVvap~------~~~~l~~l~~~~----~i~~i~~~~~-~~dL~~adLVIaAT~--d~~~N~~I~~~ak~gi~VN 119 (223)
T 3dfz_A 53 EGAAITVVAPT------VSAEINEWEAKG----QLRVKRKKVG-EEDLLNVFFIVVATN--DQAVNKFVKQHIKNDQLVN 119 (223)
T ss_dssp GCCCEEEECSS------CCHHHHHHHHTT----SCEEECSCCC-GGGSSSCSEEEECCC--CTHHHHHHHHHSCTTCEEE
T ss_pred CCCEEEEECCC------CCHHHHHHHHcC----CcEEEECCCC-HhHhCCCCEEEECCC--CHHHHHHHHHHHhCCCEEE
Confidence 34566666543 234566666653 3444433211 234678999987664 3333344555545899999
Q ss_pred EcCCCCccee-----eecCCceeeecCCCCC---hHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcC
Q 023290 201 GTAAGGTTEI-----VVNGTTGLLHPVGKEG---ITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 260 (284)
Q Consensus 201 ~~~~~~~~e~-----v~~~~~g~~~~~~d~~---~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~ 260 (284)
+.|.+....+ +..+..-+-+..+-.+ ...+.+.|+.++. +-....+.....|+.+++.+.
T Consensus 120 vvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 120 MASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp C-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCS
T ss_pred EeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCC
Confidence 8887765544 4444333444442221 2233344444443 223333444455555555443
No 193
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=47.94 E-value=35 Score=27.44 Aligned_cols=41 Identities=15% Similarity=-0.075 Sum_probs=27.6
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
++.+++..+|+++..+. ....--.+..++..|++||+....
T Consensus 51 d~~~ll~~~DvViiatp--~~~h~~~~~~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 51 DVDKHADDVDVLFLCMG--SATDIPEQAPKFAQFACTVDTYDN 91 (320)
T ss_dssp GGGGTTTTCSEEEECSC--TTTHHHHHHHHHTTTSEEECCCCC
T ss_pred CHHHHhcCCCEEEEcCC--cHHHHHHHHHHHHCCCEEEECCCC
Confidence 34444578999998775 222223456788899999987644
No 194
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=47.48 E-value=26 Score=29.82 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=40.4
Q ss_pred HHHHhhccEEEEcCCCCcCccchh--HHHHHh---------cCCCEEEcCC---CC-cce---ee----ecC-Cceeeec
Q 023290 165 APYLAAIDVLVQNSQAWGECFGRI--TIEAMA---------FQLPVLGTAA---GG-TTE---IV----VNG-TTGLLHP 221 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~~--~~Eama---------~G~Pvi~~~~---~~-~~e---~v----~~~-~~g~~~~ 221 (284)
..+...||++|.- ..|+|+- ++|++. .++|||..+. .+ ... ++ .+. ...+++-
T Consensus 240 ~~mv~~SDAfIaL----PGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~iiv 315 (460)
T 3bq9_A 240 EAFVRCAHGIVIF----PGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKII 315 (460)
T ss_dssp HHHHHHCSEEEEC----SCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEEE
T ss_pred HHHHHhCCEEEEc----CCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEEE
Confidence 3456889998854 3556642 667777 4899998752 22 111 11 111 1222222
Q ss_pred CCCCChHHHHHHHHHHhhC
Q 023290 222 VGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 222 ~~d~~~~~~~~~i~~l~~~ 240 (284)
.+| ++++.+.+...+..
T Consensus 316 ~dd--peEal~~l~~~~~~ 332 (460)
T 3bq9_A 316 IDD--PAAVAQHMHAGMAA 332 (460)
T ss_dssp ESC--HHHHHHHHHHHHHH
T ss_pred eCC--HHHHHHHHHHHHHH
Confidence 334 89999988877654
No 195
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=47.44 E-value=89 Score=23.57 Aligned_cols=109 Identities=7% Similarity=0.031 Sum_probs=58.6
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh---cC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA---FQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama---~G 196 (284)
..++.++-+.. .....+.......+. .|.......+....+ ...|++++-..- .+.-|..+++.+. ..
T Consensus 23 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~ 95 (250)
T 3r0j_A 23 EARVLVVDDEA----NIVELLSVSLKFQGF--EVYTATNGAQALDRARETRPDAVILDVXM-PGMDGFGVLRRLRADGID 95 (250)
T ss_dssp SCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 34555555432 234445555554443 233222222333333 246777764331 2233455555543 35
Q ss_pred CCEEEcCC-CCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGTAA-GGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~~~-~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|||.... ... .+.++.|..+++..|.+ ++++..+|..++.
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~--~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 96 APALFLTARDSLQDKIAGLTLGGDDYVTKPFS--LEEVVARLRVILR 140 (250)
T ss_dssp CCEEEEECSTTHHHHHHHHTSTTCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 78775432 221 23445678899999988 9999999998865
No 196
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.33 E-value=58 Score=21.42 Aligned_cols=109 Identities=8% Similarity=0.034 Sum_probs=61.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~ 197 (284)
.++.++.+.. .....+.......|. .+.......+....+. ..|++++-... .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (136)
T 1mvo_A 4 KKILVVDDEE----SIVTLLQYNLERSGY--DVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCKQLRQQKLMF 76 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCc--EEEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHcCCCCC
Confidence 3556666542 245556666666554 3443333233333332 46888764331 2223455555543 457
Q ss_pred CEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 198 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 198 Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
|+|.. .... ....++.|..+++..|.+ .+++...|..++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLGLELGADDYMTKPFS--PREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHhCCCCEEEECCCC--HHHHHHHHHHHHHh
Confidence 77743 3222 223445678899999988 99999999888764
No 197
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=47.32 E-value=1e+02 Score=24.24 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHH-hcCCCEEEcCC
Q 023290 137 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 204 (284)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~ 204 (284)
+....+++.+++.|++--...++. ..+..+-..+|++=.+|+ +.....+++++ ..|+||+.+.-
T Consensus 89 ~gl~~l~~~~~~~Gl~~~te~~d~-~~~~~l~~~vd~~kIgs~---~~~n~~ll~~~a~~~kPV~lk~G 153 (276)
T 1vs1_A 89 EGLKLLRRAGDEAGLPVVTEVLDP-RHVETVSRYADMLQIGAR---NMQNFPLLREVGRSGKPVLLKRG 153 (276)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCG-GGHHHHHHHCSEEEECGG---GTTCHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEecCCH-HHHHHHHHhCCeEEECcc---cccCHHHHHHHHccCCeEEEcCC
Confidence 456778888889887532222332 344444445899999996 44455566555 47999998753
No 198
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=47.02 E-value=55 Score=21.10 Aligned_cols=107 Identities=8% Similarity=0.083 Sum_probs=58.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCCE
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 199 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~Pv 199 (284)
++.++.+.. .....+.......|. .+.......+....+. ..|++++-..- .+.-|..+++.+. .+.|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 4 KILVVDDEK----PIADILEFNLRKEGY--EVHCAHDGNEAVEMVEELQPDLILLDIML-PNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCSEEEEETTS-TTTHHHHHHHHHHTTCCSCE
T ss_pred eEEEEECCH----HHHHHHHHHHHhCCE--EEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCE
Confidence 445555432 245556666665553 3433332233333332 46777764331 2223455555443 36787
Q ss_pred EEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 200 LGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 200 i~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
|....... ...++.|..+++..|.+ .+++..++..++.
T Consensus 77 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFS--TRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHh
Confidence 75432221 23445678899999988 9999999887764
No 199
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=46.69 E-value=77 Score=25.29 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=43.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+++.++.+-+.. .+..+.+.++++.+. ...++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 23 ~~~~~vav~d~~------~~~~~~~~~~~g~~~------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 88 (332)
T 2glx_A 23 TGGEVVSMMSTS------AERGAAYATENGIGK------SVTSVEELVGDPDVDAVYVSTT--NELHREQTLAAIRAGKH 88 (332)
T ss_dssp TTCEEEEEECSC------HHHHHHHHHHTTCSC------CBSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCC------HHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEEeCC--hhHhHHHHHHHHHCCCe
Confidence 456666444332 345566667766431 1257778886 4999998776 33334456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 89 v~~ek 93 (332)
T 2glx_A 89 VLCEK 93 (332)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99853
No 200
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=46.66 E-value=54 Score=20.82 Aligned_cols=106 Identities=7% Similarity=0.066 Sum_probs=57.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~P 198 (284)
++.++.+.. .....+.......|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (116)
T 3a10_A 3 RILVVDDEP----NIRELLKEELQEEGY--EIDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGEIRKKKKDAK 75 (116)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHccCCCCe
Confidence 345555432 245556666665543 3443333333333333 35777764331 2223445555543 4577
Q ss_pred EEEc-CCCC-cceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 199 VLGT-AAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 199 vi~~-~~~~-~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|.. .... .......|..+++..|.+ .+++..++..++
T Consensus 76 ii~~s~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IILLTAYSHYRSDMSSWAADEYVVKSFN--FDELKEKVKKLL 115 (116)
T ss_dssp EEEEESCGGGGGCGGGGGSSEEEECCSS--THHHHHHHHHHT
T ss_pred EEEEECCcchHHHHHhccccceEECCCC--HHHHHHHHHHHh
Confidence 7743 2221 134445577789998887 899998887764
No 201
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=46.65 E-value=58 Score=21.25 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.3
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHh
Q 023290 125 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 194 (284)
Q Consensus 125 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama 194 (284)
++++|.|.. .+-..+.+++.+++.|++-.|.-.+. .++......+|++++.+. -.+...-++..+
T Consensus 7 ll~Cg~G~s-TS~l~~k~~~~~~~~gi~~~i~a~~~-~~~~~~~~~~Dvil~~pq---v~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMS-TSLLVSKMRAQAEKYEVPVIIEAFPE-TLAGEKGQNADVVLLGPQ---IAYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTT-THHHHHHHHHHHHHSCCSEEEEEECS-SSTTHHHHHCSEEEECTT---SGGGHHHHHHHS
T ss_pred EEECCCchh-HHHHHHHHHHHHHHCCCCeEEEEecH-HHHHhhccCCCEEEEccc---hhhhHHHHHHHh
Confidence 456666543 23466788999999998644443333 567777899999997764 233344445544
No 202
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=46.33 E-value=61 Score=21.41 Aligned_cols=108 Identities=10% Similarity=0.199 Sum_probs=60.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh-------hccEEEEcCCCCcCccchhHHHHHh--
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-------AIDVLVQNSQAWGECFGRITIEAMA-- 194 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~ad~~~~ps~~~~e~~~~~~~Eama-- 194 (284)
++.++.+.. .....++......+.. .|.......+....+. ..|++++-..- .+.-|..+++.+.
T Consensus 4 ~ILivdD~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~m-p~~~G~~~~~~lr~~ 77 (133)
T 2r25_B 4 KILVVEDNH----VNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQM-PKVDGLLSTKMIRRD 77 (133)
T ss_dssp CEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred eEEEEcCCH----HHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCChHHHHHHHHhh
Confidence 345555432 2455666666655432 2433333233333332 35888864331 2223455555553
Q ss_pred --cCCCEEEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 --FQLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 --~G~Pvi~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
...|||.. ..... .+..+.|..+++..|.+ .+++.++|..++.
T Consensus 78 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 126 (133)
T 2r25_B 78 LGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK--RPKLKTILTEFCA 126 (133)
T ss_dssp SCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHCT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 25677743 33322 23445678899999988 9999999988765
No 203
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=46.26 E-value=90 Score=23.29 Aligned_cols=108 Identities=7% Similarity=0.032 Sum_probs=65.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 198 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~P 198 (284)
.++.++.+.+ .....+.......+. .|.......+....+. ..|++++-..- .+.-|..+++.+. .++|
T Consensus 6 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~~lr~~~~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDA----SLAEMLTIVLRGEGF--DTAVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCRVLRADSGVP 78 (238)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCc
Confidence 4666776543 255666666666554 3444444345444443 46888764431 2223455565553 2688
Q ss_pred EEEcC-CC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 199 VLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 199 vi~~~-~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|... .. .....++.|..+++..|.+ ++++..+|..++.
T Consensus 79 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 79 IVMLTAKTDTVDVVLGLESGADDYIMKPFK--PKELVARVRARLR 121 (238)
T ss_dssp EEEEEETTCCSCHHHHHHTTCCEEEEESCC--HHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 88542 22 2234455688899999988 9999999998765
No 204
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=45.67 E-value=58 Score=20.91 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=58.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCCE
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 199 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~Pv 199 (284)
++.++.+.. .....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 4 HIVIVEDEP----VTQARLQSYFTQEGY--TVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHTTCCCEE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHHHHhcCCCCE
Confidence 455555432 245556666665543 3443333333434443 36887764331 2223455665553 35677
Q ss_pred EEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 200 LGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 200 i~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
|.. ..... .+.++.|..+++..|.+ .+++...|..++
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~ 117 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLE--LRELVVRVKNLL 117 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCC--HHHHHHHHHHHH
Confidence 643 32221 23345678899999887 899998887765
No 205
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=45.26 E-value=26 Score=29.04 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=49.2
Q ss_pred CeEEEEEec-CCCCChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 122 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 122 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
+.-=+++|. +........+.+++++++.|....+..+|.. +.+.. + ..|++|..+- . .+++.+.-.+-+|
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLan-F-~iD~fV~vaC--P---rlsidd~~~F~KP 337 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEG-F-PFEAYVVVAC--P---RVPLDDYGAWRKP 337 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTT-S-CCSEEEECSC--T---HHHHSCCSCCSSC
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhC-C-CCCEEEEecC--C---CccccchhhCCCc
Confidence 333356665 4445556788899999999988778888875 33333 3 4999997765 1 2455556667777
Q ss_pred EEEc
Q 023290 199 VLGT 202 (284)
Q Consensus 199 vi~~ 202 (284)
||++
T Consensus 338 vLTP 341 (378)
T 3lzd_A 338 VLTP 341 (378)
T ss_dssp EECH
T ss_pred ccCH
Confidence 7776
No 206
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=45.16 E-value=35 Score=23.01 Aligned_cols=109 Identities=7% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEE-EeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH-hcC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM-AFQ 196 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam-a~G 196 (284)
...++.++=+.+. ....+....++.|.. |. ....-++..+++. ..|++++--.- .+.-|..+.+.+ ..+
T Consensus 7 r~~rILiVdD~~~----~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~~~~~DlvllDi~m-P~~~G~el~~~lr~~~ 79 (123)
T 2lpm_A 7 RRLRVLVVEDESM----IAMLIEDTLCELGHE--VAATASRMQEALDIARKGQFDIAIIDVNL-DGEPSYPVADILAERN 79 (123)
T ss_dssp CCCCEEEESSSTT----TSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHHHCCSSEEEECSSS-SSCCSHHHHHHHHHTC
T ss_pred CCCEEEEEeCCHH----HHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHcCC
Confidence 3455666655432 445666666666542 21 1111123333332 45777753321 222345555554 357
Q ss_pred CCEEEc-CCCCcceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 197 LPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 197 ~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|||.. ..+......+-+..+++..|-+ ++++..+|.++.
T Consensus 80 ipvI~lTa~~~~~~~~~~g~~~yl~KP~~--~~~L~~~l~~~~ 120 (123)
T 2lpm_A 80 VPFIFATGYGSKGLDTRYSNIPLLTKPFL--DSELEAVLVQIS 120 (123)
T ss_dssp CSSCCBCTTCTTSCCSSSCSCSCBCSSSS--HHHHHHHHSTTC
T ss_pred CCEEEEecCccHHHHHhCCCCcEEECCCC--HHHHHHHHHHHH
Confidence 898843 3332222334466789999988 999998887654
No 207
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=44.73 E-value=32 Score=22.25 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
.|...+.++++. ...+++|+...-+. .....+..++...+++ +.+.+...++......
T Consensus 21 ~G~~~v~kai~~------------gka~lViiA~D~~~--~~~~~i~~~c~~~~ip--~~~~~s~~eLG~a~Gk 78 (101)
T 3on1_A 21 TGEEQVVKAVQN------------GQVTLVILSSDAGI--HTKKKLLDKCGSYQIP--VKVVGNRQMLGRAIGK 78 (101)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEEETTSCH--HHHHHHHHHHHHHTCC--EEEESCHHHHHHHTTS
T ss_pred ECHHHHHHHHHc------------CCCcEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCC
Confidence 356677666654 66778877764432 3567788888888775 4455555667666544
No 208
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=44.63 E-value=60 Score=20.84 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----cC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 196 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~G 196 (284)
++.++.+.. .....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (124)
T 1mb3_A 3 KVLIVEDNE----LNMKLFHDLLEAQGY--ETLQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKWLKEDDDLAH 75 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHHHHHSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHcCccccC
Confidence 345555432 245556666665544 2333322223333332 46887764331 2223555666654 35
Q ss_pred CCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|+|...... .....+.|..+++..|.+ .+++..+|..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 76 IPVVAVTAFAMKGDEERIREGGCEAYISKPIS--VVHFLETIKRLLE 120 (124)
T ss_dssp SCEEEEC------CHHHHHHHTCSEEECSSCC--HHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 7887543222 223345677889999888 9999999988764
No 209
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=43.94 E-value=28 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=33.4
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCCcceeee---c--CCceeeecCC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV---N--GTTGLLHPVG 223 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~~~e~v~---~--~~~g~~~~~~ 223 (284)
.++.++. .+|++|-.+. .+.. ...++ +..|+|+|+...|-..+... + ...++++.++
T Consensus 47 ~dl~~l~-~~DVvIDft~--p~a~-~~~~~-l~~g~~vVigTTG~s~e~~~~l~~aa~~~~v~~a~N 108 (243)
T 3qy9_A 47 QHIADVK-GADVAIDFSN--PNLL-FPLLD-EDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSAN 108 (243)
T ss_dssp SCTTTCT-TCSEEEECSC--HHHH-HHHHT-SCCCCCEEECCCSSHHHHHHHHHHHTTTSEEEECSS
T ss_pred CCHHHHh-CCCEEEEeCC--hHHH-HHHHH-HhcCCceEeCCCCCCHHHHHHHHHHHhcCCEEEECC
Confidence 4455556 8999996665 3322 23345 88999999887664332221 1 2356666554
No 210
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=43.92 E-value=87 Score=22.46 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=44.1
Q ss_pred cc-EEEEcCCCCcCccchhHHHHH-hcCCCEEEcCCC--Ccce------eeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 171 ID-VLVQNSQAWGECFGRITIEAM-AFQLPVLGTAAG--GTTE------IVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 171 ad-~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~~--~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+| ++|.|.- +...+.++..|+ +.++|+|=.-.. -.+| ++.+...|.++--+ ++...-+|..+++
T Consensus 84 ~dgIIINpgA--yTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G---~~gY~lAl~~l~~ 157 (167)
T 3kip_A 84 VGFVVINAGA--YTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLG---VYGYTAAIEYALN 157 (167)
T ss_dssp CCEEEEECGG--GGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESST---THHHHHHHHHHTT
T ss_pred ccEEEEcccc--ceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCC---hhhHHHHHHHHHH
Confidence 44 4566765 666788999987 568999944222 2233 55556678888776 7888888888765
No 211
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=43.56 E-value=27 Score=25.83 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=27.9
Q ss_pred CHHHHHhhccEEEEcCCCCcCccch--hHHHHHh------cCCCEEEcCCCC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGR--ITIEAMA------FQLPVLGTAAGG 206 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~--~~~Eama------~G~Pvi~~~~~~ 206 (284)
.-.-+...||.+|.- ..|+|+ =++|++. .++||+.-+..+
T Consensus 90 Rk~~~~~~sda~Ivl----PGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g 137 (191)
T 1t35_A 90 RKAKMSELADGFISM----PGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNG 137 (191)
T ss_dssp HHHHHHHHCSEEEEC----SCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGG
T ss_pred HHHHHHHHCCEEEEe----CCCccHHHHHHHHHHHHHhCCCCCCEEEecCCc
Confidence 344567889998864 344564 3778885 789999987643
No 212
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=43.49 E-value=38 Score=26.00 Aligned_cols=76 Identities=14% Similarity=0.058 Sum_probs=41.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCH---H--------------HHHhhcc-EEEEcCCCCc
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV---A--------------PYLAAID-VLVQNSQAWG 182 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~---~--------------~~~~~ad-~~~~ps~~~~ 182 (284)
.+..|.+.|... .......++++++++.|- .|.--|+. ++ . .-..... .++....
T Consensus 4 ~g~~F~ls~~~~-~~~~~k~~L~~~I~~~GG--~v~~~g~~-~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~--- 76 (241)
T 2vxb_A 4 DDCVFAFSGPVH-EDAYDRSALETVVQDHGG--LVLDTGLR-PLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDT--- 76 (241)
T ss_dssp TTEEEEECCCSS-TTSSCHHHHHHHHHHTTC--EECTTCSG-GGBCCSCC----CCCSCCBCGGGGGCSEEEEECSS---
T ss_pred CCcEEEEecCCC-CchhhHHHHHHHHHHCCC--EEecCcch-hhccCccccccccccccccccccccccceEEEcCC---
Confidence 567788887621 111257889999998862 22111110 01 0 0011112 3333332
Q ss_pred CccchhHHHHHhcCCCEEEcC
Q 023290 183 ECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 183 e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..-..+.+.|++.|.|||.++
T Consensus 77 ~~rt~K~~~ala~gipiV~~~ 97 (241)
T 2vxb_A 77 FSRKVKYLEALAFNIPCVHPQ 97 (241)
T ss_dssp CCCCHHHHHHHHHTCCEECTH
T ss_pred CCCcHHHHHHHHcCCCEecHH
Confidence 223568999999999999984
No 213
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=42.93 E-value=71 Score=21.18 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=59.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh-----c
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 195 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-----~ 195 (284)
.++.++.+.. .....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (138)
T 3c3m_A 4 YTILVVDDSP----MIVDVFVTMLERGGY--RPITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLERIKTDPATR 76 (138)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHcCcccC
Confidence 3556665532 245566666666554 3433332233333443 35888764431 2233566676664 3
Q ss_pred CCCEEEc-CCCCcce-ee--ecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 196 QLPVLGT-AAGGTTE-IV--VNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 196 G~Pvi~~-~~~~~~e-~v--~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
.+|+|.. ....... .. ..+..+++..|.+ .+++..+|..++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~--~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 77 DIPVLMLTAKPLTPEEANEYGSYIEDYILKPTT--HHQLYEAIEHVLAR 123 (138)
T ss_dssp TSCEEEEESSCCCHHHHHHTTTTCSEEEECCCH--HHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHhhcCHhheEeCCCC--HHHHHHHHHHHHHH
Confidence 5788753 3222111 11 1234588888887 89999999988764
No 214
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=42.91 E-value=69 Score=21.05 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=59.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~ 197 (284)
.+++++.+.. .....+.......+....+.......+....+. ..|++++-..- .+.-|..+++.+. ...
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~l-p~~~g~~~~~~l~~~~~~~ 78 (133)
T 3b2n_A 4 TSLIIAEDQN----MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM-PGMTGLEVLAEIRKKHLNI 78 (133)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEECCCH----HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHHHCCCC
Confidence 3455555432 244555555555431111222222223333332 46888865431 2223455565553 357
Q ss_pred CEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 198 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 198 Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
|+|.. .... ..+.++.|..+++..|.+ ++++..+|..++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERS--IEELVETINKVNNG 123 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHcC
Confidence 77754 3222 233445678899999988 99999999887653
No 215
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=42.20 E-value=87 Score=21.98 Aligned_cols=38 Identities=3% Similarity=-0.095 Sum_probs=19.5
Q ss_pred HhhccEEEEcCCCCcCccc-hhHHHHH----hcCCCEEEcCCC
Q 023290 168 LAAIDVLVQNSQAWGECFG-RITIEAM----AFQLPVLGTAAG 205 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~-~~~~Eam----a~G~Pvi~~~~~ 205 (284)
+..+|.+++.+.-|....| ..+++.+ ..|+++.+..+.
T Consensus 49 ~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~ 91 (161)
T 3hly_A 49 VSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSY 91 (161)
T ss_dssp HHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCC
T ss_pred HHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcC
Confidence 4577877665443333333 1344433 357777765443
No 216
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=42.14 E-value=39 Score=26.80 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=53.7
Q ss_pred CcEEEeccc--c---CHHHHHhhccEEEEcCCCCcCccch-hHHHHHhcCCCEEEcCCCCcceeeecCCceeeecCCCCC
Q 023290 153 DRVHFVNKT--L---TVAPYLAAIDVLVQNSQAWGECFGR-ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEG 226 (284)
Q Consensus 153 ~~v~~~~~~--~---~~~~~~~~ad~~~~ps~~~~e~~~~-~~~Eama~G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~ 226 (284)
.+|.|.|.. . .....+..||++|.-..+ ..-+|. .+..+...|.|+|.-+......+-......-++-.++
T Consensus 175 P~IV~FGE~lp~~~~~~~~~~~~aDlllviGTS-l~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~-- 251 (285)
T 3glr_A 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILGTS-LEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGD-- 251 (285)
T ss_dssp EEECCTTSBCCGGGGGHHHHHHHCSEEEEESCC-CCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESC--
T ss_pred CcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCC-CccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCC--
Confidence 457776652 1 223556889998754331 232332 2345556678888765544332210111222333444
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023290 227 ITPLAKNIVKLATHVERRLTMGKRGYER 254 (284)
Q Consensus 227 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 254 (284)
.++....|.+.+.=.++.+.+.++..+.
T Consensus 252 ~~~~~~~L~~~lgw~~el~~~~~~~~~~ 279 (285)
T 3glr_A 252 VVHGVESLVELLGWTEEMRDLVQRETGK 279 (285)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhhHhh
Confidence 7788888888777555666666655543
No 217
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=42.10 E-value=96 Score=26.57 Aligned_cols=71 Identities=7% Similarity=-0.020 Sum_probs=46.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcC--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ-- 196 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G-- 196 (284)
+++.++-+-+. ..+..+..+++++++. +.. ..++.+++. ..|+++..+. ...-.-.+.+|+..|
T Consensus 67 ~~~~lvav~d~------~~~~a~~~a~~~g~~~-~~~---~~d~~ell~~~~vD~V~I~tp--~~~H~~~~~~al~aG~~ 134 (479)
T 2nvw_A 67 SQFQIVALYNP------TLKSSLQTIEQLQLKH-ATG---FDSLESFAQYKDIDMIVVSVK--VPEHYEVVKNILEHSSQ 134 (479)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHTTCTT-CEE---ESCHHHHHHCTTCSEEEECSC--HHHHHHHHHHHHHHSSS
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-cee---eCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 57777755543 2356667777777642 222 247778886 6899988775 332234567899999
Q ss_pred ----CCEEEcC
Q 023290 197 ----LPVLGTA 203 (284)
Q Consensus 197 ----~Pvi~~~ 203 (284)
++|++-.
T Consensus 135 ~~~~khVl~EK 145 (479)
T 2nvw_A 135 NLNLRYLYVEW 145 (479)
T ss_dssp CSSCCEEEEES
T ss_pred cCCceeEEEeC
Confidence 9999854
No 218
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=42.04 E-value=23 Score=27.86 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCCC
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 206 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~~ 206 (284)
++.+++..+|+++-.+. .+..--.+..|+..|+|+|+...+.
T Consensus 65 dl~~~l~~~DvVIDft~--p~~~~~~~~~a~~~G~~vVigTtG~ 106 (273)
T 1dih_A 65 SLDAVKDDFDVFIDFTR--PEGTLNHLAFCRQHGKGMVIGTTGF 106 (273)
T ss_dssp CSTTTTTSCSEEEECSC--HHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred CHHHHhcCCCEEEEcCC--hHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45566678999995555 4444445668899999999865543
No 219
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=41.94 E-value=1.1e+02 Score=23.36 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=30.3
Q ss_pred ccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 171 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 171 ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
-|++++.... .| ..++.||.-.|+|+|+- |+...++.+ .+.++.+|+
T Consensus 158 Pdll~v~Dp~-~e--~~ai~EA~~l~IPvIaivDTn~dp~~V-----dy~IP~Ndd 205 (231)
T 3bbn_B 158 PDIVIIVDQQ-EE--YTALRECITLGIPTICLIDTNCNPDLA-----DISIPANDD 205 (231)
T ss_dssp CSEEEESCTT-TT--HHHHHHHHTTTCCEEECCCSSSCCSSC-----SEECCCCSS
T ss_pred CCEEEEeCCc-cc--cHHHHHHHHhCCCEEEEecCCCCccce-----eEEeeCCCc
Confidence 4666554331 33 46899999999999975 555545554 356666653
No 220
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=41.93 E-value=79 Score=21.40 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHH-cCCCCcEE-EeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~-~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama-- 194 (284)
...+++++.+.. .....+...... .+. .+. ......+....+. ..|++++-... .+.-|..+++.+.
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHP----IVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTL-PGPGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred cccEEEEECCcH----HHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHh
Confidence 456777777643 244555555544 222 222 2222234444443 36888865431 2223445555443
Q ss_pred -cCCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 -~G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|+|... ... ....++.|..+++..+.+ .+++..+|..++.
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 77 DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSD--PAELVQAIEAILA 124 (153)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSC--TTHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHh
Confidence 367877543 222 223445677889999887 8999999998876
No 221
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=41.79 E-value=98 Score=22.45 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc---cCHHHHHhhcc---EEEEcCCCCc--CccchhHHHHHhcCCCEEEc
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAID---VLVQNSQAWG--ECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~---~~~~~~~~~ad---~~~~ps~~~~--e~~~~~~~Eama~G~Pvi~~ 202 (284)
+...+.+++++.|. .+..+... +++...+...+ +++.|..... .++-..+++++..|+|++..
T Consensus 12 ~~~~i~~~l~~~G~--~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGI 82 (192)
T 1i1q_B 12 FTWNLADQLRTNGH--NVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGI 82 (192)
T ss_dssp SHHHHHHHHHHTTC--EEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEE
T ss_pred HHHHHHHHHHHCCC--eEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEE
Confidence 56777778888775 34444433 33434443333 7776654211 12334577888889999974
No 222
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=41.37 E-value=1.6e+02 Score=24.66 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=52.6
Q ss_pred HhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----------------------------cCHH
Q 023290 114 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----------------------------LTVA 165 (284)
Q Consensus 114 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----------------------------~~~~ 165 (284)
+-.|..-.+.++++.|.|. .-..+.+++..+|. .+|.+.+.. .++.
T Consensus 180 ~l~g~~l~d~kVVi~GAGa-----AG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~ 253 (398)
T 2a9f_A 180 KLLKKSLDEVSIVVNGGGS-----AGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLE 253 (398)
T ss_dssp HTTTCCTTSCEEEEECCSH-----HHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCS
T ss_pred HHhCCCCCccEEEEECCCH-----HHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHH
Confidence 3334466889999999985 55666677777776 355544321 1366
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 202 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~ 202 (284)
+.+..+|++|-.|. ..-+.--+++.|+ --|||-.
T Consensus 254 eav~~ADV~IG~Sa--pgl~T~EmVk~Ma-~~pIIfa 287 (398)
T 2a9f_A 254 DALEGADIFIGVSA--PGVLKAEWISKMA-ARPVIFA 287 (398)
T ss_dssp HHHHTTCSEEECCS--TTCCCHHHHHTSC-SSCEEEE
T ss_pred HHhccCCEEEecCC--CCCCCHHHHHhhC-CCCEEEE
Confidence 77888999998875 4555556777777 4566543
No 223
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=41.25 E-value=82 Score=21.44 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHHh----
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA---- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eama---- 194 (284)
.+.++.++=+.. .....++...+..|.. .|.....-.+..+.+ ...|++++--.- .+--|..+++.+-
T Consensus 11 k~~rILiVDD~~----~~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~M-P~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 11 KNMKILIVDDFS----TMRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWNM-PGMQGIDLLKNIRADEE 84 (134)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhCCC
Confidence 456667765432 3566677777777653 233322212233333 246888753320 2223566666653
Q ss_pred -cCCCEEEcCC-CCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 -FQLPVLGTAA-GGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 -~G~Pvi~~~~-~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|||.-.. +.. .+..+.|.++++..|-+ ++++.+.|.++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT--AATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHCC
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 4688885433 322 22345688899999998 9999999988764
No 224
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=40.99 E-value=41 Score=27.83 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=52.6
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 162 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~ 162 (284)
.++.++.+|.- . | ..-++++.++ .+.+.++-+.+.. .+..++.++++|++ .. .
T Consensus 6 ~~~rv~VvG~G-~--g-~~h~~a~~~~----------~~~~elvav~~~~------~~~a~~~a~~~gv~----~~---~ 58 (372)
T 4gmf_A 6 PKQRVLIVGAK-F--G-EMYLNAFMQP----------PEGLELVGLLAQG------SARSRELAHAFGIP----LY---T 58 (372)
T ss_dssp -CEEEEEECST-T--T-HHHHHTTSSC----------CTTEEEEEEECCS------SHHHHHHHHHTTCC----EE---S
T ss_pred CCCEEEEEehH-H--H-HHHHHHHHhC----------CCCeEEEEEECCC------HHHHHHHHHHhCCC----EE---C
Confidence 46677788852 2 3 2334444332 1357777444432 25667788888763 22 3
Q ss_pred CHHHHHhhccEEEEcCCCC-cCcc-chhHHHHHhcCCCEEEcC
Q 023290 163 TVAPYLAAIDVLVQNSQAW-GECF-GRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~-~e~~-~~~~~Eama~G~Pvi~~~ 203 (284)
++.+++...|+++..+... ..+. --....|+..|++|++-.
T Consensus 59 ~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EK 101 (372)
T 4gmf_A 59 SPEQITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEH 101 (372)
T ss_dssp SGGGCCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEec
Confidence 4445567789877654310 1111 124678899999999865
No 225
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=40.26 E-value=77 Score=20.79 Aligned_cols=108 Identities=7% Similarity=0.013 Sum_probs=60.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH---hcCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam---a~G~ 197 (284)
.++.++.+.. .....++......|. .|.......+....+. ..|++++-..- .+.-|..+++.+ ..++
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (132)
T 3crn_A 4 KRILIVDDDT----AILDSTKQILEFEGY--EVEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLEKAHKLRPGM 76 (132)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHHHHHHHCTTS
T ss_pred cEEEEEeCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCC
Confidence 3556666542 245566666666553 3443333233333333 36888764331 222345555554 2467
Q ss_pred CEEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 198 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 198 Pvi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
|+|.. .... ..+.++.|..+++..|.+ .+++..+|..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVN--PRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCC--HHHHHHHHHHHHh
Confidence 77753 3322 223445678899999988 9999999988764
No 226
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=40.02 E-value=1.6e+02 Score=24.47 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=47.2
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc-----------------------------cCHHHHHh
Q 023290 119 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----------------------------LTVAPYLA 169 (284)
Q Consensus 119 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-----------------------------~~~~~~~~ 169 (284)
+-.+.+++++|.|. .-..+.+++...|. .+|.+.+.. .++.+.+.
T Consensus 189 ~l~~~kVVv~GAGa-----AG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~ 262 (388)
T 1vl6_A 189 KIEEVKVVVNGIGA-----AGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALE 262 (388)
T ss_dssp CTTTCEEEEECCSH-----HHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHT
T ss_pred CCCCcEEEEECCCH-----HHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHc
Confidence 44788999999885 45556666666665 355554321 24788899
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.+|++|..|. ..-+.--+++.|+ ..|+|
T Consensus 263 ~ADVlIG~Sa--p~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 263 GADFFIGVSR--GNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp TCSEEEECSC--SSCSCHHHHTTSC-SSCEE
T ss_pred cCCEEEEeCC--CCccCHHHHHhcC-CCCEE
Confidence 9999998775 3334444666665 34555
No 227
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=39.98 E-value=1.2e+02 Score=23.01 Aligned_cols=109 Identities=13% Similarity=0.188 Sum_probs=65.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH---hcC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQ 196 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam---a~G 196 (284)
..++.++.+.. .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+ ...
T Consensus 129 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~dlvl~D~~m-p~~~G~~l~~~ir~~~~~ 201 (254)
T 2ayx_A 129 DMMILVVDDHP----INRRLLADQLGSLGY--QCKTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLTQRIRQLGLT 201 (254)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHHTS--EEEEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhcCCC
Confidence 46677777643 255667777777765 4554444444444443 46888753220 122244455443 347
Q ss_pred CCEEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 197 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 197 ~Pvi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|||...... ....++.|.++++..|.+ .+++...|..++.
T Consensus 202 ~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 202 LPVIGVTANALAEEKQRCLESGMDSCLSKPVT--LDVIKQTLTLYAE 246 (254)
T ss_dssp SCEEEEESSTTSHHHHHHHHCCCEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHcCCceEEECCCC--HHHHHHHHHHHHH
Confidence 8988543222 223445677889999988 9999999988764
No 228
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=39.82 E-value=1e+02 Score=22.13 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=31.0
Q ss_pred CCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 023290 83 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 131 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~ 131 (284)
...+++.+|.-+.....+.+.+.+..+.+.+++.+ ++.++++++..
T Consensus 75 pd~Vvi~~G~ND~~~~~~~~~~~l~~ii~~l~~~~---p~~~ii~~~~~ 120 (200)
T 4h08_A 75 FDVIHFNNGLHGFDYTEEEYDKSFPKLIKIIRKYA---PKAKLIWANTT 120 (200)
T ss_dssp CSEEEECCCSSCTTSCHHHHHHHHHHHHHHHHHHC---TTCEEEEECCC
T ss_pred CCeEEEEeeeCCCCCCHHHHHHHHHHHHHHHhhhC---CCccEEEeccC
Confidence 45667778876665566777666777666666543 78888877653
No 229
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=39.78 E-value=82 Score=21.01 Aligned_cols=67 Identities=6% Similarity=-0.029 Sum_probs=39.0
Q ss_pred hccEEEEcCCCCcCccchhHHHHHh---cCCCEEEcC-CC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi~~~-~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|++++-..- .+.-|..+++.+. .+.|+|... .. ...+.++.|..+++..|.+ .+++..+|..++.
T Consensus 49 ~~dlvllD~~l-p~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 49 PPNVLLTDVRM-PRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPID--PSEIMDALKQSIQ 122 (141)
T ss_dssp CCSEEEEESCC-SSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 36888764331 2223455555543 467877542 22 2334555677899999887 9999999988764
No 230
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=39.39 E-value=1.2e+02 Score=22.88 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=58.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 198 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~P 198 (284)
.+++++.+.. .....+.......+. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 38 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~DlvllD~~l-p~~~G~~l~~~lr~~~~~~ 110 (249)
T 3q9s_A 38 QRILVIEDDH----DIANVLRMDLTDAGY--VVDHADSAMNGLIKAREDHPDLILLDLGL-PDFDGGDVVQRLRKNSALP 110 (249)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEEECCS-CHHHHHHHHHHHHTTCCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHcCCCCC
Confidence 4556665532 244455555554432 2333222223333332 35777764331 2223445555443 3577
Q ss_pred EEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 199 VLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 199 vi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
||...... ..+.++.|..|++..|.+ ++++..+|..++.
T Consensus 111 iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~--~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 111 IIVLTARDTVEEKVRLLGLGADDYLIKPFH--PDELLARVKVQLR 153 (249)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHh
Confidence 77543222 223445678899999988 9999999998765
No 231
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=39.27 E-value=41 Score=25.40 Aligned_cols=64 Identities=6% Similarity=-0.034 Sum_probs=41.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEE
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 201 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~ 201 (284)
.+++++-|-.+ +..+.+.+.++.+|.. + . ++. ..|.-+|.+.. .. ..+++.|++.|+|||.
T Consensus 16 ~~~i~~SG~~~----~~~~~l~~~i~~lGg~--v--~---~~~----~~~THLI~~~~--~r--T~K~l~A~~~g~~IVs 76 (219)
T 3sqd_A 16 TPFVLFTGFEP----VQVQQYIKKLYILGGE--V--A---ESA----QKCTHLIASKV--TR--TVKFLTAISVVKHIVT 76 (219)
T ss_dssp CCEEEECSCCH----HHHHHHHHHHHHTTCE--E--C---SSG----GGCSEEECSSC--CC--CHHHHHHTTTCSEEEC
T ss_pred CeEEEEeCCCh----HHHHHHHHHHHHCCCE--E--e---CCC----CCceEEEECCC--CC--CHHHHHHHHcCCCEec
Confidence 45666666432 2456788888888731 2 1 232 67888887653 11 3589999999999998
Q ss_pred cCC
Q 023290 202 TAA 204 (284)
Q Consensus 202 ~~~ 204 (284)
+++
T Consensus 77 ~~W 79 (219)
T 3sqd_A 77 PEW 79 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 232
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=39.25 E-value=1.5e+02 Score=23.76 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 151 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 151 (284)
-.+++.+|- -+.+.|.|+|-..... +...+..+.. ..+++++.+++...... .+.+.+.+++.|.
T Consensus 140 ~Ti~e~~g~-l~glkva~vGD~~~~r----va~Sl~~~~~-------~~~G~~v~~~~P~~~~~---~~~~~~~~~~~g~ 204 (306)
T 4ekn_B 140 YTIMREIGR-IDGIKIAFVGDLKYGR----TVHSLVYALS-------LFENVEMYFVSPKELRL---PKDIIEDLKAKNI 204 (306)
T ss_dssp HHHHHHHSC-STTCEEEEESCTTTCH----HHHHHHHHHH-------TSSSCEEEEECCGGGCC---CHHHHHHHHHTTC
T ss_pred HHHHHHhCC-cCCCEEEEEcCCCCCc----HHHHHHHHHH-------hcCCCEEEEECCccccc---CHHHHHHHHHcCC
Confidence 566777773 2466788999653222 3333333332 22478999998643221 1344444555543
Q ss_pred CCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 152 QDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
.+... .++.+.+..||++....
T Consensus 205 --~~~~~---~d~~eav~~aDvvy~~~ 226 (306)
T 4ekn_B 205 --KFYEK---ESLDDLDDDIDVLYVTR 226 (306)
T ss_dssp --CEEEE---SCGGGCCTTCSEEEECC
T ss_pred --EEEEE---cCHHHHhcCCCEEEeCC
Confidence 34333 46667788999988654
No 233
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=39.19 E-value=28 Score=24.92 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=22.8
Q ss_pred HHHhhccEEEEcCCCCcCccchhHHH---HHhcCCCEEEc
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGT 202 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~~~E---ama~G~Pvi~~ 202 (284)
..+..||++|.--. +.-..+.+| |.+.|+||++-
T Consensus 73 ~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 73 NWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp HHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEE
Confidence 56899999886332 112234444 68889999985
No 234
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=38.62 E-value=86 Score=25.18 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=29.8
Q ss_pred cCHHHHHhh---ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~---ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++.. .|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 70 ~~~~~ll~~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 70 TTIEAMLDAEPSIDAVSLCMP--PQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp SSHHHHHHHCTTCCEEEECSC--HHHHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHHhCCCCCCEEEEeCC--cHHHHHHHHHHHHcCCcEEEeC
Confidence 577778776 899988776 3333345778999999999865
No 235
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=38.49 E-value=77 Score=20.29 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=58.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCCE
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 199 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~Pv 199 (284)
++.++.+.. .....+.......+. .+.......+....+. ..|++++-... .+.-|..+++.+. ...|+
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~i 77 (123)
T 1xhf_A 5 HILIVEDEL----VTRNTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARELREQANVAL 77 (123)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHHCCCEE
T ss_pred eEEEEeCCH----HHHHHHHHHHhhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHhCCCCcE
Confidence 556665532 245556666665443 3443333233333333 46888764431 2223444554442 46777
Q ss_pred EEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 200 LGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 200 i~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
|.. ..... ...++.|..+++..|.+ ++++...+..++.
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFN--PRELTIRARNLLS 119 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 754 32222 23345678899999988 8999998877653
No 236
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=38.48 E-value=40 Score=21.84 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 170 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (284)
.|...+.++++. ...+++|+...-+. .....+..++...+++ +.+.+...++......
T Consensus 22 ~G~~~v~kai~~------------gka~lViiA~D~~~--~~~~~i~~~c~~~~vp--~~~~~s~~eLG~A~Gk 79 (101)
T 3v7q_A 22 SGEDLVIKEIRN------------ARAKLVLLTEDASS--NTAKKVTDKCNYYKVP--YKKVESRAVLGRSIGK 79 (101)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEEETTSCH--HHHHHHHHHHHHTTCC--EEEESCHHHHHHHTTS
T ss_pred cchhhhHHHHhc------------CceeEEEEeccccc--cchhhhcccccccCCC--eeeechHHHHHhhhCc
Confidence 356677666654 66778887764432 3567788888887775 4444555666665543
No 237
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=38.35 E-value=76 Score=20.20 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCCEEEc-CCCC---cc
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLGT-AAGG---TT 208 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi~~-~~~~---~~ 208 (284)
....+.......|. .+.......+....+. ..|++++-... .+.-|..+++.+. ...|+|.. .... ..
T Consensus 12 ~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 88 (121)
T 2pl1_A 12 LRHHLKVQIQDAGH--QVDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRRWRSNDVSLPILVLTARESWQDKV 88 (121)
T ss_dssp HHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHH
T ss_pred HHHHHHHHHhhcCC--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHH
Confidence 44555666655543 3433333233333333 35787764331 2223455666554 35777754 3222 12
Q ss_pred eeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 209 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 209 e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+.++.|..+++..|.+ ++++...+..++.
T Consensus 89 ~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 89 EVLSAGADDYVTKPFH--IEEVMARMQALMR 117 (121)
T ss_dssp HHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred HHHHcCccceEECCCC--HHHHHHHHHHHHH
Confidence 3445677889999888 8999998877653
No 238
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=38.25 E-value=90 Score=25.67 Aligned_cols=108 Identities=6% Similarity=-0.055 Sum_probs=51.3
Q ss_pred EEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccc----c
Q 023290 87 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----L 162 (284)
Q Consensus 87 i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~----~ 162 (284)
.++.|.-....+...+++.+.+... . ....-.+++.++.........+.+.+.+.+.+. .+....-. .
T Consensus 228 ~i~pgHg~~~~~~~~~~~~~~~~~~---~---~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~--~v~~~~~~~~~~~ 299 (404)
T 2ohh_A 228 MIAPSHGQIWTDPMKIIEAYTGWAT---G---MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGV--DVRVYCLHEDDRS 299 (404)
T ss_dssp EEECSSSCBBSSHHHHHHHHHHHHT---T---CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTC--EEEEEETTTSCHH
T ss_pred EEecCCCccccCHHHHHHHHHHHhc---c---CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCC--eEEEEECCCCCHH
Confidence 3456665554555555555544331 1 112333455665432212233334444443333 34433322 2
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchhH---HHHHh-------cCCCEEEc
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRIT---IEAMA-------FQLPVLGT 202 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~~---~Eama-------~G~Pvi~~ 202 (284)
++..-+..+|.+++.+.-|..+.+-.+ ++.+. .|+|+...
T Consensus 300 ~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 300 EIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp HHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred HHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 334457899998876654455555333 34332 57787744
No 239
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=38.21 E-value=79 Score=20.32 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=59.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHH---hcCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAM---AFQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eam---a~G~P 198 (284)
++.++.+.. .....+.......+. .+.......+....+ ...|++++-..- .+.-|..+++.+ ....|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1srr_A 5 KILIVDDQS----GIRILLNEVFNKEGY--QTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMKVIDENIR 77 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHHHHCTTCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHHhCCCCC
Confidence 456665532 245556666665443 343333223333333 246888764331 222244555544 34678
Q ss_pred EEEc-CCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 199 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 199 vi~~-~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|.. .... ..+..+.|..+++..|.+ .+++..+|..++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFD--IDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCC--HHHHHHHHHHHSC
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCC--HHHHHHHHHHHhc
Confidence 7754 3322 123345577889999888 9999999988765
No 240
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=37.84 E-value=72 Score=25.67 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+.+..+.. ..+.+.+..+++++... . ..++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 23 ~~~~lvav~d~~~~~--~~~~~~~~~~~~~~~~~--~---~~~~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkh 93 (337)
T 3ip3_A 23 EECSITGIAPGVPEE--DLSKLEKAISEMNIKPK--K---YNNWWEMLEKEKPDILVINTV--FSLNGKILLEALERKIH 93 (337)
T ss_dssp TTEEEEEEECSSTTC--CCHHHHHHHHTTTCCCE--E---CSSHHHHHHHHCCSEEEECSS--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecCCchh--hHHHHHHHHHHcCCCCc--c---cCCHHHHhcCCCCCEEEEeCC--cchHHHHHHHHHHCCCc
Confidence 788888666543210 22455556666665221 1 2577888875 899888775 33223357789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 94 Vl~EK 98 (337)
T 3ip3_A 94 AFVEK 98 (337)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99754
No 241
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=36.95 E-value=31 Score=24.86 Aligned_cols=38 Identities=11% Similarity=-0.071 Sum_probs=23.5
Q ss_pred HHHhhccEEEE--cCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 166 PYLAAIDVLVQ--NSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 166 ~~~~~ad~~~~--ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+..||++|. .......|...=+-=|.+.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 45789999876 211002232233445789999999873
No 242
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=36.92 E-value=1.1e+02 Score=24.30 Aligned_cols=68 Identities=9% Similarity=0.194 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 199 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pv 199 (284)
+++.++ +-+. ..+..+.++++++.+. .+.... +.+ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 26 ~~~~l~-v~d~------~~~~~~~~a~~~g~~~--~~~~~~----~~l~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~V 90 (323)
T 1xea_A 26 PDIELV-LCTR------NPKVLGTLATRYRVSA--TCTDYR----DVLQYGVDAVMIHAA--TDVHSTLAAFFLHLGIPT 90 (323)
T ss_dssp TTEEEE-EECS------CHHHHHHHHHHTTCCC--CCSSTT----GGGGGCCSEEEECSC--GGGHHHHHHHHHHTTCCE
T ss_pred CCceEE-EEeC------CHHHHHHHHHHcCCCc--cccCHH----HHhhcCCCEEEEECC--chhHHHHHHHHHHCCCeE
Confidence 678888 4443 2355666777776531 011221 223 57899998776 333344566889999999
Q ss_pred EEcC
Q 023290 200 LGTA 203 (284)
Q Consensus 200 i~~~ 203 (284)
++-.
T Consensus 91 ~~EK 94 (323)
T 1xea_A 91 FVDK 94 (323)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9753
No 243
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.84 E-value=54 Score=21.31 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHhcccCCCeEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEe
Q 023290 24 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 90 (284)
Q Consensus 24 s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~ 90 (284)
...+...+++.+.+..|++++...+|++|--.+.- .-...|++.++..++++.
T Consensus 38 ~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~--------------~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 38 LHITGRELRSKIAETFGLQENYIKIVINKKQLQLG--------------KTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT--------------SBHHHHTCCSSEEEEEEC
T ss_pred CcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCC--------------CcHHHcCCCCCCEEEEEE
Confidence 33455667777888889988888889888533211 112457777666655443
No 244
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=36.61 E-value=1.1e+02 Score=21.74 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCcc-chhHHHHHh---cC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMA---FQ 196 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~-~~~~~Eama---~G 196 (284)
...++.++.+.. .....+.......|. .+.......+. +-...|++++-.. ..+. |. +.+.+. ..
T Consensus 11 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a--l~~~~dlvl~D~~--mp~~~g~-l~~~~~~~~~~ 79 (196)
T 1qo0_D 11 RELQVLVLNPPG----EVSDALVLQLIRIGC--SVRQCWPPPEA--FDVPVDVVFTSIF--QNRHHDE-IAALLAAGTPR 79 (196)
T ss_dssp GGCEEEEESCTT----HHHHHHHHHHHHHTC--EEEEECSCCSS--CSSCCSEEEEECC--SSTHHHH-HHHHHHHSCTT
T ss_pred cCCeEEEEcCCh----hHHHHHHHHHHHcCC--eEEEecCchhh--CCCCCCEEEEeCC--CCccchH-HHHHHhccCCC
Confidence 456777777654 245666666666554 23332221111 1135788886543 2222 33 555444 46
Q ss_pred CCEEEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 197 LPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 197 ~Pvi~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
+|+|.. ..... .+.++.|..+++..|.+ ++++...|..++....
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~--~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 80 TTLVALVEYESPAVLSQIIELECHGVITQPLD--AHRVLPVLVSARRISE 127 (196)
T ss_dssp CEEEEEECCCSHHHHHHHHHHTCSEEEESSCC--GGGHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCChHHHHHHHHcCCCeeEecCcC--HHHHHHHHHHHHHHHH
Confidence 788754 33222 23445578899999988 8999999988876443
No 245
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=36.57 E-value=1.4e+02 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=27.5
Q ss_pred CHHHHHhhccEEEEcCCCCc--C--ccchhHHHHHhcCCCEEE--cCCCCcce
Q 023290 163 TVAPYLAAIDVLVQNSQAWG--E--CFGRITIEAMAFQLPVLG--TAAGGTTE 209 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~--e--~~~~~~~Eama~G~Pvi~--~~~~~~~e 209 (284)
++.+.+..||+++.....-. . -+.-..++.|.-|.-+|- .+.||.-|
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 35577899999997532001 1 123456677777776663 35566555
No 246
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=36.48 E-value=44 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc-c---cCHHHHHh---hccEEEEcCCCCcCccchhHHHH
Q 023290 120 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T---LTVAPYLA---AIDVLVQNSQAWGECFGRITIEA 192 (284)
Q Consensus 120 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~---~~~~~~~~---~ad~~~~ps~~~~e~~~~~~~Ea 192 (284)
+|+-+++++|-|..-...........+++.++. |+.++.. + .-+..++. ..|.+|.|+.- .--.|....|.
T Consensus 137 nP~k~VVFfaiGFETTaP~tA~~i~~a~~~~l~-Nfsvl~~h~l~pPa~~all~~~~~idgfi~PGHV-stIiG~~~y~~ 214 (372)
T 2z1d_A 137 NPDKTVVHFSPGFETTTAPAAGMLNVAAQEELE-NFKIYSVHRLTPPAVEVLLKQGTVFQGLIAPGHV-STIIGVKGWEY 214 (372)
T ss_dssp CTTSEEEEEEEECHHHHHHHHHHHHHHHHHTCS-SEEEEEEEECHHHHHHHHHHTSCCCSEEEEEHHH-HHHHTTHHHHH
T ss_pred CCCCeEEEEeeChhhccHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHHHHHcCCCcCcEEEecCee-eEEeccchhHH
Confidence 378888888876521111222223345555765 5555443 2 45566665 47889998751 22245566666
Q ss_pred H--hcCCCEEEcCC
Q 023290 193 M--AFQLPVLGTAA 204 (284)
Q Consensus 193 m--a~G~Pvi~~~~ 204 (284)
+ -+|+|+|++..
T Consensus 215 l~~~y~~P~VVaGF 228 (372)
T 2z1d_A 215 LTEKYGIPQVVAGF 228 (372)
T ss_dssp HHHHHCCCEEEECS
T ss_pred HHHHcCCCEEEcCC
Confidence 5 46899998853
No 247
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=36.33 E-value=1.1e+02 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=26.7
Q ss_pred cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.+..+++..+|+++..+. ...---....++..|++||++.
T Consensus 71 ~d~~~l~~~vDvV~~aTp--~~~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 71 GTLNDLLEKVDIIVDATP--GGIGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp CBHHHHHTTCSEEEECCS--TTHHHHHHHHHHHHTCEEEECT
T ss_pred CcHHHhccCCCEEEECCC--ccccHHHHHHHHHcCCceEeec
Confidence 366677779999988764 2211123447788899999764
No 248
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.93 E-value=77 Score=23.28 Aligned_cols=39 Identities=10% Similarity=-0.045 Sum_probs=23.9
Q ss_pred CHHHHHhhccEEEEcCCCCcCccchh---HHHHH--------hcCCCEEE
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGRI---TIEAM--------AFQLPVLG 201 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~~---~~Eam--------a~G~Pvi~ 201 (284)
+...-+..||.+|+.+.-|+.+.+-. +++.+ ..|+|++.
T Consensus 71 ~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~ 120 (211)
T 1ydg_A 71 ATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSA 120 (211)
T ss_dssp CCHHHHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEE
T ss_pred HHHHHHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEE
Confidence 45567888999887555446665543 34443 35788653
No 249
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=35.90 E-value=34 Score=22.52 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=30.6
Q ss_pred EEEEecCCCCChH-HHHHHHHHHHHcCCC-CcEEEeccccCHHHHHhhccEEEEcCC
Q 023290 125 AVIIGSDMNAQTK-FESELRNYVMQKKIQ-DRVHFVNKTLTVAPYLAAIDVLVQNSQ 179 (284)
Q Consensus 125 l~i~G~~~~~~~~-~~~~l~~~~~~~~~~-~~v~~~~~~~~~~~~~~~ad~~~~ps~ 179 (284)
++++|.|- .... ....+++.+++.++. ..|...+. .++...+..+|+++.+..
T Consensus 22 lvvC~sG~-gTS~m~~~kl~~~~~~~gi~~~~i~~~~~-~~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 22 LTACGNGM-GSSMVIKMKVENALRQLGVSDIESASCSV-GEAKGLASNYDIVVASNH 76 (110)
T ss_dssp EEECCCCH-HHHHHHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHGGGCSEEEEETT
T ss_pred EEECCCcH-HHHHHHHHHHHHHHHHcCCCeEEEEEeeH-HHHhhccCCCcEEEECCc
Confidence 34555542 2222 234777888888775 23333332 356566789999987654
No 250
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=35.73 E-value=1.9e+02 Score=24.01 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=58.3
Q ss_pred EeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC---------ChHHHHHHHHHHHHcCCCCcEEEec
Q 023290 89 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 89 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
.+|-.... ..+.+++.+..+.+ -.+.++..|.-.+. ..+....+.+.+++.|++--.....
T Consensus 146 Iigpcsve-s~e~a~~~a~~~k~---------aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d 215 (385)
T 3nvt_A 146 VFGPCSVE-SYEQVAAVAESIKA---------KGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVT 215 (385)
T ss_dssp EEECSBCC-CHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred EEEeCCcC-CHHHHHHHHHHHHH---------cCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 34544433 66677766666654 44556655542111 1234567777788887642111122
Q ss_pred cccCHHHHHhhccEEEEcCCCCcCccchhHHH-HHhcCCCEEEcCC
Q 023290 160 KTLTVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLGTAA 204 (284)
Q Consensus 160 ~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~E-ama~G~Pvi~~~~ 204 (284)
...+..+...+|++=.+|. +.....+++ +...|+||+.+.-
T Consensus 216 -~~~~~~l~~~vd~lkIgs~---~~~n~~LL~~~a~~gkPVilk~G 257 (385)
T 3nvt_A 216 -PADIEVALDYVDVIQIGAR---NMQNFELLKAAGRVDKPILLKRG 257 (385)
T ss_dssp -GGGHHHHTTTCSEEEECGG---GTTCHHHHHHHHTSSSCEEEECC
T ss_pred -HHHHHHHHhhCCEEEECcc---cccCHHHHHHHHccCCcEEEecC
Confidence 1445555556899999986 333445554 5568999998753
No 251
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=35.63 E-value=1.2e+02 Score=21.78 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 197 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~ 197 (284)
.++.++.+.+ .....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .++
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 5 PTVFVVDDDM----SVREGLRNLLRSAGF--EVETFDCASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQEQLTAISDGI 77 (208)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEcCCHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 4566666543 245566666665543 3433332233333332 35787764331 2333555665553 468
Q ss_pred CEEEc-CCC---CcceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 198 PVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 198 Pvi~~-~~~---~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
|+|.. ... .....++.|..+++..|.+ ++++..+|..++..
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFE--EQALLDAIEQGLQL 122 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHHhh
Confidence 88754 222 2233445677889999888 99999999988764
No 252
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=35.60 E-value=1.4e+02 Score=24.40 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhh-ccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~-ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~ 203 (284)
....|.+.+++.|+. +.-..+. +.+.-+-.. +|++=.+|. +-.-..++++++ .|+|||.+.
T Consensus 79 ~~~~L~~~~~~~Gi~--~~st~fD~~svd~l~~~~v~~~KI~S~---~~~N~pLL~~va~~gKPviLst 142 (350)
T 3g8r_A 79 QMQKLVAEMKANGFK--AICTPFDEESVDLIEAHGIEIIKIASC---SFTDWPLLERIARSDKPVVAST 142 (350)
T ss_dssp HHHHHHHHHHHTTCE--EEEEECSHHHHHHHHHTTCCEEEECSS---STTCHHHHHHHHTSCSCEEEEC
T ss_pred HHHHHHHHHHHcCCc--EEeccCCHHHHHHHHHcCCCEEEECcc---cccCHHHHHHHHhhCCcEEEEC
Confidence 346677778887652 2222232 233333333 788888885 445566776665 799999874
No 253
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=35.48 E-value=1.8e+02 Score=23.75 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCC---------ChHHHHHHHHHHHHcCCCCcEEEeccccCHHH
Q 023290 96 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNKTLTVAP 166 (284)
Q Consensus 96 ~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~ 166 (284)
....+.+++.+..+.+ -...++-.+...++ ..+....+++.+++.|++--...+.. ..+..
T Consensus 116 ~es~e~a~~~a~~~k~---------aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~~d~-~~~~~ 185 (350)
T 1vr6_A 116 VEGREMLMETAHFLSE---------LGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGE-DDLPK 185 (350)
T ss_dssp CCCHHHHHHHHHHHHH---------TTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSG-GGHHH
T ss_pred cCCHHHHHHHHHHHHH---------cCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEeCCH-HHHHH
Confidence 5567777777766654 33344443321111 13456778888888887422222222 34444
Q ss_pred HHhhccEEEEcCCCCcCccchhHHHH-HhcCCCEEEcCCC
Q 023290 167 YLAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLGTAAG 205 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~~~~~Ea-ma~G~Pvi~~~~~ 205 (284)
+-..+|++=.+|+ +.....++++ ...|+||+.+.-.
T Consensus 186 l~~~vd~lkIgAr---~~~n~~LL~~va~~~kPVilk~G~ 222 (350)
T 1vr6_A 186 VAEYADIIQIGAR---NAQNFRLLSKAGSYNKPVLLKRGF 222 (350)
T ss_dssp HHHHCSEEEECGG---GTTCHHHHHHHHTTCSCEEEECCT
T ss_pred HHHhCCEEEECcc---cccCHHHHHHHHccCCcEEEcCCC
Confidence 4455899999996 4444455544 4579999987533
No 254
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=34.77 E-value=1.7e+02 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=18.9
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQ 196 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G 196 (284)
..||++|+|... ..+...+++|.+..+
T Consensus 211 G~adVlV~Pd~~-aGNi~~K~~~~~~~~ 237 (279)
T 1yco_A 211 GDADILVVPTID-VGNCLYKSLTLFGHA 237 (279)
T ss_dssp SCCSEEECSSHH-HHHHHHHHHHHHSCC
T ss_pred CCCCEEEECCch-HHHHHHHHHHHhCCC
Confidence 579999998752 334456777877644
No 255
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=34.41 E-value=1.7e+02 Score=23.10 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=22.6
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.++.++.. .+|+.+.... .+...-.+.|+...|++
T Consensus 60 ~sl~el~~~~~~Dv~ii~vp--~~~~~~~v~ea~~~Gi~ 96 (294)
T 2yv1_A 60 DTVKEAVKETDANASVIFVP--APFAKDAVFEAIDAGIE 96 (294)
T ss_dssp SSHHHHHHHHCCCEEEECCC--HHHHHHHHHHHHHTTCS
T ss_pred CCHHHHhhcCCCCEEEEccC--HHHHHHHHHHHHHCCCC
Confidence 45556655 6787776655 44455566677777777
No 256
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=34.36 E-value=1.9e+02 Score=23.62 Aligned_cols=106 Identities=10% Similarity=0.009 Sum_probs=52.1
Q ss_pred EEeccccccc---cHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCCh-HHHHHHHHHHHHcCCCCcEEEeccc-c
Q 023290 88 AIINSVSRGK---GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKT-L 162 (284)
Q Consensus 88 ~~~g~~~~~k---~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~~~~-~ 162 (284)
++.|.-.... ++..+++.+..+.. ....-++.++.....+.. ...+.+.+.+.+.+. .+....-. .
T Consensus 222 i~p~Hg~~~~~~~~~~~~~~~~~~~~~-------~~~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~--~v~~~~~~~~ 292 (402)
T 1e5d_A 222 ICPDHGVIFRGADQCTFAVQKYVEYAE-------QKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGC--TVKLMWCKAC 292 (402)
T ss_dssp EEESSSCBEESHHHHHHHHHHHHHHHH-------CCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTC--EEEEEETTTS
T ss_pred EecCCcceeecCCCHHHHHHHHHHHhc-------CCCCCcEEEEEECCChhHHHHHHHHHHHHHhCCC--eEEEEECCCC
Confidence 3455544433 46666666555543 112345565554333321 123334444444343 34333321 2
Q ss_pred C---HHHHHhhccEEEEcCCCCcCccchhHH---HHHh----cCCCEEEc
Q 023290 163 T---VAPYLAAIDVLVQNSQAWGECFGRITI---EAMA----FQLPVLGT 202 (284)
Q Consensus 163 ~---~~~~~~~ad~~~~ps~~~~e~~~~~~~---Eama----~G~Pvi~~ 202 (284)
+ +..-+..+|++++.+..|.++.+-.+. +.+. .|++++..
T Consensus 293 ~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f 342 (402)
T 1e5d_A 293 HHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAF 342 (402)
T ss_dssp CHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEE
T ss_pred CHHHHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhhcccCCCEEEEE
Confidence 3 334468999998766544666554333 4332 36777644
No 257
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=34.15 E-value=82 Score=19.36 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHH
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 167 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (284)
.|....++++++ ...+++++..+-+. .....+..+++..+++ +.+.+...++...
T Consensus 14 ~G~~~v~kai~~------------gkaklViiA~D~~~--~~~~~i~~lc~~~~Ip--~~~v~sk~eLG~a 68 (82)
T 3v7e_A 14 IGTKQTVKALKR------------GSVKEVVVAKDADP--ILTSSVVSLAEDQGIS--VSMVESMKKLGKA 68 (82)
T ss_dssp ESHHHHHHHHTT------------TCEEEEEEETTSCH--HHHHHHHHHHHHHTCC--EEEESCHHHHHHH
T ss_pred EcHHHHHHHHHc------------CCeeEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEECCHHHHHHH
Confidence 456666666643 78899988875433 4788888899988875 4444443455443
No 258
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=33.90 E-value=1.4e+02 Score=21.91 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=61.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh--cCCC
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 198 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--~G~P 198 (284)
.++.++.+.+ .....+.......+. .|.......+....+. ..|++++-... .+.-|..+++.+. ..+|
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEE----SLADPLAFLLRKEGF--EATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCKQLRARSSVP 77 (230)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHHCSCS
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHHHHHcCCCCC
Confidence 3556665532 245566666666544 3433332233333332 46887764331 2223445554443 4788
Q ss_pred EEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 199 VLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 199 vi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
+|.-.... ....++.|..+++..|.+ ++++..+|..++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYS--ARELIARIRAVLRR 121 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCC--HHHHHHHHHHHHTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHhh
Confidence 87543222 223345677889988887 99999999988753
No 259
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=33.30 E-value=1.5e+02 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=30.2
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
.-|++++.... .| ..++.||.-.|+|+|+- |+...++.+ .+.++.+|+
T Consensus 158 ~Pdll~V~Dp~-~e--~~Ai~EA~~l~IPvIaivDTn~dp~~V-----dypIP~NDd 206 (256)
T 2vqe_B 158 LPDAIFVVDPT-KE--AIAVREARKLFIPVIALADTDSDPDLV-----DYIIPGNDD 206 (256)
T ss_dssp CCSEEEESCTT-TT--HHHHHHHHHTTCCCEECCCTTSCGGGC-----SEECCSCSS
T ss_pred CCCEEEEeCCc-cc--hHHHHHHHHcCCCEEEEecCCCCchhc-----ceEeecCCc
Confidence 34555544321 23 46899999999999975 555555554 356666653
No 260
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.02 E-value=97 Score=20.35 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCcEEEeccc---cCH-HHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCC
Q 023290 139 ESELRNYVMQKKIQDRVHFVNKT---LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 204 (284)
Q Consensus 139 ~~~l~~~~~~~~~~~~v~~~~~~---~~~-~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~ 204 (284)
.+.|++.++++|+.-.|.-.|.. ..+ .+-+..||++|+.+. .+ . .-.|-. .|+|++-+..
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d--~~-v--~~~~RF-~gk~v~~~~v 85 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVD--TK-V--RNKERF-DGKVVLEVPV 85 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEES--SC-C--STHHHH-TTSEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEecc--cc-c--cchhcc-CCCcEEEEcH
Confidence 46788888888887677776653 344 467889999998765 11 1 112333 3999987664
No 261
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=32.99 E-value=31 Score=25.74 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.++++++-|-.. +.+++.++.+|. .+. +++ ..|.-+|.+.. . -..+++.|++.|+|||
T Consensus 11 ~~~~v~~sG~~~-------~~~~~~i~~lGg----~~~---~~~----~~~THlI~~~~--~--rt~K~l~a~~~g~~IV 68 (209)
T 2etx_A 11 TAPKVLFTGVVD-------ARGERAVLALGG----SLA---GSA----AEASHLVTDRI--R--RTVKFLCALGRGIPIL 68 (209)
T ss_dssp -CCEEEECSSCC-------HHHHHHHHHTTC----EEC---SST----TTCSEEECSSC--C--CSHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCc-------HHHHHHHHHCCC----EEe---CCC----CCceEEEECCC--C--CCHHHHHHHhcCCccc
Confidence 466777766543 335778888763 122 232 24666776643 1 1468999999999999
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
.++
T Consensus 69 ~~~ 71 (209)
T 2etx_A 69 SLD 71 (209)
T ss_dssp CTH
T ss_pred cHH
Confidence 875
No 262
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=32.86 E-value=30 Score=25.00 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=25.6
Q ss_pred HHHhhccEEEEcCCCCcCccchh--HHHHHh-------cCCCEEEcCCCCccee
Q 023290 166 PYLAAIDVLVQNSQAWGECFGRI--TIEAMA-------FQLPVLGTAAGGTTEI 210 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~~--~~Eama-------~G~Pvi~~~~~~~~e~ 210 (284)
-+...||.+|.-. .|+|+- ++|++. .++| +..+ +....+
T Consensus 93 ~~~~~sda~ivlp----GG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l 140 (171)
T 1weh_A 93 RLLDLGAGYLALP----GGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGL 140 (171)
T ss_dssp HHHHHEEEEEECS----CCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGT
T ss_pred HHHHhCCEEEEeC----CCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhh
Confidence 4567899887543 345643 788888 6899 7666 444433
No 263
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=32.63 E-value=1.1e+02 Score=20.46 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
.|...+.+++.. ...+++|+..+-... .....+..++++.+++ +.+.+...++.....
T Consensus 32 ~G~~~v~kal~~------------gka~lViiA~D~~~~-~~~~~l~~lc~~~~Vp--~~~~~sk~eLG~a~G 89 (120)
T 1vq8_F 32 KGTNETTKSIER------------GSAELVFVAEDVQPE-EIVMHIPELADEKGVP--FIFVEQQDDLGHAAG 89 (120)
T ss_dssp ESHHHHHHHHHH------------TCCSEEEEESCCSSG-GGTTTHHHHHHTTCCC--EEEESCHHHHHHHTT
T ss_pred ECHHHHHHHHHc------------CCceEEEEeCCCChH-HHHHHHHHHHHhcCCC--EEEECCHHHHHHHhC
Confidence 467777777754 567777776543211 2457777888877775 455555456655543
No 264
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=32.63 E-value=80 Score=18.79 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=32.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEec
Q 023290 92 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVN 159 (284)
Q Consensus 92 ~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~ 159 (284)
+.+..|.++..++-+.+...+. ...++++.|.........+..+-+.++..++|..+ +|...|
T Consensus 24 rvstgkeleralqelekalara-----garnvqitisaendeqakelleliarllqklgykdinvrvng 87 (96)
T 2jvf_A 24 RVSTGKELERALQELEKALARA-----GARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVNG 87 (96)
T ss_dssp ECCSSSHHHHHHHHHHHHHHHH-----TCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEET
T ss_pred EEcccHHHHHHHHHHHHHHHhc-----cccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEcC
Confidence 4455676766666555543332 22567777766543222233444455566666554 455444
No 265
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.96 E-value=98 Score=19.55 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHH--hhccEEEEcCCCCcCccchhHHHHH--hcCCCEEEcCC-CCc---ce
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLGTAA-GGT---TE 209 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~--~~ad~~~~ps~~~~e~~~~~~~Eam--a~G~Pvi~~~~-~~~---~e 209 (284)
....+.......+. .+.......+....+ ...|++++-... .+.-|..+++.+ ....|+|.... ... ..
T Consensus 13 ~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~ 89 (120)
T 2a9o_A 13 ISDIIKFNMTKEGY--EVVTAFNGREALEQFEAEQPDIIILDLML-PEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVI 89 (120)
T ss_dssp HHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHH
T ss_pred HHHHHHHHHHhcCc--EEEEecCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHH
Confidence 44555555555443 333333222332333 246787764331 222344455444 35678775432 221 22
Q ss_pred eeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 210 IVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 210 ~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.++.|..+++..|.+ .+++...+..++.
T Consensus 90 ~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 90 GLELGADDYVTKPFS--NRELQARVKALLR 117 (120)
T ss_dssp HHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred HHhCCHhheEeCCCC--HHHHHHHHHHHHc
Confidence 345677889999988 8999998887764
No 266
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=31.07 E-value=1.5e+02 Score=21.37 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=43.3
Q ss_pred hcc-EEEEcCCCCcCccchhHHHHH-hcCCCEEEcCC--CCcce------eeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AID-VLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA--GGTTE------IVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad-~~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~--~~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+| ++|.|.- +...+.++.+|+ +.++|+|=.-. .-.+| ++.+...|.++--+ ++...-+|..+++
T Consensus 94 ~~dgIIINPgA--yTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRhhS~is~~a~GvI~G~G---~~gY~lAl~al~~ 168 (172)
T 3n8k_A 94 AAEPVILNAGG--LTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLG---IQGYLLALRYLAE 168 (172)
T ss_dssp HTCCEEEECGG--GGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGGCCSSGGGSSEEEESST---THHHHHHHHHHHH
T ss_pred cCcEEEECcch--hhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccccccccccceEEEEeCC---hHHHHHHHHHHHH
Confidence 345 4566765 667889999998 45899994322 22234 55555678887766 6888888776654
No 267
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=30.45 E-value=2e+02 Score=22.61 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=25.2
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.++.++.. .+|+++.... .+...-.+.|++..|++++
T Consensus 54 ~sl~el~~~~~~D~viI~tP--~~~~~~~~~ea~~~Gi~~i 92 (288)
T 2nu8_A 54 NTVREAVAATGATASVIYVP--APFCKDSILEAIDAGIKLI 92 (288)
T ss_dssp SSHHHHHHHHCCCEEEECCC--GGGHHHHHHHHHHTTCSEE
T ss_pred CCHHHHhhcCCCCEEEEecC--HHHHHHHHHHHHHCCCCEE
Confidence 45666666 6888877665 5555566778888888864
No 268
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=30.42 E-value=11 Score=18.28 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=18.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
+++-+.+|+.+ +....++..+++.++ +|.|.|
T Consensus 4 qvrtiwvggtp----eelkklkeeakkani--rvtfwg 35 (36)
T 2ki0_A 4 QVRTIWVGGTP----EELKKLKEEAKKANI--RVTFWG 35 (36)
T ss_dssp SCCCCCBCCCH----HHHHHHHHHHHHHCC--CCCBCC
T ss_pred eeEEEEecCCH----HHHHHHHHHHHhccE--EEEeec
Confidence 44556667643 356667777777665 455443
No 269
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=30.38 E-value=1.4e+02 Score=24.49 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc-cCHHHHHhh-ccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAA-IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~-~~~~~~~~~-ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~ 203 (284)
....|.+.+++.|+. +.-..+. ..+.-+-.. +|++=.+|. +-.-..++++++ .|+|||.+.
T Consensus 92 ~~~~L~~~~~~~Gi~--~~st~~d~~svd~l~~~~v~~~KI~S~---~~~n~~LL~~va~~gkPviLst 155 (349)
T 2wqp_A 92 DEIKLKEYVESKGMI--FISTLFSRAAALRLQRMDIPAYKIGSG---ECNNYPLIKLVASFGKPIILST 155 (349)
T ss_dssp HHHHHHHHHHHTTCE--EEEEECSHHHHHHHHHHTCSCEEECGG---GTTCHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHhCCe--EEEeeCCHHHHHHHHhcCCCEEEECcc---cccCHHHHHHHHhcCCeEEEEC
Confidence 456777888888652 2222232 233333233 788888885 555567787665 699999875
No 270
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.02 E-value=55 Score=26.54 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.9
Q ss_pred cCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++.. .|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 57 ~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhV~~EK 98 (352)
T 3kux_A 57 SDPQMLFNDPSIDLIVIPTP--NDTHFPLAQSALAAGKHVVVDK 98 (352)
T ss_dssp SCHHHHHHCSSCCEEEECSC--TTTHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCcEEEEC
Confidence 678888876 899888775 3333345778999999999854
No 271
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=29.82 E-value=77 Score=25.69 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=16.9
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHh
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMA 194 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama 194 (284)
..+|++|+|... ....+.++++.+.
T Consensus 269 G~aDvlv~p~~d-~GnI~~K~l~~~~ 293 (337)
T 1r5j_A 269 GQANTFVFPDLQ-SGNIGYKIAQRLG 293 (337)
T ss_dssp TCCCEEECSSHH-HHHHHHHHHHHTT
T ss_pred CCCCEEEECChH-HHHHHHHHHHHhc
Confidence 689999999862 3344566666554
No 272
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=29.77 E-value=80 Score=25.28 Aligned_cols=34 Identities=9% Similarity=-0.057 Sum_probs=19.2
Q ss_pred hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
.+|.+|+.+. .....-.+-++...|+|||+.+..
T Consensus 62 ~vDgiIi~~~--~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 62 KPDYLMLVNE--QYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp CCSEEEEECC--SSHHHHHHHHHTTSCCEEEEEESC
T ss_pred CCCEEEEeCc--hhhHHHHHHHHHhCCCcEEEEcCC
Confidence 5676665432 222222344556779999987644
No 273
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.60 E-value=2.1e+02 Score=22.76 Aligned_cols=112 Identities=8% Similarity=0.045 Sum_probs=58.2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEeccc--cCHHHHHhhc
Q 023290 95 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAI 171 (284)
Q Consensus 95 ~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~--~~~~~~~~~a 171 (284)
-.|-...+..|+.-+.. +. ..-++.++|... .....+.+.+...|-. -+-+|+|.. ......+..=
T Consensus 55 L~kT~e~L~~Aa~~I~~-i~------~~~~ILfVgTk~----~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~eP 123 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVA-IE------NPQDIIVQSARP----YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 123 (305)
T ss_dssp HHHHHHHHHHHHHHHHH-TT------SSCCEEEECCSH----HHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCC
T ss_pred HHHHHHHHHHHHHHHHH-Hh------CCCeEEEEeCcH----HHHHHHHHHHHHhCCccccCcccCCcccCcccccccCC
Confidence 34555556556555433 21 223566777643 1334455666655421 011233321 1111224566
Q ss_pred cEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 172 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 172 d~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
|++++.... .+ ...+.||...|+|+|+- |+....+.| .+.++.+|.
T Consensus 124 dllvV~Dp~-~d--~qAI~EA~~lnIPtIALvDTnsdp~~V-----Dy~IP~NDd 170 (305)
T 3iz6_A 124 RLLILTDPR-TD--HQPIKESALGNIPTIAFCDTDSPMRYV-----DIGIPANNK 170 (305)
T ss_dssp SEEEESCTT-TT--HHHHHHHHHHTCCEEEEECTTSCGGGC-----SEEEESCCS
T ss_pred ceeEEeCcc-cc--hHHHHHHHHcCCCEEEEEcCCCCcccc-----ceEEeCCCC
Confidence 777765431 22 46889999999999964 555545554 345555553
No 274
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.91 E-value=2.4e+02 Score=23.14 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCCEEEc-CCCCc---c
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLGT-AAGGT---T 208 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~Pvi~~-~~~~~---~ 208 (284)
....+.......|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|||.. ..+.. .
T Consensus 12 ~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~DlvllD~~m-p~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~ 88 (387)
T 1ny5_A 12 FRGLLEEYLSMKGI--KVESAERGKEAYKLLSEKHFNVVLLDLLL-PDVNGLEILKWIKERSPETEVIVITGHGTIKTAV 88 (387)
T ss_dssp HHHHHHHHHHHHTC--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHH
T ss_pred HHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHH
Confidence 44555555555443 3433333233333333 35777754321 2223455555543 46777744 33322 2
Q ss_pred eeeecCCceeeecCCCCChHHHHHHHHHHhhCHH
Q 023290 209 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 209 e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
+.++.|..+++..|.+ ++++...|..++....
T Consensus 89 ~a~~~Ga~dyl~KP~~--~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 89 EAMKMGAYDFLTKPCM--LEEIELTINKAIEHRK 120 (387)
T ss_dssp HHHTTTCCEEEEESCC--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCceEEecCCCC--HHHHHHHHHHHHHHHH
Confidence 3445677889999988 9999999999886443
No 275
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=28.63 E-value=1.1e+02 Score=23.77 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhc
Q 023290 104 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 171 (284)
Q Consensus 104 ~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~a 171 (284)
..|.++.++.. +++.++++|+|. +-++.++.++.| +.-+....++..+..+-
T Consensus 218 sCFerI~~RFG------~k~~yvvIGDG~--------eEe~AAk~~n~P--FwrI~~h~Dl~~l~~al 269 (274)
T 3geb_A 218 SCFERIMQRFG------RKAVYVVIGDGV--------EEEQGAKKHNMP--FWRISCHADLEALRHAL 269 (274)
T ss_dssp HHHHHHHHHHC------TTSEEEEEESSH--------HHHHHHHHTTCC--EEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------CCceEEEECCCH--------HHHHHHHHcCCC--eEEeecCccHHHHHHhh
Confidence 44555555552 889999999984 334456666554 22223334565555443
No 276
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=28.51 E-value=2.3e+02 Score=22.82 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=51.7
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC-hHHHHHHHHHHHHcC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKK 150 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~-~~~~~~l~~~~~~~~ 150 (284)
-.+++.+|- -+.+.|.|+|-. ..-...++.++.. -++.+.+++...... ....+..++.+++.|
T Consensus 146 ~Ti~e~~g~-l~glkva~vGD~--~rva~Sl~~~~~~------------~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g 210 (323)
T 3gd5_A 146 LTIRENFGR-LAGLKLAYVGDG--NNVAHSLLLGCAK------------VGMSIAVATPEGFTPDPAVSARASEIAGRTG 210 (323)
T ss_dssp HHHHHHHSC-CTTCEEEEESCC--CHHHHHHHHHHHH------------HTCEEEEECCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC-CCCCEEEEECCC--CcHHHHHHHHHHH------------cCCEEEEECCCcccCCHHHHHHHHHHHHHcC
Confidence 566777773 246677899976 1222333333332 357889998744332 223444555555555
Q ss_pred CCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
. .+.+. .++.+.+..||++....
T Consensus 211 ~--~v~~~---~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 211 A--EVQIL---RDPFEAARGAHILYTDV 233 (323)
T ss_dssp C--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred C--eEEEE---CCHHHHhcCCCEEEEec
Confidence 3 34333 47888999999988764
No 277
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.42 E-value=1.9e+02 Score=21.67 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred HhhccEEEEcCCCCcCccchhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 168 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 168 ~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
+..-|+++..... .| ..++.||...|+|+|+- |+....+.+ .+.++.+|+
T Consensus 113 f~~PdlliV~Dp~-~e--~~ai~EA~~l~IPvIalvDTn~~p~~V-----d~~IP~Ndd 163 (208)
T 1vi6_A 113 YREPEVVFVNDPA-ID--KQAVSEATAVGIPVVALCDSNNSSADV-----DLVIPTNNK 163 (208)
T ss_dssp CCCCSEEEESCTT-TT--HHHHHHHHHTTCCEEEEECTTCCCTTC-----SEEEESCCS
T ss_pred hCCCCEEEEECCC-cc--hhHHHHHHHhCCCEEEEeCCCCCcccc-----CEEEeCCCC
Confidence 3456776655431 22 46899999999999975 554545544 356666653
No 278
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=28.27 E-value=1.7e+02 Score=21.23 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=59.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---cCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama---~G~P 198 (284)
++.++.+.+ .....+.......+. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~lr~~~~~~~ 76 (225)
T 1kgs_A 4 RVLVVEDER----DLADLITEALKKEMF--TVDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILKSMRESGVNTP 76 (225)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHTTCCCC
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCC
Confidence 455555432 245556666665443 3433332233333332 45887764331 2223455555543 4678
Q ss_pred EEEcCCCC----cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 199 VLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 199 vi~~~~~~----~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
+|...... ....++.|..+++..|.+ ++++..+|..++.
T Consensus 77 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGLNMGADDYLPKPFD--LRELIARVRALIR 119 (225)
T ss_dssp EEEEESSCHHHHHHHTCCCCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHh
Confidence 88543222 233455677899999988 9999999988764
No 279
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=28.25 E-value=2.3e+02 Score=22.68 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=49.9
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 151 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 151 (284)
-.+++.+|-- +.+.|.|+|-.....-...++.++.+ .+++++.+++......+ ..+.+.+++.|.
T Consensus 143 ~Ti~e~~g~l-~gl~va~vGD~~~~rva~Sl~~~~~~-----------~~g~~v~~~~P~~~~~~---~~~~~~~~~~g~ 207 (310)
T 3csu_A 143 FTIQETQGRL-DNLHVAMVGDLKYGRTVHSLTQALAK-----------FDGNRFYFIAPDALAMP---QYILDMLDEKGI 207 (310)
T ss_dssp HHHHHHHSCS-SSCEEEEESCTTTCHHHHHHHHHHHT-----------SSSCEEEEECCGGGCCC---HHHHHHHHHTTC
T ss_pred HHHHHHhCCc-CCcEEEEECCCCCCchHHHHHHHHHh-----------CCCCEEEEECCcccccC---HHHHHHHHHcCC
Confidence 5567777732 45778899965322223333333332 25889999987432221 234444555553
Q ss_pred CCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 152 QDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
.+.+. .++.+.+..||++....
T Consensus 208 --~~~~~---~d~~eav~~aDvvyt~~ 229 (310)
T 3csu_A 208 --AWSLH---SSIEEVMAEVDILYMTR 229 (310)
T ss_dssp --CEEEC---SCGGGTTTTCSEEEECC
T ss_pred --eEEEE---cCHHHHhcCCCEEEECC
Confidence 34333 46777889999988764
No 280
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=28.15 E-value=1.6e+02 Score=22.09 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=29.0
Q ss_pred cCHHHHH-hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcCCC
Q 023290 162 LTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 205 (284)
Q Consensus 162 ~~~~~~~-~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~~~ 205 (284)
.++.+++ ..+|+++..+. .....-.+.+++..|++||+...+
T Consensus 41 ~~~~~l~~~~~DvVv~~~~--~~~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAAS--QQAVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp SSHHHHTTSCCSEEEECSC--HHHHHHHHHHHHHTTCEEEESCGG
T ss_pred CCHHHHhcCCCCEEEECCC--HHHHHHHHHHHHHCCCcEEEECcc
Confidence 4666777 68899988765 333233456888889999987544
No 281
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=28.12 E-value=1.6e+02 Score=20.76 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=41.5
Q ss_pred hcc-EEEEcCCCCcCccchhHHHHH----hcCCCEEEcCCC--Ccce------eeecCCceeeecCCCCChHHHHHHHHH
Q 023290 170 AID-VLVQNSQAWGECFGRITIEAM----AFQLPVLGTAAG--GTTE------IVVNGTTGLLHPVGKEGITPLAKNIVK 236 (284)
Q Consensus 170 ~ad-~~~~ps~~~~e~~~~~~~Eam----a~G~Pvi~~~~~--~~~e------~v~~~~~g~~~~~~d~~~~~~~~~i~~ 236 (284)
.+| +++.|.- +...+.++..|+ +.++|+|=.... ..+| ++.+...|.++--+ ++...-++..
T Consensus 70 ~~dgiiINpgA--~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~FRh~S~~s~~a~G~I~G~G---~~gY~lAl~~ 144 (151)
T 3u80_A 70 EKTPVVMNPAA--FTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFRKRSVISPVATGTITGMG---FYGYKLALDA 144 (151)
T ss_dssp HTCCEEEECTT--CCSCCHHHHHHHHHHHHTTCCEEEEESSCCC---------CSCCCCSEEEESST---THHHHHHHHH
T ss_pred cCcEEEECcch--hhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccchhhcccccccceEEEEecC---hHHHHHHHHH
Confidence 345 5667776 777899999994 459999944222 2234 55555677777766 6788777776
Q ss_pred Hh
Q 023290 237 LA 238 (284)
Q Consensus 237 l~ 238 (284)
++
T Consensus 145 ~~ 146 (151)
T 3u80_A 145 VA 146 (151)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 282
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=27.65 E-value=2e+02 Score=22.65 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=21.2
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.++.++.. .+|+.+.... .+...-.+.|+...|++
T Consensus 54 ~sl~el~~~~~~Dv~Ii~vp--~~~~~~~~~ea~~~Gi~ 90 (288)
T 1oi7_A 54 DTVKEAVAHHEVDASIIFVP--APAAADAALEAAHAGIP 90 (288)
T ss_dssp SSHHHHHHHSCCSEEEECCC--HHHHHHHHHHHHHTTCS
T ss_pred CCHHHHhhcCCCCEEEEecC--HHHHHHHHHHHHHCCCC
Confidence 34555555 6777776554 44445556667777776
No 283
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=27.62 E-value=1.3e+02 Score=19.48 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=40.5
Q ss_pred hccEEEEcCCCCcCccchhHHHHHh----cCCCEEE-cCCCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhhC
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAMA----FQLPVLG-TAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 240 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eama----~G~Pvi~-~~~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~~ 240 (284)
..|++++-..- .+.-|..+++.+. ...|+|. +.... ..+.++.|..+++..|.+ .+++..+|..++..
T Consensus 48 ~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 48 RPDILLLDIIM-PHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD--MENLAHHIRQVYGK 123 (130)
T ss_dssp CCSEEEEESCC-SSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSC--CTTHHHHHHHHHHC
T ss_pred CCCEEEEecCC-CCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhcC
Confidence 35887764331 2223455555543 3456653 33222 223445677889999887 89999999887753
No 284
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=27.61 E-value=1.3e+02 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEeccc--cCHHHHH-hh-ccEEEEcCCCCcCccchhHHHHHh-cCCCEEEcC
Q 023290 138 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYL-AA-IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 203 (284)
Q Consensus 138 ~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~-~~-ad~~~~ps~~~~e~~~~~~~Eama-~G~Pvi~~~ 203 (284)
....|.+.+++.|+ .|+..+ .+-.+++ .. +|++=.+|. +-.-..++++++ .|+|||.+.
T Consensus 102 ~~~~L~~~~~~~Gi----~~~stpfD~~svd~l~~~~vd~~KIgS~---~~~N~pLL~~va~~gKPViLSt 165 (385)
T 1vli_A 102 WILPLLDYCREKQV----IFLSTVCDEGSADLLQSTSPSAFKIASY---EINHLPLLKYVARLNRPMIFST 165 (385)
T ss_dssp GHHHHHHHHHHTTC----EEECBCCSHHHHHHHHTTCCSCEEECGG---GTTCHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHcCC----cEEEccCCHHHHHHHHhcCCCEEEECcc---cccCHHHHHHHHhcCCeEEEEC
Confidence 56778888888764 344333 2222334 32 688888885 555667787665 699999875
No 285
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.54 E-value=1.6e+02 Score=20.80 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecccc-CHHHHHhhccEEEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAIDVLVQ 176 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~-~~~~~~~~ad~~~~ 176 (284)
.+.-+++.|++. +..-++.+-+++|. +|...+... .-.++.+.||-++.
T Consensus 109 ~d~~vLvSgD~D-----F~plv~~lr~~~G~--~V~v~g~~~~~s~~L~~~ad~fi~ 158 (165)
T 2qip_A 109 VDRVILVSGDGD-----FSLLVERIQQRYNK--KVTVYGVPRLTSQTLIDCADNFVA 158 (165)
T ss_dssp CSEEEEECCCGG-----GHHHHHHHHHHHCC--EEEEEECGGGSCHHHHHHSSEEEE
T ss_pred CCEEEEEECChh-----HHHHHHHHHHHcCc--EEEEEeCCCcChHHHHHhCCEEEe
Confidence 566666666653 44444444333575 687777652 33678899998874
No 286
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=27.37 E-value=59 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.0
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 57 ~~~~~ll~~~~~D~V~i~tp--~~~H~~~~~~al~aGk~Vl~EK 98 (364)
T 3e82_A 57 ASPEAAVQHPDVDLVVIASP--NATHAPLARLALNAGKHVVVDK 98 (364)
T ss_dssp SCHHHHHTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCcEEEeC
Confidence 57888887 7899988775 3333345678999999999854
No 287
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.36 E-value=43 Score=23.78 Aligned_cols=38 Identities=13% Similarity=-0.100 Sum_probs=22.9
Q ss_pred HHHhhccEEEEcCCC--CcCccchhHHHHHhcCCCEEEcC
Q 023290 166 PYLAAIDVLVQNSQA--WGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~--~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
..+..||++|.--.. -..|...=+-=|.+.|+||++-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 457999998754310 01222222334789999999864
No 288
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=26.90 E-value=83 Score=20.31 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=43.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
.++.+++.|..+ .....+++++..+|- .+ .... . ..++-+|.... ....+.++..|...|+|||
T Consensus 17 ~g~~i~isg~~~----~~r~~l~~li~~~Gg--~v--~~~~---s---~~~THlI~~~~--~~~~~~K~~~A~~~gi~IV 80 (107)
T 3l3e_A 17 HKVVVCVSKKLS----KKQSELNGIAASLGA--DY--RRSF---D---ETVTHFIYQGR--PNDTNREYKSVKERGVHIV 80 (107)
T ss_dssp TTCEEEECGGGG----GGHHHHHHHHHHTTC--EE--ESSC---C---TTCCEEECCCC--TTCCCHHHHHHHHTTCEEE
T ss_pred CCeEEEEeCCCh----HhHHHHHHHHHHcCC--EE--eccc---c---CCceEEEecCC--CCCCCHHHHHHHHCCCeEe
Confidence 577888877643 257888889988863 22 2221 1 35666666332 2334578889999999999
Q ss_pred EcC
Q 023290 201 GTA 203 (284)
Q Consensus 201 ~~~ 203 (284)
..+
T Consensus 81 ~~~ 83 (107)
T 3l3e_A 81 SEH 83 (107)
T ss_dssp CHH
T ss_pred cHH
Confidence 875
No 289
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=26.57 E-value=1.3e+02 Score=19.24 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (284)
.|...+.++++. ...+++|+.... ..+....+..+++..+++ .+.+.+...++....
T Consensus 19 ~G~~~v~kai~~------------gka~lViiA~D~--~~~~~~~l~~~c~~~~vp-~~~~~~s~~eLG~a~ 75 (101)
T 1w41_A 19 MGARKSIQYAKM------------GGAKLIIVARNA--RPDIKEDIEYYARLSGIP-VYEFEGTSVELGTLL 75 (101)
T ss_dssp ESHHHHHHHHHH------------TCCSEEEEETTS--CHHHHHHHHHHHHHHTCC-EEEESSCHHHHHHHT
T ss_pred ECHHHHHHHHHc------------CCCcEEEEeCCC--CHHHHHHHHHHHHhcCCC-EEEecCCHHHHHHHh
Confidence 467777777754 667888877653 235778888888887764 232334445555544
No 290
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=26.36 E-value=3.2e+02 Score=23.69 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=46.8
Q ss_pred CeEEEEEecCCCC--ChHHHHHHHHHHHHcCCCCcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHH--hc
Q 023290 122 SVHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AF 195 (284)
Q Consensus 122 ~~~l~i~G~~~~~--~~~~~~~l~~~~~~~~~~~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eam--a~ 195 (284)
+-++.|+|..+.. ......+++++.++.|+.-++.+.+.. +++.. +..|++-+..+. . .+..+.++| -+
T Consensus 153 ~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg~t~~ei~~-~~~A~~niv~~~--~--~g~~~A~~Le~r~ 227 (525)
T 3aek_B 153 EVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRK-LGQAHFNVLMYP--E--TGESAARHLERAC 227 (525)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETTCCHHHHHT-GGGSSEEEECCH--H--HHHHHHHHHHHHS
T ss_pred CCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-hccCCEEEEECh--h--hHHHHHHHHHHHc
Confidence 4578999875432 112457899999999997666666542 34433 556666665442 1 245566666 45
Q ss_pred CCCEEEc
Q 023290 196 QLPVLGT 202 (284)
Q Consensus 196 G~Pvi~~ 202 (284)
|+|.+..
T Consensus 228 GiP~i~~ 234 (525)
T 3aek_B 228 KQPFTKI 234 (525)
T ss_dssp CCCBCCC
T ss_pred CCCceec
Confidence 7887764
No 291
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=26.24 E-value=61 Score=26.40 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=29.6
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++. ..|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 55 ~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 96 (358)
T 3gdo_A 55 HELEEITNDPAIELVIVTTP--SGLHYEHTMACIQAGKHVVMEK 96 (358)
T ss_dssp SSTHHHHTCTTCCEEEECSC--TTTHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHcCCeEEEec
Confidence 57777887 6899988776 3333346778999999999853
No 292
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.23 E-value=80 Score=19.40 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 24 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 24 s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
...+...++..+.+..|+++++..++.+|-
T Consensus 29 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk 58 (84)
T 2kk8_A 29 YRDTLLVVKQKIERSQHIPVSKQTLIVDGI 58 (84)
T ss_dssp TTSBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCChHHHHHHHHHHHHCcChHHEEEEECCE
Confidence 334556677778888888888888888874
No 293
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=26.05 E-value=51 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=29.4
Q ss_pred cCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++.. .|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 55 ~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 96 (362)
T 3fhl_A 55 RSFKELTEDPEIDLIVVNTP--DNTHYEYAGMALEAGKNVVVEK 96 (362)
T ss_dssp SCSHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCeEEEec
Confidence 577778876 899988776 3333345778999999999853
No 294
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=25.81 E-value=2.7e+02 Score=22.61 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=61.2
Q ss_pred eEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEE
Q 023290 46 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 125 (284)
Q Consensus 46 i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l 125 (284)
+-||. |.+ +..+|...-. +--.+++.+|.+-+.+.|.|+|-. . + .+...+..+... -++.+
T Consensus 123 vPVIN-a~~-~~~HPtQ~La----Dl~Ti~e~~g~~l~gl~va~vGD~-~--~--~va~Sl~~~~~~--------~G~~v 183 (335)
T 1dxh_A 123 VPVFN-GLT-DEYHPTQMLA----DVLTMREHSDKPLHDISYAYLGDA-R--N--NMGNSLLLIGAK--------LGMDV 183 (335)
T ss_dssp SCEEE-EEC-SSCCHHHHHH----HHHHHHHTCSSCGGGCEEEEESCC-S--S--HHHHHHHHHHHH--------TTCEE
T ss_pred CCEEc-CCC-CCCCcHHHHH----HHHHHHHHcCCCcCCeEEEEecCC-c--c--chHHHHHHHHHH--------cCCEE
Confidence 44565 444 4444433221 135567776622245778899974 1 1 333444443332 46889
Q ss_pred EEEecCCCCCh-HHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 126 VIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 126 ~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
.+++......+ +..+..++.+++.|. .+.+. .++.+.+..||++....
T Consensus 184 ~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~---~d~~eav~~aDvvytd~ 232 (335)
T 1dxh_A 184 RIAAPKALWPHDEFVAQCKKFAEESGA--KLTLT---EDPKEAVKGVDFVHTDV 232 (335)
T ss_dssp EEECCGGGSCCHHHHHHHHHHHHHHTC--EEEEE---SCHHHHTTTCSEEEECC
T ss_pred EEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE---eCHHHHhCCCCEEEeCC
Confidence 99987433222 234445556666653 34433 57888999999988754
No 295
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=25.75 E-value=1.4e+02 Score=19.29 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=37.1
Q ss_pred eEEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc
Q 023290 85 LLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 160 (284)
Q Consensus 85 ~~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 160 (284)
.+++=+..+.. .-|+..++.+.+.+.+ .+.++.++|-. ..+++..+..|+...+.+.+.
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~~i~~~ 104 (117)
T 4hyl_A 44 KMILDLREVSYMSSAGLRVLLSLYRHTSN---------QQGALVLVGVS--------EEIRDTMEITGFWNFFTACAS 104 (117)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHHH---------TTCEEEEECCC--------HHHHHHHHHHTCGGGCEEESC
T ss_pred eEEEECCCCcEEcHHHHHHHHHHHHHHHH---------cCCEEEEEeCC--------HHHHHHHHHhCccceeeecCC
Confidence 44445555543 4567777777766654 67888998864 456667777777655555443
No 296
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=25.71 E-value=1.1e+02 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=17.1
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHh
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMA 194 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama 194 (284)
..+|++|+|... ....+.++++.+.
T Consensus 272 G~aDvlV~Pd~d-~GNI~~K~l~~~~ 296 (355)
T 1vmi_A 272 GKANVMVFPSLE-AGNIGYKIAQRLG 296 (355)
T ss_dssp TCCSEEECSSHH-HHHHHHHHHHHHH
T ss_pred CCCCEEEECChh-HHhHHHHHHHHcc
Confidence 689999999762 3345566666554
No 297
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=25.37 E-value=1.3e+02 Score=18.94 Aligned_cols=107 Identities=10% Similarity=0.112 Sum_probs=57.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHH---hcCCC
Q 023290 124 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQLP 198 (284)
Q Consensus 124 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eam---a~G~P 198 (284)
++.++.+.. .....++......|.. -+.......+....+. ..|++++-..- .+.-|..+++.+ ..+.|
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~~-vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 4 RVLIVDDAA----FMRMMLKDIITKAGYE-VAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCC
T ss_pred eEEEEcCcH----HHHHHHHHHHhhcCcE-EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHhhCCCCe
Confidence 455555432 2455566666655431 1222222223333332 46887764331 222344555554 24678
Q ss_pred EEEc-CCCCc---ceeeecCCceeeecCCCCChHHHHHHHHHHh
Q 023290 199 VLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 238 (284)
Q Consensus 199 vi~~-~~~~~---~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~ 238 (284)
+|.. ..... ....+.|..+++..|.+ ++++...+..++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ--PSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHh
Confidence 7754 32222 23445677889999988 999999887654
No 298
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=24.99 E-value=1.6e+02 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHhhccEEEEcCCCCcCccc----hhHHHHHhcCCCEEEcC
Q 023290 167 YLAAIDVLVQNSQAWGECFG----RITIEAMAFQLPVLGTA 203 (284)
Q Consensus 167 ~~~~ad~~~~ps~~~~e~~~----~~~~Eama~G~Pvi~~~ 203 (284)
-++..|++|+... ...++ -.+.+++..|.++|+..
T Consensus 55 ~L~~~D~vV~~~~--~~~l~~~~~~~l~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 55 DFSPYQLVVLDYN--GDSWPEETNRRFLEYVQNGGGVVIYH 93 (281)
T ss_dssp CCTTCSEEEECCC--SSCCCHHHHHHHHHHHHTTCEEEEEG
T ss_pred hhhcCCEEEEeCC--CCcCCHHHHHHHHHHHHcCCCEEEEe
Confidence 3678999985443 33333 24667788999999754
No 299
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=24.99 E-value=97 Score=20.63 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
.|...+.+++.. ...+++|+..+-... +....+..++++.+++ +.+.+...++.....
T Consensus 30 ~G~~~v~kal~~------------gka~lViiA~D~~~~-~~~~~l~~lc~~~~Vp--~~~~~sk~eLG~a~G 87 (119)
T 1rlg_A 30 KGTNETTKAVER------------GLAKLVYIAEDVDPP-EIVAHLPLLCEEKNVP--YIYVKSKNDLGRAVG 87 (119)
T ss_dssp ESHHHHHHHHTT------------TCCSEEEEESCCSCS-TTTTHHHHHHHHHTCC--EEEESCHHHHHHHTT
T ss_pred ECHHHHHHHHHc------------CCCcEEEEeCCCChH-HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhC
Confidence 466777766643 567777776533211 1467788888888875 455555556655543
No 300
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=24.60 E-value=1.1e+02 Score=20.52 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (284)
.|...+.++++. ...+++|+..+-.. ......+..++++.+++ +.+.+...++....
T Consensus 31 ~G~~~v~kal~~------------gka~lViiA~D~~~-~~~~~~l~~lc~~~~Vp--~~~v~sk~eLG~a~ 87 (124)
T 2fc3_A 31 KGTNETTKAVER------------GLAKLVVIAEDVDP-PEIVMHLPLLCDEKKIP--YVYVPSKKRLGEAA 87 (124)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEEETTCSS-GGGTTTHHHHHHHTTCC--EEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHc------------CCceEEEEcCCCCh-HHHHHHHHHHHHHcCCC--EEEECCHHHHHHHh
Confidence 467777776654 56777777654321 12456777788887775 44444444554443
No 301
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=24.56 E-value=1e+02 Score=19.76 Aligned_cols=57 Identities=5% Similarity=0.098 Sum_probs=32.6
Q ss_pred EEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEec
Q 023290 86 LFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 159 (284)
Q Consensus 86 ~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 159 (284)
+++=+..+.. .-|+..++.+.+.+.+ .+.++.++|-. ..+++..+..++...+.+.+
T Consensus 46 vvlDls~v~~iDssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~~i~~ 104 (116)
T 1th8_B 46 IVLNLGQLTFMDSSGLGVILGRYKQIKN---------VGGQMVVCAVS--------PAVKRLFDMSGLFKIIRVEA 104 (116)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHHH---------TTCCEEEESCC--------HHHHHHHHHHTGGGTSEEES
T ss_pred EEEECCCCcEEccHHHHHHHHHHHHHHH---------hCCeEEEEeCC--------HHHHHHHHHhCCceeEEEeC
Confidence 3444444433 3566666666666544 56778888864 45566666666654444443
No 302
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=24.54 E-value=63 Score=24.35 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHHhhccEEEEcCCCCcCccch--hHHHHHhc------CCCEEEcCCCC
Q 023290 166 PYLAAIDVLVQNSQAWGECFGR--ITIEAMAF------QLPVLGTAAGG 206 (284)
Q Consensus 166 ~~~~~ad~~~~ps~~~~e~~~~--~~~Eama~------G~Pvi~~~~~~ 206 (284)
-+...||.+|.- ..|+|+ =++|++.. ++||+.-+..+
T Consensus 105 ~~~~~sda~Vvl----pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g 149 (215)
T 2a33_A 105 EMAKHSDAFIAL----PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 149 (215)
T ss_dssp HHHHTCSEEEEC----SCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGG
T ss_pred HHHHhCCEEEEe----CCCCchHHHHHHHHHHHHhCCCCCCeEEecCcc
Confidence 456789998764 244553 26677665 89999887643
No 303
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=24.31 E-value=2.1e+02 Score=20.83 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=5.7
Q ss_pred cCCCeEEEecC
Q 023290 42 KMPDTYVVHLG 52 (284)
Q Consensus 42 ~~~~i~vi~~g 52 (284)
+.+++-++-.+
T Consensus 44 ~~d~vGLV~fa 54 (192)
T 2x5n_A 44 PENMCGLMTIG 54 (192)
T ss_dssp TTCEEEEEECC
T ss_pred CCCeEEEEEEc
Confidence 44566555444
No 304
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=24.21 E-value=1.1e+02 Score=18.84 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCCc
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGNS 54 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~~ 54 (284)
..+...++..+.+..|++++...++.+|-.
T Consensus 24 ~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~ 53 (88)
T 2hj8_A 24 TQTVAHLKQQVSGLEGVQDDLFWLTFEGKP 53 (88)
T ss_dssp SSBHHHHHHHHHHHTCSCTTTEEEESSSSC
T ss_pred CCcHHHHHHHHHHHhCCChhHEEEEECCEE
Confidence 344555666677777888877777777643
No 305
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=24.09 E-value=83 Score=23.97 Aligned_cols=68 Identities=9% Similarity=-0.064 Sum_probs=43.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCCEE
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 200 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi 200 (284)
...++++-|-.. +....+.+.++.+|.. + ... .+ +=..|.-+|.+.. . -..+++.|++.|++||
T Consensus 8 ~~~~~~~Sg~~~----~~~~~l~~~i~~LGg~--~--~~~-~~---~~~~~THlV~~~~--~--RT~K~l~aia~G~wIv 71 (235)
T 3al2_A 8 KQYIFQLSSLNP----QERIDYCHLIEKLGGL--V--IEK-QC---FDPTCTHIVVGHP--L--RNEKYLASVAAGKWVL 71 (235)
T ss_dssp CCCEEEEESCCH----HHHHHHHHHHHHTTCE--E--CCS-SS---CCTTCCEEEESSC--C--CSHHHHHHHHTTCEEE
T ss_pred CCEEEEEcCCCH----HHHHHHHHHHHHcCCE--E--ecc-CC---CCCCCcEEEECCC--C--CCHHHHHHHHcCCcCc
Confidence 456677766432 3566788888888731 2 110 01 1146677777664 1 2679999999999999
Q ss_pred EcCC
Q 023290 201 GTAA 204 (284)
Q Consensus 201 ~~~~ 204 (284)
.+++
T Consensus 72 s~~w 75 (235)
T 3al2_A 72 HRSY 75 (235)
T ss_dssp CTHH
T ss_pred cHHH
Confidence 9853
No 306
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=24.03 E-value=2.5e+02 Score=21.71 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=49.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHHcCCC-CcEEEeccc--cCHHHHHhhccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 122 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 122 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~--~~~~~~~~~ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
.-++.++|.... ....+.+.+...|-. -+-+|+|.. .-...-+..-|+++..... .+ ..++.||...|+|
T Consensus 104 ~~~iLfVgTk~~----aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~-~e--~~AI~EA~~lgIP 176 (253)
T 3bch_A 104 PADVSVISSRNT----GQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPR-AD--HQPLTEASYVNLP 176 (253)
T ss_dssp GGGEEEEECSHH----HHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTT-TT--HHHHHHHHHTTCC
T ss_pred CCeEEEEeCCHH----HHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCC-cc--chHHHHHHHhCCC
Confidence 344677776431 234455666665431 011233321 1111224556777654431 23 4689999999999
Q ss_pred EEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 199 VLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 199 vi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
+|+- |+....+.+ .+.++.+|+
T Consensus 177 vIalvDTn~dp~~V-----Dy~IP~Ndd 199 (253)
T 3bch_A 177 TIALCNTDSPLRYV-----DIAIPCNNK 199 (253)
T ss_dssp EEEEECTTCCCTTC-----SEEEESCCS
T ss_pred EEEEEcCCCCcccC-----ceEeecCCc
Confidence 9965 555555554 356666653
No 307
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=24.00 E-value=2.8e+02 Score=22.23 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=61.0
Q ss_pred eEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEE
Q 023290 46 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 125 (284)
Q Consensus 46 i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l 125 (284)
+-||+ |-+. ..+|...-.. --.+++.+|- -+.+.|.|+|-. . .+...+..+... -++.+
T Consensus 124 vPVIN-a~~~-~~HPtQaLaD----l~Ti~e~~g~-l~gl~va~vGD~--~----rva~Sl~~~~~~--------~g~~v 182 (315)
T 1pvv_A 124 VPVIN-GLSD-FSHPCQALAD----YMTIWEKKGT-IKGVKVVYVGDG--N----NVAHSLMIAGTK--------LGADV 182 (315)
T ss_dssp SCEEE-EECS-SCCHHHHHHH----HHHHHHHHSC-CTTCEEEEESCC--C----HHHHHHHHHHHH--------TTCEE
T ss_pred CCEEc-CCCC-CCCcHHHHHH----HHHHHHHhCC-cCCcEEEEECCC--c----chHHHHHHHHHH--------CCCEE
Confidence 45665 4442 4444332211 3556777773 245778899975 1 233333333321 46789
Q ss_pred EEEecCCCCChH-HHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 126 VIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 126 ~i~G~~~~~~~~-~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
.++|......+. ..+.+++.+++.|. .+.+. .++.+.+..||++....
T Consensus 183 ~~~~P~~~~~~~~~~~~~~~~a~~~g~--~~~~~---~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 183 VVATPEGYEPDEKVIKWAEQNAAESGG--SFELL---HDPVKAVKDADVIYTDV 231 (315)
T ss_dssp EEECCTTCCCCHHHHHHHHHHHHHHTC--EEEEE---SCHHHHTTTCSEEEECC
T ss_pred EEECCccccCCHHHHHHHHHHHHHcCC--eEEEE---eCHHHHhCCCCEEEEcc
Confidence 999875443322 33445556666653 34333 57888999999998755
No 308
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=23.88 E-value=68 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=29.1
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 55 ~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 96 (294)
T 1lc0_A 55 ISLEDALRSQEIDVAYICSE--SSSHEDYIRQFLQAGKHVLVEY 96 (294)
T ss_dssp CCHHHHHHCSSEEEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEEeCC--cHhHHHHHHHHHHCCCcEEEeC
Confidence 57888887 6788888775 3322345678999999999854
No 309
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=23.75 E-value=2e+02 Score=20.34 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=42.5
Q ss_pred hccE-EEEcCCCCcCccchhHHHHH-hcCCCEEEcCCCC--cc------eeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDV-LVQNSQAWGECFGRITIEAM-AFQLPVLGTAAGG--TT------EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~-~~~ps~~~~e~~~~~~~Eam-a~G~Pvi~~~~~~--~~------e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
.+|. ++.|.- +...+.++..|+ +.++|+|=..... .+ .++.+...|.++--+ ++...-++..+++
T Consensus 73 ~~dgiiINpgA--~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh~S~~s~~a~GvI~G~G---~~gY~lAl~~~~~ 147 (153)
T 3lwz_A 73 NTDFILINPAA--FTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHHSYLSDIAVGVICGLG---ADGYNFALQAAVN 147 (153)
T ss_dssp TCSEEEEECGG--GGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESST---THHHHHHHHHHHH
T ss_pred cCceEEEcccc--ceechHHHHHHHHhcCCCEEEEEcCCccccchhhhcccccccceEEEEecC---hhHHHHHHHHHHH
Confidence 3454 566765 666788999987 5689999442221 22 344455677777766 6888888776654
No 310
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=23.71 E-value=1.1e+02 Score=22.64 Aligned_cols=25 Identities=12% Similarity=0.059 Sum_probs=14.6
Q ss_pred CHHHHHhhccEEEEcCCCCcCccch
Q 023290 163 TVAPYLAAIDVLVQNSQAWGECFGR 187 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~e~~~~ 187 (284)
++.+.+..||.+|+.+.-|+.++|-
T Consensus 63 ~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 63 AEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred HHHHHHHhCCEEEEECCccccCCCH
Confidence 4455567777776554444555553
No 311
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=23.53 E-value=56 Score=26.44 Aligned_cols=40 Identities=13% Similarity=0.088 Sum_probs=29.2
Q ss_pred cCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++.. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 55 ~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~Vl~EK 96 (345)
T 3f4l_A 55 SDLDEVLNDPDVKLVVVCTH--ADSHFEYAKRALEAGKNVLVEK 96 (345)
T ss_dssp SCTHHHHTCTTEEEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHcCCcEEEeC
Confidence 577778876 899888775 3333345778999999999753
No 312
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.45 E-value=1.5e+02 Score=18.86 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
.|.....+++++ ...+++|+....+ +.....+..++...+++ -+.+.+...++.....
T Consensus 18 ~G~~~v~kai~~------------gka~lViiA~D~~--~~~~~~i~~~c~~~~ip-~~~~~~s~~eLG~a~G 75 (99)
T 3j21_Z 18 LGSNETIRLAKT------------GGAKLIIVAKNAP--KEIKDDIYYYAKLSDIP-VYEFEGTSVELGTLLG 75 (99)
T ss_dssp ESHHHHHHHHHH------------TCCSEEEEECCCC--HHHHHHHHHHHHHTTCC-EEEECCCSCGGGGTTC
T ss_pred ECHHHHHHHHHc------------CCccEEEEeCCCC--HHHHHHHHHHHHHcCCC-EEEeCCCHHHHHHHHC
Confidence 466777777754 6778888776533 34778888888888775 2334354456655543
No 313
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=23.12 E-value=74 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=25.1
Q ss_pred HHHHhhccEEEEcCCCCcCccch--hHHHHHh------cCCCEEEcCCCC
Q 023290 165 APYLAAIDVLVQNSQAWGECFGR--ITIEAMA------FQLPVLGTAAGG 206 (284)
Q Consensus 165 ~~~~~~ad~~~~ps~~~~e~~~~--~~~Eama------~G~Pvi~~~~~~ 206 (284)
..++..||++|.- ..|+|+ =++|++. .++||+..+..+
T Consensus 100 ~~~~~~sda~I~l----pGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g 145 (216)
T 1ydh_A 100 AAMAQEAEAFIAL----PGGYGTMEELLEMITWSQLGIHKKTVGLLNVDG 145 (216)
T ss_dssp HHHHHHCSEEEEC----SCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGG
T ss_pred HHHHHhCCEEEEe----CCCccHHHHHHHHHHHHHhcccCCCEEEecCCc
Confidence 3456789998863 344553 2556654 689999887643
No 314
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.10 E-value=1.2e+02 Score=19.44 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=21.2
Q ss_pred chhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 24 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 24 s~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
...+...+++.+.+..+++....+++++|-
T Consensus 35 ~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk 64 (106)
T 1wx7_A 35 DTCTIQQLKEEISQRFKAHPDQLVLIFAGK 64 (106)
T ss_dssp TTCCHHHHHHHHHHHHTCCTTTEEEEETTE
T ss_pred CCCcHHHHHHHHHHHHCcChhhEEEEECCE
Confidence 344556667777777788888888887774
No 315
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=23.04 E-value=1.8e+02 Score=24.68 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=47.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEecc--------------ccCHHHHHhhccEEEEcCCCCcCccc
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------TLTVAPYLAAIDVLVQNSQAWGECFG 186 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~ad~~~~ps~~~~e~~~ 186 (284)
...++.|+|-|. .-..+.+.++.+|. +|.+.+. ..++.+++..||+++..+.. ..-+.
T Consensus 210 ~GktVgIiG~G~-----IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt-~~iI~ 281 (436)
T 3h9u_A 210 AGKTACVCGYGD-----VGKGCAAALRGFGA--RVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGN-DDIIT 281 (436)
T ss_dssp TTCEEEEECCSH-----HHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSC-SCSBC
T ss_pred cCCEEEEEeeCH-----HHHHHHHHHHHCCC--EEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCC-cCccC
Confidence 466788888875 55667777777765 5666543 13678889999999975531 22233
Q ss_pred hhHHHHHhcCCCEEEcC
Q 023290 187 RITIEAMAFQLPVLGTA 203 (284)
Q Consensus 187 ~~~~Eama~G~Pvi~~~ 203 (284)
-..++.|.-|.-+|...
T Consensus 282 ~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 282 SEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp TTTGGGCCTTEEEEECS
T ss_pred HHHHhhcCCCcEEEEeC
Confidence 34566666665555443
No 316
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=22.83 E-value=91 Score=24.30 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=30.9
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhc------CCCEEEcCCCCcceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAF------QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~------G~Pvi~~~~~~~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..+|+++.-. .+| +++++... ++|++.-+. |.+|++.+. + ++++.+++..+++
T Consensus 34 ~~~D~vv~lG---GDG---T~l~aa~~~~~~~~~~PilGIn~---------G~lgfl~~~-~--~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 34 VEPEIVISIG---GDG---TFLSAFHQYEERLDEIAFIGIHT---------GHLGFYADW-R--PAEADKLVKLLAK 92 (272)
T ss_dssp SSCSEEEEEE---SHH---HHHHHHHHTGGGTTTCEEEEEES---------SSCCSSCCB-C--GGGHHHHHHHHHT
T ss_pred CCCCEEEEEc---CcH---HHHHHHHHHhhcCCCCCEEEEeC---------CCCCcCCcC-C--HHHHHHHHHHHHc
Confidence 3578888544 333 45544332 788887754 334555433 2 5667777777665
No 317
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.83 E-value=92 Score=19.08 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=26.8
Q ss_pred hcCCCEEEcCCCCcceee--------ecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 194 AFQLPVLGTAAGGTTEIV--------VNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 194 a~G~Pvi~~~~~~~~e~v--------~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
-.|+|.++.-+|....-+ ++|..--+....| |+++.+.+.+++.
T Consensus 49 dngkplvvfvngasqndvnefqneakkegvsydvlkstd--peeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD--PEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC--HHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC--HHHHHHHHHHHHH
Confidence 358888887666543322 1233333455666 8888888877764
No 318
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=22.74 E-value=3.4e+02 Score=22.70 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=28.2
Q ss_pred CHHHHHhhccEEEEcCCCCc----CccchhHHHHHhcCCCEEEc--CCCCccee
Q 023290 163 TVAPYLAAIDVLVQNSQAWG----ECFGRITIEAMAFQLPVLGT--AAGGTTEI 210 (284)
Q Consensus 163 ~~~~~~~~ad~~~~ps~~~~----e~~~~~~~Eama~G~Pvi~~--~~~~~~e~ 210 (284)
.+.+.+..||++|....... .-+.--.++.|.-|.-+|-. +.|+.-|.
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~ 321 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG 321 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence 45667899999986532101 11334567777778777743 45555443
No 319
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.53 E-value=1.2e+02 Score=18.38 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
..+...+++.+.+..+++++....+++|-
T Consensus 27 ~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk 55 (87)
T 1wh3_A 27 NSFILGLKQQIEDQQGLPKKQQQLEFQGQ 55 (87)
T ss_dssp SSBHHHHHHHHHHHTCCCTTTEEEEETTE
T ss_pred CChHHHHHHHHHHHhCCChHHEEEEECCE
Confidence 34455667777777888888888888774
No 320
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=22.44 E-value=3.1e+02 Score=22.13 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=61.3
Q ss_pred eEEEecCCccccchhhhhhhHHHHHHHHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEE
Q 023290 46 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 125 (284)
Q Consensus 46 i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l 125 (284)
+-||+ +-+. ...|...-.. --.+++.+|- -+.+.|.|+|-. ++ .+...+..+... -++.+
T Consensus 136 vPVIN-a~~~-~~HPtQaLaD----l~Ti~e~~g~-l~gl~va~vGD~---~~--rva~Sl~~~~~~--------~G~~v 195 (325)
T 1vlv_A 136 VPVYN-GLTD-EFHPTQALAD----LMTIEENFGR-LKGVKVVFMGDT---RN--NVATSLMIACAK--------MGMNF 195 (325)
T ss_dssp SCEEE-SCCS-SCCHHHHHHH----HHHHHHHHSC-STTCEEEEESCT---TS--HHHHHHHHHHHH--------TTCEE
T ss_pred CCEEe-CCCC-CCCcHHHHHH----HHHHHHHhCC-cCCcEEEEECCC---Cc--CcHHHHHHHHHH--------CCCEE
Confidence 44565 5443 4444332221 3556777773 245778899963 11 344444444332 46889
Q ss_pred EEEecCCCCCh-HHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 126 VIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 126 ~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
.++|......+ +..+.+++.+++.|. .+.+. .++.+.+..||++....
T Consensus 196 ~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~---~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 196 VACGPEELKPRSDVFKRCQEIVKETDG--SVSFT---SNLEEALAGADVVYTDV 244 (325)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHCC--EEEEE---SCHHHHHTTCSEEEECC
T ss_pred EEECCccccCCHHHHHHHHHHHHHcCC--eEEEE---cCHHHHHccCCEEEecc
Confidence 99987443222 233445556666653 34433 57888999999998755
No 321
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=22.42 E-value=1e+02 Score=22.72 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=40.4
Q ss_pred hccEEEEcCCCCcCccchhHHHHH---hcCCCEEEcCCCCc----ceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 170 AIDVLVQNSQAWGECFGRITIEAM---AFQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 170 ~ad~~~~ps~~~~e~~~~~~~Eam---a~G~Pvi~~~~~~~----~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
..|++++-..- .+.-|..+++.+ ...+|||....... .+.++.|..|++..|.+ ++++..+|..++.
T Consensus 47 ~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 47 RPDVAVLDVRL-PDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIK--GMELARAVKDVGA 120 (225)
T ss_dssp CCSEEEECSEE-TTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHH--HHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 46887764320 222344555544 34678886533222 23344577788888776 8899999988765
No 322
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=22.25 E-value=67 Score=26.01 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhh--ccEEEEcCCCCcCccchhHHHHHhcCCC
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 198 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~--ad~~~~ps~~~~e~~~~~~~Eama~G~P 198 (284)
++++++-+.+.. ..++++++++.+ .+... .++.+++.. .|+++..+. ...-.-.+..|+..|++
T Consensus 26 ~~~~l~av~d~~--------~~~~~a~~~~~~-~~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 91 (349)
T 3i23_A 26 ETLEVKTIFDLH--------VNEKAAAPFKEK-GVNFT---ADLNELLTDPEIELITICTP--AHTHYDLAKQAILAGKS 91 (349)
T ss_dssp TTEEEEEEECTT--------CCHHHHHHHHTT-TCEEE---SCTHHHHSCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEECCC--------HHHHHHHhhCCC-CCeEE---CCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHcCCE
Confidence 788887665532 112233333322 22222 466777765 899988775 33333456789999999
Q ss_pred EEEcC
Q 023290 199 VLGTA 203 (284)
Q Consensus 199 vi~~~ 203 (284)
|++-.
T Consensus 92 Vl~EK 96 (349)
T 3i23_A 92 VIVEK 96 (349)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99843
No 323
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=21.83 E-value=1.7e+02 Score=22.09 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=24.2
Q ss_pred chhHHHHHhcCCCEEEc-CCCCcceeeecCCceeeecCCCC
Q 023290 186 GRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKE 225 (284)
Q Consensus 186 ~~~~~Eama~G~Pvi~~-~~~~~~e~v~~~~~g~~~~~~d~ 225 (284)
..++.||...|+|+|+- |+...++.+ .+.++.+|+
T Consensus 162 ~~ai~Ea~~l~IP~IalvDTn~~p~~V-----dy~IP~Ndd 197 (218)
T 3r8n_B 162 HIAIKEANNLGIPVFAIVDTNSDPDGV-----DFVIPGNDD 197 (218)
T ss_dssp HHHHHHHHHHTCCCEEECCSSSCCSSC-----SEECCSCSS
T ss_pred cHHHHHHHHhCCCEEEEEeCcCCCccc-----ceEeecCCc
Confidence 46899999999999964 555545554 356666553
No 324
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=21.68 E-value=90 Score=18.57 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHhcccCCCeEEEecCCcc
Q 023290 26 VTAEYWKNRTRERLRIKMPDTYVVHLGNSK 55 (284)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~i~vi~~g~~~ 55 (284)
.+...+++.+.+..|++++..+.+++|-..
T Consensus 24 ~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L 53 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPMNSLRFLFEGQRI 53 (79)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEEC
T ss_pred ChHHHHHHHHHHHHCCCcccEEEEECCEEe
Confidence 344556666777788888888888887543
No 325
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=21.63 E-value=2.3e+02 Score=20.38 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE-EEeccccCHHHHHh--hccEEEEcCCCCcCccchhHHHHHh---
Q 023290 121 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--- 194 (284)
Q Consensus 121 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v-~~~~~~~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama--- 194 (284)
...++.++.+.+ .....+.......+- -.+ .......+....+. ..|++++-..- .+.-|..+++.+.
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~ 77 (215)
T 1a04_A 4 EPATILLIDDHP----MLRTGVKQLISMAPD-ITVVGEASNGEQGIELAESLDPDLILLDLNM-PGMNGLETLDKLREKS 77 (215)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHHCCSEEEEETTS-TTSCHHHHHHHHHHSC
T ss_pred CceEEEEECCCH----HHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHHhC
Confidence 345666766543 234445555543320 012 22222233333332 46888764331 2223555665553
Q ss_pred cCCCEEEcC-CCC---cceeeecCCceeeecCCCCChHHHHHHHHHHhh
Q 023290 195 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 239 (284)
Q Consensus 195 ~G~Pvi~~~-~~~---~~e~v~~~~~g~~~~~~d~~~~~~~~~i~~l~~ 239 (284)
...|+|... ... ..+.++.|..|++..|.+ ++++..+|..++.
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (215)
T 1a04_A 78 LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDME--PEDLLKALHQAAA 124 (215)
T ss_dssp CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHc
Confidence 356776432 222 123445678899999988 9999999998875
No 326
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=21.28 E-value=1.6e+02 Score=18.46 Aligned_cols=55 Identities=7% Similarity=0.072 Sum_probs=33.3
Q ss_pred CeEEEEeccccc--cccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcE
Q 023290 84 DLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 155 (284)
Q Consensus 84 ~~~i~~~g~~~~--~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 155 (284)
+.+++=++.+.. .-|+..++.+.+.+.+ .+.++.++|-. ..+++..+..++...+
T Consensus 45 ~~vvlDls~v~~iDssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~ 101 (110)
T 1sbo_A 45 KKIVLDLSSVSYMDSAGLGTLVVILKDAKI---------NGKEFILSSLK--------ESISRILKLTHLDKIF 101 (110)
T ss_dssp SEEEEECTTCCCBCHHHHHHHHHHHHHHHH---------TTCEEEEESCC--------HHHHHHHHHTTCGGGS
T ss_pred cEEEEECCCCcEEccHHHHHHHHHHHHHHH---------cCCEEEEEeCC--------HHHHHHHHHhCcccee
Confidence 344555565554 3456666666665544 67788888864 4566677777665433
No 327
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=21.16 E-value=3.4e+02 Score=22.09 Aligned_cols=87 Identities=7% Similarity=0.044 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCC-hHHHHHHHHHHHHcC
Q 023290 72 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKK 150 (284)
Q Consensus 72 ~~~r~~~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~-~~~~~~l~~~~~~~~ 150 (284)
-.+++.+|-- +.+.|.|+|-. .+ +...+..+... -++.+.+++...... +...+.+++.+++.|
T Consensus 168 ~TI~E~~G~l-~glkva~vGD~---~n---va~Sl~~~~~~--------~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G 232 (340)
T 4ep1_A 168 MTIYEETNTF-KGIKLAYVGDG---NN---VCHSLLLASAK--------VGMHMTVATPVGYRPNEEIVKKALAIAKETG 232 (340)
T ss_dssp HHHHHHHSCC-TTCEEEEESCC---CH---HHHHHHHHHHH--------HTCEEEEECCTTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCC-CCCEEEEECCC---ch---hHHHHHHHHHH--------cCCEEEEECCcccCCCHHHHHHHHHHHHHcC
Confidence 5667777732 45677889965 22 33333333332 257889988744332 234455555566665
Q ss_pred CCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 151 IQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
. .+.+. .++.+.+..||++....
T Consensus 233 ~--~v~~~---~d~~eav~~aDVvyt~~ 255 (340)
T 4ep1_A 233 A--EIEIL---HNPELAVNEADFIYTDV 255 (340)
T ss_dssp C--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred C--eEEEE---CCHHHHhCCCCEEEecC
Confidence 3 34433 47888999999988755
No 328
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=21.10 E-value=76 Score=25.19 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.9
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++. .+|+++..+. .....-.+.+|+..|++|++-.
T Consensus 59 ~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~v~~eK 100 (315)
T 3c1a_A 59 SDWRSVVSAPEVEAVIIATP--PATHAEITLAAIASGKAVLVEK 100 (315)
T ss_dssp SSTHHHHTCTTCCEEEEESC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhhCCCCCEEEEeCC--hHHHHHHHHHHHHCCCcEEEcC
Confidence 46777775 7999988775 3333445668899999999764
No 329
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=21.00 E-value=1.2e+02 Score=19.33 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
..+...+++.+.+..|++++...++++|-
T Consensus 41 ~~TV~~LK~~I~~~~gip~~~QrLi~~Gk 69 (100)
T 1yqb_A 41 TCTIQQLKEEISQRFKAHPDQLVLIFAGK 69 (100)
T ss_dssp TCBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred CCcHHHHHHHHHHHHCcChhhEEEEECCE
Confidence 34556667777777788888888887774
No 330
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=20.92 E-value=3.9e+02 Score=22.69 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=28.4
Q ss_pred cCHHHHHh--hccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 162 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 162 ~~~~~~~~--~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
.++.+++. ..|+++..+.. .+.---.+.+|+..|+.|++.+
T Consensus 97 ~D~eeLL~d~dIDaVviaTp~-p~~H~e~a~~AL~AGKHVv~~n 139 (446)
T 3upl_A 97 DDNDLILSNPLIDVIIDATGI-PEVGAETGIAAIRNGKHLVMMN 139 (446)
T ss_dssp SCHHHHHTCTTCCEEEECSCC-HHHHHHHHHHHHHTTCEEEECC
T ss_pred CCHHHHhcCCCCCEEEEcCCC-hHHHHHHHHHHHHcCCcEEecC
Confidence 57888887 47898866531 1211235779999999999754
No 331
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=20.84 E-value=1.5e+02 Score=24.08 Aligned_cols=90 Identities=10% Similarity=0.131 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHHHHHHHh-hccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEE
Q 023290 97 KGQDLFLHSFYESLELIKE-KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLV 175 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~-~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~ 175 (284)
-..+.+.+.........+. .|...|.+-++=+|.......+....-.++.++. ..+.|.|+.+-=..+-..+|++|
T Consensus 148 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValLN~Ge~~~~g~e~i~~A~~ll~~~---~~i~~~G~ve~d~~~~G~aDVvV 224 (345)
T 1vi1_A 148 AKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLNVGTEDKKGNELTKQTFQILKET---ANINFIGNVEARDLLDDVADVVV 224 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEESSSSTTCSCHHHHHHHHHHHSC---TTSEEEEEEEGGGGGGTSCSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCCCHHHHHHHHHHhcC---CCCeEEeccCCCccccCCCCEEE
Confidence 3455666655555554554 4545566666545543222222222222223321 24566666521112337999998
Q ss_pred EcCCCCcCccchhHHH
Q 023290 176 QNSQAWGECFGRITIE 191 (284)
Q Consensus 176 ~ps~~~~e~~~~~~~E 191 (284)
+-.. ....+++.+|
T Consensus 225 ~d~~--~GNI~lK~~e 238 (345)
T 1vi1_A 225 TDGF--TGNVTLKTLE 238 (345)
T ss_dssp CCHH--HHHHHHHHHH
T ss_pred eCch--hhhHHHHHHH
Confidence 4221 3334455665
No 332
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=20.77 E-value=1.7e+02 Score=18.38 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhcccCCCeEEEecCC
Q 023290 25 HVTAEYWKNRTRERLRIKMPDTYVVHLGN 53 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~i~vi~~g~ 53 (284)
..+...++..+.+..|+++++..++++|-
T Consensus 34 ~~TV~~LK~~I~~~~gip~~~QrLi~~Gk 62 (94)
T 2kan_A 34 TETVSSLKDKIHIVENTPIKRMQLYYSGI 62 (94)
T ss_dssp TCBHHHHHHHHHHHSSSCTTTEEEEETTE
T ss_pred CCcHHHHHHHHHHHHCcCHHHEEEEECCE
Confidence 34556677778888888888888888774
No 333
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=20.61 E-value=3.3e+02 Score=21.81 Aligned_cols=45 Identities=13% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCeEEEEecccccccc---HHHHHHHHHHHHHHHHhhccCCCCeEEEEEec
Q 023290 83 EDLLFAIINSVSRGKG---QDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 130 (284)
Q Consensus 83 ~~~~i~~~g~~~~~k~---~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~ 130 (284)
.+.+++++|.-+-..+ .+.+.+.+..+.+.+++. +|+.++++++.
T Consensus 226 Pd~VvI~lG~ND~~~~~~~~~~~~~~l~~li~~ir~~---~p~~~I~l~~~ 273 (347)
T 2waa_A 226 PDLIISAIGTNDFSPGIPDRATYINTYTRFVRTLLDN---HPQATIVLTEG 273 (347)
T ss_dssp CSEEEECCCHHHHSSSCCCHHHHHHHHHHHHHHHHHH---CTTCEEEECCC
T ss_pred CCEEEEEccccCCCCCCCcHHHHHHHHHHHHHHHHHH---CCCCEEEEEeC
Confidence 3677778886554333 356777777777777663 37888888874
No 334
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=20.54 E-value=2.1e+02 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=30.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHHcCCCC-cEEEeccc
Q 023290 123 VHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT 161 (284)
Q Consensus 123 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~ 161 (284)
..+.++|..+.-.++..+.++++++..|+++ +|.++...
T Consensus 113 ~~~~LygR~~~~s~e~~e~F~~~~~~~Gl~~enI~~~~~~ 152 (157)
T 3fiq_A 113 NVILVAGKREDLNKAQKQELRKLAEEYNIPNENTQHLVPT 152 (157)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGCEECGGG
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEeCCCC
Confidence 4456789988777889999999999999865 56666543
No 335
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.49 E-value=3.4e+02 Score=21.94 Aligned_cols=109 Identities=13% Similarity=0.107 Sum_probs=61.3
Q ss_pred eEEEecCCccccchhhhhhhHHHHHHHHHHHH-hCCCCCCeEEEEeccccccccHHHHHHHHHHHHHHHHhhccCCCCeE
Q 023290 46 TYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 124 (284)
Q Consensus 46 i~vi~~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~~~~~~ 124 (284)
+-||. |.+ +..+|...-.. --.+++. +|.+-+.+.|.|+|-. . + .+...+..+... -++.
T Consensus 122 vPVIN-a~~-~~~HPtQ~LaD----l~Ti~e~~~g~~l~gl~ia~vGD~-~--~--~va~Sl~~~~~~--------~G~~ 182 (333)
T 1duv_G 122 VPVWN-GLT-NEFHPTQLLAD----LLTMQEHLPGKAFNEMTLVYAGDA-R--N--NMGNSMLEAAAL--------TGLD 182 (333)
T ss_dssp SCEEE-SCC-SSCCHHHHHHH----HHHHHHHSTTCCGGGCEEEEESCT-T--S--HHHHHHHHHHHH--------HCCE
T ss_pred CCeEc-CCC-CCCCchHHHHH----HHHHHHHhcCCCCCCcEEEEECCC-c--c--chHHHHHHHHHH--------cCCE
Confidence 44565 555 44444333221 3556777 6622245778899964 1 1 333444443332 2578
Q ss_pred EEEEecCCCCCh-HHHHHHHHHHHHcCCCCcEEEeccccCHHHHHhhccEEEEcC
Q 023290 125 AVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 178 (284)
Q Consensus 125 l~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~ad~~~~ps 178 (284)
+.+++......+ +..+..++.+++.|. .+.+. .++.+.+..||++....
T Consensus 183 v~~~~P~~~~p~~~~~~~~~~~a~~~G~--~v~~~---~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 183 LRLVAPQACWPEAALVTECRALAQQNGG--NITLT---EDVAKGVEGADFIYTDV 232 (333)
T ss_dssp EEEECCGGGCCCHHHHHHHHHHHHHTTC--EEEEE---SCHHHHHTTCSEEEECC
T ss_pred EEEECCcccCCCHHHHHHHHHHHHHcCC--eEEEE---ECHHHHhCCCCEEEeCC
Confidence 899887433222 234445566666653 34443 57888999999998754
No 336
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=20.49 E-value=1.9e+02 Score=18.87 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHHh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA 169 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (284)
.|...+.+++.. ...+++|+..+- .......+..++...+++ .+.+.+...++.....
T Consensus 24 ~G~~~v~kai~~------------gka~lViiA~D~--~~~~~~~l~~~c~~~~Vp-~~~~~~sk~eLG~a~G 81 (110)
T 3cpq_A 24 LGSKRTIKFVKH------------GEGKLVVLAGNI--PKDLEEDVKYYAKLSNIP-VYQHKITSLELGAVCG 81 (110)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEECTTC--BHHHHHHHHHHHHHTTCC-EEECCSCHHHHHHHTT
T ss_pred eCHHHHHHHHHc------------CCceEEEEeCCC--CHHHHHHHHHHHHHcCCC-EEEEcCCHHHHHHHhC
Confidence 466777776654 667888877654 234778888888887764 2223244456665554
No 337
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=20.47 E-value=1.9e+02 Score=19.02 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEe-ccccCHHHHHh
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKTLTVAPYLA 169 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~-~~~~~~~~~~~ 169 (284)
.|....++++++ ...+++|+...-+ +.....+..++...+++ +++. +...++.....
T Consensus 29 ~G~~~t~kai~~------------gkakLVilA~D~~--~~~~~~i~~~c~~~~ip--v~~~~~s~~eLG~A~G 86 (112)
T 3iz5_f 29 LGYKTVLKTLRS------------SLGKLIILANNCP--PLRKSEIETYAMLAKIS--VHHFHGNNVDLGTACG 86 (112)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEECSCCC--HHHHHHHHHHHHHTTCC--EECCCCTTCTHHHHHC
T ss_pred ECHHHHHHHHHc------------CCceEEEEeCCCC--HHHHHHHHHHHHHcCCc--EEEeCCCHHHHHHHhC
Confidence 466777777754 6788888877543 24778888888888764 5555 55567766654
No 338
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=20.44 E-value=97 Score=20.11 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCeEEEEEecCCCCChHHHHHHHHHHHHcCCCCcEEEeccccCHHHHH
Q 023290 97 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 168 (284)
Q Consensus 97 k~~~~~~~a~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (284)
.|....+++++. ...+++|+...-+ +.....+..++...+++ .+.|.+...++....
T Consensus 25 ~G~~~v~kai~~------------gkaklVilA~D~~--~~~~~~i~~~c~~~~ip-~~~~~~s~~eLG~A~ 81 (105)
T 3u5e_c 25 LGYKSTVKSLRQ------------GKSKLIIIAANTP--VLRKSELEYYAMLSKTK-VYYFQGGNNELGTAV 81 (105)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEECTTSC--HHHHHHHHHHHHHHTCE-EEECSSCHHHHHHHT
T ss_pred ECHHHHHHHHHc------------CCceEEEEeCCCC--HHHHHHHHHHHHHcCCC-EEEeCCCHHHHHHHh
Confidence 456777776654 6778888876543 34667777777776553 122344444554443
No 339
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.33 E-value=3.1e+02 Score=21.36 Aligned_cols=22 Identities=9% Similarity=-0.200 Sum_probs=0.0
Q ss_pred eecCCCCChHHHHHHHHHHhhCHH
Q 023290 219 LHPVGKEGITPLAKNIVKLATHVE 242 (284)
Q Consensus 219 ~~~~~d~~~~~~~~~i~~l~~~~~ 242 (284)
-++|.. --+||-+|+-=++...
T Consensus 219 ~~dp~~--dpela~alr~s~eee~ 240 (268)
T 4b4t_W 219 GVDPSM--DPELAMALRLSMEEEQ 240 (268)
T ss_dssp ------------------------
T ss_pred CCCCCC--CHHHHHHHHHhHHHHH
Confidence 356655 4678888876665433
No 340
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=20.30 E-value=1.3e+02 Score=24.31 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=16.3
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHh
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMA 194 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama 194 (284)
..+|++|+|... ....+.++++.+.
T Consensus 265 G~aDvlV~pd~d-~GNI~~K~l~~~~ 289 (333)
T 2af4_C 265 GKANVFIFPDLN-CGNIAYKIAQRLA 289 (333)
T ss_dssp TSCCEEECSSHH-HHHHHHHHHHHTS
T ss_pred CcCCEEEECCch-HHHHHHHHHHHcc
Confidence 589999998762 3334556666443
No 341
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=20.07 E-value=91 Score=24.81 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=24.3
Q ss_pred hhccEEEEcCCCCcCccchhHHHHHhcCCCEEEcC
Q 023290 169 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 203 (284)
Q Consensus 169 ~~ad~~~~ps~~~~e~~~~~~~Eama~G~Pvi~~~ 203 (284)
...|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 71 ~~vD~V~I~tP--~~~H~~~~~~al~aGkhVl~EK 103 (312)
T 3o9z_A 71 EGVDYLSIASP--NHLHYPQIRMALRLGANALSEK 103 (312)
T ss_dssp CCCSEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEECCC--chhhHHHHHHHHHCCCeEEEEC
Confidence 46789888776 3333446778999999999854
Done!